Diaphorina citri psyllid: psy4542


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
MSLNVSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNIKDLLMIMTLSQLTKTQLLLNEKLTLLTSL
cccccEEEEEcHHHHHHHHHHHHccccccEEEEEEEEEEEccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccHHHHHHHHHHccccEEEEEEcccccccccccEEEEEEccccccccccEEEEEccEEEEcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
***NVSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNIKDLLMIMTLSQLTKTQLLLNEKLTLLTSL
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MSLNVSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNIKDLLMIMTLSQLTKTQLLLNEKLTLLTSL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Eukaryotic translation initiation factor 3 subunit F-1 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.very confidentQ9VN50
Eukaryotic translation initiation factor 3 subunit F Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.very confidentQ7QD36
Eukaryotic translation initiation factor 3 subunit F-1 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.very confidentQ295I4

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0035071 [BP]salivary gland cell autophagic cell deathprobableGO:0010259, GO:0016271, GO:0009791, GO:0048102, GO:0002165, GO:0032501, GO:0007569, GO:0009653, GO:0007275, GO:0044699, GO:0007559, GO:0007435, GO:0007431, GO:0007552, GO:0008150, GO:0048513, GO:0022612, GO:0032502, GO:0048707, GO:0009886, GO:0035070, GO:0009987, GO:0009888, GO:0044767, GO:0012501, GO:0035272, GO:0044763, GO:0044707, GO:0048856, GO:0048731, GO:0048732
GO:0016020 [CC]membraneprobableGO:0005575
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0044428 [CC]nuclear partprobableGO:0005575, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0071541 [CC]eukaryotic translation initiation factor 3 complex, eIF3mprobableGO:0043234, GO:0005737, GO:0005852, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0032991
GO:0071540 [CC]eukaryotic translation initiation factor 3 complex, eIF3eprobableGO:0043234, GO:0005737, GO:0005852, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0032991
GO:0006413 [BP]translational initiationprobableGO:0071704, GO:0044267, GO:0008152, GO:0044260, GO:0044238, GO:0019538, GO:0009987, GO:0009058, GO:0044237, GO:0043170, GO:0044249, GO:0010467, GO:0009059, GO:0044763, GO:0034645, GO:1901576, GO:0008150, GO:0006412, GO:0044699
GO:0003743 [MF]translation initiation factor activityprobableGO:0097159, GO:0008135, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0009846 [BP]pollen germinationprobableGO:0044703, GO:0032501, GO:0000003, GO:0044707, GO:0044706, GO:0022414, GO:0009856, GO:0008150, GO:0044699, GO:0051704
GO:0016282 [CC]eukaryotic 43S preinitiation complexprobableGO:0005737, GO:0032991, GO:0044464, GO:0070993, GO:0005623, GO:0030529, GO:0005575, GO:0044444, GO:0044424, GO:0005622
GO:0000502 [CC]proteasome complexprobableGO:0043234, GO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0009790 [BP]embryo developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0044767, GO:0008150, GO:0007275, GO:0044699

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2O95, chain A
Confidence level:very confident
Coverage over the Query: 3-175
View the alignment between query and template
View the model in PyMOL
Template: 4B4T, chain U
Confidence level:very confident
Coverage over the Query: 2-206
View the alignment between query and template
View the model in PyMOL