BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4547
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 75.1 bits (183), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ I G ++ GY+NR DL K +FI P +T LY TGD L DGT E
Sbjct: 801 GAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGET----LYRTGDLARWLPDGTIEY 856
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GR D VKIRG+ IEL+ IE L++YP
Sbjct: 857 AGRIDDQVKIRGHRIELEEIEKQLQEYP 884
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G G++ IGG LA GY RP+L +F+ P G +LY TGD L DG E
Sbjct: 369 VGEAGELCIGGEGLARGYWKRPELTSQKFVDNP----FVPGEKLYKTGDQARWLSDGNIE 424
Query: 61 VIGRSDTMVKIRGYTIELQAIEVAL 85
+GR D VKIRG+ +EL+ +E L
Sbjct: 425 YLGRIDNQVKIRGHRVELEEVESIL 449
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 69.7 bits (169), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+ G LA GY++RP L RF++ P G R+Y TGD DG E
Sbjct: 407 GALGELYVAGAGLAHGYVSRPALTAERFVADP--FAGPGGERMYRTGDLARRRADGVLEY 464
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR+D VKIRG+ +E +E L +P R
Sbjct: 465 VGRADDQVKIRGFRVEPGEVEARLVGHPAVR 495
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCG--VRLYNTGDWGYALGDGTF 59
G G++++ G LA GYL RP+L +F PE + G VR Y TGD L DG F
Sbjct: 375 GETGELWLSGAQLAEGYLRRPELTAEKF---PEVTDEKTGESVRYYRTGDLVSELPDGRF 431
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVALRDY 88
GR+D +K+RGY IEL IE A+R +
Sbjct: 432 AYEGRADLQIKLRGYRIELSDIETAVRRH 460
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I GP++++GYL P+L + F G R Y TGD GY + +G
Sbjct: 343 GEKGEIVIVGPSVSVGYLGSPELTEKAFTMID-------GERAYKTGDAGY-VENGLLFY 394
Query: 62 IGRSDTMVKIRGYTIELQAIEVALR 86
GR D +K+ GY +EL+ IE LR
Sbjct: 395 NGRLDFQIKLHGYRMELEEIEHHLR 419
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I GP++++GYL P+L + F G R Y TGD GY + +G
Sbjct: 343 GEKGEIVIVGPSVSVGYLGSPELTEKAFTMID-------GERAYKTGDAGY-VENGLLFY 394
Query: 62 IGRSDTMVKIRGYTIELQAIEVALR 86
GR D +K+ GY +EL+ IE LR
Sbjct: 395 NGRLDFQIKLHGYRMELEEIEHHLR 419
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 55.8 bits (133), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I GP+++ GYL P+L + F S G Y TGD G+ + DG
Sbjct: 342 GEKGEIVIAGPSVSRGYLGEPELTEKAFFSHE-------GQWAYRTGDAGF-IQDGQIFC 393
Query: 62 IGRSDTMVKIRGYTIELQAIEVALR 86
GR D +K+ GY +EL+ IE +R
Sbjct: 394 QGRLDFQIKLHGYRMELEEIEFHVR 418
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+ G LA GY++RP L RF++ P G R+Y TGD DG E
Sbjct: 407 GALGELYVAGAGLAHGYVSRPALTAERFVADP--FAGPGGERMYRTGDLARRRADGVLEY 464
Query: 62 IGRSD 66
+GR+D
Sbjct: 465 VGRAD 469
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP ++ GYLN P+ T E G Y+TGD G D
Sbjct: 346 GEQGEIIVTGPAVSKGYLNNPE-------KTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPV 90
GR D +K GY IEL+ + L P+
Sbjct: 399 GGRLDFQIKYAGYRIELEDVSQQLNQSPM 427
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ I G +A GYLNRPD I+ G + Y TGD D +
Sbjct: 372 GXAGELVIEGSLVANGYLNRPDAKGFCDIN---------GRKXYRTGDIVRXDADSSILF 422
Query: 62 IGRSDTMVKIRGYTIELQAIEVALR 86
+GR D VK+RG +EL + +R
Sbjct: 423 LGRKDEQVKVRGQRLELGEVSEVIR 447
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I G LA GY N + F+ P R +R Y TGD G IGR
Sbjct: 361 GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRL---LRAYRTGDRARYDEQGRLRFIGR 417
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
D VK+ GY ++L A+E R P
Sbjct: 418 GDGQVKLNGYRLDLPALEQRFRRQP 442
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I + GP L YLNRPD F + TGD DG ++GR
Sbjct: 354 GEIQVRGPNLFTEYLNRPDATAAAFTED----------GFFRTGDMAVRDPDGYVRIVGR 403
Query: 65 SDT-MVKIRGYTIELQAIEVALRDYPVSR 92
T ++K GY I IE AL ++P R
Sbjct: 404 KATDLIKSGGYKIGAGEIENALLEHPEVR 432
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G GD+YI GP+ A+ Y N + ++ F+ E +R +GD L +G +
Sbjct: 376 GEVGDLYIKGPSAAVMYWNNREKSRATFLG--EWIR---------SGDKYCRLPNGCYVY 424
Query: 62 IGRSDTMVKIRGYTIELQAIEVAL 85
GRSD M+K+ G + +E+ L
Sbjct: 425 AGRSDDMLKVSGQYVSPVEVEMVL 448
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G++ + GP L GY+N P+ K I L +TGD GY + F ++ R
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATK-ELIDEEGWL---------HTGDIGYYDEEKHFFIVDR 439
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
+++K +GY + +E L +P
Sbjct: 440 LKSLIKYKGYQVPPAELESVLLQHP 464
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G++ + GP L GY+N P+ K I L +TGD GY + F ++ R
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATK-ELIDEEGWL---------HTGDIGYYDEEKHFFIVDR 439
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
+++K +GY + +E L +P
Sbjct: 440 LKSLIKYKGYQVPPAELESVLLQHP 464
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G++ + GP L GY+N P+ K I L +TGD GY + F ++ R
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATK-ELIDEEGWL---------HTGDIGYYDEEKHFFIVDR 439
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
+++K +GY + +E L +P
Sbjct: 440 LKSLIKYKGYQVPPAELESVLLQHP 464
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 33 PEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
PE +T Y+TGD + DG +GR+D ++K GY + +E AL +P
Sbjct: 442 PERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP 498
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 2 GTPGDIYIG-GPTLAIG----YLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGD 56
GT GDI I P IG Y++ PD T ++R + GD G D
Sbjct: 398 GTEGDIGIRVKPIRPIGIFSGYVDNPD-------KTAANIRGD----FWLLGDRGIKDED 446
Query: 57 GTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
G F+ +GR+D ++ GY I +E AL ++P
Sbjct: 447 GYFQFMGRADDIINSSGYRIGPSEVENALMEHP 479
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 2 GTPGDIYIG-GPTLAIG----YLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGD 56
GT GDI I P IG Y++ PD T ++R + GD G D
Sbjct: 398 GTEGDIGIRVKPIRPIGIFSGYVDNPD-------KTAANIRGD----FWLLGDRGIKDED 446
Query: 57 GTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
G F+ +GR+D ++ GY I +E AL ++P
Sbjct: 447 GYFQFMGRADDIINSSGYRIGPSEVENALMEHP 479
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G G+I I GP + GY R N+ + + G + + TGD G+ +G
Sbjct: 380 VGESGEIVIRGPNIFKGYWKREKENQECWWYDEK------GRKFFRTGDVGFIDEEGFLH 433
Query: 61 VIGRSDTMVKIRGYTI---ELQAI 81
R ++K +GYTI EL+A+
Sbjct: 434 FQDRVKEVIKYKGYTIAPFELEAL 457
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G++ + GP + GY+N P+ +T + K + ++GD Y DG F ++ R
Sbjct: 423 GELCVKGPMIMKGYVNNPE-------ATSALIDKDGWL---HSGDIAYYDKDGYFFIVDR 472
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
+++K +GY + +E L +P
Sbjct: 473 LKSLIKYKGYQVPPAELESILLQHP 497
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G++ + GP + GY+N P+ +T + K + ++GD Y D F ++ R
Sbjct: 388 GELCVRGPMIMSGYVNNPE-------ATNALIDKDGWL---HSGDIAYWDEDEHFFIVDR 437
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
+++K +GY + +E L +P
Sbjct: 438 LKSLIKYKGYQVAPAELESILLQHP 462
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 32.3 bits (72), Expect = 0.068, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G++ + GP + GY+N P+ +T + K + ++GD Y D F ++ R
Sbjct: 388 GELCVRGPMIMSGYVNNPE-------ATNALIDKDGWL---HSGDIAYWDEDEHFFIVDR 437
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
+++K +GY + +E L +P
Sbjct: 438 LKSLIKYKGYQVAPAELESILLQHP 462
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 32.3 bits (72), Expect = 0.071, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G++ + GP + GY+N P+ +T + K + ++GD Y D F ++ R
Sbjct: 393 GELCVRGPMIMSGYVNNPE-------ATNALIDKDGWL---HSGDIAYWDEDEHFFIVDR 442
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
+++K +GY + +E L +P
Sbjct: 443 LKSLIKYKGYQVAPAELESILLQHP 467
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 32.3 bits (72), Expect = 0.077, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 2 GTPGDIYIGGPTLA-IGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
G G++ + A +GYLN+P+ +T E L+ Y T D +GT
Sbjct: 348 GEEGELIVAASDSAFVGYLNQPE-------ATAEKLQDG----WYRTSDVAVWTPEGTVR 396
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++GR D M+ G I IE L P
Sbjct: 397 ILGRVDDMIISGGENIHPSEIERVLGTAP 425
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLY-NTGDWGYALGDGTFEVIG 63
G+I++ ++A GY N+P+ + F + ++ +Y TGD G+ L + V G
Sbjct: 400 GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSA---IYLRTGDLGF-LHENELYVTG 455
Query: 64 RSDTMVKIRGYTIELQAIEVALRDYPV 90
R ++ I G Q IE +L P+
Sbjct: 456 RIKDLIIIYGKNHYPQDIEFSLXHSPL 482
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 2 GTPGDIYIGGPTLA-IGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
G G++ + A +GYLN+P +T E L+ Y T D +GT
Sbjct: 348 GEEGELIVAASDSAFVGYLNQPQ-------ATAEKLQDG----WYRTSDVAVWTPEGTVR 396
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++GR D M+ G I IE L P
Sbjct: 397 ILGRVDDMIISGGENIHPSEIERVLGTAP 425
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 2 GTPGDIYIGGPTLA-IGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
G G++ + A +GYLN+P +T E L+ Y T D +GT
Sbjct: 348 GEEGELIVAASDSAFVGYLNQPQ-------ATAEKLQDG----WYRTSDVAVWTPEGTVR 396
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++GR D M+ G I IE L P
Sbjct: 397 ILGRVDDMIISGGENIHPSEIERVLGTAP 425
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 2 GTPGDIYIGGPTLA-IGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
G G++ + A +GYLN+P +T E L+ Y T D +GT
Sbjct: 348 GEEGELIVAASDSAFVGYLNQPQ-------ATAEKLQDG----WYRTSDVAVWTPEGTVR 396
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++GR D M+ G I IE L P
Sbjct: 397 ILGRVDDMIISGGENIHPSEIERVLGTAP 425
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GPT+ GY N + F + H TGD G DG
Sbjct: 345 GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHH-----------TGDMGRFDADGYLFY 393
Query: 62 IGRS--DTMVKIRGYTIELQAIEVALRDYP 89
GR+ ++K G + +E AL+ +P
Sbjct: 394 AGRAPEKELIKTGGENVYPAEVEGALKQHP 423
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 45 YNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYPV 90
Y TGD DG ++GR D +V + G+ + IE A+ + P+
Sbjct: 505 YFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPI 550
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRF---ISTPEHLRKTCGVRLYNTGDWGYALGDGT 58
GT G+I++ G +A GY +PD ++ F I TP T TGD G+ + DG
Sbjct: 418 GTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSP--GTPEGPWLRTGDSGF-VTDGK 474
Query: 59 FEVIGR 64
+IGR
Sbjct: 475 MFIIGR 480
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRF---ISTPEHLRKTCGVRLYNTGDWGYALGDGT 58
GT G+I++ G +A GY +PD ++ F I TP T TGD G+ + DG
Sbjct: 418 GTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPS--PGTPEGPWLRTGDSGF-VTDGK 474
Query: 59 FEVIGR 64
+IGR
Sbjct: 475 XFIIGR 480
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 28.9 bits (63), Expect = 0.76, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G++ + GP + GY+N P+ +T + K + ++GD Y D F ++ R
Sbjct: 393 GELSVRGPMIMSGYVNNPE-------ATNALIDKDGWL---HSGDIAYWDEDEHFFIVDR 442
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
+++K +G + +E L +P
Sbjct: 443 LKSLIKYKGCQVAPAELESILLQHP 467
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 2 GTPGDIYIGGPTLA-IGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
G G++ + A +GYLN+P +T E L+ Y T D +GT
Sbjct: 348 GEEGELIVAASDSAFVGYLNQPQ-------ATAEKLQDG----WYRTSDVAVWTPEGTVR 396
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++GR D + G I IE L P
Sbjct: 397 ILGRVDDXIISGGENIHPSEIERVLGTAP 425
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 2 GTPGDIYIGGPTLA-IGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
G G++ + A +GYLN+P +T E L+ Y T D +GT
Sbjct: 348 GEEGELIVAASDSAFVGYLNQPQ-------ATAEKLQDG----WYRTSDVAVWTPEGTVR 396
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++GR M+ G I IE L P
Sbjct: 397 ILGRVPDMIISGGENIHPSEIERVLGTAP 425
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G I + GP + GY P+ K F + G + TGD G G +
Sbjct: 345 GDIGXIEVKGPNVFKGYWRXPEKTKSEF--------RDDG--FFITGDLGKIDERGYVHI 394
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR +V G+ + + IE + P
Sbjct: 395 LGRGKDLVITGGFNVYPKEIESEIDAXP 422
>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol
pdb|1QV6|B Chain B, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol
pdb|1QV7|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,3-Difluorobenzyl Alcohol
pdb|1QV7|B Chain B, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,3-Difluorobenzyl Alcohol
Length = 374
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 23 DLNKMRFIST----------PEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMV 69
D+NK RF P+ +K L + G D +FEVIGR DTMV
Sbjct: 223 DINKDRFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV---DFSFEVIGRLDTMV 276
>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double
Mutant Of Gly 293 Ala And Pro 295 Thr
pdb|1QLJ|A Chain A, Horse Liver Alcohol Dehydrogenase Apo Enzyme Double Mutant
Of Gly 293 Ala And Pro 295 Thr
Length = 374
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 56 DGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
D +FEVIGR DTMV E + V + P S+
Sbjct: 263 DFSFEVIGRLDTMVTALSCCQEAYGVSVIVAVTPDSQ 299
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G + GP GY P+ N F Y +GD DG V
Sbjct: 385 GEIGMLATRGPYTFCGYYQSPEHNSQVFDED----------NYYYSGDLVQRTPDGNLRV 434
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR + G I + IE + +P
Sbjct: 435 VGRIKDQINRGGEKIASEEIEKLILLHP 462
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.144 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,136,895
Number of Sequences: 62578
Number of extensions: 121791
Number of successful extensions: 340
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 45
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)