Query psy4547
Match_columns 92
No_of_seqs 152 out of 1385
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 19:51:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 99.9 1.5E-27 5.3E-32 160.1 6.7 82 1-92 344-425 (503)
2 4dg8_A PA1221; ANL superfamily 99.9 2.4E-27 8.3E-32 162.8 6.0 89 1-92 357-445 (620)
3 1amu_A GRSA, gramicidin synthe 99.9 2.9E-27 1E-31 160.7 6.3 88 1-92 369-456 (563)
4 1mdb_A 2,3-dihydroxybenzoate-A 99.9 1.6E-27 5.3E-32 161.1 4.8 82 1-92 375-456 (539)
5 3ni2_A 4-coumarate:COA ligase; 99.9 3.4E-27 1.2E-31 159.3 6.3 82 1-92 379-460 (536)
6 3g7s_A Long-chain-fatty-acid-- 99.9 4.6E-27 1.6E-31 159.0 6.8 86 1-92 380-465 (549)
7 3rg2_A Enterobactin synthase c 99.9 4.3E-27 1.5E-31 161.0 6.5 82 1-92 379-460 (617)
8 4gr5_A Non-ribosomal peptide s 99.9 1.6E-27 5.6E-32 161.9 4.1 90 1-92 406-495 (570)
9 2vsq_A Surfactin synthetase su 99.9 2E-26 6.7E-31 167.6 7.5 88 1-92 800-887 (1304)
10 3o83_A Peptide arylation enzym 99.9 3.8E-27 1.3E-31 159.4 3.6 82 1-92 384-465 (544)
11 3nyq_A Malonyl-COA ligase; A/B 99.9 2.5E-26 8.4E-31 154.4 6.5 81 2-92 351-432 (505)
12 1v25_A Long-chain-fatty-acid-C 99.9 1.7E-26 5.8E-31 156.1 5.5 80 3-92 382-461 (541)
13 3rix_A Luciferase, luciferin 4 99.9 5.9E-27 2E-31 158.5 3.1 82 1-92 384-465 (550)
14 2d1s_A Luciferase, luciferin 4 99.9 1.1E-26 3.6E-31 157.4 3.2 82 1-92 386-467 (548)
15 1t5h_X 4-chlorobenzoyl COA lig 99.9 4.4E-26 1.5E-30 152.9 6.2 81 1-92 347-428 (504)
16 3l8c_A D-alanine--poly(phospho 99.9 2E-26 6.8E-31 154.8 3.9 85 1-92 345-429 (521)
17 3r44_A Fatty acyl COA syntheta 99.9 6.2E-26 2.1E-30 152.7 5.5 78 4-92 362-439 (517)
18 3etc_A AMP-binding protein; ad 99.9 1E-25 3.5E-30 153.6 6.5 81 1-92 416-501 (580)
19 3fce_A D-alanine--poly(phospho 99.9 1.5E-25 5.3E-30 150.4 6.1 84 1-92 342-425 (512)
20 3e7w_A D-alanine--poly(phospho 99.9 2.1E-25 7.2E-30 149.8 6.5 84 1-92 341-424 (511)
21 3ite_A SIDN siderophore synthe 99.9 1.4E-25 4.7E-30 152.0 5.2 80 1-89 371-450 (562)
22 1pg4_A Acetyl-COA synthetase; 99.9 1.6E-25 5.3E-30 154.4 5.3 83 2-92 459-543 (652)
23 3c5e_A Acyl-coenzyme A synthet 99.9 2.7E-25 9.1E-30 151.3 6.4 81 1-92 397-482 (570)
24 3tsy_A Fusion protein 4-coumar 99.9 9E-26 3.1E-30 160.6 3.6 82 1-92 426-507 (979)
25 3ipl_A 2-succinylbenzoate--COA 99.9 5.6E-25 1.9E-29 147.3 7.3 80 1-92 345-424 (501)
26 3ivr_A Putative long-chain-fat 99.9 9.6E-26 3.3E-30 151.3 3.2 81 1-92 344-426 (509)
27 3gqw_A Fatty acid AMP ligase; 99.9 4E-25 1.4E-29 149.5 6.2 80 1-92 408-487 (576)
28 2v7b_A Benzoate-coenzyme A lig 99.9 1.5E-25 5E-30 151.0 3.9 81 1-92 375-455 (529)
29 3kxw_A Saframycin MX1 syntheta 99.9 1.2E-25 4.1E-30 152.7 0.1 88 1-91 396-484 (590)
30 1ry2_A Acetyl-coenzyme A synth 99.9 6E-25 2.1E-29 151.8 2.7 83 2-92 468-552 (663)
31 4gs5_A Acyl-COA synthetase (AM 99.7 1.9E-18 6.5E-23 112.3 5.0 81 2-92 196-279 (358)
32 3qov_A Phenylacetate-coenzyme 99.7 3.1E-18 1E-22 113.1 4.7 69 1-92 280-357 (436)
33 2y4o_A Phenylacetate-coenzyme 99.7 7.4E-18 2.5E-22 111.5 4.8 49 43-91 306-360 (443)
34 2y27_A Phenylacetate-coenzyme 99.7 8.7E-18 3E-22 111.0 4.6 50 43-92 304-359 (437)
35 3t5a_A Long-chain-fatty-acid-- 99.6 9.7E-17 3.3E-21 106.6 2.8 63 1-64 417-480 (480)
36 4eql_A 4-substituted benzoates 98.2 1.2E-06 4E-11 60.5 4.6 44 45-88 400-447 (581)
37 4b2g_A GH3-1 auxin conjugating 98.2 1E-06 3.5E-11 61.0 3.8 43 45-87 412-458 (609)
38 4epl_A Jasmonic acid-amido syn 98.0 3.8E-06 1.3E-10 57.9 3.6 43 45-87 407-453 (581)
39 3hgu_A EHPF; phenazine, antibi 95.2 0.014 4.9E-07 37.4 2.9 31 44-74 329-368 (369)
40 1smp_I Erwinia chrysanthemi in 62.5 13 0.00044 19.9 3.6 26 42-67 56-83 (101)
41 2kke_A Uncharacterized protein 55.8 13 0.00045 16.6 2.4 17 74-90 18-34 (53)
42 1jiw_I Proteinase inhibitor; p 53.5 16 0.00055 19.7 3.0 26 42-67 59-86 (106)
43 2b3g_B Cellular tumor antigen 42.7 14 0.00049 14.5 1.3 15 75-89 12-26 (28)
44 1kwa_A Hcask/LIN-2 protein; PD 40.9 30 0.001 17.2 2.8 24 66-89 48-74 (88)
45 3bpd_A Uncharacterized protein 37.8 45 0.0015 17.8 3.1 23 69-91 53-75 (100)
46 2ego_A General receptor for ph 35.2 45 0.0015 16.7 3.0 24 66-89 59-85 (96)
47 2pa1_A PDZ and LIM domain prot 34.6 43 0.0015 16.3 2.8 24 66-89 48-74 (87)
48 1wqc_A OMTX1; toxin; NMR {Opis 34.6 18 0.00063 14.1 1.0 12 81-92 4-15 (26)
49 3gge_A PDZ domain-containing p 33.5 54 0.0018 17.1 3.1 25 66-90 51-78 (95)
50 3e17_A Tight junction protein 31.9 51 0.0017 16.3 3.1 24 66-89 44-70 (88)
51 2z17_A Pleckstrin homology SEC 31.7 45 0.0015 17.0 2.7 24 66-89 70-96 (104)
52 2vsp_A PDZ domain-containing p 31.4 49 0.0017 16.3 2.7 23 66-88 49-74 (91)
53 2jxo_A Ezrin-radixin-moesin-bi 31.1 54 0.0019 16.4 3.0 24 66-89 55-81 (98)
54 3uji_P Envelope glycoprotein G 29.7 29 0.00098 12.7 1.3 8 43-50 14-21 (23)
55 3u5r_E Uncharacterized protein 29.0 31 0.0011 20.2 1.9 42 46-87 143-184 (218)
56 3mly_P HIV-1 GP120 third varia 29.0 30 0.001 12.7 1.3 8 43-50 14-21 (23)
57 3uan_A Heparan sulfate glucosa 28.9 20 0.00067 22.2 1.0 28 64-91 15-42 (269)
58 3hhe_A Ribose-5-phosphate isom 28.5 54 0.0019 20.5 2.9 41 44-91 184-225 (255)
59 3pur_A Lysine-specific demethy 28.4 1.1E+02 0.0039 21.2 4.7 42 44-86 369-410 (528)
60 1ujv_A Membrane associated gua 27.4 64 0.0022 16.2 2.8 24 66-89 52-78 (96)
61 1y7n_A Amyloid beta A4 precurs 27.3 65 0.0022 16.1 3.0 23 66-88 53-78 (90)
62 4evu_A Putative periplasmic pr 27.1 30 0.001 17.3 1.3 21 67-87 21-41 (72)
63 3rnl_A Sulfotransferase; struc 26.6 24 0.00082 22.3 1.1 28 64-91 7-34 (311)
64 2l6o_A Uncharacterized protein 26.6 84 0.0029 17.1 3.3 41 45-89 45-86 (114)
65 2e7k_A Maguk P55 subfamily mem 25.6 70 0.0024 15.8 3.1 23 66-88 52-76 (91)
66 1ueq_A Membrane associated gua 25.3 78 0.0027 16.7 3.0 24 66-89 67-93 (123)
67 3o46_A Maguk P55 subfamily mem 25.3 70 0.0024 15.7 2.9 24 66-89 51-77 (93)
68 3dqg_A Heat shock 70 kDa prote 25.0 61 0.0021 18.2 2.6 37 51-87 87-129 (151)
69 2yt7_A Amyloid beta A4 precurs 24.9 53 0.0018 16.6 2.2 23 66-88 60-85 (101)
70 3kv4_A PHD finger protein 8; e 24.8 1.7E+02 0.0057 19.9 5.2 43 43-86 303-345 (447)
71 1vb7_A PDZ and LIM domain 2; P 24.7 73 0.0025 15.8 3.0 23 66-88 52-77 (94)
72 2i04_A Membrane-associated gua 24.6 69 0.0024 15.4 3.0 23 66-88 48-73 (85)
73 1zx8_A Hypothetical protein TM 23.5 38 0.0013 19.0 1.4 19 44-62 72-90 (136)
74 2eaq_A LIM domain only protein 22.3 80 0.0027 15.3 2.7 22 66-87 50-74 (90)
75 3kv5_D JMJC domain-containing 22.1 1.3E+02 0.0045 20.5 4.1 43 43-86 338-380 (488)
76 1hf2_A MINC, septum site-deter 22.0 1.1E+02 0.0038 18.2 3.4 32 40-71 110-150 (210)
77 3bd9_A Heparan sulfate glucosa 21.5 38 0.0013 20.7 1.3 28 64-91 23-50 (280)
78 3k3o_A PHF8, PHD finger protei 21.5 1.5E+02 0.005 19.6 4.1 43 43-86 219-261 (371)
79 2ejy_A 55 kDa erythrocyte memb 21.4 60 0.002 16.6 1.9 23 66-88 59-84 (97)
80 3qik_A Phosphatidylinositol 3, 20.7 1.1E+02 0.0037 16.2 2.9 22 66-87 61-85 (101)
81 3kv9_A JMJC domain-containing 20.1 1.6E+02 0.0055 19.6 4.1 43 43-86 247-289 (397)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.94 E-value=1.5e-27 Score=160.08 Aligned_cols=82 Identities=27% Similarity=0.457 Sum_probs=77.4
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++||.++.|||++++.+.+.|..+ +||+|||+++++++|.++|+||+||+||++|++|+|.|
T Consensus 344 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~----------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e 413 (503)
T 4fuq_A 344 RGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDD----------GFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKE 413 (503)
T ss_dssp TTCCEEEEEESTTSCCCBTTCHHHHHHTBCTT----------SCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHH
T ss_pred CCCceEEEEECCchhhhhcCChhhhHhhhCCC----------CCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHH
Confidence 47899999999999999999999999888655 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 414 IE~~l~~~p~V~ 425 (503)
T 4fuq_A 414 IESEIDAMPGVV 425 (503)
T ss_dssp HHHHHHTSTTEE
T ss_pred HHHHHHhCCCee
Confidence 999999999873
No 2
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.94 E-value=2.4e-27 Score=162.77 Aligned_cols=89 Identities=33% Similarity=0.477 Sum_probs=79.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+|+||++++|||++++.+.+.|...+.. ....+||+|||++++++||.|+|+||+|++||++|++|+|.|
T Consensus 357 ~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~---~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~e 433 (620)
T 4dg8_A 357 PDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYR---GRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPA 433 (620)
T ss_dssp SSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEET---TEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHH
T ss_pred CCCceEEEEeccccccccCCChhhhhhhhccCCCC---CCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHH
Confidence 47889999999999999999999999999775421 111279999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 434 IE~~l~~~p~V~ 445 (620)
T 4dg8_A 434 LEQRFRRQPGIL 445 (620)
T ss_dssp HHHHHHTSTTEE
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
No 3
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.94 E-value=2.9e-27 Score=160.70 Aligned_cols=88 Identities=41% Similarity=0.678 Sum_probs=79.2
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++||.++.|||++++.+.+.|.+.+.. .+.+||+|||++++|++|+|+|+||+||+||++|++|+|.|
T Consensus 369 ~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~----~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~e 444 (563)
T 1amu_A 369 VGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFV----PGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEE 444 (563)
T ss_dssp TTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSS----TTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred CCCcEEEEEechhhChhhCCCchhhhhhcccCCCC----CCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHH
Confidence 47889999999999999999999998888765421 23379999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 445 IE~~l~~~p~V~ 456 (563)
T 1amu_A 445 VESILLKHMYIS 456 (563)
T ss_dssp HHHHHTTSTTEE
T ss_pred HHHHHHhCCCcc
Confidence 999999999873
No 4
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.94 E-value=1.6e-27 Score=161.13 Aligned_cols=82 Identities=26% Similarity=0.392 Sum_probs=77.1
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++||.++.|||++++.+.+.|..+ +||+|||+++++++|+|+|+||+||+||++|++|+|.|
T Consensus 375 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~----------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e 444 (539)
T 1mdb_A 375 PGETGHLLTRGPYTIRGYYKAEEHNAASFTED----------GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE 444 (539)
T ss_dssp TTCCEEEEEECTTSCSSCTTCHHHHHHHBCTT----------SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHH
T ss_pred CCCcceEEeeCcccchhhcCChhhhhhhccCC----------CCeecCceEEECCCCcEEEeccccceEEECCEEECHHH
Confidence 47889999999999999999999988888654 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 445 IE~~l~~~p~V~ 456 (539)
T 1mdb_A 445 VENHLLAHPAVH 456 (539)
T ss_dssp HHHHHTTSTTEE
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.94 E-value=3.4e-27 Score=159.30 Aligned_cols=82 Identities=27% Similarity=0.488 Sum_probs=76.8
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++||.++.|||++++.+...|..+ +||+|||+++++++|+++|+||+||+||++|++|+|.|
T Consensus 379 ~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~----------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e 448 (536)
T 3ni2_A 379 RNQPGEICIRGDQIMKGYLNDPEATSRTIDKE----------GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAE 448 (536)
T ss_dssp TTCCEEEEEESTTSCSEETTCHHHHHHHBCTT----------SCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHH
T ss_pred CCCccEEEEeCcccchhhcCChhHHHhhccCC----------CceEcccEEEEcCCceEEEEecccceEEECCEEECHHH
Confidence 47889999999999999999999888887554 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 449 IE~~l~~~p~V~ 460 (536)
T 3ni2_A 449 LEALLIAHPEIS 460 (536)
T ss_dssp HHHHHHTSTTEE
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.94 E-value=4.6e-27 Score=159.02 Aligned_cols=86 Identities=28% Similarity=0.480 Sum_probs=65.8
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+|+||.++.|||++++.+.+.|..+. .+.+||+|||+++++++|.|+|+||+||+||++|++|+|.|
T Consensus 380 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~------~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e 453 (549)
T 3g7s_A 380 VGESGEIVIRGPNIFKGYWKREKENQECWWYDE------KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFE 453 (549)
T ss_dssp TTCCEEEEEESTTSCSEETTCTTGGGTSEEECT------TCCEEEEEEEEEEECTTSCEEEEEEC------------CHH
T ss_pred CCCceEEEEECcchhhhhCCChhhhhhhhhccC------CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHH
Confidence 478999999999999999999999998885332 12359999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 454 IE~~l~~~p~V~ 465 (549)
T 3g7s_A 454 LEALLMKHEAVM 465 (549)
T ss_dssp HHHHHTTSTTEE
T ss_pred HHHHHHhCCCee
Confidence 999999999873
No 7
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.94 E-value=4.3e-27 Score=161.05 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=77.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+|+||++++|||++++.+.+.|..+ +||+|||++++++||.++|+||+|++||++|++|+|.|
T Consensus 379 ~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~----------~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~e 448 (617)
T 3rg2_A 379 QGEVGRLMTRGPYTFRGYYKSPQHNASAFDAN----------GFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEE 448 (617)
T ss_dssp TTCCEEEEEECSSSCSCCTTCHHHHHHHBCTT----------SCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHH
T ss_pred CCCceEEEecCccccchhcCChhhhhhccCCC----------CceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHH
Confidence 47899999999999999999999999999665 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 449 IE~~l~~~p~V~ 460 (617)
T 3rg2_A 449 IENLLLRHPAVI 460 (617)
T ss_dssp HHHHHTTSTTEE
T ss_pred HHHHHHhCCCee
Confidence 999999999873
No 8
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.94 E-value=1.6e-27 Score=161.87 Aligned_cols=90 Identities=40% Similarity=0.713 Sum_probs=53.6
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+|+||.++.|||++++.+.+.|..+++.. ..+.+||+|||++++|++|+|+|+||+||+||++|++|+|.|
T Consensus 406 ~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~--~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~e 483 (570)
T 4gr5_A 406 NGALGELYVAGAGLAHGYVSRPALTAERFVADPFAG--PGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGE 483 (570)
T ss_dssp TTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCC--SSCCEEEEEEEEEEECTTSCEEEEEC----------------
T ss_pred CCCcEEEEEeecccchhcCCCchhhhcccccCCCCC--CCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHH
Confidence 478899999999999999999999998887654322 223479999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 484 IE~~l~~~p~V~ 495 (570)
T 4gr5_A 484 VEARLVGHPAVR 495 (570)
T ss_dssp ------------
T ss_pred HHHHHhcCCCcc
Confidence 999999999884
No 9
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.93 E-value=2e-26 Score=167.63 Aligned_cols=88 Identities=47% Similarity=0.740 Sum_probs=81.4
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+|+|+++++|||++++.|.+.|..+++. .+.+||+|||++++++||.|+|+||+|++||++|++|+|.|
T Consensus 800 ~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~----~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~e 875 (1304)
T 2vsq_A 800 FGAVGELCISGMGVSKGYVNRADLTKEKFIENPFK----PGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEE 875 (1304)
T ss_dssp TTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTS----TTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred CCCceEEEEeccccCccccCCcccchhhhccCCCC----CCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHH
Confidence 47899999999999999999999999999877642 24479999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||+|+
T Consensus 876 IE~~l~~~p~V~ 887 (1304)
T 2vsq_A 876 IEKQLQEYPGVK 887 (1304)
T ss_dssp HHHHHHHSSSCC
T ss_pred HHHHHHhCCCCc
Confidence 999999999985
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.93 E-value=3.8e-27 Score=159.38 Aligned_cols=82 Identities=27% Similarity=0.367 Sum_probs=52.3
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++||.++.|||++++.+.+.|..+ +||+|||+++++++|.++|+||+||+||++|++|+|.|
T Consensus 384 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~----------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e 453 (544)
T 3o83_A 384 EGEIGMLATRGPYTFCGYYQSPEHNSQVFDED----------NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEE 453 (544)
T ss_dssp TTCCEEEEEECTTSCSCCTTCHHHHHHHBCTT----------CCEEEEEEEEECTTSCEEEEEEEC--------------
T ss_pred CCCeeEEEEecCCcchhhcCChhhhhhhCCCC----------CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHH
Confidence 47889999999999999999999998888654 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 454 IE~~l~~~p~V~ 465 (544)
T 3o83_A 454 IEKLILLHPEVM 465 (544)
T ss_dssp ------------
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
No 11
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.93 E-value=2.5e-26 Score=154.41 Aligned_cols=81 Identities=36% Similarity=0.600 Sum_probs=76.2
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEeccc-CCeEEEccEEechHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRS-DTMVKIRGYTIELQA 80 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~-~~~i~~~G~~v~~~~ 80 (92)
|++|||+++||.++.|||++++.+...|..+ +||+|||+++++++|.++|+||+ |++||++|++|+|.|
T Consensus 351 g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~----------g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~e 420 (505)
T 3nyq_A 351 ESVGEIQVRGPNLFTEYLNRPDATAAAFTED----------GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE 420 (505)
T ss_dssp CCCEEEEEESTTSCCEETTCHHHHHHTBCTT----------SCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHH
T ss_pred CceEEEEEecCchhhhhCCChhHhhhhhcCC----------CCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHH
Confidence 6889999999999999999999999988655 69999999999999999999997 699999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 421 IE~~l~~~p~V~ 432 (505)
T 3nyq_A 421 IENALLEHPEVR 432 (505)
T ss_dssp HHHHHTTSTTEE
T ss_pred HHHHHHHCcCcc
Confidence 999999999874
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.93 E-value=1.7e-26 Score=156.13 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=68.4
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIE 82 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE 82 (92)
+.|||+++||.++.|||++++.+.+.|..+ +||+|||++++|++|+++|+||+||+||++|++|+|.|||
T Consensus 382 ~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~----------g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE 451 (541)
T 1v25_A 382 ALGEVQLKGPWITGGYYGNEEATRSALTPD----------GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLE 451 (541)
T ss_dssp CCEEEEEESTTSBSSCBTCHHHHHTTBCTT----------SCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHH
T ss_pred cceEEEEeCcchhccccCChhhhhhhccCC----------CCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHH
Confidence 579999999999999999999998888644 6999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCC
Q psy4547 83 VALRDYPVSR 92 (92)
Q Consensus 83 ~~l~~~~~V~ 92 (92)
++|.+||.|+
T Consensus 452 ~~l~~~p~V~ 461 (541)
T 1v25_A 452 NALMGHPKVK 461 (541)
T ss_dssp CC--------
T ss_pred HHHHhCCCce
Confidence 9999999884
No 13
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.93 E-value=5.9e-27 Score=158.52 Aligned_cols=82 Identities=23% Similarity=0.462 Sum_probs=47.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+|+||.++.|||++++.+...|..+ +||+|||+++++++|+++|+||+||+||++|++|+|.|
T Consensus 384 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~----------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e 453 (550)
T 3rix_A 384 VNQRGELCVRGPMIMSGYVNNPEATNALIDKD----------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 453 (550)
T ss_dssp TTCCEEEEEESTTSCSEETTCHHHHHHHBCTT----------SCEEEEEEEEECTTCCEEEC------------------
T ss_pred CCCCeEEEEeCCCcchhhcCChhhhhhhcCCC----------CCeecCcEEEEeCCceEEEEecchheeEECCEEECHHH
Confidence 47899999999999999999999888877544 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 454 IE~~l~~~p~V~ 465 (550)
T 3rix_A 454 LESILLQHPNIF 465 (550)
T ss_dssp ------------
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
No 14
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.92 E-value=1.1e-26 Score=157.39 Aligned_cols=82 Identities=27% Similarity=0.485 Sum_probs=76.4
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++||.++.|||++++.+.+.|..+ +||+|||+++++++|.++|+||+||+||++|.+|+|.|
T Consensus 386 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~----------g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~e 455 (548)
T 2d1s_A 386 PNRRGEVCVKGPMLMKGYVNNPEATKELIDEE----------GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455 (548)
T ss_dssp TTCCEEEEEESTTSCSEETTCHHHHHHHBCTT----------SCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHH
T ss_pred CCCCeEEEECCHHHhhhhcCChHHhhhcccCC----------cEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHH
Confidence 47889999999999999999999888887543 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 456 IE~~l~~~p~V~ 467 (548)
T 2d1s_A 456 LESVLLQHPSIF 467 (548)
T ss_dssp HHHHHHTSTTEE
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
No 15
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.92 E-value=4.4e-26 Score=152.87 Aligned_cols=81 Identities=27% Similarity=0.447 Sum_probs=75.5
Q ss_pred CCCceeEEEe-cCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechH
Q psy4547 1 MGTPGDIYIG-GPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQ 79 (92)
Q Consensus 1 ~g~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~ 79 (92)
+|+.|||+++ +|.++.|||++++.+.+.|.+ +||+|||++++++||+++|+||.||+||++|++|+|.
T Consensus 347 ~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~-----------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 415 (504)
T 1t5h_X 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQD-----------GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415 (504)
T ss_dssp TTCCEEEEEECCTTSCCCBTTCHHHHHHHEET-----------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHH
T ss_pred CCCcceEEEeCCceeeceecCCchhhhhhhcC-----------CccccCcEEEECCCceEEEeCcccCEEEECCEEECHH
Confidence 4788999999 899999999999988888832 5999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q psy4547 80 AIEVALRDYPVSR 92 (92)
Q Consensus 80 ~iE~~l~~~~~V~ 92 (92)
|||++|.+||.|+
T Consensus 416 eIE~~l~~~p~V~ 428 (504)
T 1t5h_X 416 EIERVLGTAPGVT 428 (504)
T ss_dssp HHHHHHTTSTTEE
T ss_pred HHHHHHHhCCCcc
Confidence 9999999999874
No 16
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.92 E-value=2e-26 Score=154.85 Aligned_cols=85 Identities=34% Similarity=0.576 Sum_probs=72.2
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++||.++.|||++++.+.+.|... .+.+||+|||++++|++|+++|.||+||+||++|++|+|.+
T Consensus 345 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~-------~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~e 417 (521)
T 3l8c_A 345 SGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTF-------KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELED 417 (521)
T ss_dssp TTCCEEEEEESTTSCSCBTTCHHHHHHHEEEE-------TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHH
T ss_pred CCCceEEEecccccChhhcCCchHhhccCcCC-------CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHH
Confidence 47889999999999999999999988887532 12379999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 418 IE~~l~~~p~V~ 429 (521)
T 3l8c_A 418 VSQQLNQSPMVA 429 (521)
T ss_dssp HHHHHHTSTTEE
T ss_pred HHHHHHcCCCcc
Confidence 999999999873
No 17
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.92 E-value=6.2e-26 Score=152.72 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=73.9
Q ss_pred ceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHH
Q psy4547 4 PGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEV 83 (92)
Q Consensus 4 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~ 83 (92)
.|||+++||.++.|||++++.+...|.+ +||+|||+++++++|+|+|+||+||+||++|++|+|.|||+
T Consensus 362 ~GEl~v~g~~v~~GY~~~p~~t~~~f~~-----------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~ 430 (517)
T 3r44_A 362 EGEVVIKSDILLKEYWNRPEATRDAFDN-----------GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIES 430 (517)
T ss_dssp EEEEEEEETTSCSEETTCHHHHHHTEET-----------TEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHH
T ss_pred CeEEEEeCcchhhhhCCChhhhHhhhcC-----------CCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHH
Confidence 6999999999999999999999888843 59999999999999999999999999999999999999999
Q ss_pred HHhhCCCCC
Q psy4547 84 ALRDYPVSR 92 (92)
Q Consensus 84 ~l~~~~~V~ 92 (92)
+|.+||+|+
T Consensus 431 ~l~~~p~V~ 439 (517)
T 3r44_A 431 VIIGVPGVS 439 (517)
T ss_dssp HHTTSTTEE
T ss_pred HHHhCCCEe
Confidence 999999873
No 18
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.92 E-value=1e-25 Score=153.61 Aligned_cols=81 Identities=28% Similarity=0.483 Sum_probs=75.5
Q ss_pred CCCceeEEEec-----CcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEE
Q psy4547 1 MGTPGDIYIGG-----PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYT 75 (92)
Q Consensus 1 ~g~~Gel~v~~-----~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~ 75 (92)
+|+.|||++++ +.++.|||++++.+.+.|.+ +||+|||++++|+||+|+|+||+||+||++|++
T Consensus 416 ~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~-----------gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~ 484 (580)
T 3etc_A 416 VGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD-----------GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYK 484 (580)
T ss_dssp TTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEET-----------TEEEEEEEEEECTTSCEEEEEESSSCEEETTEE
T ss_pred CCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCC-----------CEEecCcEEEECCCCcEEEEecCCCEEEECCEE
Confidence 47899999996 78999999999999888853 599999999999999999999999999999999
Q ss_pred echHHHHHHHhhCCCCC
Q psy4547 76 IELQAIEVALRDYPVSR 92 (92)
Q Consensus 76 v~~~~iE~~l~~~~~V~ 92 (92)
|+|.|||++|.+||.|+
T Consensus 485 I~p~eIE~~l~~~p~V~ 501 (580)
T 3etc_A 485 VGPFEVESALIQHPAVL 501 (580)
T ss_dssp ECHHHHHHHHTTSTTEE
T ss_pred ECHHHHHHHHHhCCCee
Confidence 99999999999999873
No 19
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.92 E-value=1.5e-25 Score=150.39 Aligned_cols=84 Identities=39% Similarity=0.681 Sum_probs=75.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++||+++.|||++++.+.+.|... .+.+||+|||++++ ++|+++|.||.||+||++|++|+|.+
T Consensus 342 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~-------~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~e 413 (512)
T 3fce_A 342 DGEKGEIVIVGPSVSVGYLGSPELTEKAFTMI-------DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEE 413 (512)
T ss_dssp TTSCEEEEEESTTSCSCBTTCHHHHHHHEEEE-------TTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHH
T ss_pred CCCeEEEEEeccccChhhcCCchhhhhccccC-------CCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHH
Confidence 47889999999999999999999888887531 12379999999999 79999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 414 IE~~l~~~p~V~ 425 (512)
T 3fce_A 414 IEHHLRACSYVE 425 (512)
T ss_dssp HHHHHHHSTTEE
T ss_pred HHHHHHhCCCcc
Confidence 999999999873
No 20
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.92 E-value=2.1e-25 Score=149.79 Aligned_cols=84 Identities=39% Similarity=0.705 Sum_probs=75.5
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++||.++.|||++++.+.+.|.... +..||+|||++++ +||.|+|+||+||+||++|++|+|.|
T Consensus 341 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~-------g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~e 412 (511)
T 3e7w_A 341 EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHE-------GQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEE 412 (511)
T ss_dssp TTCCEEEEEESTTSCCCBTTCHHHHHHHEEESS-------SSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHH
T ss_pred CCCceEEEEecCccChhhCCCcccchhhhcCCC-------CCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHH
Confidence 478899999999999999999999988885431 2258999999999 59999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 413 IE~~l~~~p~V~ 424 (511)
T 3e7w_A 413 IEFHVRQSQYVR 424 (511)
T ss_dssp HHHHHHHSTTEE
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
No 21
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.92 E-value=1.4e-25 Score=151.98 Aligned_cols=80 Identities=36% Similarity=0.608 Sum_probs=48.5
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++||.++.|||++++.+...+.+ +.+||+|||++++|++|+|+|+||+||+||++|++|+|.|
T Consensus 371 ~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~---------g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~e 441 (562)
T 3ite_A 371 KGMAGELVIEGSLVANGYLNRPDAKGFCDIN---------GRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGE 441 (562)
T ss_dssp TTSCEEEEEESTTSCCEESSCTTCCSEEEET---------TEEEEEEEEEEEECTTSCEEEEEEC---------------
T ss_pred CCCceEEEEeccccchhhCCCccccccccCC---------CCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHH
Confidence 4788999999999999999999876544322 2369999999999999999999999999999999999999
Q ss_pred HHHHHhhCC
Q psy4547 81 IEVALRDYP 89 (92)
Q Consensus 81 iE~~l~~~~ 89 (92)
||++|.+|+
T Consensus 442 IE~~l~~~~ 450 (562)
T 3ite_A 442 VSEVIRSLS 450 (562)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 999999873
No 22
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.91 E-value=1.6e-25 Score=154.35 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=74.0
Q ss_pred CCceeEEEec--CcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechH
Q psy4547 2 GTPGDIYIGG--PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQ 79 (92)
Q Consensus 2 g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~ 79 (92)
|+.|||+|++ |++++|||++++.+...+.... .+||+|||++++|+||+|+|+||+||+||++|++|+|.
T Consensus 459 g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~--------~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~ 530 (652)
T 1pg4_A 459 ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTF--------KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTA 530 (652)
T ss_dssp SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSS--------TTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHH
T ss_pred CceEEEEEccCCCchhhhhcCCHHHHHhhhhhcC--------CCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHH
Confidence 6789999999 7899999999987766554321 15999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q psy4547 80 AIEVALRDYPVSR 92 (92)
Q Consensus 80 ~iE~~l~~~~~V~ 92 (92)
|||++|.+||.|+
T Consensus 531 eIE~~l~~~p~V~ 543 (652)
T 1pg4_A 531 EIESALVAHPKIA 543 (652)
T ss_dssp HHHHHHHHSTTEE
T ss_pred HHHHHHHhCCCcc
Confidence 9999999999874
No 23
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.91 E-value=2.7e-25 Score=151.28 Aligned_cols=81 Identities=32% Similarity=0.516 Sum_probs=75.5
Q ss_pred CCCceeEEEe-----cCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEE
Q psy4547 1 MGTPGDIYIG-----GPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYT 75 (92)
Q Consensus 1 ~g~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~ 75 (92)
+|++|||+++ ||.++.|||++++.+...|.. +||+|||+++++++|+|+|+||+||+||++|.+
T Consensus 397 ~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~-----------~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~ 465 (570)
T 3c5e_A 397 PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRG-----------DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYR 465 (570)
T ss_dssp TTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEET-----------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEE
T ss_pred CCCCCeeEEeccCCCCchhhccccCChhHhhhhhcC-----------CccccceeEEEcCCceEEEEecCCCEEEECCEE
Confidence 4789999999 999999999999988888753 599999999999999999999999999999999
Q ss_pred echHHHHHHHhhCCCCC
Q psy4547 76 IELQAIEVALRDYPVSR 92 (92)
Q Consensus 76 v~~~~iE~~l~~~~~V~ 92 (92)
|+|.|||++|.+||.|+
T Consensus 466 V~p~eIE~~l~~~p~V~ 482 (570)
T 3c5e_A 466 IGPSEVENALMEHPAVV 482 (570)
T ss_dssp ECHHHHHHHHHTSTTEE
T ss_pred ECHHHHHHHHHhCCCcc
Confidence 99999999999999874
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.91 E-value=9e-26 Score=160.63 Aligned_cols=82 Identities=26% Similarity=0.439 Sum_probs=53.0
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+|+||.+++|||++++.+.+.|..+ +||+|||+++++++|.|+|+||+||+||++|++|+|.|
T Consensus 426 ~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~----------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~e 495 (979)
T 3tsy_A 426 RNQPGEICIRGHQIMKGYLNNPAATAETIDKD----------GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAE 495 (979)
T ss_dssp TTCCEEEEEESTTSCSEETTCHHHHHHHBCTT----------SCEEEEEEEEECTTSCEEEEEESCC-------------
T ss_pred CCCccEEEEECCCccccccCChhhhhhhccCC----------CcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHH
Confidence 47889999999999999999999998888554 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 496 IE~~l~~~p~V~ 507 (979)
T 3tsy_A 496 LEALLIGHPDIT 507 (979)
T ss_dssp ------------
T ss_pred HHHHHHhCCCcc
Confidence 999999999884
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.91 E-value=5.6e-25 Score=147.25 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=73.0
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++||.+++|||++++.+.. |. + +||+|||+++++++|.++|.||.||+||++|.+|+|.+
T Consensus 345 ~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~-~----------g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~e 412 (501)
T 3ipl_A 345 KEGHGELMIKGANVMNGYLYPTDLTGT-FE-N----------GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQ 412 (501)
T ss_dssp SSCCEEEEEESTTSCSCCSBSTTCCCS-EE-T----------TEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHH
T ss_pred CCCccEEEEeccchhhhhCcChhhcch-hc-C----------CceecCCEEEEcCCCeEEEEccccceEEECCEEECHHH
Confidence 367899999999999999999987765 42 2 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||+|+
T Consensus 413 iE~~l~~~p~V~ 424 (501)
T 3ipl_A 413 IETVAKQFPGIS 424 (501)
T ss_dssp HHHHHTTSTTEE
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
No 26
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.91 E-value=9.6e-26 Score=151.29 Aligned_cols=81 Identities=30% Similarity=0.439 Sum_probs=50.3
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEeccc--CCeEEEccEEech
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRS--DTMVKIRGYTIEL 78 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~--~~~i~~~G~~v~~ 78 (92)
+|++|||+++||.++.|||++++.+...|.+ +||+|||+++++++|.++|+||. +|+||++|++|+|
T Consensus 344 ~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~-----------g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p 412 (509)
T 3ivr_A 344 PGEVGEIVLRGPTVFKGYWNNAAATQHAFRN-----------GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYP 412 (509)
T ss_dssp TTCCEEEEEESTTSCCEETTCHHHHHHHTGG-----------GSEEEEEEEEECTTSCEEEEEEC---------------
T ss_pred CCCceEEEEecCCccccccCCHHHhHHHhhc-----------CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECH
Confidence 4788999999999999999999999888853 59999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhCCCCC
Q psy4547 79 QAIEVALRDYPVSR 92 (92)
Q Consensus 79 ~~iE~~l~~~~~V~ 92 (92)
.+||++|.+||.|+
T Consensus 413 ~eiE~~l~~~p~V~ 426 (509)
T 3ivr_A 413 AEVEGALKQHPAIA 426 (509)
T ss_dssp --------------
T ss_pred HHHHHHHHhCCCce
Confidence 99999999999884
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.91 E-value=4e-25 Score=149.52 Aligned_cols=80 Identities=33% Similarity=0.430 Sum_probs=71.9
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++||.+++|||++++.+...+.+ +||+|||++++ ++|.|+|+||+||+||++|++|+|.|
T Consensus 408 ~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~-----------g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~e 475 (576)
T 3gqw_A 408 ERVVGHICISGPSLMSGYFGDQVSQDEIAAT-----------GWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQD 475 (576)
T ss_dssp TTBCEEEEEESTTSCCCBTTCHHHHHHHHHH-----------SCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHH
T ss_pred CCCeEEEEEeCccccccccCCccccccccCC-----------CeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHH
Confidence 3678999999999999999998765543322 69999999999 79999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 476 IE~~l~~~p~V~ 487 (576)
T 3gqw_A 476 IEYIAEQEPEIH 487 (576)
T ss_dssp HHHHHTTSSSCC
T ss_pred HHHHHHhCcccc
Confidence 999999999984
No 28
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.91 E-value=1.5e-25 Score=150.98 Aligned_cols=81 Identities=30% Similarity=0.497 Sum_probs=71.8
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++||.++.|||++++.+...|.. +||+|||+++++++|.++|.||+||+||++|.+|+|.+
T Consensus 375 ~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~-----------~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~e 443 (529)
T 2v7b_A 375 DGEVGDLYIKGPSAAVMYWNNREKSRATFLG-----------EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVE 443 (529)
T ss_dssp TTSCEEEEEECTTCCCCBTTCHHHHHHHEET-----------TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHH
T ss_pred CCCccEEEEecCCcccccCCChHHHHHhhhc-----------CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHH
Confidence 4788999999999999999999988888753 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 444 IE~~l~~~p~V~ 455 (529)
T 2v7b_A 444 VEMVLVQHDAVL 455 (529)
T ss_dssp HHHHHTTSTTEE
T ss_pred HHHHHHhCCCcc
Confidence 999999999873
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.90 E-value=1.2e-25 Score=152.66 Aligned_cols=88 Identities=24% Similarity=0.370 Sum_probs=75.2
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+|+||.++.|||++++.+.+.|....... ..+.+||+|||+++++ +|.|+|+||+||+||++|++|+|.|
T Consensus 396 ~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~--~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~e 472 (590)
T 3kxw_A 396 FDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDD--ERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQD 472 (590)
T ss_dssp TTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC-----CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHH
T ss_pred CCCEEEEEEeCCcccccccCChhHHHHHHhccccCC--CCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHH
Confidence 478899999999999999999999988886543211 1123499999999999 9999999999999999999999999
Q ss_pred HHHHH-hhCCCC
Q psy4547 81 IEVAL-RDYPVS 91 (92)
Q Consensus 81 iE~~l-~~~~~V 91 (92)
||++| ..||.|
T Consensus 473 IE~~l~~~~~~v 484 (590)
T 3kxw_A 473 IEFSLMHSPLHH 484 (590)
T ss_dssp HHHHHHHSGGGG
T ss_pred HHHHHHhcCccc
Confidence 99999 677766
No 30
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.90 E-value=6e-25 Score=151.79 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=74.3
Q ss_pred CCceeEEEec--CcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechH
Q psy4547 2 GTPGDIYIGG--PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQ 79 (92)
Q Consensus 2 g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~ 79 (92)
|+.|||++++ |+++.|||++++.+.+.|..... +||+|||++++++||+++|+||+||+||++|++|+|.
T Consensus 468 g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~--------g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~ 539 (663)
T 1ry2_A 468 HAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP--------GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTA 539 (663)
T ss_dssp SCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST--------TSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHH
T ss_pred CcceEEEEecCCCchhcccccChHHHHHhhhcCCC--------CEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHH
Confidence 7889999999 58999999999877666643211 6999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q psy4547 80 AIEVALRDYPVSR 92 (92)
Q Consensus 80 ~iE~~l~~~~~V~ 92 (92)
|||++|.+||.|+
T Consensus 540 eIE~~l~~~p~V~ 552 (663)
T 1ry2_A 540 EIEAAIIEDPIVA 552 (663)
T ss_dssp HHHHHHHSSTTEE
T ss_pred HHHHHHHhCCCcc
Confidence 9999999999873
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.74 E-value=1.9e-18 Score=112.26 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=64.3
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
++.|++++..|++..+|.++.+........ ..+||+|||++++|++| +.|+||+||+||++|++|+|.||
T Consensus 196 ~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~---------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eI 265 (358)
T 4gs5_A 196 PEASELYVFLPGIQYGVDERGCLHISGAVT---------NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQI 265 (358)
T ss_dssp TTCCSCEEECTTCEEEECTTSEEEEESGGG---------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHH
T ss_pred cccceeeccCCCeEEEecCcCceEEecccc---------cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHH
Confidence 356888999999999998776644322211 12699999999999988 67789999999999999999999
Q ss_pred HHHHh---hCCCCC
Q psy4547 82 EVALR---DYPVSR 92 (92)
Q Consensus 82 E~~l~---~~~~V~ 92 (92)
|++|. +||.|+
T Consensus 266 E~~l~~~~~~p~V~ 279 (358)
T 4gs5_A 266 DQRIAAVFHHLNIG 279 (358)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHhccCCCcc
Confidence 98774 577763
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.72 E-value=3.1e-18 Score=113.14 Aligned_cols=69 Identities=25% Similarity=0.282 Sum_probs=58.0
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCC------c---EEEecccCCeEEE
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDG------T---FEVIGRSDTMVKI 71 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g------~---l~~~gR~~~~i~~ 71 (92)
+|+.|||+++++ +...+. . +||+|||+++++++| . ++|.||.||+||+
T Consensus 280 ~g~~Gel~v~~~------------~~~~~~-~----------~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~ 336 (436)
T 3qov_A 280 EGEIGELVLTTL------------DREMMP-L----------IRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII 336 (436)
T ss_dssp TTCCEEEEEEES------------SCCSSC-C----------CSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE
T ss_pred CCCceEEEEecc------------CcCCce-E----------EEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE
Confidence 477899999873 112221 1 599999999999998 5 6999999999999
Q ss_pred ccEEechHHHHHHHhhCCCCC
Q psy4547 72 RGYTIELQAIEVALRDYPVSR 92 (92)
Q Consensus 72 ~G~~v~~~~iE~~l~~~~~V~ 92 (92)
+|.+|+|.+||++|.+||.|+
T Consensus 337 ~G~~v~p~eiE~~l~~~p~v~ 357 (436)
T 3qov_A 337 KGVNIFPMQVEKILVQFPELG 357 (436)
T ss_dssp TTEEECHHHHHHHHTTCTTEE
T ss_pred CCEEECHHHHHHHHHhCcCcC
Confidence 999999999999999999873
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.71 E-value=7.4e-18 Score=111.49 Aligned_cols=49 Identities=29% Similarity=0.358 Sum_probs=47.1
Q ss_pred eEEEcCCeEEEecC-CcE-----EEecccCCeEEEccEEechHHHHHHHhhCCCC
Q psy4547 43 RLYNTGDWGYALGD-GTF-----EVIGRSDTMVKIRGYTIELQAIEVALRDYPVS 91 (92)
Q Consensus 43 ~~~~tGD~~~~~~~-g~l-----~~~gR~~~~i~~~G~~v~~~~iE~~l~~~~~V 91 (92)
+||+|||+++++++ |++ +|.||.||+||++|.+|+|.+||++|.+||.|
T Consensus 306 ~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V 360 (443)
T 2y4o_A 306 IRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLL 360 (443)
T ss_dssp SSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTE
T ss_pred heeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCc
Confidence 59999999999999 986 89999999999999999999999999999987
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.70 E-value=8.7e-18 Score=111.00 Aligned_cols=50 Identities=28% Similarity=0.296 Sum_probs=47.2
Q ss_pred eEEEcCCeEEEec-CCcE-----EEecccCCeEEEccEEechHHHHHHHhhCCCCC
Q psy4547 43 RLYNTGDWGYALG-DGTF-----EVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92 (92)
Q Consensus 43 ~~~~tGD~~~~~~-~g~l-----~~~gR~~~~i~~~G~~v~~~~iE~~l~~~~~V~ 92 (92)
+||+|||++++++ +|++ +|.||.||+||++|.+|+|.+||++|.+||.|+
T Consensus 304 ~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~ 359 (437)
T 2y27_A 304 IRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALA 359 (437)
T ss_dssp CSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBC
T ss_pred heeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcC
Confidence 5999999999999 6985 899999999999999999999999999999984
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.62 E-value=9.7e-17 Score=106.62 Aligned_cols=63 Identities=33% Similarity=0.507 Sum_probs=50.0
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCccccc-ccceeEEEcCCeEEEecCCcEEEecc
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRK-TCGVRLYNTGDWGYALGDGTFEVIGR 64 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~-~~~~~~~~tGD~~~~~~~g~l~~~gR 64 (92)
+|++|||+|+||.++.|||++++.+.+.|......... ....+||+|||+++++ ||+|+|+||
T Consensus 417 ~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 417 DGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 47889999999999999999999999888533221111 1234799999999997 999999998
No 36
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.24 E-value=1.2e-06 Score=60.46 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=40.0
Q ss_pred EEcCCeEEEec----CCcEEEecccCCeEEEccEEechHHHHHHHhhC
Q psy4547 45 YNTGDWGYALG----DGTFEVIGRSDTMVKIRGYTIELQAIEVALRDY 88 (92)
Q Consensus 45 ~~tGD~~~~~~----~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~~ 88 (92)
|++||+++++. ...+.|.||.++++++.|.+++..+||++|.+.
T Consensus 400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 89999999986 457999999999999999999999999999853
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.21 E-value=1e-06 Score=61.02 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=39.3
Q ss_pred EEcCCeEEEec----CCcEEEecccCCeEEEccEEechHHHHHHHhh
Q psy4547 45 YNTGDWGYALG----DGTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87 (92)
Q Consensus 45 ~~tGD~~~~~~----~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~ 87 (92)
|++||+++++. ...+.|.||.++++++.|.++++.+||++|.+
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 89999999974 46799999999999999999999999999873
No 38
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.02 E-value=3.8e-06 Score=57.92 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=38.9
Q ss_pred EEcCCeEEEecC----CcEEEecccCCeEEEccEEechHHHHHHHhh
Q psy4547 45 YNTGDWGYALGD----GTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87 (92)
Q Consensus 45 ~~tGD~~~~~~~----g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~ 87 (92)
|++||++++..- ..+.|.||.++++++.|.+++..+||++|.+
T Consensus 407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence 899999999753 4699999999999999999999999999874
No 39
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=95.17 E-value=0.014 Score=37.44 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=13.2
Q ss_pred EEEcCCeEEEecC--C-------cEEEecccCCeEEEccE
Q psy4547 44 LYNTGDWGYALGD--G-------TFEVIGRSDTMVKIRGY 74 (92)
Q Consensus 44 ~~~tGD~~~~~~~--g-------~l~~~gR~~~~i~~~G~ 74 (92)
.|+|||++...+. | .+..++|.++.+++.|.
T Consensus 329 ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 329 RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 6888888877553 2 24566777777777764
No 40
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=62.47 E-value=13 Score=19.90 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=19.6
Q ss_pred eeEEEcCCeE-EEecCCc-EEEecccCC
Q psy4547 42 VRLYNTGDWG-YALGDGT-FEVIGRSDT 67 (92)
Q Consensus 42 ~~~~~tGD~~-~~~~~g~-l~~~gR~~~ 67 (92)
.+|+.|+|-. -++.||. +.|..|.++
T Consensus 56 ~~W~ptPDGi~L~~~dGs~l~ff~r~~~ 83 (101)
T 1smp_I 56 VGWRPTPDGLTLTQADGSAVAFFSRNRD 83 (101)
T ss_dssp CEEEECSSEEEEECTTSCEEEEEEEETT
T ss_pred cccccCCCEEEEEcCCCCEEEEecccCC
Confidence 3799999944 4466764 888889877
No 41
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=55.85 E-value=13 Score=16.65 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=13.7
Q ss_pred EEechHHHHHHHhhCCC
Q psy4547 74 YTIELQAIEVALRDYPV 90 (92)
Q Consensus 74 ~~v~~~~iE~~l~~~~~ 90 (92)
.+++|.|||+.-+..|.
T Consensus 18 vrlypdeiealksrvpa 34 (53)
T 2kke_A 18 VRLYPDEIEALKSRVPA 34 (53)
T ss_dssp EEECHHHHHHHHTTCCS
T ss_pred EEeChhHHHHHHhcCCC
Confidence 57899999998777664
No 42
>1jiw_I Proteinase inhibitor; pseudomonas aeruginosa alkaline protease inhibitor, hydrolase/hyrolase inhibitor complex; 1.74A {Pseudomonas aeruginosa} SCOP: b.61.2.1 PDB: 2rn4_A
Probab=53.49 E-value=16 Score=19.68 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=19.1
Q ss_pred eeEEEcCCeEE-EecCC-cEEEecccCC
Q psy4547 42 VRLYNTGDWGY-ALGDG-TFEVIGRSDT 67 (92)
Q Consensus 42 ~~~~~tGD~~~-~~~~g-~l~~~gR~~~ 67 (92)
.+|+.|+|-.. ++.+| .+.|..|.++
T Consensus 59 ~~W~ptPdGi~L~~~dGs~l~ff~r~~~ 86 (106)
T 1jiw_I 59 RAWRPTPAGIALLERGGLTLMLLGRQGE 86 (106)
T ss_dssp CEEEEETTEEEEECTTSCEEEEEEEEET
T ss_pred cccccCCCeEEEEcCCCCEEEeeeecCC
Confidence 47999999544 46666 4788888776
No 43
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=42.65 E-value=14 Score=14.49 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=10.4
Q ss_pred EechHHHHHHHhhCC
Q psy4547 75 TIELQAIEVALRDYP 89 (92)
Q Consensus 75 ~v~~~~iE~~l~~~~ 89 (92)
.++|..||+-+.+-|
T Consensus 12 mlspddi~qw~s~dp 26 (28)
T 2b3g_B 12 MLSPDDIEQWFTEDP 26 (28)
T ss_dssp GCCHHHHHHHHHC--
T ss_pred hcChHHHHHHhhcCC
Confidence 468889998887765
No 44
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=40.87 E-value=30 Score=17.16 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=17.9
Q ss_pred CCeEEEccEEe---chHHHHHHHhhCC
Q psy4547 66 DTMVKIRGYTI---ELQAIEVALRDYP 89 (92)
Q Consensus 66 ~~~i~~~G~~v---~~~~iE~~l~~~~ 89 (92)
|..+.++|..+ +..++.+.|...+
T Consensus 48 D~I~~Ing~~v~~~~~~~~~~~l~~~~ 74 (88)
T 1kwa_A 48 DEIREINGISVANQTVEQLQKMLREMR 74 (88)
T ss_dssp CEEEEETTEEGGGSCHHHHHHHHHHCC
T ss_pred CEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 45567799998 4788888887654
No 45
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=37.82 E-value=45 Score=17.75 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.3
Q ss_pred EEEccEEechHHHHHHHhhCCCC
Q psy4547 69 VKIRGYTIELQAIEVALRDYPVS 91 (92)
Q Consensus 69 i~~~G~~v~~~~iE~~l~~~~~V 91 (92)
|.+.|..+.-.+|+++|..+.++
T Consensus 53 ItIEG~dIdfd~I~~~IE~~Ggv 75 (100)
T 3bpd_A 53 ITILGNNLDYEQIKGVIEDMGGV 75 (100)
T ss_dssp EEEEEEEECHHHHHHHHHTTTCE
T ss_pred EEEEecCCCHHHHHHHHHHcCCe
Confidence 44599999999999999987653
No 46
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=35.21 E-value=45 Score=16.66 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=17.8
Q ss_pred CCeEEEccEEech---HHHHHHHhhCC
Q psy4547 66 DTMVKIRGYTIEL---QAIEVALRDYP 89 (92)
Q Consensus 66 ~~~i~~~G~~v~~---~~iE~~l~~~~ 89 (92)
|.++.++|..+.. .++.+.|...+
T Consensus 59 D~I~~ing~~v~~~~~~~~~~~l~~~~ 85 (96)
T 2ego_A 59 DTIASVNGLNVEGIRHREIVDIIKASG 85 (96)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHHTT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 4556779999877 78888777653
No 47
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=34.59 E-value=43 Score=16.30 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=17.5
Q ss_pred CCeEEEccEEech---HHHHHHHhhCC
Q psy4547 66 DTMVKIRGYTIEL---QAIEVALRDYP 89 (92)
Q Consensus 66 ~~~i~~~G~~v~~---~~iE~~l~~~~ 89 (92)
|-++.++|..+.. .++.+.|...+
T Consensus 48 D~I~~ing~~v~~~~~~~~~~~l~~~~ 74 (87)
T 2pa1_A 48 DIIVAINGESAEGMLHAEAQSKIRQSP 74 (87)
T ss_dssp CEEEEETTEESTTCCHHHHHHHHHTCC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 4456779999876 78888777653
No 48
>1wqc_A OMTX1; toxin; NMR {Opisthacanthus madagascariensis} PDB: 1wqd_A
Probab=34.55 E-value=18 Score=14.07 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=8.9
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
+|..|..|+.|+
T Consensus 4 ~evClqh~gNVk 15 (26)
T 1wqc_A 4 YEVCLQQHGNVK 15 (26)
T ss_dssp HHHHHHHCCCSH
T ss_pred HHHHHHhCCCHH
Confidence 577788888774
No 49
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=33.53 E-value=54 Score=17.09 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=19.3
Q ss_pred CCeEEEccEEe---chHHHHHHHhhCCC
Q psy4547 66 DTMVKIRGYTI---ELQAIEVALRDYPV 90 (92)
Q Consensus 66 ~~~i~~~G~~v---~~~~iE~~l~~~~~ 90 (92)
|..+.+||..+ ...++-+.|.+.|.
T Consensus 51 D~I~~VNG~~v~g~~h~evv~lLk~~~~ 78 (95)
T 3gge_A 51 DHIESINGENIVGWRHYDVAKKLKELKK 78 (95)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHHSCT
T ss_pred CEEEEECCEEccCCCHHHHHHHHHhCCC
Confidence 45667899987 67888888888763
No 50
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=31.85 E-value=51 Score=16.27 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.0
Q ss_pred CCeEEEccEEe---chHHHHHHHhhCC
Q psy4547 66 DTMVKIRGYTI---ELQAIEVALRDYP 89 (92)
Q Consensus 66 ~~~i~~~G~~v---~~~~iE~~l~~~~ 89 (92)
|.++.++|..+ +..++.+.|...+
T Consensus 44 D~Il~ing~~v~~~~~~~~~~~i~~~~ 70 (88)
T 3e17_A 44 DIILKINGTVTENMSLTDARKLIEKSR 70 (88)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHHTT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 55667899988 6677777776544
No 51
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=31.73 E-value=45 Score=16.98 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=17.8
Q ss_pred CCeEEEccEEe---chHHHHHHHhhCC
Q psy4547 66 DTMVKIRGYTI---ELQAIEVALRDYP 89 (92)
Q Consensus 66 ~~~i~~~G~~v---~~~~iE~~l~~~~ 89 (92)
|.++.++|..| ...++.+.|...+
T Consensus 70 D~I~~vng~~v~~~~~~~~~~~l~~~~ 96 (104)
T 2z17_A 70 DVLANINGVSTEGFTYKQVVDLIRSSG 96 (104)
T ss_dssp CBCCEETTEECTTCCHHHHHHHHHHTT
T ss_pred CEEEEECCEEcCCCCHHHHHHHHHhCC
Confidence 55667899998 4677777777654
No 52
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=31.43 E-value=49 Score=16.30 Aligned_cols=23 Identities=9% Similarity=0.369 Sum_probs=16.2
Q ss_pred CCeEEEccEEe---chHHHHHHHhhC
Q psy4547 66 DTMVKIRGYTI---ELQAIEVALRDY 88 (92)
Q Consensus 66 ~~~i~~~G~~v---~~~~iE~~l~~~ 88 (92)
|.++.++|..+ +..++.+.|...
T Consensus 49 D~I~~ing~~v~~~~~~~~~~~l~~~ 74 (91)
T 2vsp_A 49 DVIIEVNGVNVLDEPYEKVVDRIQSS 74 (91)
T ss_dssp CEEEEETTEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcC
Confidence 44556799988 577887777653
No 53
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=31.14 E-value=54 Score=16.35 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=17.4
Q ss_pred CCeEEEccEEech---HHHHHHHhhCC
Q psy4547 66 DTMVKIRGYTIEL---QAIEVALRDYP 89 (92)
Q Consensus 66 ~~~i~~~G~~v~~---~~iE~~l~~~~ 89 (92)
|-++.++|..+.. .++.+.|...+
T Consensus 55 D~I~~ing~~v~~~~~~~~~~~l~~~~ 81 (98)
T 2jxo_A 55 DRIVEVNGVCMEGKQHGDVVSAIRAGG 81 (98)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 4556779999875 77877777654
No 54
>3uji_P Envelope glycoprotein GP160; IG domains, antibody FAB, antigen binding, the third variabl of HIV-1 GP120, immune system; HET: NAG FUC; 1.60A {Hiv-1 M} PDB: 3mlw_P 1f58_P 3mlx_P* 1ai1_P 1acy_P 2b1a_P 3mlt_P
Probab=29.73 E-value=29 Score=12.71 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=5.2
Q ss_pred eEEEcCCe
Q psy4547 43 RLYNTGDW 50 (92)
Q Consensus 43 ~~~~tGD~ 50 (92)
.||.|+++
T Consensus 14 ~fy~t~~I 21 (23)
T 3uji_P 14 AFYTTKNI 21 (26)
T ss_pred eEEecccc
Confidence 46777764
No 55
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=29.00 E-value=31 Score=20.20 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=25.6
Q ss_pred EcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHHHhh
Q psy4547 46 NTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87 (92)
Q Consensus 46 ~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~ 87 (92)
.+.-...+|.+|.+.+.|+.++........+...++++.|.+
T Consensus 143 ~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ 184 (218)
T 3u5r_E 143 CTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDA 184 (218)
T ss_dssp EESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHH
T ss_pred CCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHH
Confidence 344556678888888877766542212234556777777654
No 56
>3mly_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.70A {Human immunodeficiency virus 1} PDB: 2b1h_P 3mlu_P 3ujj_P
Probab=28.99 E-value=30 Score=12.66 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=5.2
Q ss_pred eEEEcCCe
Q psy4547 43 RLYNTGDW 50 (92)
Q Consensus 43 ~~~~tGD~ 50 (92)
.||.|+++
T Consensus 14 ~fy~t~~i 21 (23)
T 3mly_P 14 AFYATNGI 21 (26)
T ss_pred eEEecccc
Confidence 47777764
No 57
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif, CO-FACT PAPS/PAP, heparan sulfate oligosaccharides, golgi-localized transferase; HET: A3P NGY BDP SGN IDS; 1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Probab=28.93 E-value=20 Score=22.25 Aligned_cols=28 Identities=14% Similarity=-0.079 Sum_probs=23.3
Q ss_pred ccCCeEEEccEEechHHHHHHHhhCCCC
Q psy4547 64 RSDTMVKIRGYTIELQAIEVALRDYPVS 91 (92)
Q Consensus 64 R~~~~i~~~G~~v~~~~iE~~l~~~~~V 91 (92)
+.-+.+.++-.+-.+..+.+.|.+||.|
T Consensus 15 ~~P~f~iiG~~K~GTt~L~~~L~~HP~v 42 (269)
T 3uan_A 15 QLPQTIIIGVRKGGTRALLEMLSLHPDV 42 (269)
T ss_dssp CCCSEEECCCTTSSHHHHHHHHTTSTTE
T ss_pred cCCCEEEECCCCchHHHHHHHHHHCcCc
Confidence 4566777777788999999999999987
No 58
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=28.49 E-value=54 Score=20.45 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=28.7
Q ss_pred EEEc-CCeEEEecCCcEEEecccCCeEEEccEEechHHHHHHHhhCCCC
Q psy4547 44 LYNT-GDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYPVS 91 (92)
Q Consensus 44 ~~~t-GD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~~~~V 91 (92)
++|+ +|-...+++|++.+--+-.. --.|.+++..|.+.|+|
T Consensus 184 ~lR~~~~gp~vTDnGN~IlD~~f~~-------i~dp~~l~~~l~~i~GV 225 (255)
T 3hhe_A 184 TLRMNGDDPFKTDGGHFIFDAFWGR-------ILQPKLLSEALLAIPGV 225 (255)
T ss_dssp EECEETTEECCCTTSCEEEEECCSC-------CSCHHHHHHHHHTSTTE
T ss_pred EEeeCCCCcEEcCCCCEEEEeeCCC-------cCCHHHHHHHHhcCCCE
Confidence 5564 56566777887766444322 24789999999999987
No 59
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=28.41 E-value=1.1e+02 Score=21.25 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=36.5
Q ss_pred EEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHHHh
Q psy4547 44 LYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALR 86 (92)
Q Consensus 44 ~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~ 86 (92)
-...|+..++ +.|.++.+-...|.|.++|..++...|+..|.
T Consensus 369 ~l~pGEtlfI-PsGW~HaV~tleDSIaiggNFl~~~nl~~qlr 410 (528)
T 3pur_A 369 VIKEGQTLLI-PAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMR 410 (528)
T ss_dssp EEETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCGGGHHHHHH
T ss_pred EECCCCEEEe-cCCceEEEecCCCeEEEcCcccchhhHHHHHH
Confidence 4678999988 78999988888999999999999988888775
No 60
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=27.44 E-value=64 Score=16.21 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=17.4
Q ss_pred CCeEEEccEEech---HHHHHHHhhCC
Q psy4547 66 DTMVKIRGYTIEL---QAIEVALRDYP 89 (92)
Q Consensus 66 ~~~i~~~G~~v~~---~~iE~~l~~~~ 89 (92)
|-+++++|..|.. .++-+.|..++
T Consensus 52 D~I~~vng~~v~~~~~~~~~~~l~~~~ 78 (96)
T 1ujv_A 52 DLIVEINQQNVQNLSHTEVVDILKDCP 78 (96)
T ss_dssp CEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 5566789999864 67777777654
No 61
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=27.32 E-value=65 Score=16.07 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=17.1
Q ss_pred CCeEEEccEEe---chHHHHHHHhhC
Q psy4547 66 DTMVKIRGYTI---ELQAIEVALRDY 88 (92)
Q Consensus 66 ~~~i~~~G~~v---~~~~iE~~l~~~ 88 (92)
|.++.++|..| +..++.+.|.+.
T Consensus 53 D~Il~Ing~~v~~~~~~~~~~~l~~~ 78 (90)
T 1y7n_A 53 HRIIEINGQSVVATPHEKIVHILSNA 78 (90)
T ss_dssp CEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcC
Confidence 55667799999 577888877643
No 62
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=27.08 E-value=30 Score=17.27 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=16.8
Q ss_pred CeEEEccEEechHHHHHHHhh
Q psy4547 67 TMVKIRGYTIELQAIEVALRD 87 (92)
Q Consensus 67 ~~i~~~G~~v~~~~iE~~l~~ 87 (92)
+.|.++|..-+|.++.+.|.+
T Consensus 21 gtVsvsg~~~sp~D~~~~lsk 41 (72)
T 4evu_A 21 DSVKFTGNYGNMTEISYQVAK 41 (72)
T ss_dssp EEEEEEECCSSHHHHHHHHHH
T ss_pred cEEEECCccCChHHHHHHHHH
Confidence 467788888899999888864
No 63
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Probab=26.61 E-value=24 Score=22.31 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=23.4
Q ss_pred ccCCeEEEccEEechHHHHHHHhhCCCC
Q psy4547 64 RSDTMVKIRGYTIELQAIEVALRDYPVS 91 (92)
Q Consensus 64 R~~~~i~~~G~~v~~~~iE~~l~~~~~V 91 (92)
+.-+.+.++-.+-.+..+.+.|.+||.|
T Consensus 7 ~~P~f~iiGa~K~GTT~L~~~L~~HP~v 34 (311)
T 3rnl_A 7 ARPNFFIVGAAKCGTSSLDRYLSQHPDI 34 (311)
T ss_dssp CCCSEEECCCTTSSHHHHHHHHHTSTTE
T ss_pred CCCCEEEECCCcchHHHHHHHHHhCcCc
Confidence 4556777777788999999999999987
No 64
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=26.57 E-value=84 Score=17.08 Aligned_cols=41 Identities=10% Similarity=-0.072 Sum_probs=28.7
Q ss_pred EEcCCeEEEecCCcEEEecccC-CeEEEccEEechHHHHHHHhhCC
Q psy4547 45 YNTGDWGYALGDGTFEVIGRSD-TMVKIRGYTIELQAIEVALRDYP 89 (92)
Q Consensus 45 ~~tGD~~~~~~~g~l~~~gR~~-~~i~~~G~~v~~~~iE~~l~~~~ 89 (92)
+...|+. +|..|..|.+-... ..++ +. +++.+|-+.+++|.
T Consensus 45 ~~~~d~L-IDs~G~~y~L~~~~~~l~~--~~-lsl~ev~~LIq~H~ 86 (114)
T 2l6o_A 45 LQYGDKL-VDSNFHCFVLEEDAHWHPA--AP-LPPEGLNDLIRAHC 86 (114)
T ss_dssp CCTTCCE-EETTCEEEEECTTSSEEEE--EE-CCHHHHHHHHHHHH
T ss_pred cCCCCEE-EeCCCCEEEecCCCccccc--Cc-ccHHHHHHHHHHHH
Confidence 5566665 68888877765544 3333 56 99999999988763
No 65
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.62 E-value=70 Score=15.84 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=17.0
Q ss_pred CCeEEEccEEe--chHHHHHHHhhC
Q psy4547 66 DTMVKIRGYTI--ELQAIEVALRDY 88 (92)
Q Consensus 66 ~~~i~~~G~~v--~~~~iE~~l~~~ 88 (92)
|.++.++|..+ +..++.+.|...
T Consensus 52 D~I~~ing~~v~~~~~~~~~~l~~~ 76 (91)
T 2e7k_A 52 DIIKEVNGQPVGSDPRALQELLRNA 76 (91)
T ss_dssp CEEEEETTEECTTCHHHHHHHHHTC
T ss_pred CEEEEECCEECCCCHHHHHHHHHcC
Confidence 55667799998 677777777653
No 66
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=25.34 E-value=78 Score=16.67 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=17.9
Q ss_pred CCeEEEccEEec---hHHHHHHHhhCC
Q psy4547 66 DTMVKIRGYTIE---LQAIEVALRDYP 89 (92)
Q Consensus 66 ~~~i~~~G~~v~---~~~iE~~l~~~~ 89 (92)
|.++.++|..|. ..++.+.|..++
T Consensus 67 D~Il~Vng~~v~~~~~~~~~~~l~~~~ 93 (123)
T 1ueq_A 67 DVIVYINEVCVLGHTHADVVKLFQSVP 93 (123)
T ss_dssp CEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 556778999995 677888777653
No 67
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=25.31 E-value=70 Score=15.75 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=16.8
Q ss_pred CCeEEEccEEe---chHHHHHHHhhCC
Q psy4547 66 DTMVKIRGYTI---ELQAIEVALRDYP 89 (92)
Q Consensus 66 ~~~i~~~G~~v---~~~~iE~~l~~~~ 89 (92)
|.++.++|..+ +..++.+.|...+
T Consensus 51 D~I~~ing~~v~~~~~~~~~~~l~~~~ 77 (93)
T 3o46_A 51 DELREVNGIPVEDKRPEEIIQILAQSQ 77 (93)
T ss_dssp CEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 55667799988 5667777776543
No 68
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=25.04 E-value=61 Score=18.21 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=24.0
Q ss_pred EEEecCCcEEEeccc------CCeEEEccEEechHHHHHHHhh
Q psy4547 51 GYALGDGTFEVIGRS------DTMVKIRGYTIELQAIEVALRD 87 (92)
Q Consensus 51 ~~~~~~g~l~~~gR~------~~~i~~~G~~v~~~~iE~~l~~ 87 (92)
..+|.+|.|.+..+. ..+...+...++..+|+..+..
T Consensus 87 f~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~~~ 129 (151)
T 3dqg_A 87 FDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKE 129 (151)
T ss_dssp EEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHHHH
T ss_pred EEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHHHH
Confidence 346888888877542 2222223457889999988764
No 69
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=24.87 E-value=53 Score=16.63 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=17.4
Q ss_pred CCeEEEccEEe---chHHHHHHHhhC
Q psy4547 66 DTMVKIRGYTI---ELQAIEVALRDY 88 (92)
Q Consensus 66 ~~~i~~~G~~v---~~~~iE~~l~~~ 88 (92)
|.++.++|..+ +..++.+.|..+
T Consensus 60 D~I~~Ing~~v~~~~~~~~~~~l~~~ 85 (101)
T 2yt7_A 60 DRLTAINGTSLVGLPLAACQAAVRET 85 (101)
T ss_dssp CEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhC
Confidence 55667799998 678888888764
No 70
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=24.78 E-value=1.7e+02 Score=19.86 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=36.3
Q ss_pred eEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHHHh
Q psy4547 43 RLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALR 86 (92)
Q Consensus 43 ~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~ 86 (92)
.....||..++ +.|.++.+--.++.|.++|..++...|+.++.
T Consensus 303 v~l~pGetlfI-PsGWwH~V~nledsIai~~NF~~~~nl~~~l~ 345 (447)
T 3kv4_A 303 CSVKQGQTLFI-PTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLK 345 (447)
T ss_dssp EEEETTCEEEE-CTTCEEEEEESSCEEEEEEEECCSTTHHHHHH
T ss_pred EEECCCcEEec-CCCCeEEEecCCCEEEEccccccccCHHHHHH
Confidence 35789999987 78899888888999999999998888877765
No 71
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=24.72 E-value=73 Score=15.75 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=16.1
Q ss_pred CCeEEEccEEech---HHHHHHHhhC
Q psy4547 66 DTMVKIRGYTIEL---QAIEVALRDY 88 (92)
Q Consensus 66 ~~~i~~~G~~v~~---~~iE~~l~~~ 88 (92)
|-++.++|..+.. .++.+.|...
T Consensus 52 D~I~~ing~~v~~~~~~~~~~~l~~~ 77 (94)
T 1vb7_A 52 DIIVAINGQSAENMLHAEAQSKIRQS 77 (94)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhC
Confidence 4455678988876 6777777654
No 72
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=24.55 E-value=69 Score=15.39 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=16.3
Q ss_pred CCeEEEccEEec---hHHHHHHHhhC
Q psy4547 66 DTMVKIRGYTIE---LQAIEVALRDY 88 (92)
Q Consensus 66 ~~~i~~~G~~v~---~~~iE~~l~~~ 88 (92)
|.++.++|..+. ..++.+.|..+
T Consensus 48 D~I~~vng~~v~~~~~~~~~~~l~~~ 73 (85)
T 2i04_A 48 DVIVSVNDTCVLGHTHAQVVKIFQSI 73 (85)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhC
Confidence 445677999985 46777777765
No 73
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=23.47 E-value=38 Score=19.02 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.1
Q ss_pred EEEcCCeEEEecCCcEEEe
Q psy4547 44 LYNTGDWGYALGDGTFEVI 62 (92)
Q Consensus 44 ~~~tGD~~~~~~~g~l~~~ 62 (92)
-+..||++++-+.+.|.|.
T Consensus 72 ~~~~GDIaYw~pgg~LaIF 90 (136)
T 1zx8_A 72 VVEIGDVGYWPPGKALCLF 90 (136)
T ss_dssp SBCTTEEEEEGGGTEEEEE
T ss_pred cCCCCcEEEeCCCCEEEEE
Confidence 3578999999998887654
No 74
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=22.29 E-value=80 Score=15.34 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=15.3
Q ss_pred CCeEEEccEEe---chHHHHHHHhh
Q psy4547 66 DTMVKIRGYTI---ELQAIEVALRD 87 (92)
Q Consensus 66 ~~~i~~~G~~v---~~~~iE~~l~~ 87 (92)
|-++.++|..| +..++.+.|..
T Consensus 50 D~I~~ing~~v~~~~~~~~~~~l~~ 74 (90)
T 2eaq_A 50 DEIIAINNTKFSYNDSKEWEEAMAK 74 (90)
T ss_dssp CEEEEETTEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCEEccCCCHHHHHHHHHh
Confidence 44556799998 56677776653
No 75
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=22.11 E-value=1.3e+02 Score=20.54 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=36.6
Q ss_pred eEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHHHh
Q psy4547 43 RLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALR 86 (92)
Q Consensus 43 ~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~ 86 (92)
.....||..++ +.|.++.+--.++.|.++|..++...|+.++.
T Consensus 338 ~~l~pGe~lfI-PsGWwH~V~nledsIai~~NF~~~~nl~~~l~ 380 (488)
T 3kv5_D 338 CVVKQGHTLFV-PTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 380 (488)
T ss_dssp EEEETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCSTTHHHHHH
T ss_pred EeeCCCCEEEe-CCCceEEeeCCCCeEEEccccCCccCHHHHHH
Confidence 35789999987 78999888888999999999999888887765
No 76
>1hf2_A MINC, septum site-determining protein MINC; cell division protein, FTSZ, bacterial cell division, beta helix; 2.2A {Thermotoga maritima} SCOP: b.80.3.1 c.102.1.1
Probab=21.95 E-value=1.1e+02 Score=18.16 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=21.7
Q ss_pred cceeEEEcCCeEEE---------ecCCcEEEecccCCeEEE
Q psy4547 40 CGVRLYNTGDWGYA---------LGDGTFEVIGRSDTMVKI 71 (92)
Q Consensus 40 ~~~~~~~tGD~~~~---------~~~g~l~~~gR~~~~i~~ 71 (92)
.+...|..||+..+ -++|.+++.|+....+-.
T Consensus 110 SGQ~I~~~gdlvVlGdVn~GAeViA~GnI~V~G~LrG~a~A 150 (210)
T 1hf2_A 110 SGQTVVHSGDVIVFGNVNKGAEILAGGSVVVFGKAQGNIRA 150 (210)
T ss_dssp TTEEEEESSCEEESSCBCTTCEEEESSCEEEEEEECSEEEE
T ss_pred CCCEEEecCCEEEEccCCCCCEEEeCCcEEEEEeeceEEEe
Confidence 34456777887544 556899999887666543
No 77
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate biosynthesis, substrate specificity, glycoprotein, golgi apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Probab=21.52 E-value=38 Score=20.70 Aligned_cols=28 Identities=14% Similarity=-0.038 Sum_probs=22.9
Q ss_pred ccCCeEEEccEEechHHHHHHHhhCCCC
Q psy4547 64 RSDTMVKIRGYTIELQAIEVALRDYPVS 91 (92)
Q Consensus 64 R~~~~i~~~G~~v~~~~iE~~l~~~~~V 91 (92)
+..+++.++-.+-.+.-+++.|.+||.|
T Consensus 23 ~~p~~~iiG~pKsGTT~L~~~L~~Hp~i 50 (280)
T 3bd9_A 23 QLPKAIIIGVRKGGTRALLEMLNLHPAV 50 (280)
T ss_dssp CCCSEEEEECTTSSHHHHHHHHTTSTTE
T ss_pred CCCCEEEECCCCccHHHHHHHHHhCCCc
Confidence 5567777777788899999999999976
No 78
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=21.46 E-value=1.5e+02 Score=19.61 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=36.2
Q ss_pred eEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHHHh
Q psy4547 43 RLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALR 86 (92)
Q Consensus 43 ~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~ 86 (92)
.....||..++ +.|.++.+--.++.|.++|..++...|+.++.
T Consensus 219 v~l~pGEtLfI-PsGWwH~V~nledSIai~~NFl~~~nl~~~l~ 261 (371)
T 3k3o_A 219 CSVKQGQTLFI-PTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLK 261 (371)
T ss_dssp EEEETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCSTTHHHHHH
T ss_pred EEECCCcEEEe-CCCCeEEEecCCCeEEECCcccchhhHHHHHH
Confidence 45779999987 77888888788999999999999888887765
No 79
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=21.40 E-value=60 Score=16.63 Aligned_cols=23 Identities=17% Similarity=0.531 Sum_probs=17.5
Q ss_pred CCeEEEccEEec---hHHHHHHHhhC
Q psy4547 66 DTMVKIRGYTIE---LQAIEVALRDY 88 (92)
Q Consensus 66 ~~~i~~~G~~v~---~~~iE~~l~~~ 88 (92)
|.++.++|..|. ..++.+.|...
T Consensus 59 D~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 59 DEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp CEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcC
Confidence 556677999987 68888887754
No 80
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=20.67 E-value=1.1e+02 Score=16.16 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=16.8
Q ss_pred CCeEEEccEEe---chHHHHHHHhh
Q psy4547 66 DTMVKIRGYTI---ELQAIEVALRD 87 (92)
Q Consensus 66 ~~~i~~~G~~v---~~~~iE~~l~~ 87 (92)
|.++.++|..| +..++...+.+
T Consensus 61 D~I~~Ing~~v~~~s~~dv~~~i~~ 85 (101)
T 3qik_A 61 RKIYSINEDLVFLRPFSEVESILNQ 85 (101)
T ss_dssp CBEEEETTEESTTSCHHHHHHHHHH
T ss_pred CEEEEECCEEcCcCCHHHHHHHHHH
Confidence 55677899998 67778777765
No 81
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=20.06 E-value=1.6e+02 Score=19.62 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=35.8
Q ss_pred eEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHHHh
Q psy4547 43 RLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALR 86 (92)
Q Consensus 43 ~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~ 86 (92)
.....||..++ +.|.++.+--.++.|.++|..++..-|+.++.
T Consensus 247 v~l~pGe~lfI-PsGW~H~V~nledSIai~~NFl~~~nl~~~l~ 289 (397)
T 3kv9_A 247 CVVKQGHTLFV-PTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 289 (397)
T ss_dssp EEEETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCSTTHHHHHH
T ss_pred EEECCCCEEEe-CCCCeEEccCCcCeEEECCcccCchhHHHHHH
Confidence 35789999987 67888888788999999999999888887764
Done!