RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4547
(92 letters)
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 107 bits (270), Expect = 3e-29
Identities = 46/88 (52%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++YIGG +A GYLNRP+L RF+ P G RLY TGD L DG E
Sbjct: 289 GVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGP---GERLYRTGDLARWLPDGNLEF 345
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D VKIRGY IEL IE AL +P
Sbjct: 346 LGRADDQVKIRGYRIELGEIEAALLAHP 373
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 107 bits (270), Expect = 4e-29
Identities = 44/88 (50%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++Y+GG LA+GYLNRP+L RF+ P G RLY TGD DG E
Sbjct: 321 GVPGELYVGGDGLALGYLNRPELTAERFVPDP-FGP---GERLYRTGDLARWRPDGNIEF 376
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D VKIRG+ IEL IE AL +P
Sbjct: 377 LGRIDRQVKIRGFRIELGEIEQALLQHP 404
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 101 bits (254), Expect = 3e-27
Identities = 47/91 (51%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++YIGGP +A GYLNRP+L RF+ P G RLY TGD L DG E
Sbjct: 317 GVVGELYIGGPGVARGYLNRPELTAERFVPDP--FAGGDGARLYRTGDLVRYLPDGNLEF 374
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRGY IEL IE AL +P R
Sbjct: 375 LGRIDDQVKIRGYRIELGEIEAALLRHPGVR 405
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 98.8 bits (247), Expect = 5e-26
Identities = 44/88 (50%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++YIGG +A GYL RP+L RF+ P G RLY TGD DG E
Sbjct: 282 GVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDP---GGRLYRTGDLVRWRPDGRLEY 338
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D VKIRG+ IEL IE ALR +P
Sbjct: 339 LGRADDQVKIRGFRIELGEIEAALRAHP 366
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 97.3 bits (243), Expect = 1e-25
Identities = 44/91 (48%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ IGGP +A GYLNRP+L +FI P L G R+Y TGD L DG+ E
Sbjct: 283 GAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNP-GGRIYRTGDLVRYLEDGSLEF 341
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRG IEL IE LR P
Sbjct: 342 LGRKDDQVKIRGQRIELGEIEAVLRALPGVV 372
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 97.4 bits (243), Expect = 1e-25
Identities = 43/88 (48%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++YIGG +A GYL RP+L RF+ P G RLY TGD DG E
Sbjct: 292 GVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSP--GERLYRTGDLVRRRADGQLEY 349
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D VK+RG+ IEL IE ALR P
Sbjct: 350 LGRIDDQVKVRGFRIELGEIEAALRSIP 377
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 92.0 bits (229), Expect = 2e-23
Identities = 42/88 (47%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G GD+Y+ G LA GYL RPDL RFI+ P G R+Y TGD L DG E
Sbjct: 800 GVAGDLYLTGIQLAQGYLGRPDLTASRFIADP----FAPGERMYRTGDVARWLDDGAVEY 855
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GRSD +KIRG IEL I+ A++ P
Sbjct: 856 LGRSDDQLKIRGQRIELGEIDRAMQALP 883
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 91.6 bits (228), Expect = 2e-23
Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ I GP +A GYLN P+L RF+ G +Y TGD G DG E+
Sbjct: 326 GEVGELCIRGPGVARGYLNDPELTAERFVE--------DGWGMYRTGDLGRWDEDGYLEI 377
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D VKIRG IE IE L ++P
Sbjct: 378 LGRKDDQVKIRGERIEPGEIEAVLLEHP 405
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 91.9 bits (229), Expect = 2e-23
Identities = 42/88 (47%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
PG++YIGG +A+GY P+L RFI+ G RLY TGD G DGT E
Sbjct: 324 WVPGELYIGGVGVALGYWGDPELTAERFITHRT------GERLYRTGDLGRYRPDGTIEF 377
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D VKIRGY +EL IE AL +P
Sbjct: 378 LGRADHQVKIRGYRVELGEIEAALARHP 405
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 89.6 bits (223), Expect = 1e-22
Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ I GP ++ GYLN P+ F G R Y TGD Y DG
Sbjct: 296 GEEGELVIAGPQVSPGYLNNPEKTAKAFFQDE-------GQRWYRTGDLVYLEDDGLLVY 348
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D +K+ GY IEL+ IE ALR P
Sbjct: 349 LGRKDFQIKLHGYRIELEEIEAALRALP 376
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 88.1 bits (218), Expect = 4e-22
Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 10/89 (11%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G PG++YI G LA+GYLNRPDL RFI+ +RLY TGD L DG E
Sbjct: 564 LGVPGELYIAGLGLALGYLNRPDLTAERFIA----------LRLYRTGDLARPLADGALE 613
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D+ VKIRG+ IEL IE AL + P
Sbjct: 614 YLGRKDSQVKIRGFRIELGEIEAALAEQP 642
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 86.0 bits (213), Expect = 3e-21
Identities = 42/91 (46%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++YIGG LA GY RP L RF+ P G RLY TGD DG E
Sbjct: 852 GVVGELYIGGAGLARGYHRRPALTAERFVPDPF---GADGGRLYRTGDLARYRADGVIEY 908
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRG+ IEL IE L P R
Sbjct: 909 LGRMDHQVKIRGFRIELGEIEARLLAQPGVR 939
Score = 84.4 bits (209), Expect = 1e-20
Identities = 43/88 (48%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+GG LA GYLNRP L RF++ P T G RLY TGD DG E
Sbjct: 1916 GVAGELYLGGVGLARGYLNRPALTAERFVADPF---GTVGSRLYRTGDLARYRADGVIEY 1972
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D VKIRG+ IEL IE LR+
Sbjct: 1973 LGRIDHQVKIRGFRIELGEIEARLREQG 2000
Score = 83.7 bits (207), Expect = 2e-20
Identities = 42/91 (46%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++YIGG LA GY RP L RF++ P G RLY TGD DG E
Sbjct: 3433 GVAGELYIGGVGLARGYHQRPSLTAERFVADP---FSGSGGRLYRTGDLARYRADGVIEY 3489
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRG+ IEL IE L +P R
Sbjct: 3490 LGRIDHQVKIRGFRIELGEIEARLLQHPSVR 3520
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 83.1 bits (205), Expect = 3e-20
Identities = 43/91 (47%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+GG LA GYLNRP L RF+ P G RLY TGD DG E
Sbjct: 2343 GMAGELYLGGEGLARGYLNRPGLTAERFVPDP---FSASGERLYRTGDLARYRADGVVEY 2399
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRG+ IEL IE L+ +P R
Sbjct: 2400 LGRIDHQVKIRGFRIELGEIEARLQAHPAVR 2430
Score = 81.9 bits (202), Expect = 7e-20
Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTP--EHLRKTCGVRLYNTGDWGYALGDGT 58
+G G++Y+GG +A GYL RP L RF+ P G RLY TGD DG
Sbjct: 4890 VGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAP-----GGRLYRTGDLARYRADGV 4944
Query: 59 FEVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+ +GR D VKIRG+ IEL IE LR++P R
Sbjct: 4945 IDYLGRVDHQVKIRGFRIELGEIEARLREHPAVR 4978
Score = 79.6 bits (196), Expect = 4e-19
Identities = 43/91 (47%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+GG LA GY NRP L RF+ P G RLY TGD DG E
Sbjct: 3387 GALGELYLGGEGLARGYHNRPGLTAERFVPDPF----VPGERLYRTGDLARYRADGVIEY 3442
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
IGR D VKIRG+ IEL IE L ++P R
Sbjct: 3443 IGRVDHQVKIRGFRIELGEIEARLLEHPWVR 3473
Score = 75.0 bits (184), Expect = 2e-17
Identities = 38/91 (41%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+ G LA GY RP L RF+ +P G R+Y TGD DG E
Sbjct: 849 GVLGELYLAGRGLARGYHGRPGLTAERFVPSP----FVAGERMYRTGDLARYRADGVIEY 904
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
GR D VK+RG IEL IE L ++P R
Sbjct: 905 AGRIDHQVKLRGLRIELGEIEARLLEHPWVR 935
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 81.4 bits (201), Expect = 1e-19
Identities = 41/91 (45%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+GG LA GY +RP L RF++ P G RLY TGD DG E
Sbjct: 2530 GATGELYVGGAGLAQGYHDRPGLTAERFVADP---FAADGGRLYRTGDLVRLRADGLVEY 2586
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRG+ IEL IE L ++P R
Sbjct: 2587 VGRIDHQVKIRGFRIELGEIESRLLEHPAVR 2617
Score = 75.6 bits (186), Expect = 1e-17
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ IGG LA GYL RP L RF+ P G RLY TGD DG E
Sbjct: 1467 GVAGELCIGGAGLARGYLGRPALTAERFVPDPL---GEDGARLYRTGDRARWNADGALEY 1523
Query: 62 IGRSDTMVKIRGYTIELQAIEVAL 85
+GR D VK+RG+ +E + I+ L
Sbjct: 1524 LGRLDQQVKLRGFRVEPEEIQARL 1547
Score = 63.6 bits (155), Expect = 2e-13
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G G++ + G + GY+ P + F+ P G RLY TGD DG E
Sbjct: 4063 LGAVGELCVAGTGVGRGYVGDPLRTALAFVPHP---FGAPGERLYRTGDLARRRSDGVLE 4119
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRGY IEL IE L + R
Sbjct: 4120 YVGRIDHQVKIRGYRIELGEIEARLHEQAEVR 4151
Score = 38.6 bits (90), Expect = 1e-04
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I+ GP++A GY P+ + F+ EH G TGD G+ L DG V GR
Sbjct: 398 GEIWASGPSIAHGYWRNPEASAKTFV---EH----DGRTWLRTGDLGF-LRDGELFVTGR 449
Query: 65 SDTMVKIRGYTIELQAIEVAL-RDYPVSR 92
M+ +RG+ + Q IE + R+ V R
Sbjct: 450 LKDMLIVRGHNLYPQDIEKTVEREVEVVR 478
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 70.5 bits (173), Expect = 6e-16
Identities = 42/109 (38%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFIS----TPEHLRKT------------CGVR-- 43
G G+IY+ LA GYL P+LN +F++ P H G R
Sbjct: 619 GEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDR 678
Query: 44 LYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
LY TGD G L DG E GR+D VKIRG+ IEL I+ L +P+ R
Sbjct: 679 LYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVR 727
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 59.4 bits (144), Expect = 5e-12
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I++ GP + GY NRP+ F TGD GY DG +
Sbjct: 370 GEVGEIWVRGPNVMKGYWNRPEATAEAFD----------EDGWLRTGDLGYVDEDGYLYI 419
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR ++ G I + IE L ++P
Sbjct: 420 VGRLKDLIISGGENIYPEEIEAVLAEHP 447
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 59.2 bits (144), Expect = 5e-12
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ G + GY N P+ R P + LY TGD +G
Sbjct: 195 GEVGELVHRGANVMKGYWNDPEATAERLRPGPL----PGEIVLY-TGDLVRMDEEGYLYF 249
Query: 62 IGRSDTMVKIRGYTIELQAIEVAL 85
+GR D M+K RGY + IE +
Sbjct: 250 VGRKDDMIKTRGYRVSPTEIEEVI 273
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 58.1 bits (141), Expect = 2e-11
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ + GP + GY N P Y TGD GY +G +
Sbjct: 193 GEVGELVVRGPWVMKGYWNNPPETTAAATEDG----------WYRTGDLGYLDEEGYLYI 242
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GRS ++K+ G + +E L +P
Sbjct: 243 TGRSKDLIKVGGENVYPAEVESVLLQHP 270
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 56.6 bits (137), Expect = 6e-11
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
GT GD+++ GP+LA GY N P+ T LR TGD DG +
Sbjct: 284 GTVGDLWVRGPSLAPGYWNLPE-------KTQRTLRDG----WLRTGDRFSRDADGWYRY 332
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GR+D M+K+ G + +E AL ++P
Sbjct: 333 QGRADDMIKVSGQWVSPLEVEAALGEHP 360
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 55.9 bits (135), Expect = 9e-11
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I GP+++ GYLN P+ T E G Y TGD G + DG
Sbjct: 340 GEKGEIVIVGPSVSKGYLNNPEK-------TAEAFFSHEGQPAYRTGDAGT-ITDGQLFY 391
Query: 62 IGRSDTMVKIRGYTIELQAIEVALR 86
GR D +K+ GY IEL+ IE LR
Sbjct: 392 QGRLDFQIKLHGYRIELEDIEFNLR 416
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 54.2 bits (131), Expect = 5e-10
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G I IGGP + GYL P+ T E ++ G+ Y TGD G+ DG +
Sbjct: 985 GEDGLILIGGPQVMKGYLGDPEK-------TAEVIKDIDGIGWYVTGDKGHLDEDGFLTI 1037
Query: 62 IGRSDTMVKIRGYTIELQAIEVAL 85
R KI G + L A+E L
Sbjct: 1038 TDRYSRFAKIGGEMVPLGAVEEEL 1061
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 53.7 bits (130), Expect = 5e-10
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I GP+++ GYLN P+ F + G Y+TGD GY L DG
Sbjct: 342 GEQGEIVISGPSVSKGYLNNPEKTAEAFFTFD-------GQPAYHTGDAGY-LEDGLLFY 393
Query: 62 IGRSDTMVKIRGYTIELQAIEVALR 86
GR D +K+ GY IEL+ IE LR
Sbjct: 394 QGRIDFQIKLNGYRIELEEIEQNLR 418
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 50.4 bits (121), Expect = 8e-09
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++++ G + A GY NR + + F+ TGD Y DG +
Sbjct: 354 GEIGELWVRGDSSAAGYWNRREKTRETFVGE-----------WTRTGDKYYRDEDGYYWY 402
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GRSD M+K+ G + +E AL +P
Sbjct: 403 CGRSDDMLKVSGIWVSPFEVEDALLQHP 430
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 49.2 bits (118), Expect = 2e-08
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP + GY NRP+ +T E + G R + TGD GY +G F
Sbjct: 276 GEEGEIVVRGPQVFKGYWNRPE-------ATAESFIELDGKRFFRTGDLGYIDEEGYFFF 328
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R M+ + GY + +E L +P
Sbjct: 329 LDRVKRMINVSGYKVWPAEVEALLYQHP 356
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 48.3 bits (116), Expect = 5e-08
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I++ GP++A GY NRP+ F + T TGD G+ L DG V GR
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLA----TDEGGWLRTGDLGF-LHDGELYVTGR 437
Query: 65 SDTMVKIRGYTIELQAIEVALRD 87
++ IRG Q IE +
Sbjct: 438 LKDLIIIRGRNHYPQDIEATVER 460
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 47.8 bits (114), Expect = 7e-08
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I P+L GYL+ PD +T L R TGD GY GDG F
Sbjct: 375 GESGEIEIRAPSLMRGYLDNPD-------ATARALTDDGYFR---TGDLGYTRGDGQFVY 424
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
R +++ G+ + IE AL P
Sbjct: 425 QTRMGDSLRLGGFLVNPAEIEHALEALP 452
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 46.4 bits (111), Expect = 2e-07
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G+I + GP+L +GYL + L ++TGD GY +G V
Sbjct: 258 PQDGEILVRGPSLFLGYLPQGGLTPPLD-----------EDGWFHTGDLGYLDAEGYLYV 306
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D ++ G I + IE L +P
Sbjct: 307 LGRRDDLIISGGENIYPEEIEAVLLQHP 334
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 45.0 bits (107), Expect = 6e-07
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 5 GDIYI--GGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVI 62
G++ + P +A+ Y N P+ R+ R Y TGDW DG F +
Sbjct: 367 GELVVRLPWPGMALTYWNDPE----RYKEAYFG-------RWYRTGDWAERDEDGYFWLH 415
Query: 63 GRSDTMVKIRGYTIELQAIEVALRDYP 89
GRSD ++K+ G I IE L +P
Sbjct: 416 GRSDDVIKVSGKRIGPLEIESVLLAHP 442
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 44.0 bits (104), Expect = 2e-06
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLR--KTCGVRLYNTGDWGYALGDGTF 59
G G++ G +A+GY N P+ RF P + ++ +GD +G
Sbjct: 354 GEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW-SGDTVRRDEEGFL 412
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVAL 85
+GR D M+K GY + +E
Sbjct: 413 YFVGRRDEMIKTSGYRVSPTEVEEVA 438
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 43.9 bits (104), Expect = 2e-06
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G I +GGPTLA GY N D + + P R T D G AL DG V+GR
Sbjct: 208 GRIALGGPTLAKGYRNPVDPDPF---AEPGWFR---------TDDLG-ALDDGVLTVLGR 254
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
+D + G T+ Q +E AL +P
Sbjct: 255 ADDAISTGGLTVLPQVVEAALATHP 279
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 44.0 bits (104), Expect = 2e-06
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I + G L GYL + +L +NTGD G G+G V+GR
Sbjct: 293 GEIMVKGANLMKGYLYQGELTPAFEQQG-----------WFNTGDIGELDGEGFLYVLGR 341
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
D ++ G I + IE L +P
Sbjct: 342 RDDLIISGGENIYPEEIETVLYQHP 366
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 42.9 bits (101), Expect = 3e-06
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 2 GTPGDIYIG-GPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
GT GDI I PT ++ PE T Y TGD G DG F
Sbjct: 367 GTEGDIGIRVKPTRPFCLF-------SCYVDNPEKTAATIRGDFYITGDRGIMDEDGYFW 419
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D ++ GY I +E AL ++P
Sbjct: 420 FVGRADDVINSSGYRIGPFEVESALIEHP 448
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 43.0 bits (101), Expect = 4e-06
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ I GP + GY NRP+ + F+ G R + TGD GY DG F +
Sbjct: 391 GEVGELRIRGPNVTRGYWNRPEESAEAFV----------GDR-FLTGDIGYMDTDGYFFL 439
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R M+ G+ + Q IE A+ ++P
Sbjct: 440 VDRKKDMIISGGFNVYPQMIEQAIYEHP 467
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 41.1 bits (97), Expect = 1e-05
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G + + GP + GYLN + + Y+TGD G DG +
Sbjct: 336 GEGGLLLVRGPNVMSGYLNNEEKTS--EVEVLGD-------GWYDTGDIGKIDEDGFLTI 386
Query: 62 IGRSDTMVKIRGYTIELQAIEVAL 85
+GR KI G + L A+E L
Sbjct: 387 VGRLKRFAKIGGEMVSLTAVEELL 410
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 41.3 bits (97), Expect = 2e-05
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 45 YNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
YN+GD G+ +G + ++ RSD +KI G ++L IE ++ +P
Sbjct: 494 YNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHP 538
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 40.6 bits (95), Expect = 2e-05
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++ I GP+ A Y N + F E R +GD DG++
Sbjct: 354 GEPGELLISGPSSATMYWNNRAKTRDTFQG--EWTR---------SGDKYVRNDDGSYTY 402
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GR+D M+K+ G + IE AL +P
Sbjct: 403 AGRTDDMLKVSGIYVSPFEIESALIQHP 430
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 40.0 bits (94), Expect = 4e-05
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G G+I + P+L GY N+P+ E LR +TGD G G
Sbjct: 411 LGAEGEIVVRTPSLLKGYWNKPEATA-------EALRDG----WLHTGDIGKIDEQGFLH 459
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR M+K+ G ++ +E L +P
Sbjct: 460 YLGRRKEMLKVNGMSVFPSEVEALLGQHP 488
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 40.0 bits (94), Expect = 4e-05
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVI 62
T G++ + GPTL GYLNRPD F T + + TGD DG ++
Sbjct: 320 TVGELQVRGPTLFDGYLNRPDATAAAF--TADG--------WFRTGDVAVVDPDGMHRIV 369
Query: 63 GRSDT-MVKIRGYTIELQAIEVALRDYP 89
GR T ++K GY I IE AL +P
Sbjct: 370 GRESTDLIKSGGYRIGAGEIETALLGHP 397
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 39.6 bits (93), Expect = 5e-05
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 4 PGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIG 63
G+I + GP + GYLNR D + F + TGD GY +G V+
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDG-----------WFKTGDIGYLDEEGFLYVLD 380
Query: 64 RSDTMVKIRGYTIELQAIEVALRDYP 89
R ++ G I IE L +P
Sbjct: 381 RRSDLIISGGENIYPAEIEEVLLSHP 406
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 39.4 bits (92), Expect = 5e-05
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++ + GP L+ GY RP R G + TGD DG F V
Sbjct: 330 GVPGELLLRGPNLSPGYWRRPQ----------ATARAFTGDGWFRTGDIARRDADGFFWV 379
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R M G + IE L D+P
Sbjct: 380 VDRKKDMFISGGENVYPAEIEAVLADHP 407
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 39.3 bits (92), Expect = 7e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I IGGP++ +GY + + E G+R + TGD G DG E+I R
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVY-KVDER-----GMRWFYTGDIGQFHPDGCLEIIDR 556
Query: 65 SDTMVKIR-GYTIELQAIEVAL 85
+VK++ G + L +E AL
Sbjct: 557 KKDIVKLQHGEYVSLGKVEAAL 578
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 39.2 bits (92), Expect = 8e-05
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I + GP + GY P+ F T + G + TGD G DG + GR
Sbjct: 421 GEILVRGPNVMKGYYKNPEATAEAF--TED------G--WFRTGDLGELDEDGYLVITGR 470
Query: 65 S-DTMVKIRGYTIELQAIEVALRDYP 89
+ + G I + IE L P
Sbjct: 471 KKELIKLSNGKNIAPEPIESKLAKSP 496
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 39.2 bits (92), Expect = 8e-05
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G + I GP + GYL NK ++ NTGD G DG F +
Sbjct: 415 DEVGVLCIAGPNVFSGYLE-AAHNKGLWL----------EDGWLNTGDLGRIDADGYFWL 463
Query: 62 IGRSDTMVKIR-GYTIELQAIEVALRDYP 89
GR+ ++ IR G+ I+ AIE AL +P
Sbjct: 464 TGRAKDLI-IRGGHNIDPAAIEEALLRHP 491
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 38.8 bits (91), Expect = 9e-05
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I I GP + GYLN P+ N+ F + TGD GY DG + GR
Sbjct: 198 GEIVIRGPNVTAGYLNNPEANREAFRD-----------GWFRTGDLGYLDEDGYLFLTGR 246
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
++ G I + +E L +P
Sbjct: 247 IKELINRGGEKISPREVEEVLLRHP 271
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 38.5 bits (90), Expect = 1e-04
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G + + G + GYL RP LN ++TGD DG +
Sbjct: 390 GQIGRLQVRGCSNFGGYLKRPQLNGTDADG------------WFDTGDLARIDADGYIRI 437
Query: 62 IGRSDTMVKIRG-YTIELQAIEVALRDYP 89
GRS ++ IRG I + IE L +P
Sbjct: 438 SGRSKDVI-IRGGENIPVVEIEALLYRHP 465
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 38.4 bits (90), Expect = 2e-04
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
PG++++ GP + GYLN P+ +T E + K + TGD GY DG +
Sbjct: 355 NQPGELWVRGPQVMKGYLNNPE-------ATAETIDKDGWLH---TGDLGYFDEDGYLFI 404
Query: 62 IGRSDTMVKIRGYTI---ELQAI 81
+ R ++K +G+ + EL+A+
Sbjct: 405 VDRLKELIKYKGFQVAPAELEAL 427
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 38.1 bits (89), Expect = 2e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I P L G L + RF +L K G Y+TGD GY DG V
Sbjct: 425 GELGNIVIKLP-LPPGCLLTLWGDDERFKKL--YLNKFPGY--YDTGDSGYKDEDGYLFV 479
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D ++ + G+ + +E ++ +P
Sbjct: 480 MGRTDDVINVAGHRLSTGEMEESVLKHP 507
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 38.0 bits (89), Expect = 2e-04
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP + Y N+P+ F + TGD G DG + +
Sbjct: 283 GEVGEIQVRGPNVFSEYWNKPEATAEAFTEDG----------WFKTGDVGVVDEDGYYRI 332
Query: 62 IGR-SDTMVKIRGYTIELQAIEVALRDYP 89
+GR SD ++K GY + IE AL ++P
Sbjct: 333 LGRKSDDIIKSGGYKVSALEIEEALLEHP 361
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 37.7 bits (88), Expect = 3e-04
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTC-GVRLYNTGDWGYALGDGTFE 60
G G + I GP + GYLN H NTGD G DG
Sbjct: 204 GEVGVLAIRGPNVFPGYLN------------DAHNAGARLEDGWLNTGDLGRIDADGYLW 251
Query: 61 VIGRSDTMVKIR-GYTIELQAIEVALRDYP 89
+ GR+ ++ IR G+ I+ Q IE AL +P
Sbjct: 252 LTGRAKDLI-IRGGHNIDPQMIEEALLRHP 280
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 37.1 bits (87), Expect = 4e-04
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ + GP + GY NRP+ T E L L TGD GY DG F +
Sbjct: 319 GEVGELVVRGPQVMKGYWNRPE-------ETAEVLTDGW---LR-TGDIGYMDEDGYFYI 367
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R M+ + G+ + + IE L +P
Sbjct: 368 VDRKKDMIIVGGFNVYPREIEEVLYSHP 395
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 37.1 bits (86), Expect = 4e-04
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+++I GP + GYLN P + I LR TGD Y DG +
Sbjct: 399 GNCGELWIQGPGVMKGYLNNPKATQST-IDKDGWLR---------TGDIAYFDEDGYLYI 448
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R ++K +G+ I +E L +P
Sbjct: 449 VDRLKEIIKYKGFQIAPADLEAVLISHP 476
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 36.8 bits (86), Expect = 4e-04
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
G++ + GP + GYLN P+ K + +TGD GY DG F
Sbjct: 340 PNERGELCVKGPQIMKGYLNNPEATKETI--DED--------GWLHTGDIGYFDEDGNFY 389
Query: 61 VIGRSDTMVKIRGYTI---ELQAI 81
++ R ++K +GY + EL+A+
Sbjct: 390 IVDRKKELIKYKGYQVPPAELEAV 413
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 36.9 bits (86), Expect = 5e-04
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I + GP + GY NRP+ FI G R + TGD G +G F + R
Sbjct: 385 GEIVVHGPQVFKGYWNRPEATAEAFIEID-------GKRFFRTGDLGRMDEEGYFFITDR 437
Query: 65 SDTMVKIRGY 74
M+ G+
Sbjct: 438 LKRMINASGF 447
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 36.9 bits (86), Expect = 5e-04
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 2 GTPGDIYI----GGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDG 57
G GDI + P L GYL P+ + Y TGD DG
Sbjct: 273 GEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGD-----------WYLTGDRAIKDEDG 321
Query: 58 TFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
F +GR+D ++K GY I +E AL ++P
Sbjct: 322 YFWFVGRADDVIKSSGYRIGPFEVESALIEHP 353
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 36.8 bits (86), Expect = 5e-04
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I I GP + GY P+ F ++TGD G L DGT ++I R
Sbjct: 351 GEICIRGPNVFKGYYKNPEKTAEAFDED----------GWFHTGDIGEWLPDGTLKIIDR 400
Query: 65 SDTMVK 70
+ K
Sbjct: 401 KKNLFK 406
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 36.6 bits (85), Expect = 5e-04
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 2 GTPGDIYI--GGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTF 59
G G++ + G P++ GYL + F+ Y TGD Y DG F
Sbjct: 288 GQVGELALKPGWPSMFRGYLGNEERYASSFVDG-----------WYLTGDLAYRDEDGYF 336
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D ++K G+ + +E AL ++P
Sbjct: 337 WFVGRADDVIKTAGHLVGPFEVESALMEHP 366
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 36.6 bits (85), Expect = 6e-04
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 2 GTPGDIYI--GGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTF 59
G G+I + P + +GY N P+ +F TGD G DG
Sbjct: 284 GEVGEIAVKRPDPVMFLGYWNNPEATAAKFAG-----------DWLLTGDLGRRDADGYL 332
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
GR+D ++K GY I IE L +P
Sbjct: 333 WFKGRADDVIKSSGYRIGPAEIEECLLKHP 362
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 35.7 bits (83), Expect = 0.001
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G + + GPT+ GY P+ N F G + TGD G+ L DG + GR
Sbjct: 401 GRLQVRGPTVTSGYYRNPEANAEAFTED--------G--WFRTGDLGF-LHDGRLTITGR 449
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
M+ I G IE A+ P
Sbjct: 450 EKDMIIINGVNYYNHEIEAAVEQVP 474
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 35.4 bits (82), Expect = 0.001
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLY-NTGDWGYALGDGTFEVIG 63
G I + GP+L GY + S + +TGD GY L DG + G
Sbjct: 412 GHICVRGPSLMSGYFRDEE-------SQ-----DVLAADGWLDTGDLGY-LLDGYLYITG 458
Query: 64 RSDTMVKIRGYTIELQAIE 82
R+ ++ I G I Q IE
Sbjct: 459 RAKDLIIINGRNIWPQDIE 477
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 35.4 bits (82), Expect = 0.001
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ + GP + GY NRP+ F R TGD DG +
Sbjct: 415 GEEGELLVRGPQVFKGYWNRPEETAKSF--LDGWFR---------TGDVVVMEEDGFIRI 463
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R ++ G+ + +E LR++P
Sbjct: 464 VDRIKELIITGGFNVYPAEVEEVLREHP 491
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 35.2 bits (81), Expect = 0.002
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 28 RFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87
+++ P+ + Y T D GT ++GR D M+ G I +E L
Sbjct: 361 GYLNQPQATAEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGR 420
Query: 88 YP 89
P
Sbjct: 421 AP 422
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 34.5 bits (80), Expect = 0.003
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ + GP L +GYL+ PD + T + G + TGD G DG +
Sbjct: 286 GEEGELQVRGPQLFLGYLDPPDNTEA---FTDD------G--WFRTGDLGRLDADGYLRI 334
Query: 62 IGRSDTMVKIR-GYTIELQAIEVALRDYP 89
GR ++ IR G I + IE L +P
Sbjct: 335 TGRKKDII-IRGGENISAREIEDLLLRHP 362
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 34.4 bits (79), Expect = 0.003
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G + + GPT YL+ E++R V TGD DG F
Sbjct: 337 GEAGRLAVRGPT-GCRYLDDE--------RQQEYVRDGWNV----TGDIFRQDEDGYFHY 383
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ RSD M+ GY I +E AL +P
Sbjct: 384 VARSDDMIVSAGYNIAAPEVEDALLTHP 411
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 34.6 bits (79), Expect = 0.003
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I I G TL GY R DL K I H TGD G +G+ ++I R
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVLIDGWLH-----------TGDVGEWQPNGSMKIIDR 517
Query: 65 SDTMVKI-RGYTIELQAIE 82
+ K+ +G + ++ IE
Sbjct: 518 KKNIFKLSQGEYVAVENIE 536
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 34.3 bits (79), Expect = 0.003
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 43 RLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
R Y TGD DG F IGR+D ++ GY I +E AL ++P
Sbjct: 317 RWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHP 363
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 34.5 bits (80), Expect = 0.004
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 28 RFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87
RF+ T G ++Y+T DWG DG + ++GR+D ++ + G+ + + IE ++
Sbjct: 461 RFVKT---YWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISS 517
Query: 88 YP 89
+P
Sbjct: 518 HP 519
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 34.3 bits (79), Expect = 0.004
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 45 YNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
Y+TGD + DG +GR+D ++K GY I +E AL +P
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHP 458
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 34.2 bits (78), Expect = 0.004
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP + GY N+P+ T L+ +TGD GY DG F V
Sbjct: 401 GEIGEIVVKGPQIMKGYWNKPE-------ETAAVLQDG----WLHTGDVGYMDEDGFFYV 449
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDY 88
R M+ G+ + + +E L ++
Sbjct: 450 KDRKKDMIVASGFNVYPREVEEVLYEH 476
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 34.0 bits (79), Expect = 0.005
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP + GY NRP+ + +TGD GY DG +
Sbjct: 193 GEVGEIVVRGPAVMAGYWNRPEAT-----------AEALRDGWLHTGDLGYLDEDGYLYI 241
Query: 62 IGRSDTMVKIRG----YTIELQAIEVALRDYP 89
+ R M+ I G Y E +E L +P
Sbjct: 242 VDRKKDMI-ISGGENIYPAE---VENVLLAHP 269
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 33.9 bits (78), Expect = 0.005
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 33 PEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
PE Y TGD Y DG +GR+D + K Y I +E AL ++P
Sbjct: 298 PEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHP 354
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 33.9 bits (78), Expect = 0.006
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 33 PEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
PE + G + T D GY GT +GR D ++ + G + +E + P
Sbjct: 281 PEEIVVKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLP 337
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 33.9 bits (78), Expect = 0.006
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I + GP + Y NRP+ K+ IS + + GD GY G GR
Sbjct: 299 GEIIVSGPHVTREYYNRPEATKLAKISDGNRI-------WHRMGDLGYFDDQGRLWFCGR 351
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
V+ G T+ +E +P
Sbjct: 352 KAHRVETAGGTLFTVPVEQVFNRHP 376
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 33.8 bits (78), Expect = 0.006
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G PG+I I GP + GY NRPD E + + TGD G G +
Sbjct: 403 LGEPGEICIRGPQVMAGYWNRPD----------ETAKVMTADGFFRTGDVGVMDERGYTK 452
Query: 61 VIGRSDTMVKIRGYTIELQAIE 82
++ R M+ + G+ + IE
Sbjct: 453 IVDRKKDMILVSGFNVYPNEIE 474
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 32.9 bits (76), Expect = 0.010
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + G ++ GY N P+ +T E + +TGD GY DG +
Sbjct: 197 GEVGEICVRGYSVMKGYYNDPE-------ATAEAIDAD---GWLHTGDLGYMDEDGYLRI 246
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR M+ G I IE AL +P
Sbjct: 247 VGRIKDMIIRGGENIYPAEIEEALLTHP 274
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 33.0 bits (76), Expect = 0.010
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 24/90 (26%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G+I I +LA+GY P+ L ++ T D GY G +
Sbjct: 299 NQTGNITIQAQSLALGYY-------------PQILDSQ---GIFETDDLGYLDAQGYLHI 342
Query: 62 IGRSDTMVKIRG----YTIELQAIEVALRD 87
+GR+ + I G Y E +E A+
Sbjct: 343 LGRNSQKI-ITGGENVYPAE---VEAAILA 368
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 33.0 bits (76), Expect = 0.012
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ GP GY P+ N F T + G Y TGD DG + V
Sbjct: 333 GEVGELLTRGPYTIRGYYRAPEHNARAF--TDD------G--FYRTGDLVRIDADGYYRV 382
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR + G I + IE L +P
Sbjct: 383 VGRIKDQINRGGEKISPEEIENLLLSHP 410
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 32.6 bits (74), Expect = 0.014
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 44 LYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
LY++ DWG DG ++GR+D ++ + G+ + + IE ++ +P
Sbjct: 473 LYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHP 518
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 32.5 bits (75), Expect = 0.014
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 2 GTPGDIYI---GGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGT 58
G G++ + + GY P+ +T + R +TGD G DG
Sbjct: 269 GEVGELVVRPRRPWAMFKGYYGMPE-------ATAKAWR---NGWF-HTGDRGRRDEDGF 317
Query: 59 FEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R ++ RG I +E A+ +P
Sbjct: 318 LYFVDRKKDAIRRRGENISSYEVEAAILAHP 348
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 32.3 bits (73), Expect = 0.022
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLY-NTGDWGYALGDGTFEV 61
TPG++ + + GY N NK E +T + +TGD GY DG +
Sbjct: 387 TPGELCVRSQCVMQGYYN----NK-------EETDRTIDEDGWLHTGDIGYIDDDGDIFI 435
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R ++K +G+ + +E L +P
Sbjct: 436 VDRIKELIKYKGFQVAPAELEAILLTHP 463
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 32.2 bits (74), Expect = 0.023
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 48 GDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
GDW DG + ++GRSD +K+ G + IE L +P
Sbjct: 340 GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHP 381
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 31.9 bits (73), Expect = 0.027
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
G PG++++ GP + +GY RP+ +T E ++ TGD +G
Sbjct: 401 PGEPGELWVKGPQVMLGYWQRPE-------ATDEVIKDG----WLATGDIAVMDEEGFLR 449
Query: 61 VIGRSDTMVKIRGYTIELQAIE--VAL 85
++ R M+ + G+ + IE V L
Sbjct: 450 IVDRKKDMILVSGFNVYPNEIEDVVML 476
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 31.7 bits (72), Expect = 0.028
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 1 MGTP--GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGT 58
+G P G+I + G L GY P+L T E ++ ++TGD G L +G
Sbjct: 460 LGEPPRGEICVRGKCLFSGYYKNPEL-------TEEVMKDG----WFHTGDIGEILPNGV 508
Query: 59 FEVIGRSDTMVKI-RGYTIELQAIE 82
++I R ++K+ +G + L+ +E
Sbjct: 509 LKIIDRKKNLIKLSQGEYVALEYLE 533
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 31.8 bits (72), Expect = 0.033
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G + + G + GYL RP HL T ++TGD + +G +
Sbjct: 388 GETGRLLVRGCSNFGGYLKRP------------HLNSTDAEGWFDTGDLAFQDAEGYIRI 435
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GRS ++ G I + IE L +P
Sbjct: 436 NGRSKDVIIRGGENIPVVEIENLLYQHP 463
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 31.6 bits (72), Expect = 0.038
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPD------LNKMRFISTPEHLRKTC-GVRLYNTGDWGYAL 54
G G+I++ G + GY +P+ N ++ + H TGD+G
Sbjct: 416 GQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF 475
Query: 55 GDGTFEVIGRSDTMVKIRG 73
DG + GR +V I G
Sbjct: 476 -DGELYITGRVKDLVIIDG 493
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 31.5 bits (72), Expect = 0.039
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 20/82 (24%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFIS--------TPEH--LRKTCGVRLYNTGDWG 51
GT G+I++ G +A GY +P+ + F + TPE LR TGD G
Sbjct: 395 GTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLR---------TGDLG 445
Query: 52 YALGDGTFEVIGRSDTMVKIRG 73
+ + +G ++GR ++ + G
Sbjct: 446 F-ISEGELFIVGRIKDLLIVDG 466
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 31.4 bits (71), Expect = 0.041
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I + G TL GY R DL + I H TGD G +G ++I R
Sbjct: 466 GEICLRGNTLFSGYHKRQDLTEEVLIDGWFH-----------TGDIGEWQPNGAMKIIDR 514
Query: 65 SDTMVKI-RGYTIELQAIEVALRDY 88
+ K+ +G E A+E Y
Sbjct: 515 KKNIFKLSQG---EYVAVENLENTY 536
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 31.5 bits (71), Expect = 0.044
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVI 62
T G+I I G ++ GYL P +T E + NTGD G DG E+
Sbjct: 391 TMGEIVIKGSSIMKGYLKNPK-------ATSEAFKHG----WLNTGDVGVIHPDGHVEIK 439
Query: 63 GRSDTMVKIRGYTIELQAIEVALRDYP 89
RS ++ G I +E L YP
Sbjct: 440 DRSKDIIISGGENISSVEVENVLYKYP 466
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 31.2 bits (71), Expect = 0.053
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 2 GTPGDIYIGG---PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGT 58
G G+I I G T+ Y P +T + L + TGD GY +G
Sbjct: 364 GEIGEICIKGVPGKTIFKEYYLDPK-------ATAKVLEADGWLH---TGDTGYVDEEGF 413
Query: 59 FEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
F + R M+K G + +E + +P
Sbjct: 414 FYFVDRRCNMIKRGGENVSCVELENIIATHP 444
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 31.1 bits (71), Expect = 0.053
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP + GY NRP+ T E R L+ TGD DG + +
Sbjct: 363 GEVGEICVRGPLVMDGYWNRPEE-------TAEAFR---DGWLH-TGDVAREDEDGFYYI 411
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R M+ G+ + + +E L ++P
Sbjct: 412 VDRKKDMIVTGGFNVFPREVEDVLAEHP 439
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 30.6 bits (69), Expect = 0.068
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++++ G T+ GYL P + F T LR TGD G G +
Sbjct: 378 GAVGEVWLRGTTVVRGYLGDPTITAANF--TDGWLR---------TGDLGSLSAAGDLSI 426
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GR ++ G I + +E L +P
Sbjct: 427 RGRIKELINRGGEKISPERVEGVLASHP 454
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 30.6 bits (69), Expect = 0.080
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 41 GVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVAL 85
G Y TGD GY G + GR VKI + L+A+E L
Sbjct: 408 GETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESIL 452
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 30.3 bits (68), Expect = 0.083
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 46 NTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+TGD GY G ++GR D M+ G + +A+E AL +P
Sbjct: 399 STGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHP 442
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 30.3 bits (69), Expect = 0.11
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I P L +GY + P+ T E R G +++GD G +G V
Sbjct: 365 GEVGEIVHRSPQLMLGYWDDPEK-------TAEAFR--GG--WFHSGDLGVMDEEGYITV 413
Query: 62 IGRSDTMVK 70
+ R M+K
Sbjct: 414 VDRKKDMIK 422
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 29.9 bits (68), Expect = 0.13
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 4 PGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIG 63
PG+I I GP + GYLN P+ I L +TGD GY D ++
Sbjct: 383 PGEICIRGPQIMKGYLNDPEATA-NTIDKDGWL---------HTGDIGYIDDDDELFIVD 432
Query: 64 RSDTMVKIRGYTI---ELQAIEVA 84
R ++K +G+ + EL+A+ ++
Sbjct: 433 RLKELIKYKGFQVAPAELEALLIS 456
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 29.9 bits (68), Expect = 0.15
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G I G + +GY P+ T E GVR GD DGT +
Sbjct: 375 GEIGWIARRGH-IPLGYYKDPE-------KTAETFPTIDGVRYAIPGDRARVEADGTITL 426
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR + G + + +E AL+ +P
Sbjct: 427 LGRGSVCINTGGEKVFPEEVEEALKAHP 454
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 29.7 bits (67), Expect = 0.18
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G G++ + GP + GY RP+ +T E L ++ TGD DG
Sbjct: 401 LGEVGELCVKGPQVMKGYWQRPE-------ATDEILDSDGWLK---TGDIALIQEDGYMR 450
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++ R M+ + G+ + +E L P
Sbjct: 451 IVDRKKDMILVSGFNVYPNELEDVLAALP 479
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 29.3 bits (66), Expect = 0.20
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 9 IGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTM 68
GP GY N P+ + E +R GV Y +GD Y DG GR
Sbjct: 358 TAGPGGFEGYYNDPE-------ADAERMRG--GV--YWSGDLAYRDADGYAYFAGRLGDW 406
Query: 69 VKIRGYTIELQAIEVALRDYP 89
+++ G + IE L YP
Sbjct: 407 MRVDGENLGTAPIERILLRYP 427
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 29.1 bits (66), Expect = 0.22
Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G +Y Y N P+ K GD GY DG +
Sbjct: 338 GEIGTVYFEMDGYPFEYHNDPE--KTA--------AARNPHGWVTVGDVGYLDEDGYLYL 387
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
R M+ G I Q IE L +P
Sbjct: 388 TDRKSDMIISGGVNIYPQEIENLLVTHP 415
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 29.0 bits (66), Expect = 0.23
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP L GY NRP+ +T E + G +TGD GY DG +
Sbjct: 365 GEVGEIIVRGPWLMQGYWNRPE-------ATAETIDG--G--WLHTGDVGYIDEDGYLYI 413
Query: 62 IGRSDTMVKIRG---YTIELQAIEVALRDYP 89
R ++ G Y EL E AL +P
Sbjct: 414 TDRIKDVIISGGENIYPREL---EDALYGHP 441
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 29.0 bits (65), Expect = 0.27
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVI 62
T G+I + G + GYL P N+ F + +++GD G DG E+
Sbjct: 401 TMGEIVMRGNMVMKGYLKNPKANEEAFANG-----------WFHSGDLGVKHPDGYIEIK 449
Query: 63 GRSDTMVKIRGYTIELQAIEVALRDYP 89
RS ++ G I +E + +P
Sbjct: 450 DRSKDIIISGGENISSLEVENVVYTHP 476
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 28.8 bits (64), Expect = 0.30
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPD 23
G GD+++ GP +A GY NRPD
Sbjct: 337 GVEGDLWVRGPAIAKGYWNRPD 358
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 28.6 bits (64), Expect = 0.34
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G G++ I GP + GY +P+ +T E L + TGD DG
Sbjct: 409 LGERGELCIKGPQVMKGYWQQPE-------ATAEALDAEGWFK---TGDIAVIDPDGFVR 458
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++ R ++ + G+ + IE + +P
Sbjct: 459 IVDRKKDLIIVSGFNVYPNEIEDVVMAHP 487
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 28.8 bits (65), Expect = 0.34
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G I GG + +GY P+ T + R+ GVR GD+ DGT +
Sbjct: 213 GEVGWIARGGR-VPLGYYKDPEK-------TAKTFREIDGVRYAVPGDFARVEADGTITL 264
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR + G + + +E AL+ +P
Sbjct: 265 LGRGSVCINTGGEKVFPEEVEEALKAHP 292
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 28.7 bits (65), Expect = 0.35
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 28 RFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87
R++ T + K G Y TGD DG + ++GR D ++ + G+ + +E AL
Sbjct: 452 RYVKT--YFSKFPGY--YFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVS 507
Query: 88 YP 89
+P
Sbjct: 508 HP 509
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 28.7 bits (65), Expect = 0.40
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRL----YNTGDWGYALGDGTFE 60
G+I + GP + GY P+ T +TGD G DG
Sbjct: 283 GEILVRGPNVMKGYYKNPE--------------ATAEALDEDGWLHTGDIGRLDEDGFLV 328
Query: 61 VIGR-SDTMVKIRGYTIELQAIEVALR 86
+ R D +V G I Q IE AL+
Sbjct: 329 ITDRKKDLIVTAGGKNIAPQPIENALK 355
>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol
dehydrogenases. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes or ketones. This group includes alcohol
dehydrogenases corresponding to mammalian classes I, II,
IV. Alcohol dehydrogenase in the liver converts ethanol
and NAD+ to acetaldehyde and NADH, while in yeast and
some other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which have a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. A GxGxxG motif
after the first mononucleotide contact half allows the
close contact of the coenzyme with the ADH backbone.
The N-terminal catalytic domain has a distant homology
to GroES. These proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and have 2 tightly bound zinc atoms per
subunit, a catalytic zinc at the active site and a
structural zinc in a lobe of the catalytic domain.
NAD(H) binding occurs in the cleft between the catalytic
and coenzyme-binding domains at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding. In human ADH
catalysis, the zinc ion helps coordinate the alcohol,
followed by deprotonation of a histidine (His-51), the
ribose of NAD, a serine (Ser-48) , then the alcohol,
which allows the transfer of a hydride to NAD+, creating
NADH and a zinc-bound aldehyde or ketone. In yeast and
some bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 373
Score = 28.0 bits (63), Expect = 0.63
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 56 DGTFEVIGRSDTMV 69
D +FEVIGR DTM
Sbjct: 262 DFSFEVIGRLDTMK 275
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found
in all three forms of life.
Length = 270
Score = 27.6 bits (62), Expect = 0.74
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 49 DWGYALGDGTFEVI 62
D G+ GDG +EVI
Sbjct: 18 DRGFLFGDGVYEVI 31
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 27.0 bits (60), Expect = 1.3
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I I G + +GYLN + T E + + + ++GD G+ DG + GR
Sbjct: 391 GEICIWGRHVFMGYLNMEE-------KTEEAIDEDGWL---HSGDLGFLDDDGFLYITGR 440
Query: 65 SDTMVKIRG 73
++ G
Sbjct: 441 IKELIITAG 449
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 27.2 bits (61), Expect = 1.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 45 YNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
Y TGD DG + GR D ++ + G+ + IE AL +P
Sbjct: 477 YFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHP 521
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 27.0 bits (60), Expect = 1.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 47 TGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GD GY +G V+GR D M+ G + +E L +P
Sbjct: 420 SGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHP 462
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 26.9 bits (60), Expect = 1.7
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 11 GPTLAIGYLNRPDLNKMRF 29
GP + GY P+L F
Sbjct: 430 GPNVTPGYHKDPELTAAAF 448
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 26.5 bits (58), Expect = 2.2
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G +Y L YLN P+ K P H T GD G DG +
Sbjct: 346 GRIGTVYFERDRLPFRYLNDPE--KTAAAQHPAHPFWT------TVGDLGSVDEDGYLYL 397
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
R M+ G I Q E AL +P
Sbjct: 398 ADRKSFMIISGGVNIYPQETENALTMHP 425
>gnl|CDD|203028 pfam04494, TFIID_90kDa, WD40 associated region in TFIID subunit.
This region, possibly a domain is found in subunits of
transcription factor TFIID. The function of this region
is unknown.
Length = 141
Score = 26.0 bits (58), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 23 DLNKMRFISTPEHLRKTCGVRLYNT 47
D+ K+R IS PEHL++ R +
Sbjct: 78 DIEKLRSISLPEHLKENELARAFRD 102
>gnl|CDD|165411 PHA03139, PHA03139, helicase-primase primase subunit; Provisional.
Length = 860
Score = 26.5 bits (58), Expect = 2.4
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 13/50 (26%)
Query: 4 PGD-----IYIGGPTLAIGYLNRPDLNKMRFIS--------TPEHLRKTC 40
PG+ IY G + IGY+ + D++K + + PE R +C
Sbjct: 617 PGECFDIGIYHTGHCIRIGYMYKTDMDKGKMLHGRLTPIFIVPEGYRNSC 666
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 26.2 bits (58), Expect = 2.6
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 23/96 (23%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRL---------------YN 46
G G+I++ G + GY RP+ + F RL
Sbjct: 427 GEVGEIWLHGDNIGRGYWGRPEETERTF-------GAKLQSRLAEGSHADGAADDGTWLR 479
Query: 47 TGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIE 82
TGD G L DG + GR ++ I G Q IE
Sbjct: 480 TGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIE 514
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 26.1 bits (57), Expect = 3.1
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G ++I P +GY N PE + NTGD DG F + GR
Sbjct: 375 GTLWIKSPANMLGYWN-----------NPERTAEVLIDGWVNTGDLLERREDGFFYIKGR 423
Query: 65 SDTMVKIRGYTI 76
S M+ G I
Sbjct: 424 SSEMIICGGVNI 435
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 25.9 bits (57), Expect = 3.4
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 19/92 (20%)
Query: 2 GTPGDIYIGGPTLAIGYLN----RPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDG 57
G G +Y+ P +GY+ +LN +++ D GY +G
Sbjct: 331 GEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTV---------------RDVGYEDEEG 375
Query: 58 TFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++GR M+ G I + IE L ++P
Sbjct: 376 FIYIVGREKNMILFGGINIFPEEIESVLHEHP 407
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 26.0 bits (57), Expect = 3.6
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ I GP + Y NRPD +T E ++ TGD DG +
Sbjct: 341 GEVGELLIRGPNVMKEYWNRPD-------ATEETIQDG----WLCTGDLARVDEDGFVYI 389
Query: 62 IGRSDTMVKIRG----YTIEL-QAI 81
+GR M+ I G Y +E+ Q I
Sbjct: 390 VGRKKEMI-ISGGENIYPLEVEQVI 413
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 25.8 bits (57), Expect = 3.7
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP + GY N P+ N F + TGD G+ G +
Sbjct: 364 GETGEICVIGPAVFAGYYNNPEANAKAFRDG-----------WFRTGDLGHLDARGFLYI 412
Query: 62 IGRSDTM 68
GR+ M
Sbjct: 413 TGRASDM 419
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 26.0 bits (57), Expect = 3.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 45 YNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
Y +GD DG + + GR D ++ + G+ I +E AL +P
Sbjct: 515 YFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHP 559
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 25.6 bits (57), Expect = 4.0
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 5 GDIYIGGPTLAIGY 18
G+I++ G +LA+GY
Sbjct: 305 GEIWLRGASLALGY 318
>gnl|CDD|151805 pfam11364, DUF3165, Protein of unknown function (DUF3165). Some
members in this family of proteins are annotated as
membrane proteins however this cannot be confirmed.
Currently there is no known function.
Length = 82
Score = 24.6 bits (54), Expect = 4.9
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMR 28
P +I++G + +GY D+ ++
Sbjct: 50 FQLPPEIFVGIGMIILGYFALRDIRRLT 77
>gnl|CDD|227156 COG4819, EutA, Ethanolamine utilization protein, possible
chaperonin protecting lyase from inhibition [Amino acid
transport and metabolism].
Length = 473
Score = 25.2 bits (55), Expect = 5.3
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 24/88 (27%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
GDI GP L P L +M++ E +R T V+G
Sbjct: 282 GDI---GPLLGKAIHEHPRLREMKYQFPAETIRAT---------------------VVGA 317
Query: 65 SDTMVKIRGYTIELQAIEVALRDYPVSR 92
++I G TI + + L++ PV++
Sbjct: 318 GAHTLEISGSTITYTDVILPLKNIPVAK 345
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain. Two DNA binding proteins,
RAV1 and RAV2 from Arabidopsis thaliana contain two
distinct amino acid sequence domains found only in
higher plant species. The N-terminal regions of RAV1
and RAV2 are homologous to the AP2 DNA-binding domain
(see ) present in a family of transcription factors,
while the C-terminal region exhibits homology to the
highly conserved C-terminal domain, designated B3, of
VP1/ABI3 transcription factors. The AP2 and B3-like
domains of RAV1 bind autonomously to the CAACA and
CACCTG motifs, respectively, and together achieve a
high affinity and specificity of binding. It has been
suggested that the AP2 and B3-like domains of RAV1 are
connected by a highly flexible structure enabling the
two domains to bind to the CAACA and CACCTG motifs in
various spacings and orientations.
Length = 96
Score = 24.6 bits (54), Expect = 5.8
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 41 GVRLYNTGDWG-----YALGDG---TFEVIGRSDTMVKIRG 73
TG W L G TFE+ G + +V I
Sbjct: 55 SGMFLLTGGWKEFVKANGLKAGDSLTFELDGNGEFVVSIFR 95
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 25.1 bits (55), Expect = 6.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 2 GTPGDIYIGGPTLAIGYLNRP 22
G G+I PTL GY N P
Sbjct: 369 GEVGEIVYRAPTLMSGYWNNP 389
>gnl|CDD|173895 cd00517, ATPS, ATP-sulfurylase. ATP-sulfurylase (ATPS), also known
as sulfate adenylate transferase, catalyzes the transfer
of an adenylyl group from ATP to sulfate, forming
adenosine 5'-phosphosulfate (APS). This reaction is
generally accompanied by a further reaction, catalyzed
by APS kinase, in which APS is phosphorylated to yield
3'-phospho-APS (PAPS). In some organisms the APS kinase
is a separate protein, while in others it is
incorporated with ATP sulfurylase in a bifunctional
enzyme that catalyzes both reactions. In bifunctional
proteins, the domain that performs the kinase activity
can be attached at the N-terminal end of the sulfurylase
unit or at the C-terminal end, depending on the
organism. While the reaction is ubiquitous among
organisms, the physiological role of the reaction
varies. In some organisms it is used to generate APS
from sulfate and ATP, while in others it proceeds in the
opposite direction to generate ATP from APS and
pyrophosphate. ATP sulfurylase can be a monomer, a
homodimer, or a homo-oligomer, depending on the
organism. ATPS belongs to a large superfamily of
nucleotidyltransferases that includes pantothenate
synthetase (PanC), phosphopantetheine
adenylyltransferase (PPAT), and the amino-acyl tRNA
synthetases. The enzymes of this family are structurally
similar and share a dinucleotide-binding domain.
Length = 353
Score = 25.3 bits (56), Expect = 6.1
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLR 37
GD +GGP + PD ++ R TP LR
Sbjct: 118 GDWLVGGPIEVLELPPFPDFDQYRL--TPAELR 148
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 25.1 bits (55), Expect = 6.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 49 DWGYALGDGTFEVI 62
D GY GDG +EVI
Sbjct: 20 DRGYQFGDGVYEVI 33
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 24.9 bits (55), Expect = 7.5
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G +++ GP + +GYL + P Y+TGD +G + GR
Sbjct: 982 GRLFVRGPNVMLGYL---RAENPGVLEPPA-------DGWYDTGDIVTIDEEGFITIKGR 1031
Query: 65 SDTMVKIRGYTIELQAIE 82
+ KI G I L A+E
Sbjct: 1032 AKRFAKIAGEMISLAAVE 1049
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 25.0 bits (55), Expect = 7.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 45 YNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVA 84
+TGD GY +G V GR ++ + G I IE A
Sbjct: 416 LDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERA 455
>gnl|CDD|222950 PHA02952, PHA02952, EEV maturation protein; Provisional.
Length = 648
Score = 25.0 bits (55), Expect = 7.8
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 66 DTMVKIRGYTI-ELQAIE 82
+T V++ GY I EL A+E
Sbjct: 521 ETAVRLGGYKIKELGALE 538
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 24.6 bits (54), Expect = 8.5
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 17 GYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTI 76
GY N P+ +T E +R +Y +GD Y DG GR+ +++ G +
Sbjct: 365 GYYNNPE-------ATAERMRHG----MYWSGDLAYRDADGWIYFAGRTADWMRVDGENL 413
Query: 77 ELQAIEVALRDYP 89
IE L +P
Sbjct: 414 SAAPIERILLRHP 426
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 24.9 bits (55), Expect = 8.6
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I + GP L GY + +L + ++TGD G +GT +IGR
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDG----------WFHTGDVGSIAANGTLRIIGR 557
Query: 65 SDTMVK-IRGYTIELQAIE 82
+ K G I L+A+E
Sbjct: 558 VKALAKNCLGEYIALEALE 576
>gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase.
Length = 473
Score = 24.6 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 8 YIGGPTLAIGYLNRPDL 24
Y+GGPT+A+ L PD+
Sbjct: 11 YVGGPTMAVIALKCPDI 27
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.144 0.443
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,982,008
Number of extensions: 415946
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 152
Length of query: 92
Length of database: 10,937,602
Length adjustment: 59
Effective length of query: 33
Effective length of database: 8,320,716
Effective search space: 274583628
Effective search space used: 274583628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)