RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4547
(92 letters)
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 81.1 bits (199), Expect = 3e-20
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ IGG LA GY RP+L +F+ P G +LY TGD L DG E
Sbjct: 354 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPF----VPGEKLYKTGDQARWLSDGNIEY 409
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D VKIRG+ +EL+ +E L +
Sbjct: 410 LGRIDNQVKIRGHRVELEEVESILLKHM 437
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 74.7 bits (183), Expect = 5e-18
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 2 GTPGDIYIGG--PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTF 59
T G++ I P A + + + ST + +Y +GD DG +
Sbjct: 455 ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK--------NMYFSGDGARRDEDGYY 506
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ GR D ++ + G+ + IE AL +P
Sbjct: 507 WITGRVDDVLNVSGHRLGTAEIESALVAHP 536
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 73.8 bits (180), Expect = 1e-17
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G++ + GP + GY + + + TGD +G E+
Sbjct: 374 KALGEVQLKGPWITGGYYGNEEATRSALTPDG----------FFRTGDIAVWDEEGYVEI 423
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
R ++K G I +E AL +P
Sbjct: 424 KDRLKDLIKSGGEWISSVDLENALMGHP 451
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 71.5 bits (174), Expect = 8e-17
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G++ + GP + GY+N P+ ++GD Y D F +
Sbjct: 382 NQRGELCVRGPMIMSGYVNNPEATNALID----------KDGWLHSGDIAYWDEDEHFFI 431
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R +++K +GY + +E L +P
Sbjct: 432 VDRLKSLIKYKGYQVAPAELESILLQHP 459
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 63.7 bits (154), Expect = 4e-14
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 2 GTPGDIYIGG--PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTF 59
G + + P+ A D +++ Y TGD DG
Sbjct: 445 HAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP--------GYYFTGDGAAKDKDGYI 496
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++GR D +V + G+ + IE A+ + P
Sbjct: 497 WILGRVDDVVNVSGHRLSTAEIEAAIIEDP 526
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 55.0 bits (131), Expect = 5e-11
Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G + GP GY + N F Y TGD DG V
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASF----------TEDGFYRTGDIVRLTRDGYIVV 425
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GR+ + G + + +E L +P
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHLLAHP 453
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 52.7 bits (125), Expect = 3e-10
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 7 IYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSD 66
I + +GYLN+P + Y T D +GT ++GR D
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQD-----------GWYRTSDVAVWTPEGTVRILGRVD 402
Query: 67 TMVKIRGYTIELQAIEVALRDYP 89
M+ G I IE L P
Sbjct: 403 DMIISGGENIHPSEIERVLGTAP 425
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 25.8 bits (55), Expect = 0.73
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 49 DWGYALGDGTFEVI 62
D GDG F
Sbjct: 16 DRATQFGDGCFTTA 29
>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 134
Score = 25.1 bits (55), Expect = 1.0
Identities = 2/25 (8%), Positives = 14/25 (56%)
Query: 21 RPDLNKMRFISTPEHLRKTCGVRLY 45
++N++ +++ +H+++ +
Sbjct: 65 GSEINRLFSVNSIDHIKENEVASAF 89
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 25.3 bits (54), Expect = 1.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 49 DWGYALGDGTFEVI 62
D GY GDG +EV+
Sbjct: 21 DRGYQFGDGVYEVV 34
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 48
Score = 23.9 bits (52), Expect = 1.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 66 DTMVKIRGYTIELQAIEVALRDY 88
D++ + RGY +AI LR
Sbjct: 17 DSLSQRRGYNNRSEAIRDILRSA 39
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 119
Score = 25.1 bits (55), Expect = 1.2
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 52 YALGDGTF----EVIGRSDTMVKIRGYTIELQAIEVAL 85
YA+ +GT + G +++ G + E A+
Sbjct: 72 YAIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAI 109
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR,
N-terminal domain {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 50
Score = 23.9 bits (52), Expect = 1.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 66 DTMVKIRGYTIELQAIEVALRDY 88
D +++ GY +AI +RD+
Sbjct: 19 DQIIEEIGYENRSEAIRDLIRDF 41
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla
campanulata) [TaxId: 81759]}
Length = 119
Score = 23.4 bits (50), Expect = 3.9
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 23 DLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQ 79
D N + + L C L G + + +S K Y + LQ
Sbjct: 46 DNNNPIWATNTGGLGNGCRAVLQPDGV--LVVITNENVTVWQSPVAGKAGHYVLVLQ 100
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 23.8 bits (50), Expect = 4.2
Identities = 4/14 (28%), Positives = 4/14 (28%)
Query: 49 DWGYALGDGTFEVI 62
G FE I
Sbjct: 23 SHALHYGTSVFEGI 36
>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID
{Encephalitozoon cuniculi [TaxId: 6035]}
Length = 131
Score = 23.2 bits (50), Expect = 4.7
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 23 DLNKMRFISTPEHLRKTCGVRLY 45
++ + I T +H+ + +
Sbjct: 65 EIKQFESIYTVQHIHENNFAYTF 87
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 22.4 bits (48), Expect = 5.2
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 38 KTCGVRLYNTGDWGYALGDGT 58
K C + + +G+ G G
Sbjct: 24 KGCYAKNFGPKGFGFGQGAGA 44
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase
PF1904 {Pyrococcus furiosus [TaxId: 2261]}
Length = 110
Score = 23.2 bits (50), Expect = 5.4
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 52 YALGDGTFEVIGRSDTMVKIRGYTIELQAIEVAL 85
YA+ +GT + + +++I G + E AL
Sbjct: 74 YAMPEGT--IFHPYEPVLQIEGDYADFGIYETAL 105
>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 23.2 bits (50), Expect = 6.2
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 23 DLNKMRFISTPEHLRKTCGVRLY 45
DL + ++ EH++ + +
Sbjct: 84 DLRVLSSLTKKEHMKGNETMLDF 106
>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 337
Score = 23.0 bits (48), Expect = 7.9
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 41 GVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80
G+ + +WG +G FE MV + + L+
Sbjct: 257 GIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKK 296
>d1zc6a2 c.55.1.5 (A:122-292) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 171
Score = 22.7 bits (48), Expect = 9.8
Identities = 8/46 (17%), Positives = 12/46 (26%), Gaps = 13/46 (28%)
Query: 43 RLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDY 88
G WGY GD G + +A ++
Sbjct: 22 SHREAGGWGYPSGDEA-------------SGAWLGQRAAQLTQMAL 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.144 0.443
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,363
Number of extensions: 16488
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 22
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)