BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy455
         (58 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JHB|A Chain A, Core Binding Factor Beta
          Length = 143

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAM 36
           +NGVCV W+GW+DL RLDG+GCLE+DEE+A  EDA+
Sbjct: 105 LNGVCVIWKGWIDLHRLDGMGCLEFDEERAQQEDAL 140


>pdb|1IO4|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
           Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
           Homodimer Bound To A Dna Fragment From The Csf-1r
           Promoter
 pdb|1ILF|A Chain A, Nmr Structure Of Apo Cbfb
          Length = 141

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAM 36
           +NGVCV W+GW+DL RLDG+GCLE+DEE+A  EDA+
Sbjct: 103 LNGVCVIWKGWIDLHRLDGMGCLEFDEERAQQEDAL 138


>pdb|1CL3|A Chain A, Molecular Insights Into Pebp2CBF-Smmhc Associated Acute
           Leukemia Revealed From The Three-Dimensional Structure
           Of Pebp2CBF BETA
          Length = 138

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAM 36
           +NGVCV W+GW+DL RLDG+GCLE+DEE+A  EDA+
Sbjct: 100 LNGVCVIWKGWIDLHRLDGMGCLEFDEERAQQEDAL 135


>pdb|1H9D|B Chain B, Aml1CBF-BetaDNA COMPLEX
 pdb|1H9D|D Chain D, Aml1CBF-BetaDNA COMPLEX
 pdb|1E50|B Chain B, Aml1CBF COMPLEX
 pdb|1E50|D Chain D, Aml1CBF COMPLEX
 pdb|1E50|F Chain F, Aml1CBF COMPLEX
 pdb|1E50|H Chain H, Aml1CBF COMPLEX
          Length = 134

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 30/33 (90%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIE 33
           +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  E
Sbjct: 102 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQE 134


>pdb|2P7H|A Chain A, Crystal Structure Of A Sam Dependent Methyl-Transferase
           Type 12 Family Protein (Eca1738) From Pectobacterium
           Atrosepticum Scri1043 At 1.85 A Resolution
 pdb|2P7H|B Chain B, Crystal Structure Of A Sam Dependent Methyl-Transferase
           Type 12 Family Protein (Eca1738) From Pectobacterium
           Atrosepticum Scri1043 At 1.85 A Resolution
 pdb|2P7H|C Chain C, Crystal Structure Of A Sam Dependent Methyl-Transferase
           Type 12 Family Protein (Eca1738) From Pectobacterium
           Atrosepticum Scri1043 At 1.85 A Resolution
 pdb|2P7H|D Chain D, Crystal Structure Of A Sam Dependent Methyl-Transferase
           Type 12 Family Protein (Eca1738) From Pectobacterium
           Atrosepticum Scri1043 At 1.85 A Resolution
 pdb|2P7I|A Chain A, Crystal Structure Of A Sam Dependent Methyl-Transferase
           Type 12 Family Protein (Eca1738) From Pectobacterium
           Atrosepticum Scri1043 At 1.74 A Resolution
 pdb|2P7I|B Chain B, Crystal Structure Of A Sam Dependent Methyl-Transferase
           Type 12 Family Protein (Eca1738) From Pectobacterium
           Atrosepticum Scri1043 At 1.74 A Resolution
          Length = 250

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 15  ERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
           E  + + C+E  EE        L+D I   + R  DA L  RY
Sbjct: 62  EHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRY 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.144    0.469 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,824,464
Number of Sequences: 62578
Number of extensions: 53319
Number of successful extensions: 122
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 6
length of query: 58
length of database: 14,973,337
effective HSP length: 30
effective length of query: 28
effective length of database: 13,095,997
effective search space: 366687916
effective search space used: 366687916
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)