BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy455
(58 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24040|BGB_DROME Protein big brother OS=Drosophila melanogaster GN=Bgb PE=2 SV=3
Length = 213
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 48/50 (96%)
Query: 1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
MNGVCVR+RGW+DLERLDGVGCLEYDE +AM EDA+LRDQI+RYNQRLR+
Sbjct: 127 MNGVCVRFRGWIDLERLDGVGCLEYDERRAMHEDAILRDQIDRYNQRLRE 176
>sp|Q24039|BRO_DROME Protein brother OS=Drosophila melanogaster GN=Bro PE=2 SV=2
Length = 213
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 44/51 (86%)
Query: 1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDA 51
MNGVCVR+RGW+DL+RLDG CLE+DE++A EDA L++QI+ YNQR+ ++
Sbjct: 134 MNGVCVRFRGWVDLDRLDGAACLEFDEQRAQQEDAQLQEQIQSYNQRMAES 184
>sp|Q13951|PEBB_HUMAN Core-binding factor subunit beta OS=Homo sapiens GN=CBFB PE=1 SV=2
Length = 182
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
+NGVCV W+GW+DL+RLDG+GCLE+DEE+A EDA+ + E +R R+
Sbjct: 103 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 152
>sp|Q08024|PEBB_MOUSE Core-binding factor subunit beta OS=Mus musculus GN=Cbfb PE=1 SV=1
Length = 187
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
+NGVCV W+GW+DL RLDG+GCLE+DEE+A EDA+ + E +R R+
Sbjct: 103 LNGVCVIWKGWIDLHRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 152
>sp|A6TB39|CMOA_KLEP7 tRNA (cmo5U34)-methyltransferase OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=cmoA PE=3
SV=1
Length = 247
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRQA--GFEH 225
>sp|B5XPZ6|CMOA_KLEP3 tRNA (cmo5U34)-methyltransferase OS=Klebsiella pneumoniae (strain
342) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRQA--GFEH 225
>sp|Q2NTJ7|CMOA_SODGM tRNA (cmo5U34)-methyltransferase OS=Sodalis glossinidius (strain
morsitans) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLG 54
D +R +G LE ++++M+E+ ML D +E + QRL +A G
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDTVEVHKQRLVEAGFG 224
>sp|A7MEB1|CMOA_CROS8 tRNA (cmo5U34)-methyltransferase OS=Cronobacter sakazakii (strain
ATCC BAA-894) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRKA--GFEH 225
>sp|A9MUB4|CMOA_SALPB tRNA (cmo5U34)-methyltransferase OS=Salmonella paratyphi B (strain
ATCC BAA-1250 / SPB7) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKSRLRKA--GFEH 225
>sp|C0Q2E4|CMOA_SALPC tRNA (cmo5U34)-methyltransferase OS=Salmonella paratyphi C (strain
RKS4594) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKSRLRKA--GFEH 225
>sp|Q57N92|CMOA_SALCH tRNA (cmo5U34)-methyltransferase OS=Salmonella choleraesuis (strain
SC-B67) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKSRLRKA--GFEH 225
>sp|Q7CQC4|CMOA_SALTY tRNA (cmo5U34)-methyltransferase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=cmoA PE=1 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRQA--GFEH 225
>sp|Q8XFX8|CMOA_SALTI tRNA (cmo5U34)-methyltransferase OS=Salmonella typhi GN=cmoA PE=3
SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRQA--GFEH 225
>sp|B5BH50|CMOA_SALPK tRNA (cmo5U34)-methyltransferase OS=Salmonella paratyphi A (strain
AKU_12601) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRQA--GFEH 225
>sp|Q5PMY8|CMOA_SALPA tRNA (cmo5U34)-methyltransferase OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRQA--GFEH 225
>sp|B5FSM6|CMOA_SALDC tRNA (cmo5U34)-methyltransferase OS=Salmonella dublin (strain
CT_02021853) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRQA--GFEH 225
>sp|B5F3I5|CMOA_SALA4 tRNA (cmo5U34)-methyltransferase OS=Salmonella agona (strain SL483)
GN=cmoA PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRQA--GFEH 225
>sp|B4TYS8|CMOA_SALSV tRNA (cmo5U34)-methyltransferase OS=Salmonella schwarzengrund
(strain CVM19633) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRKA--GFEH 225
>sp|B4SVF5|CMOA_SALNS tRNA (cmo5U34)-methyltransferase OS=Salmonella newport (strain
SL254) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRKA--GFEH 225
>sp|B4T803|CMOA_SALHS tRNA (cmo5U34)-methyltransferase OS=Salmonella heidelberg (strain
SL476) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRKA--GFEH 225
>sp|B5R8D2|CMOA_SALG2 tRNA (cmo5U34)-methyltransferase OS=Salmonella gallinarum (strain
287/91 / NCTC 13346) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRKA--GFEH 225
>sp|B5R146|CMOA_SALEP tRNA (cmo5U34)-methyltransferase OS=Salmonella enteritidis PT4
(strain P125109) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRKA--GFEH 225
>sp|B2VJC2|CMOA_ERWT9 tRNA (cmo5U34)-methyltransferase OS=Erwinia tasmaniensis (strain
DSM 17950 / Et1/99) GN=cmoA PE=3 SV=1
Length = 246
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + QRL+ A GF++
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKQRLKLA--GFQH 225
>sp|A9MNC8|CMOA_SALAR tRNA (cmo5U34)-methyltransferase OS=Salmonella arizonae (strain
ATCC BAA-731 / CDC346-86 / RSK2980) GN=cmoA PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RLR A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRKA--GFEH 225
>sp|A8GFJ7|CMOA_SERP5 tRNA (cmo5U34)-methyltransferase OS=Serratia proteamaculans (strain
568) GN=cmoA PE=3 SV=1
Length = 247
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D + + RL+ A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVAAHKTRLKQA--GFEH 225
>sp|Q2W2S4|RIMO_MAGSA Ribosomal protein S12 methylthiotransferase RimO
OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
700264) GN=rimO PE=3 SV=1
Length = 448
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 10 GWLDLERLDGVGCLEYDEEKAMIEDAMLRDQI-----ERYNQRLRDA 51
GWL+ +LD VGC +Y++ K +A DQ+ E +QR +A
Sbjct: 318 GWLEEAQLDRVGCFKYEDVKGAPANA-FADQVDEDVKEERHQRFMEA 363
>sp|A1B3K8|RIMO_PARDP Ribosomal protein S12 methylthiotransferase RimO OS=Paracoccus
denitrificans (strain Pd 1222) GN=rimO PE=3 SV=1
Length = 463
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 11 WLDLERLDGVGCLEYDEEKAM--------IEDAMLRDQIERYNQR 47
WLD +LD VGC +Y+ K + D + +D+ +R+ Q+
Sbjct: 344 WLDEAQLDRVGCFQYENVKGARANDLPDHVPDDVKQDRWDRFMQK 388
>sp|Q9Z277|BAZ1B_MOUSE Tyrosine-protein kinase BAZ1B OS=Mus musculus GN=Baz1b PE=1 SV=2
Length = 1479
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 14 LERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDA 51
L+ D E DEEK M+E+A + +E++ +R+A
Sbjct: 1122 LQSEDSTKSEEVDEEKKMVEEAKVASALEKWKTAIREA 1159
>sp|Q9UIG0|BAZ1B_HUMAN Tyrosine-protein kinase BAZ1B OS=Homo sapiens GN=BAZ1B PE=1 SV=2
Length = 1483
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 14 LERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDA 51
L+ D E DEEK M+E+A + +E++ +R+A
Sbjct: 1122 LQSEDSAKTEEVDEEKKMVEEAKVASALEKWKTAIREA 1159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.144 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,508,194
Number of Sequences: 539616
Number of extensions: 661116
Number of successful extensions: 2706
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2678
Number of HSP's gapped (non-prelim): 31
length of query: 58
length of database: 191,569,459
effective HSP length: 31
effective length of query: 27
effective length of database: 174,841,363
effective search space: 4720716801
effective search space used: 4720716801
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)