Query psy455
Match_columns 58
No_of_seqs 36 out of 38
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 19:55:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02312 CBF_beta: Core bindin 100.0 5.1E-31 1.1E-35 181.6 2.0 56 1-56 98-153 (169)
2 KOG4785|consensus 99.9 2.4E-26 5.1E-31 159.4 4.2 56 1-56 98-153 (177)
3 PRK04570 cell division protein 82.7 0.69 1.5E-05 34.1 1.3 31 23-57 204-234 (243)
4 PRK13711 conjugal transfer pro 58.5 3.9 8.4E-05 27.0 0.4 12 5-16 3-14 (113)
5 KOG3850|consensus 56.5 16 0.00035 29.2 3.5 25 28-52 94-118 (455)
6 cd04684 Nudix_Hydrolase_25 Con 52.0 12 0.00026 21.7 1.7 28 16-47 28-55 (128)
7 KOG4747|consensus 47.0 3.6 7.9E-05 28.4 -1.2 41 2-46 95-136 (150)
8 COG3115 ZipA Cell division pro 46.3 19 0.00042 27.6 2.5 29 23-55 295-323 (324)
9 cd05838 WHSC1_related The PWWP 44.9 71 0.0015 19.4 4.5 48 2-49 39-93 (95)
10 PF10023 DUF2265: Predicted am 44.3 14 0.00031 28.1 1.5 23 5-40 109-131 (337)
11 PF13298 LigD_N: DNA polymeras 42.6 13 0.00027 24.0 0.9 9 1-9 16-24 (105)
12 PF04508 Pox_A_type_inc: Viral 41.4 22 0.00047 17.7 1.4 15 40-54 2-16 (23)
13 PF10267 Tmemb_cc2: Predicted 39.2 47 0.001 25.7 3.6 27 28-54 58-84 (395)
14 PF06526 DUF1107: Protein of u 38.1 48 0.001 19.9 2.8 35 17-51 26-63 (64)
15 PF00855 PWWP: PWWP domain; I 36.4 81 0.0017 17.6 4.6 44 2-45 35-84 (86)
16 cd04691 Nudix_Hydrolase_32 Mem 34.7 36 0.00078 20.2 1.9 28 16-47 30-57 (117)
17 cd04671 Nudix_Hydrolase_13 Mem 33.5 37 0.00079 20.7 1.9 31 14-48 27-57 (123)
18 PRK15472 nucleoside triphospha 33.3 34 0.00073 20.8 1.7 27 17-47 35-61 (141)
19 cd03427 MTH1 MutT homolog-1 (M 33.3 37 0.0008 20.2 1.8 27 16-46 29-55 (137)
20 PRK00269 zipA cell division pr 32.8 37 0.0008 25.6 2.1 28 25-56 262-289 (293)
21 TIGR01702 CO_DH_cata carbon-mo 30.8 38 0.00082 27.8 2.0 34 13-47 352-387 (621)
22 cd03430 GDPMH GDP-mannose glyc 30.8 46 0.001 20.8 2.0 28 17-48 42-69 (144)
23 cd04680 Nudix_Hydrolase_21 Mem 30.5 45 0.00097 19.1 1.8 29 17-49 27-55 (120)
24 COG0494 MutT NTP pyrophosphohy 29.8 38 0.00083 18.6 1.4 27 21-49 43-69 (161)
25 cd04690 Nudix_Hydrolase_31 Mem 28.5 51 0.0011 19.0 1.8 29 17-49 27-55 (118)
26 cd00024 CHROMO Chromatin organ 28.2 34 0.00073 17.6 0.9 10 4-13 22-31 (55)
27 cd04681 Nudix_Hydrolase_22 Mem 27.7 58 0.0013 19.1 2.0 29 16-48 30-58 (130)
28 cd04700 DR1025_like DR1025 fro 27.5 48 0.001 20.5 1.7 30 16-49 42-71 (142)
29 cd04677 Nudix_Hydrolase_18 Mem 27.4 1.2E+02 0.0025 17.7 3.3 29 16-48 33-61 (132)
30 PF04380 BMFP: Membrane fusoge 27.3 83 0.0018 18.7 2.7 36 17-54 44-79 (79)
31 cd01916 ACS_1 Acetyl-CoA synth 27.3 62 0.0013 27.0 2.7 28 16-47 321-348 (731)
32 KOG3039|consensus 26.4 59 0.0013 24.9 2.3 29 25-53 88-116 (303)
33 cd04689 Nudix_Hydrolase_30 Mem 26.2 54 0.0012 19.3 1.7 28 17-48 27-54 (125)
34 cd03674 Nudix_Hydrolase_1 Memb 25.8 58 0.0013 19.9 1.8 30 15-48 28-57 (138)
35 cd01915 CODH Carbon monoxide d 25.7 64 0.0014 26.4 2.5 35 13-47 347-382 (613)
36 PF01899 MNHE: Na+/H+ ion anti 25.4 1.2E+02 0.0025 19.5 3.2 14 16-29 111-124 (156)
37 COG1422 Predicted membrane pro 25.4 61 0.0013 23.3 2.1 18 38-55 71-88 (201)
38 PF07889 DUF1664: Protein of u 24.9 35 0.00075 22.6 0.7 7 5-11 22-28 (126)
39 PF13206 VSG_B: Trypanosomal V 24.7 1E+02 0.0022 21.3 3.1 22 2-23 300-321 (351)
40 PF04802 SMK-1: Component of I 24.2 26 0.00057 24.3 0.1 13 19-31 57-69 (193)
41 PF02009 Rifin_STEVOR: Rifin/s 23.7 82 0.0018 23.4 2.6 11 38-48 49-59 (299)
42 COG2980 RlpB Rare lipoprotein 23.5 1.2E+02 0.0026 21.5 3.2 29 24-52 133-161 (178)
43 cd04673 Nudix_Hydrolase_15 Mem 23.4 64 0.0014 18.4 1.6 27 17-47 29-55 (122)
44 PF12344 UvrB: Ultra-violet re 22.8 89 0.0019 17.5 2.1 12 36-47 9-20 (44)
45 smart00298 CHROMO Chromatin or 22.6 50 0.0011 16.8 0.9 11 4-14 20-30 (55)
46 cd04682 Nudix_Hydrolase_23 Mem 22.3 79 0.0017 18.6 1.9 29 16-48 32-60 (122)
47 PF05644 Miff: Mitochondrial a 22.2 1.2E+02 0.0026 22.0 3.1 29 26-54 189-217 (246)
48 cd04664 Nudix_Hydrolase_7 Memb 21.4 79 0.0017 18.7 1.8 28 17-48 32-59 (129)
49 cd04678 Nudix_Hydrolase_19 Mem 21.4 75 0.0016 18.7 1.7 28 17-48 32-59 (129)
50 KOG1602|consensus 21.0 51 0.0011 24.8 1.0 16 1-18 124-139 (271)
51 PRK14839 undecaprenyl pyrophos 20.7 54 0.0012 23.8 1.1 15 2-18 95-109 (239)
52 PRK12651 putative monovalent c 20.7 1.6E+02 0.0035 19.3 3.3 14 16-29 112-125 (158)
53 TIGR00055 uppS undecaprenyl di 20.7 54 0.0012 23.4 1.1 15 2-18 85-99 (226)
54 cd07469 CRD_TK_ROR_related Cys 20.5 44 0.00094 22.8 0.6 33 2-34 2-34 (147)
No 1
>PF02312 CBF_beta: Core binding factor beta subunit; InterPro: IPR003417 Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including Murine leukemia virus, Polyomavirus enhancer, T-cell receptor enhancers etc. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold []. Also included in this family are the Drosophila melanogaster brother and big brother proteins, which regulate the DNA-binding properties of Runt.; GO: 0003713 transcription coactivator activity, 0005634 nucleus; PDB: 2JHB_A 1IO4_D 1ILF_A 1CL3_A 1H9D_B 1E50_H.
Probab=99.96 E-value=5.1e-31 Score=181.61 Aligned_cols=56 Identities=71% Similarity=1.316 Sum_probs=36.7
Q ss_pred CceeEEeeeeeeeceecCCceeeeechhHhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy455 1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFR 56 (58)
Q Consensus 1 lNgVcV~wrG~~dl~rldG~~~Lefdee~A~~ED~~~re~~e~~~~R~refEdr~~ 56 (58)
||||||+|||||||++|||+|||+||+++|++||++++++|++|++|++|||++.|
T Consensus 98 lNGVCV~~rGwidlerLdG~g~LefDeerA~~Ed~~~~~~~e~~~~r~refee~~r 153 (169)
T PF02312_consen 98 LNGVCVRWRGWIDLERLDGVGCLEFDEERAQIEDALLREQFEQYNQRIREFEERQR 153 (169)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEE-HHHHHHHHHHCT------------------
T ss_pred EeeEEEEEEEEeehhhccCcceeeeCHHHHHHHHHHHHHHHHHHHhhccchhhccc
Confidence 79999999999999999999999999999999999999999999999999999986
No 2
>KOG4785|consensus
Probab=99.92 E-value=2.4e-26 Score=159.40 Aligned_cols=56 Identities=54% Similarity=1.002 Sum_probs=55.0
Q ss_pred CceeEEeeeeeeeceecCCceeeeechhHhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy455 1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFR 56 (58)
Q Consensus 1 lNgVcV~wrG~~dl~rldG~~~Lefdee~A~~ED~~~re~~e~~~~R~refEdr~~ 56 (58)
||||||+|+||||+++|||+|||+||+.+|++||++++++|+.+++|+++|||+.|
T Consensus 98 ~NGvcV~~~GwidlErLdG~gclefde~ra~~eDai~~~~f~~~~~r~refed~~r 153 (177)
T KOG4785|consen 98 LNGVCVIWKGWIDLERLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDR 153 (177)
T ss_pred eeeeEEEEEeeechhhccCccceehhHHHHHhHHHHHHHHHHHHHhhcccccccch
Confidence 79999999999999999999999999999999999999999999999999999876
No 3
>PRK04570 cell division protein ZipA; Provisional
Probab=82.73 E-value=0.69 Score=34.08 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=24.8
Q ss_pred eeechhHhhhHHHHHHHHHHHHHHHHHhhhhhccC
Q psy455 23 LEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57 (58)
Q Consensus 23 Lefdee~A~~ED~~~re~~e~~~~R~refEdr~~~ 57 (58)
..+|+++.. +..|.++.|++|+|+||.|.+.
T Consensus 204 ~VLDe~R~~----lT~Q~iehyRqrIreyeRr~~~ 234 (243)
T PRK04570 204 VVLDDSRNA----LGRQRIAHIRDELRAYDRQHQA 234 (243)
T ss_pred EEecCCccc----CCHHHHHHHHHHHHHHHHhhcC
Confidence 346776654 5789999999999999988763
No 4
>PRK13711 conjugal transfer protein TrbJ; Provisional
Probab=58.54 E-value=3.9 Score=27.03 Aligned_cols=12 Identities=50% Similarity=1.209 Sum_probs=9.8
Q ss_pred EEeeeeeeecee
Q psy455 5 CVRWRGWLDLER 16 (58)
Q Consensus 5 cV~wrG~~dl~r 16 (58)
+|.|||||-.-|
T Consensus 3 pvlwrgwipfcr 14 (113)
T PRK13711 3 PVLWRGWIPFCR 14 (113)
T ss_pred ceeeccccceeE
Confidence 689999997654
No 5
>KOG3850|consensus
Probab=56.50 E-value=16 Score=29.21 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=23.0
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHhhh
Q psy455 28 EKAMIEDAMLRDQIERYNQRLRDAY 52 (58)
Q Consensus 28 e~A~~ED~~~re~~e~~~~R~refE 52 (58)
+++.++=++++..+++|.+|++++|
T Consensus 94 qksahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 94 QKSAHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888999999999999999999
No 6
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=52.04 E-value=12 Score=21.66 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=21.7
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYNQR 47 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~~R 47 (58)
-+|| |.++.+| ..+++..||..|++.=.
T Consensus 28 ~lPg-G~ve~gE---~~~~aa~RE~~EEtGl~ 55 (128)
T cd04684 28 DLPG-GGIEPGE---SPEEALHREVLEETGLT 55 (128)
T ss_pred ECCC-cccCCCC---CHHHHHHHHHHHHhCcE
Confidence 4566 7787776 57899999999998743
No 7
>KOG4747|consensus
Probab=47.02 E-value=3.6 Score=28.44 Aligned_cols=41 Identities=29% Similarity=0.637 Sum_probs=35.2
Q ss_pred ceeEEeeeeeeeceecCC-ceeeeechhHhhhHHHHHHHHHHHHHH
Q psy455 2 NGVCVRWRGWLDLERLDG-VGCLEYDEEKAMIEDAMLRDQIERYNQ 46 (58)
Q Consensus 2 NgVcV~wrG~~dl~rldG-~~~Lefdee~A~~ED~~~re~~e~~~~ 46 (58)
..+||.++-+-+..-.+| ++|| +.-++|--.++..++.+++
T Consensus 95 k~~c~~~~~~~~~~n~egcvr~l----~~v~ie~~~lkkkL~~~f~ 136 (150)
T KOG4747|consen 95 KKVCVGFNEFCEAGNIEGCVRCL----QQVKIEYSLLKKKLETLFQ 136 (150)
T ss_pred HHHHHHHHHHHhhccchhHhhch----HHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999 8888 6677888889999998887
No 8
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=46.27 E-value=19 Score=27.65 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=23.3
Q ss_pred eeechhHhhhHHHHHHHHHHHHHHHHHhhhhhc
Q psy455 23 LEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGF 55 (58)
Q Consensus 23 Lefdee~A~~ED~~~re~~e~~~~R~refEdr~ 55 (58)
+..|++++. ...++++.|++|+||++++.
T Consensus 295 vVLddqr~~----mt~q~l~aY~drIre~~~~~ 323 (324)
T COG3115 295 VVLDDQRRM----MTPQKLEAYRDRIREVKRAN 323 (324)
T ss_pred eeehhhhhh----cCHHHHHHHHHHHHHHHhcc
Confidence 347777765 57789999999999999863
No 9
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=44.86 E-value=71 Score=19.44 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=29.4
Q ss_pred ceeEEeeeeeeeceecCCceeeeechhHhh-------hHHHHHHHHHHHHHHHHH
Q psy455 2 NGVCVRWRGWLDLERLDGVGCLEYDEEKAM-------IEDAMLRDQIERYNQRLR 49 (58)
Q Consensus 2 NgVcV~wrG~~dl~rldG~~~Lefdee~A~-------~ED~~~re~~e~~~~R~r 49 (58)
+.|||.|=|.-|--=++-.....|.+..+. .-....+++++++.....
T Consensus 39 ~~~~V~Ffgs~~y~Wv~~~~l~pf~e~~~~~~~~~~~~~~~~f~~AleEA~~~~~ 93 (95)
T cd05838 39 GEFCVMFFGTHDYYWVHRGRVFPYQEGDKGFKEQTKSYLAKRFRKALEEASLAFK 93 (95)
T ss_pred CeEEEEEeCCCCEEEeccccccchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 468999866544444445555566543332 234577888888877654
No 10
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=44.29 E-value=14 Score=28.08 Aligned_cols=23 Identities=52% Similarity=0.900 Sum_probs=19.0
Q ss_pred EEeeeeeeeceecCCceeeeechhHhhhHHHHHHHH
Q psy455 5 CVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQ 40 (58)
Q Consensus 5 cV~wrG~~dl~rldG~~~Lefdee~A~~ED~~~re~ 40 (58)
||..||| ||+..|+.|.+.++++
T Consensus 109 cv~YrGy-------------F~~~~A~~~a~~L~~~ 131 (337)
T PF10023_consen 109 CVPYRGY-------------FDEADARAEAAELRAQ 131 (337)
T ss_pred cccccCc-------------CCHHHHHHHHHHHHHc
Confidence 7788885 8999999999888764
No 11
>PF13298 LigD_N: DNA polymerase Ligase (LigD); PDB: 3TA5_A 3P4H_A 3TA7_A 3N9B_A 3N9D_A 2LJ6_A 3P43_A.
Probab=42.65 E-value=13 Score=23.97 Aligned_cols=9 Identities=33% Similarity=0.719 Sum_probs=7.3
Q ss_pred CceeEEeee
Q psy455 1 MNGVCVRWR 9 (58)
Q Consensus 1 lNgVcV~wr 9 (58)
++|||++|.
T Consensus 16 ~~gvl~SWa 24 (105)
T PF13298_consen 16 DDGVLKSWA 24 (105)
T ss_dssp ETTEEEEEE
T ss_pred cCCeEEeeE
Confidence 478999996
No 12
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=41.38 E-value=22 Score=17.74 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhhh
Q psy455 40 QIERYNQRLRDAYLG 54 (58)
Q Consensus 40 ~~e~~~~R~refEdr 54 (58)
.|++.+.||+++|.+
T Consensus 2 E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 2 EMNRLRNRISDLERQ 16 (23)
T ss_pred hHHHHHHHHHHHHHH
Confidence 477888999988864
No 13
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=39.18 E-value=47 Score=25.71 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=23.1
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy455 28 EKAMIEDAMLRDQIERYNQRLRDAYLG 54 (58)
Q Consensus 28 e~A~~ED~~~re~~e~~~~R~refEdr 54 (58)
+++.++=++++..+++|.+|++|.|..
T Consensus 58 qksa~~i~~lqkkL~~y~~~l~ele~~ 84 (395)
T PF10267_consen 58 QKSAQTIAQLQKKLEQYHKRLKELEQG 84 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456677888999999999999999864
No 14
>PF06526 DUF1107: Protein of unknown function (DUF1107); InterPro: IPR009491 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2JRO_A.
Probab=38.08 E-value=48 Score=19.90 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=26.3
Q ss_pred cCCceeeeechhHh---hhHHHHHHHHHHHHHHHHHhh
Q psy455 17 LDGVGCLEYDEEKA---MIEDAMLRDQIERYNQRLRDA 51 (58)
Q Consensus 17 ldG~~~Lefdee~A---~~ED~~~re~~e~~~~R~ref 51 (58)
.+|+|.+|||..+- +..|......|.|-|+-+..+
T Consensus 26 I~g~G~feFd~Gkillp~~~~~~~~~~~~EiN~~I~~L 63 (64)
T PF06526_consen 26 IKGIGAFEFDNGKILLPKKADKRHLSVMSEINQEIRRL 63 (64)
T ss_dssp ETTTEEEEEETTEE---SS--HHHHHHHHHHHHHHHHH
T ss_pred EEecccEEEcCCEEeCCccccHHHHHHHHHHHHHHHhc
Confidence 57999999998765 456778888888888877643
No 15
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=36.40 E-value=81 Score=17.65 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=25.6
Q ss_pred ceeEEeeeeeeeceecCCceeeeechhHhhhHH------HHHHHHHHHHH
Q psy455 2 NGVCVRWRGWLDLERLDGVGCLEYDEEKAMIED------AMLRDQIERYN 45 (58)
Q Consensus 2 NgVcV~wrG~~dl~rldG~~~Lefdee~A~~ED------~~~re~~e~~~ 45 (58)
+.+||.|=|--+..-++...++.|++....... ..++++|++++
T Consensus 35 ~~~~V~Ffg~~~~~wv~~~~i~~f~~~~~~~~~~~~~k~~~~~~Ai~eA~ 84 (86)
T PF00855_consen 35 GHVLVRFFGDNDYAWVKPSNIKPFSEFKEKLKKKKKKKRKSFRKAIEEAE 84 (86)
T ss_dssp TEEEEEETTTTEEEEEEGGGEEECCHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CEEEEEecCCCCEEEECHHHhhChhhhHHHHHHhhccchHHHHHHHHHHH
Confidence 357888877555555666667778755544333 24445555443
No 16
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=34.73 E-value=36 Score=20.23 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=21.2
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYNQR 47 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~~R 47 (58)
-+|| |.++.+|. .+++..||..|+++=+
T Consensus 30 ~lPg-G~ve~gE~---~~~aa~REl~EEtGl~ 57 (117)
T cd04691 30 NIPG-GHIEAGES---QEEALLREVQEELGVD 57 (117)
T ss_pred ECcc-eeecCCCC---HHHHHHHHHHHHHCCC
Confidence 3566 77877663 5889999999998744
No 17
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=33.46 E-value=37 Score=20.70 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=23.6
Q ss_pred ceecCCceeeeechhHhhhHHHHHHHHHHHHHHHH
Q psy455 14 LERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRL 48 (58)
Q Consensus 14 l~rldG~~~Lefdee~A~~ED~~~re~~e~~~~R~ 48 (58)
.=-+|| |.++.+|- .+++..|+..|+++=.+
T Consensus 27 ~w~lPg-G~ve~gEt---~~~aa~REl~EEtG~~~ 57 (123)
T cd04671 27 KWYLPA-GRMEPGET---IEEAVKREVKEETGLDC 57 (123)
T ss_pred eEECce-eecCCCCC---HHHHHHHHHHHHHCCee
Confidence 345787 88887663 58899999999987544
No 18
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=33.27 E-value=34 Score=20.81 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=21.5
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYNQR 47 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~~R 47 (58)
+|| |.++-+|. .+++..||..|++.=.
T Consensus 35 lPg-G~ve~gEs---~~~aa~REl~EEtGl~ 61 (141)
T PRK15472 35 LSG-GGVEPGER---IEEALRREIREELGEQ 61 (141)
T ss_pred CCc-ccCCCCCC---HHHHHHHHHHHHHCCc
Confidence 567 77888774 6789999999999844
No 19
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=33.26 E-value=37 Score=20.19 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=20.9
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYNQ 46 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~~ 46 (58)
.+|| |.++.+| -.+++..||..|++.=
T Consensus 29 ~~Pg-G~ve~gE---s~~~aa~RE~~EEtGl 55 (137)
T cd03427 29 NGPG-GKVEPGE---TPEECAIRELKEETGL 55 (137)
T ss_pred eCCc-eeCCCCC---CHHHHHHHHHHHhhCe
Confidence 5676 7777776 4678999999999863
No 20
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=32.78 E-value=37 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=21.4
Q ss_pred echhHhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy455 25 YDEEKAMIEDAMLRDQIERYNQRLRDAYLGFR 56 (58)
Q Consensus 25 fdee~A~~ED~~~re~~e~~~~R~refEdr~~ 56 (58)
.|+++.- +..+.++.|++|+++||.+.+
T Consensus 262 lDD~R~~----LT~q~ie~yRqrI~e~err~l 289 (293)
T PRK00269 262 KDDQRSV----LTAQTIEHYRQRIVEFERRAL 289 (293)
T ss_pred ECCCCCc----CCHHHHHHHHHHHHHHHHHhh
Confidence 4555544 467889999999999998865
No 21
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit. This model represents the carbon-monoxide dehydrogenase catalytic subunit. This protein is related to prismane (also called hybrid cluster protein), a complex whose activity is not yet fully described; the two share similar sets of ligands to unusual metal-containing clusters.
Probab=30.75 E-value=38 Score=27.84 Aligned_cols=34 Identities=35% Similarity=0.631 Sum_probs=26.2
Q ss_pred eceecCCceeeeechhHhhhH--HHHHHHHHHHHHHH
Q psy455 13 DLERLDGVGCLEYDEEKAMIE--DAMLRDQIERYNQR 47 (58)
Q Consensus 13 dl~rldG~~~Lefdee~A~~E--D~~~re~~e~~~~R 47 (58)
+.-++||+..++||++.|. | ..+.+.++|.+.+|
T Consensus 352 ~~a~~pGa~hi~~d~~~a~-e~A~~ii~~Aie~f~~r 387 (621)
T TIGR01702 352 DNAKIPGADHIPYDPEKAE-ETAKTIIRMAIEAFKER 387 (621)
T ss_pred cccCCCCCeeeCCCcchHH-HHHHHHHHHHHhhcccc
Confidence 6778999999999999863 3 46677777766554
No 22
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=30.75 E-value=46 Score=20.80 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=21.4
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYNQRL 48 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~~R~ 48 (58)
+|| |.++.+| -.+++..||..|+.+=.+
T Consensus 42 lPG-G~ve~gE---s~~~aa~RE~~EE~Gl~v 69 (144)
T cd03430 42 VPG-GRIRKNE---TLTEAFERIAKDELGLEF 69 (144)
T ss_pred CCC-ceecCCC---CHHHHHHHHHHHHHCCCc
Confidence 666 7777766 678899999999987433
No 23
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=30.53 E-value=45 Score=19.14 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=22.1
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLR 49 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~~R~r 49 (58)
+|| |.++.++ -.+++..|+..|+++=...
T Consensus 27 ~Pg-G~ve~gE---t~~~aa~REl~EEtG~~~~ 55 (120)
T cd04680 27 LPG-GGLERGE---TFAEAARRELLEELGIRLA 55 (120)
T ss_pred CCC-CcCCCCC---CHHHHHHHHHHHHHCCccc
Confidence 676 7777776 3689999999999875543
No 24
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=29.85 E-value=38 Score=18.60 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=18.2
Q ss_pred eeeeechhHhhhHHHHHHHHHHHHHHHHH
Q psy455 21 GCLEYDEEKAMIEDAMLRDQIERYNQRLR 49 (58)
Q Consensus 21 ~~Lefdee~A~~ED~~~re~~e~~~~R~r 49 (58)
|.++-++.. .+++..||..|+++=...
T Consensus 43 G~ve~~e~~--~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 43 GKVEPGEEL--PEEAAARELEEETGLRVK 69 (161)
T ss_pred cccCCCCch--HHHHHHHHHHHHhCCeee
Confidence 445555555 344999999999875443
No 25
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=28.47 E-value=51 Score=18.98 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=21.2
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLR 49 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~~R~r 49 (58)
+|| |.++-++ ..+++.+|+..|+++=...
T Consensus 27 ~Pg-G~ve~~E---s~~~aa~REl~EEtGl~~~ 55 (118)
T cd04690 27 LPG-GKIEAGE---TPLQALIRELSEELGLDLD 55 (118)
T ss_pred CCC-CccCCCC---CHHHHHHHHHHHHHCCccC
Confidence 566 6666655 4689999999999875443
No 26
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=28.20 E-value=34 Score=17.57 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=7.8
Q ss_pred eEEeeeeeee
Q psy455 4 VCVRWRGWLD 13 (58)
Q Consensus 4 VcV~wrG~~d 13 (58)
+.|.|+||-.
T Consensus 22 y~VkW~g~~~ 31 (55)
T cd00024 22 YLVKWKGYSY 31 (55)
T ss_pred EEEEECCCCC
Confidence 5799999753
No 27
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=27.74 E-value=58 Score=19.13 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=21.8
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRL 48 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~~R~ 48 (58)
-+|| |.++-+| -.+++..|+..|+++=.+
T Consensus 30 ~~Pg-G~ve~gE---s~~~aa~RE~~EEtGl~~ 58 (130)
T cd04681 30 DLPG-GFVDPGE---SAEEALIREIREETGLKV 58 (130)
T ss_pred eCCc-eeecCCC---CHHHHHHHHHHHHhCCcc
Confidence 3576 7787776 378899999999987443
No 28
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=27.52 E-value=48 Score=20.53 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=22.3
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLR 49 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~~R~r 49 (58)
-+|| |.++-+| -.+++..||..|+++=++.
T Consensus 42 ~lPg-G~ve~gE---t~~~aa~REl~EEtGl~~~ 71 (142)
T cd04700 42 HIPS-GAVEDGE---FPQDAAVREACEETGLRVR 71 (142)
T ss_pred ECCc-eecCCCC---CHHHHHHHHHHHhhCceee
Confidence 4565 7777666 3788999999999885544
No 29
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=27.40 E-value=1.2e+02 Score=17.73 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=21.5
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRL 48 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~~R~ 48 (58)
-+|| |.++.+|. .+++..|+..|++.=.+
T Consensus 33 ~~Pg-G~v~~gEt---~~~aa~REl~EE~Gi~~ 61 (132)
T cd04677 33 GLPG-GAMELGES---LEETARRELKEETGLEV 61 (132)
T ss_pred ECCe-eecCCCCC---HHHHHHHHHHHHhCCee
Confidence 4566 67766663 78899999999987443
No 30
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=27.35 E-value=83 Score=18.72 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=21.4
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLG 54 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~~R~refEdr 54 (58)
||=+..=|||.+++.. ..+|+.++..-.|+.++|.+
T Consensus 44 ldlVtREEFd~q~~~L--~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 44 LDLVTREEFDAQKAVL--ARTREKLEALEARLAALEAQ 79 (79)
T ss_pred CCCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 3334444677766653 33566677777777777653
No 31
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=27.34 E-value=62 Score=27.01 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=23.2
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYNQR 47 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~~R 47 (58)
.+||+ +.||++.|.. .+.+.+++.+..|
T Consensus 321 glpga--~~~~~~k~~e--~~v~~Ai~~~~~r 348 (731)
T cd01916 321 KIPGV--LILDPEKVGE--VAVEVAMAVKPKR 348 (731)
T ss_pred CCCce--EecChhhhhH--HHHHHHHHhhhhh
Confidence 47888 9999999964 8888899888765
No 32
>KOG3039|consensus
Probab=26.43 E-value=59 Score=24.87 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=18.8
Q ss_pred echhHhhhHHHHHHHHHHHHHHHHHhhhh
Q psy455 25 YDEEKAMIEDAMLRDQIERYNQRLRDAYL 53 (58)
Q Consensus 25 fdee~A~~ED~~~re~~e~~~~R~refEd 53 (58)
|..++-+.||...+.++-|...|+.+|-.
T Consensus 88 yekqrr~eed~e~qra~~q~~~~~~eF~~ 116 (303)
T KOG3039|consen 88 YEKQRRAEEDKEEQRAMSQKARRLDEFDQ 116 (303)
T ss_pred HHHHHHhhhhHHHHHHHhhhHHHHHHHHh
Confidence 34445566777777777777777776643
No 33
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=26.17 E-value=54 Score=19.27 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=21.1
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYNQRL 48 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~~R~ 48 (58)
+|| |.++.+| -.+++..||..|+++=..
T Consensus 27 lPG-G~ve~gE---t~~~aa~REl~EEtGl~~ 54 (125)
T cd04689 27 LPG-GHVEPGE---TAENALRRELQEELGVAV 54 (125)
T ss_pred CCC-CcCCCCC---CHHHHHHHHHHHHhCcee
Confidence 676 6676665 478899999999987443
No 34
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=25.84 E-value=58 Score=19.89 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=23.1
Q ss_pred eecCCceeeeechhHhhhHHHHHHHHHHHHHHHH
Q psy455 15 ERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRL 48 (58)
Q Consensus 15 ~rldG~~~Lefdee~A~~ED~~~re~~e~~~~R~ 48 (58)
=-+|| |.++-+|. .+++..|+..|+++=.+
T Consensus 28 w~lPg-G~ve~gE~---~~~aa~REl~EEtGl~~ 57 (138)
T cd03674 28 WLQPG-GHIDPDES---LLEAALRELREETGIEL 57 (138)
T ss_pred EECCc-eecCCCCC---HHHHHHHHHHHHHCCCc
Confidence 35676 88887764 78899999999987543
No 35
>cd01915 CODH Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Probab=25.73 E-value=64 Score=26.45 Aligned_cols=35 Identities=26% Similarity=0.567 Sum_probs=26.2
Q ss_pred eceecCCceeeeechhHhh-hHHHHHHHHHHHHHHH
Q psy455 13 DLERLDGVGCLEYDEEKAM-IEDAMLRDQIERYNQR 47 (58)
Q Consensus 13 dl~rldG~~~Lefdee~A~-~ED~~~re~~e~~~~R 47 (58)
+.-++||+-.++||++.|. .=..+.+.+++.+.+|
T Consensus 347 ~~a~~pGa~hi~~~~~~a~e~A~~ii~~Aie~f~~R 382 (613)
T cd01915 347 DVAKIPGAEHIDFDPEEADESAKEIIRMAIEAFKRR 382 (613)
T ss_pred cccCCCCceeecCCccchHHHHHHHHHHHHhhhhhc
Confidence 4568999999999988772 2245677788777665
No 36
>PF01899 MNHE: Na+/H+ ion antiporter subunit; InterPro: IPR002758 This family contains both characterised and uncharacterised bacterial and archaeal proteins; some of which are possibly transmembrane proteins involved in Na+/H+ or K+/H+ transport. The characterised proteins are mnhE (Staphylococcus aureus) and phaE. (Rhizobium meliloti), which are subunits of the Na+/H+ or K+/H+ antiporters, that are required for sodium and potassium excretion, respectively [, ].; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016021 integral to membrane
Probab=25.42 E-value=1.2e+02 Score=19.46 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=11.0
Q ss_pred ecCCceeeeechhH
Q psy455 16 RLDGVGCLEYDEEK 29 (58)
Q Consensus 16 rldG~~~Lefdee~ 29 (58)
-+||.-.+++|++.
T Consensus 111 LTPGTltv~i~~~~ 124 (156)
T PF01899_consen 111 LTPGTLTVDIDDDR 124 (156)
T ss_pred ccCCcEEEEEECCC
Confidence 46888888888877
No 37
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.36 E-value=61 Score=23.31 Aligned_cols=18 Identities=6% Similarity=0.346 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy455 38 RDQIERYNQRLRDAYLGF 55 (58)
Q Consensus 38 re~~e~~~~R~refEdr~ 55 (58)
+|.|++++.+++||++.+
T Consensus 71 ~ekm~~~qk~m~efq~e~ 88 (201)
T COG1422 71 QEKMKELQKMMKEFQKEF 88 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666666665544
No 38
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.95 E-value=35 Score=22.57 Aligned_cols=7 Identities=43% Similarity=1.768 Sum_probs=5.2
Q ss_pred EEeeeee
Q psy455 5 CVRWRGW 11 (58)
Q Consensus 5 cV~wrG~ 11 (58)
++.||||
T Consensus 22 Y~wwKGw 28 (126)
T PF07889_consen 22 YMWWKGW 28 (126)
T ss_pred eeeecCC
Confidence 5668887
No 39
>PF13206 VSG_B: Trypanosomal VSG domain
Probab=24.69 E-value=1e+02 Score=21.35 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=14.9
Q ss_pred ceeEEeeeeeeeceecCCceee
Q psy455 2 NGVCVRWRGWLDLERLDGVGCL 23 (58)
Q Consensus 2 NgVcV~wrG~~dl~rldG~~~L 23 (58)
||+||.+..+..-..+.++--+
T Consensus 300 ~~~CV~Y~~~~~~~~~~~IpW~ 321 (351)
T PF13206_consen 300 NGICVNYKNYSAAKGLGKIPWL 321 (351)
T ss_pred CceEEEeCCCcCccCCCCCchH
Confidence 6899999997765544444433
No 40
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=24.21 E-value=26 Score=24.26 Aligned_cols=13 Identities=54% Similarity=0.636 Sum_probs=10.9
Q ss_pred CceeeeechhHhh
Q psy455 19 GVGCLEYDEEKAM 31 (58)
Q Consensus 19 G~~~Lefdee~A~ 31 (58)
=+|+||||++...
T Consensus 57 vvG~LEYDp~~~~ 69 (193)
T PF04802_consen 57 VVGILEYDPEFPQ 69 (193)
T ss_pred HhhhhccCCcccc
Confidence 3799999999765
No 41
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.71 E-value=82 Score=23.41 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q psy455 38 RDQIERYNQRL 48 (58)
Q Consensus 38 re~~e~~~~R~ 48 (58)
.|.|++|..|+
T Consensus 49 sQRF~EYdErm 59 (299)
T PF02009_consen 49 SQRFEEYDERM 59 (299)
T ss_pred HHHHHHHHhhh
Confidence 44444444444
No 42
>COG2980 RlpB Rare lipoprotein B [Cell envelope biogenesis, outer membrane]
Probab=23.47 E-value=1.2e+02 Score=21.52 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=24.3
Q ss_pred eechhHhhhHHHHHHHHHHHHHHHHHhhh
Q psy455 24 EYDEEKAMIEDAMLRDQIERYNQRLRDAY 52 (58)
Q Consensus 24 efdee~A~~ED~~~re~~e~~~~R~refE 52 (58)
-=|.|++.+.+...+++.+|.-+|+-...
T Consensus 133 aK~~E~e~l~~EMR~daa~QLvrrl~sl~ 161 (178)
T COG2980 133 AKDEEREMLWNEMRRDAAEQLVRRLASLR 161 (178)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34789999999999999999999986543
No 43
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=23.39 E-value=64 Score=18.45 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=19.5
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYNQR 47 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~~R 47 (58)
+|| |.++.+| -.+++..|+..|++.=.
T Consensus 29 ~Pg-G~ie~gE---~~~~aa~RE~~EEtGl~ 55 (122)
T cd04673 29 FPG-GKVELGE---TLEQAALRELLEETGLE 55 (122)
T ss_pred CCC-cccCCCC---CHHHHHHHHHHHhhCcE
Confidence 454 6666665 46889999999998643
No 44
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=22.79 E-value=89 Score=17.51 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q psy455 36 MLRDQIERYNQR 47 (58)
Q Consensus 36 ~~re~~e~~~~R 47 (58)
.|+.+|+++++|
T Consensus 9 SM~~ai~eT~rR 20 (44)
T PF12344_consen 9 SMQKAIDETNRR 20 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 478888888776
No 45
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=22.59 E-value=50 Score=16.77 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=8.1
Q ss_pred eEEeeeeeeec
Q psy455 4 VCVRWRGWLDL 14 (58)
Q Consensus 4 VcV~wrG~~dl 14 (58)
+.|.|+|+-..
T Consensus 20 ylVkW~g~~~~ 30 (55)
T smart00298 20 YLVKWKGYSYS 30 (55)
T ss_pred EEEEECCCCCc
Confidence 67999996543
No 46
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=22.26 E-value=79 Score=18.59 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=22.5
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRL 48 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~~R~ 48 (58)
-+|| |.++-+| -.+++..|+..|+++=.+
T Consensus 32 ~~Pg-G~ve~gE---~~~~aa~RE~~EE~Gl~~ 60 (122)
T cd04682 32 DLPG-GHREGGE---TPLECVLRELLEEIGLTL 60 (122)
T ss_pred eCCC-ccccCCC---CHHHHHHHHHHHHhCCcc
Confidence 4677 8887665 367899999999998654
No 47
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=22.15 E-value=1.2e+02 Score=22.03 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=23.2
Q ss_pred chhHhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy455 26 DEEKAMIEDAMLRDQIERYNQRLRDAYLG 54 (58)
Q Consensus 26 dee~A~~ED~~~re~~e~~~~R~refEdr 54 (58)
-++..-.|-+.+|.||...|+|++.+|+.
T Consensus 189 ~~~~~~~~~~~lrrQi~klnrRl~~lE~~ 217 (246)
T PF05644_consen 189 SDEEEVVDAASLRRQIIKLNRRLQALEEE 217 (246)
T ss_pred CcchhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445566778999999999999999874
No 48
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=21.37 E-value=79 Score=18.66 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=20.9
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYNQRL 48 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~~R~ 48 (58)
+|| |.++-+|. .+++..|+..|+++=.+
T Consensus 32 ~Pg-G~ve~~Es---~~~aa~RE~~EE~Gl~~ 59 (129)
T cd04664 32 SVT-GGIEDGES---PAEAARREVAEETGLDP 59 (129)
T ss_pred ccC-cccCCCCC---HHHHHHHHHHHHHCCCh
Confidence 466 66777764 47899999999987543
No 49
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=21.35 E-value=75 Score=18.70 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=20.1
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYNQRL 48 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~~R~ 48 (58)
++| |.++-+|. .+++..|+..|+++=.+
T Consensus 32 ~PG-G~ve~gEt---~~~Aa~REl~EE~Gl~~ 59 (129)
T cd04678 32 LPG-GHLEFGES---FEECAAREVLEETGLHI 59 (129)
T ss_pred CCc-ccccCCCC---HHHHHHHHHHHHhCCcc
Confidence 355 66666663 77899999999987443
No 50
>KOG1602|consensus
Probab=20.99 E-value=51 Score=24.83 Aligned_cols=16 Identities=44% Similarity=0.509 Sum_probs=13.3
Q ss_pred CceeEEeeeeeeeceecC
Q psy455 1 MNGVCVRWRGWLDLERLD 18 (58)
Q Consensus 1 lNgVcV~wrG~~dl~rld 18 (58)
.+|||++.-| |+..|+
T Consensus 124 ~~gvririiG--dlslL~ 139 (271)
T KOG1602|consen 124 KYGVRIRVIG--DLSLLP 139 (271)
T ss_pred hcCeEEEEEc--chhhCC
Confidence 4799999999 777775
No 51
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.71 E-value=54 Score=23.76 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=12.0
Q ss_pred ceeEEeeeeeeeceecC
Q psy455 2 NGVCVRWRGWLDLERLD 18 (58)
Q Consensus 2 NgVcV~wrG~~dl~rld 18 (58)
|||||++-| |++.||
T Consensus 95 ~~irvr~iG--d~~~Lp 109 (239)
T PRK14839 95 NGVRLTVIG--RRDRLP 109 (239)
T ss_pred CCCEEEEEe--ChhhCC
Confidence 689999999 666665
No 52
>PRK12651 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=20.69 E-value=1.6e+02 Score=19.25 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.3
Q ss_pred ecCCceeeeechhH
Q psy455 16 RLDGVGCLEYDEEK 29 (58)
Q Consensus 16 rldG~~~Lefdee~ 29 (58)
-+||.-.+++|+++
T Consensus 112 LtPGTl~vdv~~~~ 125 (158)
T PRK12651 112 LTPGTLTLDVSDDR 125 (158)
T ss_pred CCCCeEEEEEeCCC
Confidence 47888899888876
No 53
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=20.67 E-value=54 Score=23.37 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=12.3
Q ss_pred ceeEEeeeeeeeceecC
Q psy455 2 NGVCVRWRGWLDLERLD 18 (58)
Q Consensus 2 NgVcV~wrG~~dl~rld 18 (58)
|||+|++-| |++.||
T Consensus 85 ~~irvr~iG--d~~~Lp 99 (226)
T TIGR00055 85 YNVRIRIIG--DLSLLS 99 (226)
T ss_pred CCCEEEEEe--ChhhCC
Confidence 689999999 777666
No 54
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands.
Probab=20.49 E-value=44 Score=22.84 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=26.6
Q ss_pred ceeEEeeeeeeeceecCCceeeeechhHhhhHH
Q psy455 2 NGVCVRWRGWLDLERLDGVGCLEYDEEKAMIED 34 (58)
Q Consensus 2 NgVcV~wrG~~dl~rldG~~~Lefdee~A~~ED 34 (58)
.|.|+..+|-+=-+-|.|.+.+=|....+..++
T Consensus 2 ~GyC~~Y~G~iC~~yL~~~~~V~~~~s~~~~~~ 34 (147)
T cd07469 2 AGYCATYRGEVCRAYLSNDALVWFNSSYADPEG 34 (147)
T ss_pred CCccccccchHHHHHhCCCcEEEEecCCCCHHH
Confidence 599999999998899998888877776655553
Done!