Query psy455
Match_columns 58
No_of_seqs 36 out of 38
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 19:55:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e50_B Core-binding factor CBF 99.8 1.6E-21 5.3E-26 130.0 1.7 33 1-33 102-134 (134)
2 2l5g_B Putative uncharacterize 43.6 25 0.00085 19.1 2.9 24 26-54 15-38 (42)
3 3oga_A Nucleoside triphosphata 36.7 25 0.00085 20.4 2.4 27 16-46 58-84 (165)
4 3brv_B NF-kappa-B essential mo 35.6 39 0.0013 20.0 3.1 20 31-50 14-33 (70)
5 1f46_A Cell division protein Z 35.3 24 0.00081 22.1 2.2 18 37-54 121-138 (140)
6 3ees_A Probable pyrophosphohyd 33.9 25 0.00086 19.7 2.0 25 17-45 52-76 (153)
7 1f3y_A Diadenosine 5',5'''-P1, 31.1 29 0.00099 19.7 2.0 27 16-46 41-67 (165)
8 2yvp_A NDX2, MUTT/nudix family 29.3 31 0.0011 20.5 2.0 25 17-45 72-96 (182)
9 3eds_A MUTT/nudix family prote 26.9 38 0.0013 19.5 2.0 25 17-45 47-71 (153)
10 2jro_A Uncharacterized protein 26.8 35 0.0012 20.4 1.9 36 17-52 26-64 (78)
11 1sjy_A MUTT/nudix family prote 26.0 42 0.0014 19.0 2.0 26 16-45 46-71 (159)
12 3gwy_A Putative CTP pyrophosph 25.2 43 0.0015 18.8 2.0 26 16-45 37-62 (140)
13 2rsn_A Chromo domain-containin 24.0 25 0.00085 20.0 0.8 9 4-12 40-48 (75)
14 3i91_A Chromobox protein homol 23.7 19 0.00065 18.9 0.2 10 4-13 21-30 (54)
15 1nqz_A COA pyrophosphatase (MU 22.8 49 0.0017 19.9 2.0 26 17-46 68-93 (194)
16 3h91_A Chromobox protein homol 22.4 21 0.00071 18.8 0.2 11 4-14 21-31 (54)
17 2w4e_A MUTT/nudix family prote 22.1 45 0.0016 19.1 1.7 22 21-45 39-60 (145)
18 1oao_A CODH, carbon monoxide d 22.1 86 0.003 24.9 3.7 32 15-47 378-411 (674)
19 3hkl_A Muscle, skeletal recept 22.1 76 0.0026 21.8 3.0 33 2-34 17-49 (197)
20 3grn_A MUTT related protein; s 21.5 56 0.0019 18.6 2.0 25 17-45 40-64 (153)
21 3p4h_A ATP-dependent DNA ligas 21.5 30 0.001 22.1 0.9 9 1-9 23-31 (118)
22 4dyw_A MUTT/nudix family prote 21.4 55 0.0019 19.0 2.0 25 17-45 58-82 (157)
23 3f8x_A Putative delta-5-3-keto 21.4 72 0.0025 19.4 2.6 26 2-27 90-115 (148)
24 1y66_A Engrailed homeodomain; 21.2 71 0.0024 17.8 2.3 7 48-54 45-51 (52)
25 1su8_A CODH 2, carbon monoxide 21.2 85 0.0029 24.7 3.5 33 15-47 356-389 (636)
26 2dbn_A Hypothetical protein YB 21.0 24 0.00083 26.9 0.4 25 3-27 292-320 (461)
27 3hpw_C Protein CCDA; alpha+bet 20.3 75 0.0026 16.1 2.1 14 37-50 12-25 (36)
No 1
>1e50_B Core-binding factor CBF-beta; transcription factor, transcription; 2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A 1io4_D 2jhb_A 1cl3_A
Probab=99.82 E-value=1.6e-21 Score=130.03 Aligned_cols=33 Identities=70% Similarity=1.514 Sum_probs=32.1
Q ss_pred CceeEEeeeeeeeceecCCceeeeechhHhhhH
Q psy455 1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIE 33 (58)
Q Consensus 1 lNgVcV~wrG~~dl~rldG~~~Lefdee~A~~E 33 (58)
||||||+|||||||++|||+||||||+++|++|
T Consensus 102 ~NGVCV~~rGwldlerLdG~g~LefDeerA~~E 134 (134)
T 1e50_B 102 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQE 134 (134)
T ss_dssp ETTEEEEEEEEEETTTSEEEEEEEECHHHHHHC
T ss_pred ecceEEEEEEEEeeecccceEEeeECHHHhhcC
Confidence 799999999999999999999999999999986
No 2
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.58 E-value=25 Score=19.05 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=18.9
Q ss_pred chhHhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy455 26 DEEKAMIEDAMLRDQIERYNQRLRDAYLG 54 (58)
Q Consensus 26 dee~A~~ED~~~re~~e~~~~R~refEdr 54 (58)
|.|-++ ..++|..++.|++++|+-
T Consensus 15 drEI~K-----te~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 15 DREITM-----VEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 455555 788899999999999874
No 3
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=36.70 E-value=25 Score=20.43 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=20.5
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYNQ 46 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~~ 46 (58)
-+|| |.++.+| -.+++..||..|++.=
T Consensus 58 ~lPg-G~ve~gE---~~~~aa~REl~EEtGl 84 (165)
T 3oga_A 58 ALSG-GGVEPGE---RIEEALRREIREELGE 84 (165)
T ss_dssp ECCC-EECCTTC---CHHHHHHHHHHHHHCS
T ss_pred ECCc-cccCCCC---CHHHHHHHHHHHHhCC
Confidence 4677 7787776 3567889999999753
No 4
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=35.60 E-value=39 Score=19.99 Aligned_cols=20 Identities=45% Similarity=0.607 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q psy455 31 MIEDAMLRDQIERYNQRLRD 50 (58)
Q Consensus 31 ~~ED~~~re~~e~~~~R~re 50 (58)
-.|...++++|.+.|+-+++
T Consensus 14 l~EN~~LreAlkqsNq~mke 33 (70)
T 3brv_B 14 LEENQELRDAIRQSNQILRE 33 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 46788899999999998775
No 5
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=35.32 E-value=24 Score=22.13 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy455 37 LRDQIERYNQRLRDAYLG 54 (58)
Q Consensus 37 ~re~~e~~~~R~refEdr 54 (58)
.-++++.+++|+++|+++
T Consensus 121 t~~~~~~ir~~l~~~~~~ 138 (140)
T 1f46_A 121 TPQKLREYQDIIREVKDA 138 (140)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 457889999999999875
No 6
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=33.87 E-value=25 Score=19.70 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=18.3
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYN 45 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~ 45 (58)
+|| |.++.+| ..+++..|+..|++.
T Consensus 52 ~Pg-G~ve~gE---~~~~aa~RE~~EE~G 76 (153)
T 3ees_A 52 FPG-GKIENGE---TPEEALARELNEELG 76 (153)
T ss_dssp CSE-EECCTTC---CHHHHHHHHHHHHHS
T ss_pred CCc-eeeCCCC---CHHHHHHHHHHHHHC
Confidence 455 6677665 467888999999875
No 7
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=31.13 E-value=29 Score=19.68 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=20.5
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYNQ 46 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~~ 46 (58)
-+|| |.++-+| -.+++..||..|++.=
T Consensus 41 ~~Pg-G~ve~gE---~~~~aa~RE~~EEtGl 67 (165)
T 1f3y_A 41 QMPQ-GGIDEGE---DPRNAAIRELREETGV 67 (165)
T ss_dssp ECCE-EECCTTC---CHHHHHHHHHHHHHCC
T ss_pred ECCe-eccCCCC---CHHHHHHHHHHHhhCC
Confidence 4677 7887666 3578899999999764
No 8
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=29.35 E-value=31 Score=20.46 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=19.6
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYN 45 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~ 45 (58)
+|| |.++.+| -.+++..||..|++.
T Consensus 72 ~Pg-G~ve~gE---s~~~aa~REl~EEtG 96 (182)
T 2yvp_A 72 VPA-GKVDEGE---TPEAAARRELREEVG 96 (182)
T ss_dssp CCE-EECCTTC---CHHHHHHHHHHHHHC
T ss_pred ecc-ccCCCCc---CHHHHHHHHHHHHhC
Confidence 677 7787766 467889999999875
No 9
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=26.93 E-value=38 Score=19.54 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=19.0
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYN 45 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~ 45 (58)
+|| |.++.+| -.+++..||..|++.
T Consensus 47 lPg-G~ve~gE---s~~~aa~REl~EEtG 71 (153)
T 3eds_A 47 LPA-GAIELGE---TPEEAVVREVWEETG 71 (153)
T ss_dssp CSE-EECCTTS---CHHHHHHHHHHHHHC
T ss_pred CCc-cccCCCC---CHHHHHHHHHHHHHC
Confidence 565 7777666 467888999999875
No 10
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=26.81 E-value=35 Score=20.40 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=28.4
Q ss_pred cCCceeeeechhHh---hhHHHHHHHHHHHHHHHHHhhh
Q psy455 17 LDGVGCLEYDEEKA---MIEDAMLRDQIERYNQRLRDAY 52 (58)
Q Consensus 17 ldG~~~Lefdee~A---~~ED~~~re~~e~~~~R~refE 52 (58)
.+|+|.+|||..+- +..|.....+|.|-|+-+..+.
T Consensus 26 I~g~G~FeFd~GkillP~~~d~~~~~~~sEIN~~I~~L~ 64 (78)
T 2jro_A 26 VKDLGRLEFEKGRFLLPRKSLPKVKQAILELNELIEAQN 64 (78)
T ss_dssp ETTTEEEEEETTEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecccEEEcCCEEeCCccccHHHHHHHHHHHHHHHHHH
Confidence 57999999998765 3467778888889888877653
No 11
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=26.01 E-value=42 Score=19.02 Aligned_cols=26 Identities=27% Similarity=0.389 Sum_probs=18.9
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYN 45 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~ 45 (58)
-+|| |.++.+| -.+++..||..|++.
T Consensus 46 ~~Pg-G~ve~gE---~~~~aa~RE~~EEtG 71 (159)
T 1sjy_A 46 HIPS-GAVEDGE---NPQDAAVREACEETG 71 (159)
T ss_dssp ECSE-EECCTTS---CHHHHHHHHHHHHHS
T ss_pred ECCc-cccCCCC---CHHHHHHHHHHHHHC
Confidence 3565 6777665 367888999999875
No 12
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=25.24 E-value=43 Score=18.80 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=18.3
Q ss_pred ecCCceeeeechhHhhhHHHHHHHHHHHHH
Q psy455 16 RLDGVGCLEYDEEKAMIEDAMLRDQIERYN 45 (58)
Q Consensus 16 rldG~~~Lefdee~A~~ED~~~re~~e~~~ 45 (58)
-+|| |.++.+| -.+++..||..|+++
T Consensus 37 ~lPg-G~ve~gE---~~~~aa~REl~EE~G 62 (140)
T 3gwy_A 37 EFPG-GKVEEGE---SLQEALQREIMEEMD 62 (140)
T ss_dssp ECSE-EECCTTC---CHHHHHHHHHHHHHC
T ss_pred ECCC-ccCCCCC---CHHHHHHHHHHHhhC
Confidence 3565 6666665 456788999999875
No 13
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=24.04 E-value=25 Score=19.96 Aligned_cols=9 Identities=22% Similarity=0.907 Sum_probs=7.2
Q ss_pred eEEeeeeee
Q psy455 4 VCVRWRGWL 12 (58)
Q Consensus 4 VcV~wrG~~ 12 (58)
.-|.|+||-
T Consensus 40 YlVkWkGy~ 48 (75)
T 2rsn_A 40 YYIKWAGYD 48 (75)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCCC
Confidence 469999984
No 14
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=23.71 E-value=19 Score=18.89 Aligned_cols=10 Identities=40% Similarity=1.331 Sum_probs=7.7
Q ss_pred eEEeeeeeee
Q psy455 4 VCVRWRGWLD 13 (58)
Q Consensus 4 VcV~wrG~~d 13 (58)
.-|.|+||-+
T Consensus 21 YlVkWkGy~~ 30 (54)
T 3i91_A 21 YLVKWKGWSQ 30 (54)
T ss_dssp EEEEETTSCG
T ss_pred EEEEEeCCCc
Confidence 3589999865
No 15
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=22.83 E-value=49 Score=19.86 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=19.8
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYNQ 46 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~~ 46 (58)
+|| |.++-+| -.+++..||..|++.=
T Consensus 68 lPg-G~ve~gE---s~~~aa~REl~EEtGl 93 (194)
T 1nqz_A 68 FPG-GSLDAGE---TPTQAALREAQEEVAL 93 (194)
T ss_dssp CSE-EECCTTC---CHHHHHHHHHHHHHCC
T ss_pred CCc-ccCCCCC---CHHHHHHHHHHHHHCC
Confidence 565 7777666 4678999999999863
No 16
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=22.38 E-value=21 Score=18.77 Aligned_cols=11 Identities=45% Similarity=1.196 Sum_probs=8.0
Q ss_pred eEEeeeeeeec
Q psy455 4 VCVRWRGWLDL 14 (58)
Q Consensus 4 VcV~wrG~~dl 14 (58)
.-|.|+||-+-
T Consensus 21 YlVkWkGy~~~ 31 (54)
T 3h91_A 21 YLVKWRGWSSK 31 (54)
T ss_dssp EEEEETTSCGG
T ss_pred EEEEEeCCCCc
Confidence 35899998643
No 17
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=22.12 E-value=45 Score=19.10 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=16.3
Q ss_pred eeeeechhHhhhHHHHHHHHHHHHH
Q psy455 21 GCLEYDEEKAMIEDAMLRDQIERYN 45 (58)
Q Consensus 21 ~~Lefdee~A~~ED~~~re~~e~~~ 45 (58)
|.++-+| -.+++..||..|++.
T Consensus 39 G~ve~gE---t~~~aa~REl~EEtG 60 (145)
T 2w4e_A 39 GGVEKGE---DLGAAAARELLEEVG 60 (145)
T ss_dssp EECCTTC---CHHHHHHHHHHHHHC
T ss_pred ccCCCCC---CHHHHHHHHHHHhhC
Confidence 5565554 457899999999975
No 18
>1oao_A CODH, carbon monoxide dehydrogenase/acetyl-COA synthase beta; oxidoreductase-transferase complex, electron transfer, oxidoreductase; 1.90A {Moorella thermoacetica} SCOP: e.26.1.2 PDB: 1mjg_A 2z8y_A 3i01_A 3i04_A
Probab=22.07 E-value=86 Score=24.91 Aligned_cols=32 Identities=31% Similarity=0.586 Sum_probs=23.2
Q ss_pred eecCCceeeeechhHhhhHHH--HHHHHHHHHHHH
Q psy455 15 ERLDGVGCLEYDEEKAMIEDA--MLRDQIERYNQR 47 (58)
Q Consensus 15 ~rldG~~~Lefdee~A~~ED~--~~re~~e~~~~R 47 (58)
-++||+-.++||++.+ .|++ +.+.+++.+..|
T Consensus 378 a~~pG~~hi~~d~~~a-~e~a~~iI~~Aie~f~~r 411 (674)
T 1oao_A 378 AKIPGAYHIDYQTATA-IESAKTAIRMAIEAFKER 411 (674)
T ss_dssp BCCTTSEECCCCGGGH-HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeeecCCCccH-HHHHHHHHHHHHHhhhhc
Confidence 3789999999998766 3443 566777776665
No 19
>3hkl_A Muscle, skeletal receptor tyrosine protein kinase; MUSK, receptor tyrosine kinase, frizzled CRD, ATP-binding, D bond, glycoprotein; HET: NAG; 2.10A {Rattus norvegicus}
Probab=22.05 E-value=76 Score=21.78 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=26.3
Q ss_pred ceeEEeeeeeeeceecCCceeeeechhHhhhHH
Q psy455 2 NGVCVRWRGWLDLERLDGVGCLEYDEEKAMIED 34 (58)
Q Consensus 2 NgVcV~wrG~~dl~rldG~~~Lefdee~A~~ED 34 (58)
+|.|+..||-+=-.-|.|.+.|-|+.-.+..|+
T Consensus 17 ~GyC~~YrG~vC~~yL~g~~~Vf~nsS~~dp~~ 49 (197)
T 3hkl_A 17 KGYCAQYRGEVCDAVLVKDSLVFFNTSYPDPEE 49 (197)
T ss_dssp CEEEECCCCSSSTTTSCTTCCEEEETTSSSHHH
T ss_pred CcccccccchHHHHHhCCCceEEEecCcCCHHH
Confidence 699999999988899999999988744444443
No 20
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=21.55 E-value=56 Score=18.61 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=17.3
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYN 45 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~ 45 (58)
+|| |.++.+| -.+++..||..|++.
T Consensus 40 ~Pg-G~ve~gE---~~~~aa~REl~EE~G 64 (153)
T 3grn_A 40 LPG-GKVNPDE---SLKEGVAREVWEETG 64 (153)
T ss_dssp CSE-EECCTTC---CHHHHHHHHHHHHHC
T ss_pred Cce-eecCCCC---CHHHHHHhhhhhhhC
Confidence 443 5666655 356788999999875
No 21
>3p4h_A ATP-dependent DNA ligase, N-terminal domain prote; phosphoesterase, metalloenzyme, manganese, beta barrel, PHOS hydrolase; HET: PEG; 1.10A {Candidatus korarchaeum cryptofilum} PDB: 3ta5_A 3ta7_A*
Probab=21.46 E-value=30 Score=22.05 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=7.3
Q ss_pred CceeEEeee
Q psy455 1 MNGVCVRWR 9 (58)
Q Consensus 1 lNgVcV~wr 9 (58)
++|||+||.
T Consensus 23 ~dGvl~SWA 31 (118)
T 3p4h_A 23 MDNVLKSWA 31 (118)
T ss_dssp ETTEEEEEE
T ss_pred cCCeEEEEE
Confidence 479999995
No 22
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=21.44 E-value=55 Score=19.00 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=18.3
Q ss_pred cCCceeeeechhHhhhHHHHHHHHHHHHH
Q psy455 17 LDGVGCLEYDEEKAMIEDAMLRDQIERYN 45 (58)
Q Consensus 17 ldG~~~Lefdee~A~~ED~~~re~~e~~~ 45 (58)
+|| |.++.+| -.+++..||..|++.
T Consensus 58 lPg-G~ve~gE---s~~~aa~REl~EEtG 82 (157)
T 4dyw_A 58 LPG-GKVDWLE---PVERAVCREIEEELG 82 (157)
T ss_dssp CCE-EECCTTC---CHHHHHHHHHHHHHS
T ss_pred CCc-ccCCCCC---CHHHHHHHHHHHHHC
Confidence 454 6676665 467888999999875
No 23
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=21.40 E-value=72 Score=19.44 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=19.1
Q ss_pred ceeEEeeeeeeeceecCCceeeeech
Q psy455 2 NGVCVRWRGWLDLERLDGVGCLEYDE 27 (58)
Q Consensus 2 NgVcV~wrG~~dl~rldG~~~Lefde 27 (58)
|+..+.|...++-..+.|+-.++||+
T Consensus 90 ~~~~l~f~~~~~g~~v~Gvdvl~~d~ 115 (148)
T 3f8x_A 90 SGYVLEFNANMGDELLTGVDLIEFND 115 (148)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CeEEEEEEEEECCEEEEEEEEEEECC
Confidence 45566777666556788999999975
No 24
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=21.23 E-value=71 Score=17.76 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=4.8
Q ss_pred HHhhhhh
Q psy455 48 LRDAYLG 54 (58)
Q Consensus 48 ~refEdr 54 (58)
.|+||.|
T Consensus 45 frefeqr 51 (52)
T 1y66_A 45 FREFEQR 51 (52)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 4677766
No 25
>1su8_A CODH 2, carbon monoxide dehydrogenase 2; nickel, cluster C, oxidoreductase; HET: NFS; 1.10A {Carboxydothermus hydrogenoformans} SCOP: e.26.1.2 PDB: 1su6_A* 1su7_A* 1suf_A* 2yiv_X* 3b51_X 3b52_X 3b53_X 3i39_X
Probab=21.19 E-value=85 Score=24.71 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=23.9
Q ss_pred eecCCceeeeechhHh-hhHHHHHHHHHHHHHHH
Q psy455 15 ERLDGVGCLEYDEEKA-MIEDAMLRDQIERYNQR 47 (58)
Q Consensus 15 ~rldG~~~Lefdee~A-~~ED~~~re~~e~~~~R 47 (58)
-++||+-.++||++.+ +.=..+.+.+++.+..|
T Consensus 356 a~~pG~~hi~~d~~~~~e~a~~iI~~Aie~f~~r 389 (636)
T 1su8_A 356 SKITGATHVNFAEEAAVENAKQILRLAIDTFKRR 389 (636)
T ss_dssp BCCTTSEECCCCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCeeecCCcccHHHHHHHHHHHHHHhchhc
Confidence 3789999999999876 33344677777766555
No 26
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=21.01 E-value=24 Score=26.86 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=18.5
Q ss_pred eeEEe---eeeeeeceec-CCceeeeech
Q psy455 3 GVCVR---WRGWLDLERL-DGVGCLEYDE 27 (58)
Q Consensus 3 gVcV~---wrG~~dl~rl-dG~~~Lefde 27 (58)
|.|.. |+|||.|..+ +|-|.|..-+
T Consensus 292 ~~Cs~FR~fQGwlaLS~~gP~eGtL~v~P 320 (461)
T 2dbn_A 292 TKCSVFRTFQGWTALSDMLPGQGLLHVVP 320 (461)
T ss_dssp -CCCSCCSEEEEEESSCBCTTSSCEEECS
T ss_pred CcccccceeeeehhccCCCCCCCcEEEee
Confidence 46665 5599999777 5888887777
No 27
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=20.34 E-value=75 Score=16.11 Aligned_cols=14 Identities=0% Similarity=0.007 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHh
Q psy455 37 LRDQIERYNQRLRD 50 (58)
Q Consensus 37 ~re~~e~~~~R~re 50 (58)
=+++|+.+|+.+.+
T Consensus 12 N~~ai~~~N~~ve~ 25 (36)
T 3hpw_C 12 NQEGMAEVARFIEM 25 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46889999988754
Done!