RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy455
(58 letters)
>gnl|CDD|216970 pfam02312, CBF_beta, Core binding factor beta subunit. Core
binding factor (CBF) is a heterodimeric transcription
factor essential for genetic regulation of hematopoiesis
and osteogenesis. The beta subunit enhances DNA-binding
ability of the alpha subunit in vitro, and has been show
to have a structure related to the OB fold.
Length = 170
Score = 87.5 bits (217), Expect = 5e-24
Identities = 37/50 (74%), Positives = 47/50 (94%)
Query: 1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
+NGVCV +RGW+DLERLDG+GCLEYDEE+A EDA+LR+Q+E+YNQRLR+
Sbjct: 98 LNGVCVIFRGWMDLERLDGMGCLEYDEERAQQEDAILREQLEQYNQRLRE 147
>gnl|CDD|185348 PRK15451, PRK15451, tRNA cmo(5)U34 methyltransferase; Provisional.
Length = 247
Score = 36.9 bits (85), Expect = 1e-04
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
D +R +G LE ++++M+E+ ML D +E + RL A GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKA--GFEH 225
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 26.8 bits (59), Expect = 0.56
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 27 EEKAMIEDA-MLRDQIERYNQRLRDAYLGFR 56
E+K DA +LR+ + + + R+R+AYL +
Sbjct: 429 EKKISNNDAKLLREMVWKRDGRIREAYLSCK 459
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 26.1 bits (57), Expect = 0.94
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 33 EDAMLRDQIERYNQRLRDA 51
E LRD+ E Y +RLR A
Sbjct: 254 EFDPLRDEGEAYAERLRAA 272
>gnl|CDD|129823 TIGR00740, TIGR00740, tRNA (cmo5U34)-methyltransferase. This tRNA
methyltransferase is involved, together with cmoB, in
preparing the uridine-5-oxyacetic acid (cmo5U) at
position 34 [Unknown function, Enzymes of unknown
specificity].
Length = 239
Score = 25.6 bits (56), Expect = 1.3
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
+R +G LE +++ +E+ M D IE + RL++ GF +
Sbjct: 180 QFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNV--GFSH 222
>gnl|CDD|147119 pfam04802, SMK-1, Component of IIS longevity pathway SMK-1. SMK-1
is a component of the IIs longevity pathway which
regulates aging in C.elegans. Specifically, SMK-1
influences DAF-16-dependant regulation of the aging
process by regulating the transcriptional specificity of
DAF-16 activity. SMK-1 plays a role in longevity by
modulating the transcriptional specificity of DAF-16.
Length = 193
Score = 25.6 bits (57), Expect = 1.4
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 22/59 (37%)
Query: 17 LDGVGCLEYDEE----KAM----------------IEDAMLRDQIER--YNQRLRDAYL 53
+ VGCLEYD E KA I++ LR +I + Q L+D L
Sbjct: 55 MGVVGCLEYDPEFPQPKANHRQFLTQNAKFKEVIPIKNPELRQKIHQTYRLQYLKDVVL 113
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase.
Length = 251
Score = 25.0 bits (54), Expect = 2.2
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 21 GCLEYDEEKAMIEDAMLRDQIERY 44
G L+ +KA+++D + +E+Y
Sbjct: 201 GLLQLPTDKALLDDPLFLPFVEKY 224
>gnl|CDD|212539 cd11593, Agmatinase-like_2, Agmatinase and related proteins. This
family includes known and predicted bacterial and
archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB;
EC=3.5.3.11), a binuclear manganese metalloenzyme that
belongs to the ureohydrolase superfamily. It is a key
enzyme in the synthesis of polyamine putrescine; it
catalyzes hydrolysis of agmatine to yield urea and
putrescine, the precursor for biosynthesis of higher
polyamines, spermidine, and spermine. As compared to E.
coli where two paths to putrescine exist, via
decarboxylation of an amino acid, ornithine or arginine,
a single path is found in Bacillus subtilis, where
polyamine synthesis starts with agmatine; the speE and
speB encode spermidine synthase and agmatinase,
respectively. The level of agmatinase synthesis is very
low, allowing strict control on the synthesis of
putrescine and therefore, of all polyamines, consistent
with polyamine levels in the cell. This subfamily
belongs to the ureohydrolase superfamily, which includes
arginase, agmatinase, proclavaminate amidinohydrolase,
and formiminoglutamase.
Length = 263
Score = 24.7 bits (55), Expect = 2.7
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 48 LRDAYLGFRY 57
LRD Y G +Y
Sbjct: 117 LRDEYEGSKY 126
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 24.1 bits (53), Expect = 5.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 33 EDAMLRDQIERYNQRLRDA 51
E LRD+ E Y +RLR A
Sbjct: 171 EFDPLRDEGEAYAERLRAA 189
>gnl|CDD|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily
of the Escherichia coli CorA-Salmonella typhimurium ZntB
family. A uncharacterized subfamily of the Escherichia
coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like)
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes.The EcCorA-ZntB-like
family includes the Mg2+ transporters Escherichia coli
and Salmonella typhimurium CorAs, which can also
transport Co2+, and Ni2+. Structures of the
intracellular domain of EcCorA-ZntB-like family members,
Vibrio parahaemolyticus and Salmonella typhimurium ZntB,
form funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA. Natural
variants such as GVN and GIN, such as occur in some ZntB
family proteins, may be associated with the transport of
different divalent cations, such as zinc and cadmium.
The functional diversity of MIT transporters may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 289
Score = 23.6 bits (52), Expect = 6.8
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 25 YDEEKAMIEDAM-----LRDQIERYNQ---RLRDAY 52
+E+K ++ED + + E Y+ L DA+
Sbjct: 183 DEEDKELLEDVIIENKQAIEMAEIYSDILSGLMDAF 218
>gnl|CDD|236233 PRK08311, PRK08311, putative RNA polymerase sigma factor SigI;
Reviewed.
Length = 237
Score = 23.3 bits (51), Expect = 8.0
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 23 LEYDEEKAMIEDAMLRDQIERYNQRLRD 50
L +E + E+ R++IE + + L++
Sbjct: 116 LSLEEYQEEEENEERREEIEEFKKELKE 143
>gnl|CDD|225114 COG2204, AtoC, Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms].
Length = 464
Score = 23.4 bits (51), Expect = 9.3
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 23 LEYDEEKAMIEDAMLRDQIERYNQRLRDA--YLG 54
L E A +E ++ +ER +A LG
Sbjct: 408 LPLGEALAEVERQLILQALERTGGNKSEAAERLG 441
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.144 0.469
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,254,264
Number of extensions: 234524
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 18
Length of query: 58
Length of database: 10,937,602
Length adjustment: 30
Effective length of query: 28
Effective length of database: 9,606,982
Effective search space: 268995496
Effective search space used: 268995496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)