RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy455
(58 letters)
>1e50_B Core-binding factor CBF-beta; transcription factor, transcription;
2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A
1io4_D 2jhb_A 1cl3_A
Length = 134
Score = 63.1 bits (153), Expect = 4e-15
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIE 33
+NGVCV W+GW+DL+RLDG+GCLE+DEE+A E
Sbjct: 102 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQE 134
>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured
bacterium} PDB: 3dnm_A
Length = 322
Score = 24.6 bits (54), Expect = 1.9
Identities = 3/16 (18%), Positives = 4/16 (25%)
Query: 36 MLRDQIERYNQRLRDA 51
L +R A
Sbjct: 252 ALLSDSTTLAERAGAA 267
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Length = 323
Score = 24.5 bits (54), Expect = 2.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 37 LRDQIERYNQRLRDA 51
LRDQ E Y +L +
Sbjct: 265 LRDQGEAYANKLLQS 279
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 24.5 bits (54), Expect = 2.1
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 37 LRDQIERYNQRLRDA 51
LRD + Y + L A
Sbjct: 254 LRDVGKLYAEALNKA 268
>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured
bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A*
3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A
Length = 322
Score = 24.6 bits (54), Expect = 2.2
Identities = 2/16 (12%), Positives = 7/16 (43%)
Query: 36 MLRDQIERYNQRLRDA 51
+L D + + + +
Sbjct: 252 VLLDDSIKLDAKAKAD 267
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 24.5 bits (54), Expect = 2.3
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 37 LRDQIERYNQRLRDA 51
LRD+ E Y +++ +
Sbjct: 253 LRDEGELYAYKMKAS 267
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 24.2 bits (53), Expect = 2.3
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 37 LRDQIERYNQRLRDA 51
LRD+ E Y L+
Sbjct: 256 LRDEGELYAHLLKTR 270
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 24.1 bits (53), Expect = 2.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 37 LRDQIERYNQRLRDA 51
LRD+ E + Q LR A
Sbjct: 257 LRDEGEVFGQMLRRA 271
>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A,
alpha/beta hydrolase family; 1.85A {Bacillus subtilis}
SCOP: c.69.1.2
Length = 361
Score = 24.0 bits (52), Expect = 3.1
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 37 LRDQIERYNQRLRDA 51
LRD+ + +RL A
Sbjct: 301 LRDEGIAFARRLARA 315
>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus
subsp}
Length = 326
Score = 23.9 bits (52), Expect = 3.2
Identities = 2/16 (12%), Positives = 6/16 (37%)
Query: 36 MLRDQIERYNQRLRDA 51
M ++ + Q +
Sbjct: 268 MTHPDMKLFEQMMLQH 283
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 23.8 bits (52), Expect = 3.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 37 LRDQIERYNQRLRDA 51
RD++ Y QRL A
Sbjct: 260 FRDEVLDYAQRLLGA 274
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 23.8 bits (52), Expect = 3.9
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 37 LRDQIERYNQRLRDA 51
L D +Q L+
Sbjct: 267 LIDDSRLLHQTLQAH 281
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG,
structural genomics, midwest center for structural
genomics, protein S initiative; 2.45A {Bacillus
halodurans}
Length = 165
Score = 23.8 bits (52), Expect = 3.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 32 IEDAMLRDQIERYNQRLRDAY 52
IE+ L Q+ R Q D +
Sbjct: 141 IENVELYGQVLRSKQEWEDTF 161
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate,
helical B glycoprotein, membrane protein; HET: NAG;
2.55A {Homo sapiens} PDB: 4ad7_A*
Length = 478
Score = 23.6 bits (50), Expect = 4.6
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 34 DAMLRDQIER---YNQRLRDAYLG 54
D +R QI + RLR AY G
Sbjct: 449 DMTIRQQIMQLKIMTNRLRSAYNG 472
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 23.5 bits (51), Expect = 5.2
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 13 DLERLDGVGCLEYDEEKAMIEDA---MLRDQIERYNQRLRDA 51
+ RL G+ K++I + + D+ Y LR+
Sbjct: 275 NGRRLGGLPF-----AKSLIIVSGLDLTCDRQLAYADALRED 311
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 23.4 bits (51), Expect = 5.4
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 37 LRDQIERYNQRLRDA 51
LRD+ Y RL A
Sbjct: 262 LRDEGIEYALRLLQA 276
>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor,
gibberellin, gibberellin signaling pathway, hydrolase,
nucleus, receptor, developmental protein; HET: GA3;
1.80A {Arabidopsis thaliana} PDB: 2zsi_A*
Length = 351
Score = 23.1 bits (50), Expect = 6.0
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 15 ERLDGVGCLEYDEEKAMIEDA---MLRDQIERYNQRLRDA 51
+ L+GV K+++ A ++RD Y + L+ A
Sbjct: 278 KSLEGVSF-----PKSLVVVAGLDLIRDWQLAYAEGLKKA 312
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.89A {Listeria innocua}
Length = 349
Score = 22.7 bits (48), Expect = 10.0
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 31 MIEDAMLRDQIERYNQRLRDAYLGFRYK 58
+ DA LR + + + YL + +
Sbjct: 54 VRLDAYLRTKKQADLEVAEKTYLHNKNR 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.144 0.469
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,050,655
Number of extensions: 47379
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 24
Length of query: 58
Length of database: 6,701,793
Length adjustment: 30
Effective length of query: 28
Effective length of database: 5,864,163
Effective search space: 164196564
Effective search space used: 164196564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)