RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy455
         (58 letters)



>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 134

 Score = 72.2 bits (177), Expect = 4e-19
 Identities = 23/33 (69%), Positives = 30/33 (90%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIE 33
           +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  E
Sbjct: 102 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQE 134


>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli
          [TaxId: 562]}
          Length = 97

 Score = 23.2 bits (50), Expect = 1.6
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)

Query: 31 MIEDAMLRDQIERYNQRLRDA 51
          MIED M  ++I+     L +A
Sbjct: 1  MIEDPMENNEIQ---SVLMNA 18


>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase
          {Rhodococcus erythropolis [TaxId: 1833]}
          Length = 197

 Score = 22.1 bits (47), Expect = 4.7
 Identities = 2/22 (9%), Positives = 9/22 (40%)

Query: 27 EEKAMIEDAMLRDQIERYNQRL 48
          + K ++ D  +    + + +  
Sbjct: 22 DGKGLVPDGYVEGWKKTFEEDF 43


>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 311

 Score = 22.0 bits (45), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 33  EDAMLRDQIERYNQRLRDA 51
           E   LRD+ E + Q LR A
Sbjct: 253 EYDPLRDEGEVFGQMLRRA 271


>d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 150

 Score = 21.7 bits (46), Expect = 7.8
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 27  EEKAMIEDAMLRDQIERYNQRLRDAYLGFRYK 58
           EE + +    L+  IE+   R   A++   Y+
Sbjct: 81  EEVSFVAG-WLKRFIEKGGFRKVVAHVTGGYR 111


>d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis,
           brefeldin A esterase [TaxId: 1423]}
          Length = 358

 Score = 21.7 bits (44), Expect = 8.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 33  EDAMLRDQIERYNQRLRDA 51
           E   LRD+   + +RL  A
Sbjct: 294 ELDPLRDEGIAFARRLARA 312


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.144    0.469 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 258,828
Number of extensions: 9527
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 11
Length of query: 58
Length of database: 2,407,596
Length adjustment: 28
Effective length of query: 30
Effective length of database: 2,023,156
Effective search space: 60694680
Effective search space used: 60694680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)