BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4550
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 123/236 (52%), Gaps = 14/236 (5%)
Query: 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
++Y + +H +F Q + P+ +A+V + +T+ +L+ + + I +G +
Sbjct: 33 AEYPRDKTIHQLFEEQVSKRPNNVAIV-CENEQLTYHELNVKANQLARIFIEKGIGKDTL 91
Query: 67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
VG++ME+ ++ I +A+ KAGG Y+P++ YP ++ +LDD++ +++T+ + +
Sbjct: 92 VGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIH 151
Query: 127 RTSVP-KVKL-ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
+V++ E D + I E LH P D+AY++Y+SGTTG PKG + H+
Sbjct: 152 NIQFNGQVEIFEEDTIK--IREGTNLH---VPSKS-TDLAYVIYTSGTTGNPKGTMLEHK 205
Query: 185 GAVHAYKWRHRAYPYDEDDR--EACNVFF---VWEMLRPLTQGIPMYVISDEVIYD 235
G + + + E DR + ++ F VWEM L G +Y+I + I D
Sbjct: 206 GISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTIND 261
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
A +H +F QA R PD +A++ H+ +T+ L+E + + L+ G G+ VGV
Sbjct: 73 AGACVHELFEAQAARAPDAVALL-HEADELTYGALNERANRLAHRLVGLGVAPGTLVGVH 131
Query: 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
+ER + ++ +A+ KAGGGY L+ +P L L+D +++T RL T+
Sbjct: 132 LERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTT 191
Query: 131 PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
+ +E++ S + N VG +D+A ++++SG+TG+PKG++ PHR Y
Sbjct: 192 --LYVEDEAASDAPAGNLAT------GVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTY 243
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
A +H +F QA R PD +A++ H+ +T+ L+E + + L+ G G+ VGV
Sbjct: 73 AGACVHELFEAQAARAPDAVALL-HEADELTYGALNERANRLAHRLVGLGVAPGTLVGVH 131
Query: 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
+ER + ++ +A+ KAGGGY L+ +P L L+D +++T RL T+
Sbjct: 132 LERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTT 191
Query: 131 PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
+ +E++ S + N VG +D+A ++++SG+TG+PKG++ PHR Y
Sbjct: 192 --LYVEDEAASDAPAGNLAT------GVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTY 243
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 21/223 (9%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
L +FR A P++ A+ D R I++ +LD W+D V L+ +G G V + M
Sbjct: 37 LVSLFREVAATAPERTALSAEDDR-ISYGRLDAWSDAVARTLLAEGVRPGDRVALRMSPG 95
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT---KGEYMDRLERT-SV 130
E ++ +AI K G Y+P++ P + + +L D+ S +I +G + R+ RT +V
Sbjct: 96 AEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGCAVTRVVRTAAV 155
Query: 131 PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
+ K + E P G +D+AY++Y+SGTTG PKG+ H +
Sbjct: 156 AECK-----------DAEPGPVTGAPGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALL 204
Query: 191 KWRHRAYPYDEDDR-----EACNVFFVWEMLRPLTQGIPMYVI 228
+ + DDR F VWE+ + G + V+
Sbjct: 205 AGAPSVFDFSGDDRWLLFHSLSFDFSVWEIWGAFSTGAELVVL 247
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 13/232 (5%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
L Y F+ PD A+ + G+++++++LDE + + L G GS V + +R
Sbjct: 466 LTYWFKEAVNANPDAPALT-YSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRS 524
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
LE I + + KAG YLP++ P + +L D+ + ++T E ++
Sbjct: 525 LELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTT 584
Query: 135 LENDFLSKMISENEKLHNVDFPQVGLD--DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
L F+ E+ + P +D D AYI+Y+SGTTGKPKG + H K
Sbjct: 585 L---FIDDQTRFEEQASD---PATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKH 638
Query: 193 RHRAYPYDEDDREACNVF----FVWEMLRPLTQGIPMYVISDEVIYDPPRLT 240
D+D + + + F ++ + + + + + D RLT
Sbjct: 639 VDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLT 690
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 8/172 (4%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
Q +T V D G T+ QL +D + ++ + + S V V + + ++
Sbjct: 12 QFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATF 71
Query: 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV-KLENDFL 140
+A+ K+G Y+P++ P + ++++ AKPS++I E+ +E S+ + ++E+ L
Sbjct: 72 VALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSEIESAKL 131
Query: 141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
++M E+ H+V DD YI+++SGTTG+PKG+ H + W
Sbjct: 132 AEM--PYERTHSVKG-----DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNW 176
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
P K+A+ G I++ +L V L+ +G VG V E+ +E + Y+A +
Sbjct: 16 PHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVR 75
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
AGG YLPL T+Y L+ + DA+P IV+ D +R + + + + +
Sbjct: 76 AGGVYLPLNTAYTLHELDYFITDAEPKIVV-----CDPSKRDGIAAIAAKVGATVETLGP 130
Query: 147 NEKLHNVDFPQV----------GLDDIAYIVYSSGTTGKPKGIVCPH 183
+ + D G DD+A I+Y+SGTTG+ KG H
Sbjct: 131 DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSH 177
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
P +A+ G I++ +L V L+ +G VG V E +E + Y+A +
Sbjct: 16 PHXLAIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVR 75
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL--------END 138
AGG YLPL T+Y L+ + DA+P IV+ D + +
Sbjct: 76 AGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGS 135
Query: 139 FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
+E +D G DD+A I+Y+SGTTG+ G + H
Sbjct: 136 LTDAAAGASEAFATID---RGADDLAAILYTSGTTGRSXGAMLSH 177
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
P +A+ G I++ +L V L+ +G VG V E +E + Y+A +
Sbjct: 16 PHXLAIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVR 75
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL--------END 138
AGG YLPL T+Y L+ + DA+P IV+ D + +
Sbjct: 76 AGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGS 135
Query: 139 FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
+E +D G DD+A I+Y+SGTTG+ G + H
Sbjct: 136 LTDAAAGASEAFATID---RGADDLAAILYTSGTTGRSXGAMLSH 177
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
P +A+ G I++ +L V L+ +G VG V E +E + Y+A +
Sbjct: 16 PHXLAIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVR 75
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL--------END 138
AGG YLPL T+Y L+ + DA+P IV+ D + +
Sbjct: 76 AGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGS 135
Query: 139 FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
+E +D G DD+A I+Y+SGTTG+ G + H
Sbjct: 136 LTDAAAGASEAFATID---RGADDLAAILYTSGTTGRSXGAMLSH 177
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 9/172 (5%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A TPD+ A V D + IT+KQL E +D + ++ ++ S + V E I+++
Sbjct: 11 AAETPDQTAFVWRDAK-ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
KAG Y+P++ S P ++ + +++ ++++ + T +P + D L
Sbjct: 70 GCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSA----TAVTVTDLPVRIVSEDNLKD 125
Query: 143 MISENEKLHNVDFPQ--VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
+ ++ N P+ V D+ YI+Y+SG+TG PKG+ + V KW
Sbjct: 126 IFFTHKG--NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKW 175
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 9/182 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVD--HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
+ +M R +A +P A V+ D R +T+ Q++ + L G G V +LM
Sbjct: 4 IGWMLRQRATVSPRLQAYVEPSTDVR-MTYAQMNALANRCADVLTALGIAKGDRVALLMP 62
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI---TKGEYMDRLERTS 129
+E+ + K G +P+ T + +L D+ +VI +D + +
Sbjct: 63 NSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA 122
Query: 130 VPKVKLENDFLSKMISENEKLHNVDFPQV--GLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
P + + + ++E + D P V G DD +I+Y+SGTTG PKG+V H +V
Sbjct: 123 DPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE-SV 181
Query: 188 HA 189
H+
Sbjct: 182 HS 183
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 9/172 (5%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A TPD+ A V D + IT+KQL E +D + ++ ++ S + V E I+++
Sbjct: 11 AAETPDQTAFVWRDAK-ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
KAG Y+P++ S P ++ + +++ ++++ + T +P + D L
Sbjct: 70 GCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSA----TAVTVTDLPVRIVSEDNLKD 125
Query: 143 MISENEKLHNVDFPQ--VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
+ ++ N P+ V D+ YI+Y+SG+TG PKG+ + V KW
Sbjct: 126 IFFTHKG--NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKW 175
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 9/182 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVD--HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
+ +M R +A +P A V+ D R +T+ Q++ + L G G V +LM
Sbjct: 18 IGWMLRQRATVSPRLQAYVEPSTDVR-MTYAQMNALANRCADVLTALGIAKGDRVALLMP 76
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI---TKGEYMDRLERTS 129
+E+ + K G +P+ T + +L D+ +VI +D + +
Sbjct: 77 NSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA 136
Query: 130 VPKVKLENDFLSKMISENEKLHNVDFPQV--GLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
P + + + ++E + D P V G DD +I+Y+SGTTG PKG+V H +V
Sbjct: 137 DPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE-SV 195
Query: 188 HA 189
H+
Sbjct: 196 HS 197
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 20/192 (10%)
Query: 14 ALH-YMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
+LH Y+F+N ++ + G T+ + + + G V +L+
Sbjct: 62 SLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLP 121
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL------- 125
C E+ +S++A G + PA + + ++IT+ Y+D++
Sbjct: 122 NCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD 181
Query: 126 ----------ERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGK 175
E +P+ L L++ +E ++ +D ++ DD+ + YSSGTTG
Sbjct: 182 GVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEV--IDSVEISPDDVVALPYSSGTTGL 239
Query: 176 PKGIVCPHRGAV 187
PKG++ H+G V
Sbjct: 240 PKGVMLTHKGLV 251
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 11/185 (5%)
Query: 1 MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQG 60
M +L D A + F A P + A+ D G S+ ++QL + + + YL+
Sbjct: 15 MSQNSLLDLYAHPTVVARFSEMAALHPHREAIRDRFG-SVDYRQLLDSAEQLSDYLLEHY 73
Query: 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120
G +GV E E +AI +G YL ++ P A + +++
Sbjct: 74 PQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILD--- 130
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
T P L + + + +V P D IAYI +SSGTTG+PK I
Sbjct: 131 ----CSTTPTPANGLPCVPVRHLPAAPA---SVARPCFAADQIAYINFSSGTTGRPKAIA 183
Query: 181 CPHRG 185
C H G
Sbjct: 184 CTHAG 188
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
T+K+L+E + V +I + G + V ++R L + I K+G Y+P+E P
Sbjct: 57 TYKKLNETANQVANLII-HASLHGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPN 115
Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTSVPKV--KLENDFLSKMISENEKLHNVDFPQV 158
+L D++ + D +E KV F+ + +++ ++P+
Sbjct: 116 DRKSFLLRDSRAAXAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPE- 174
Query: 159 GLDDIAYIVYSSGTTGKPKGI-VCPHRGAVHAYKW 192
LD AY++Y+SG+TG PKG+ V H + + W
Sbjct: 175 NLD--AYLLYTSGSTGTPKGVRVSRHNLSSFSDAW 207
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 15 LHYMFRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
++ M R A R PD A+ V G +T +L + V L G V V+
Sbjct: 4 VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVP 131
+ I+ +A+H+ G PALL L A+ + +I +GE + V
Sbjct: 64 SADVVIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA 114
Query: 132 KVKLEND------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
++ FL ++ + E ++ PQ A+I Y+SGTTG PK + P
Sbjct: 115 DAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIP 174
Query: 183 HRGA 186
R A
Sbjct: 175 QRAA 178
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 15 LHYMFRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
++ M R A R PD A+ V G +T +L + V L G V V+
Sbjct: 4 VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVP 131
+ I+ +A+H+ G PALL L A+ + +I +GE + V
Sbjct: 64 SADVVIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA 114
Query: 132 KVKLEND------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
++ FL ++ + E ++ PQ A+I Y+SGTTG PK + P
Sbjct: 115 DAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIP 174
Query: 183 HRGA 186
R A
Sbjct: 175 QRAA 178
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 15 LHYMFRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
++ M R A R PD A+ V G +T +L + V L G V V+
Sbjct: 4 VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVP 131
+ I+ +A+H+ G PALL L A+ + +I +GE + V
Sbjct: 64 SADVVIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA 114
Query: 132 KVKLEND------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
++ FL ++ + E ++ PQ A+I Y+SGTTG PK + P
Sbjct: 115 DAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIP 174
Query: 183 HRGA 186
R A
Sbjct: 175 QRAA 178
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 15 LHYMFRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
++ M R A R PD A+ V G +T +L + V L G V V+
Sbjct: 4 VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVP 131
+ I+ +A+H+ G PALL L A+ + +I +GE + V
Sbjct: 64 SADVVIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA 114
Query: 132 KVKLEND------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
++ FL ++ + E ++ PQ A+I Y+SGTTG PK + P
Sbjct: 115 DAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIP 174
Query: 183 HRGA 186
R A
Sbjct: 175 QRAA 178
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 15 LHYMFRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
++ M R A R PD A+ V G +T +L + V L G V V+
Sbjct: 4 VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVP 131
+ I+ +A+H+ G PALL L A+ + +I +GE + V
Sbjct: 64 SADVVIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA 114
Query: 132 KVKLEND------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
++ FL ++ + E ++ PQ A+I Y+SGTTG PK + P
Sbjct: 115 DAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIP 174
Query: 183 HRGA 186
R A
Sbjct: 175 QRAA 178
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 13/194 (6%)
Query: 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87
D IAV+D + R +++++L++ D + L QG G T V + E I++ A+ K
Sbjct: 40 DSIAVIDGE-RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98
Query: 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-----DRL-----ERTSVPKVKLEN 137
G + S+ + L + +P+++I ++ D L E +S+ V+L N
Sbjct: 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLN 158
Query: 138 DFLSKMISENEKLHNVDFPQVG--LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR 195
D + + DF D++AY S GTTG PK I H ++ +
Sbjct: 159 DSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218
Query: 196 AYPYDEDDREACNV 209
+ + R C +
Sbjct: 219 ICQFTQQTRYLCAI 232
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 21/180 (11%)
Query: 19 FRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
R A R PD A+ V G +T +L + V L G V V+ +
Sbjct: 8 LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVPKVKL 135
I+ +A+H+ G PALL L A+ + +I +GE + V
Sbjct: 68 VIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAIF 118
Query: 136 END------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
++ FL ++ + E ++ PQ A+I Y+SGTTG PK + P R A
Sbjct: 119 QSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAA 178
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
+ T++QLD+ + L +G G V +L L +++ AG +P+
Sbjct: 39 ETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI--- 95
Query: 98 YPPALLESVLDDA-------KPSIVITKGEYMDRL---------ERTSVPKVKLENDFLS 141
YPPA E +LD A KP IV+ +++ + + +P + LE+ L+
Sbjct: 96 YPPAQ-EKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIPAIALESIELN 154
Query: 142 KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
+ S + +DIA++ Y+SG+T PKG+ H
Sbjct: 155 RSSSWQPT-------SIKSNDIAFLQYTSGSTXHPKGVXVSHHN 191
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
P +A++ + R +++ +LD + + T L +G G T V + E+ I + A+ K
Sbjct: 44 PHSLAIICGE-RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLK 102
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVI--------TKGEYMDRLERTSV-PKVKL-- 135
AG L S+ L + + +P ++I + +++D L ++ P++ L
Sbjct: 103 AGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILML 162
Query: 136 ---ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
DF E VDF D++A+ S G+TG PK I H
Sbjct: 163 NHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTH 213
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 8/181 (4%)
Query: 15 LH-YMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
LH Y+ N + + + +G T+ ++ V + L G G + + +
Sbjct: 24 LHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS 83
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE---RTSV 130
E+ ++++ G PA L ++ ++IT+ Y ++++ R S
Sbjct: 84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143
Query: 131 PKVKLENDFLSKMI--SENEKLHNVDFPQVGL--DDIAYIVYSSGTTGKPKGIVCPHRGA 186
KV + + SE + + PQV + DD+ + YSSGTTG PKG++ H+G
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGL 203
Query: 187 V 187
+
Sbjct: 204 I 204
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 37 GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
G ++ + E + +G L N G +V + + E C E+ I IA G G P
Sbjct: 50 GVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE 109
Query: 97 SYPPALLESVLDDAKPSIVITKGEYMDRL--ERTSVPKVKL------ENDF-----LSKM 143
Y L L +KP+IV + + +D++ + +V +K + D+ L
Sbjct: 110 IYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTF 169
Query: 144 ISENE--KLHNVDFPQVGLD---DIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
I N F V +D +A I+ SSG+TG PKG+ H V +
Sbjct: 170 IKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 37 GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
G ++ + E + +G L N G +V + + E C E+ I IA G G P
Sbjct: 50 GVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE 109
Query: 97 SYPPALLESVLDDAKPSIVITKGEYMDRL--ERTSVPKVKL------ENDF-----LSKM 143
Y L L +KP+IV + + +D++ + +V +K + D+ L
Sbjct: 110 IYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTF 169
Query: 144 ISENE--KLHNVDFPQVGLD---DIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
I N F V +D +A I+ SSG+TG PKG+ H V +
Sbjct: 170 IKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 34/191 (17%)
Query: 22 QAKRTPDKIAVVDH-----DGRSITFKQL-DEWTDIVGTYLINQGCIVGSTVGVLMERCL 75
A +TP+K A++ G SIT+K+L +E + + G G TV V M
Sbjct: 91 HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP 150
Query: 76 EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE--------------- 120
E I+ +AI + G + + + L ++D +VIT E
Sbjct: 151 EAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVD 210
Query: 121 ----------YMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLD--DIAYIVY 168
++ +T+ P V +E +K + +P +D D +++Y
Sbjct: 211 DALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKK-YKTYYPCTPVDSEDPLFLLY 269
Query: 169 SSGTTGKPKGI 179
+SG+TG PKG+
Sbjct: 270 TSGSTGAPKGV 280
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 23 AKRTPDKIAVVDHDGR-------SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75
A++ +K A++ + + S F ++ E T + + + +G G VGV + +
Sbjct: 29 AEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSI 88
Query: 76 EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR----LERTSVP 131
++ + A+ + +P+ Y LE +L+D++ + ++ + LE+T V
Sbjct: 89 DYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENFKPVLEKTGVE 148
Query: 132 KVKLENDFLSKMISENEKLHNVDFPQVGL---DDIAYIVYSSGTTGKPKGIVCPH 183
+V + ++ + SE + DF V + +D+A I Y+ GTTG PKG+ H
Sbjct: 149 RVFVVGGEVNSL-SEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTH 202
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
L ++R A PD+ A + DG +T + + + + L+ G G V +L + C
Sbjct: 8 LADVYRRNAALFPDRTAFM-VDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNC 66
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----S 129
E A+ G LP+ + VL D PS+V+ +Y D +
Sbjct: 67 SEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG 126
Query: 130 VPKVKLENDFLSKMISENEKLHNVDF--PQVGLDDIAYIVYSSGTTGKPKGIV 180
V K D + + F P+ G D I++++ G+P+G +
Sbjct: 127 VKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGAL 179
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL----- 94
+ ++ L + L++ G V ++ E E+ ++ A AG +PL
Sbjct: 49 LEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXG 108
Query: 95 --ETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS--VPKVKLENDFLSKMISENEKL 150
+ A L+ +L +P+ +IT E++ + + P++ + + K + E +
Sbjct: 109 VGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALPEADVA 168
Query: 151 HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
P +DIAY+ Y+SG+T P+G++ HR
Sbjct: 169 LQRPVP----NDIAYLQYTSGSTRFPRGVIITHR 198
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 37 GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
G ++ + E + +G L N G +V + + E C E+ I IA G G P
Sbjct: 50 GVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE 109
Query: 97 SYPPALLESVLDDAKPSIVITKGEYMDRL--ERTSVPKVKL------ENDF-----LSKM 143
Y L L +KP+IV + + +D++ + +V +K + D+ L
Sbjct: 110 IYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTF 169
Query: 144 ISENE--KLHNVDFPQVGLD---DIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
I N F V +D +A I+ SSG+TG PKG+ H V +
Sbjct: 170 IKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 21/183 (11%)
Query: 17 YMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
Y+FR R K A +D G S T+ +L+E + L G + ++M +
Sbjct: 28 YLFRLNETRA-GKTAYIDDTG-STTYGELEERARRFASALRTLGVHPEERILLVMLDTVA 85
Query: 77 WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLE 136
++++ AG + T PA +L + VI G + + + E
Sbjct: 86 LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQA---LESAE 142
Query: 137 NDFLSKMIS---ENEKLHNVDFPQV-------------GLDDIAYIVYSSGTTGKPKGIV 180
+D ++S E+E F ++ G DDIA+ +YSSG+TGKPKG V
Sbjct: 143 HDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTV 202
Query: 181 CPH 183
H
Sbjct: 203 HTH 205
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 23/183 (12%)
Query: 34 DHDGRSITF--KQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91
D DG +IT QL T V L G G V + + LE+ ++++ +AG
Sbjct: 51 DWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIA 109
Query: 92 LPLETSYPPALL-----ESVLDDAKPSIVITKGEYMD-------RLERTSVPKVKLENDF 139
+PL S P + +SVL D+ P ++T +D R S P + +E D
Sbjct: 110 VPL--SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSI-IEVDL 166
Query: 140 LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPY 199
L ++P AY+ Y+SG+T P G+V H+ ++ Y
Sbjct: 167 LDLDAPNGYTFKEDEYPST-----AYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFA 221
Query: 200 DED 202
D D
Sbjct: 222 DTD 224
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 23/183 (12%)
Query: 34 DHDGRSITF--KQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91
D DG +IT QL T V L G G V + + LE+ ++++ +AG
Sbjct: 51 DWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIA 109
Query: 92 LPLETSYPPALL-----ESVLDDAKPSIVITKGEYMD-------RLERTSVPKVKLENDF 139
+PL S P + +SVL D+ P ++T +D R S P + +E D
Sbjct: 110 VPL--SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSI-IEVDL 166
Query: 140 LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPY 199
L ++P AY+ Y+SG+T P G+V H+ ++ Y
Sbjct: 167 LDLDAPNGYTFKEDEYPST-----AYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFA 221
Query: 200 DED 202
D D
Sbjct: 222 DTD 224
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 36 DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVG-VLMERCLE--WTISYIAIHKAGGGYL 92
G+S+T+++L E +D + Q I G +L+ +E +S++ KAG Y+
Sbjct: 23 QGQSLTYQELWEQSDRAAAAI--QKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80
Query: 93 PLETSYPPALLESVLDDAKPSIVI-TKGEYMDRLERTSVPKVKLENDFLSKMISENEKLH 151
P++ S P + +++ + ++I G +D + + + V E + ENE
Sbjct: 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ-QIQTVSAEE------LLENEGGS 133
Query: 152 NVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
V + YI+Y+SG+TG PKG+
Sbjct: 134 VSQDQWVKEHETFYIIYTSGSTGNPKGV 161
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 156 PQVGLDD--IAYIVYSSGTTGKPKGIVCPHR 184
P+ G DD A +VY+SGTTG PKG V P R
Sbjct: 148 PEDGADDGDPALVVYTSGTTGPPKGAVIPRR 178
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 30/205 (14%)
Query: 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVG 64
L D A LH + A P IA D H +IT+ + E + + + G
Sbjct: 17 LEDGTAGEQLHKAMKRYA-LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTN 75
Query: 65 STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124
+ V E L++ + + G P Y L + ++ ++P++V + + +
Sbjct: 76 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQK 135
Query: 125 LERTSVPKVKLENDFLSKMISENEK--------------------LHNVDFPQVGLD--- 161
+ V+ + + K+I + K + DF D
Sbjct: 136 -----ILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDK 190
Query: 162 DIAYIVYSSGTTGKPKGIVCPHRGA 186
IA I+ SSG+TG PKG+ PHR A
Sbjct: 191 TIALIMNSSGSTGLPKGVALPHRTA 215
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 30/205 (14%)
Query: 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVG 64
L D A LH + A P IA D H +IT+ + E + + + G
Sbjct: 17 LEDGTAGEQLHKAMKRYA-LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTN 75
Query: 65 STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124
+ V E L++ + + G P Y L + ++ ++P++V + + +
Sbjct: 76 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQK 135
Query: 125 LERTSVPKVKLENDFLSKMISENEK--------------------LHNVDFPQVGLD--- 161
+ V+ + + K+I + K + DF D
Sbjct: 136 -----ILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDK 190
Query: 162 DIAYIVYSSGTTGKPKGIVCPHRGA 186
IA I+ SSG+TG PKG+ PHR A
Sbjct: 191 TIALIMNSSGSTGLPKGVALPHRTA 215
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 30/205 (14%)
Query: 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVG 64
L D A LH + A P IA D H +IT+ + E + + + G
Sbjct: 22 LEDGTAGEQLHKAMKRYA-LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTN 80
Query: 65 STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124
+ V E L++ + + G P Y L + ++ ++P++V + + +
Sbjct: 81 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQK 140
Query: 125 LERTSVPKVKLENDFLSKMISENEK--------------------LHNVDFPQVGLD--- 161
+ V+ + + K+I + K + DF D
Sbjct: 141 -----ILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDK 195
Query: 162 DIAYIVYSSGTTGKPKGIVCPHRGA 186
IA I+ SSG+TG PKG+ PHR A
Sbjct: 196 TIALIMNSSGSTGLPKGVALPHRTA 220
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 32/217 (14%)
Query: 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVG 64
L D A LH + A P IA D H +IT+ + E + + + G
Sbjct: 22 LEDGTAGEQLHKAMKRYA-LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTN 80
Query: 65 STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124
+ V E L++ + + G P Y L + ++ ++P++V + + +
Sbjct: 81 HRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQK 140
Query: 125 LERTSVPKVKLENDFLSKMISENEK--------------------LHNVDFPQVGLD--- 161
+ V+ + + K+I + K + DF D
Sbjct: 141 -----ILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDK 195
Query: 162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP 198
IA I+ SSG+TG PKG+ PHR A ++ H P
Sbjct: 196 TIALIMNSSGSTGLPKGVALPHRAL--AVRFSHARDP 230
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 31/172 (18%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
+ I++++L L++ G G V + M E ++ +A + G + +
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 98 YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK--------MISENEK 149
+ P + + D+ +VIT E + R R S+P K +D L +I
Sbjct: 166 FSPEAVAGCIIDSSSRLVITADEGV-RAGR-SIPLKKNVDDALKNPNVTSVEHVIVLKRT 223
Query: 150 LHNVDFPQ---------------------VGLDDIAYIVYSSGTTGKPKGIV 180
++D+ + + +D +I+Y+SG+TGKPKG++
Sbjct: 224 GSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVL 275
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 31/172 (18%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
+ I++++L L++ G G V + M E ++ +A + G + +
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 98 YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK--------MISENEK 149
+ P + + D+ +VIT E + R R S+P K +D L +I
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGV-RAGR-SIPLKKNVDDALKNPNVTSVEHVIVLKRT 223
Query: 150 LHNVDFPQ---------------------VGLDDIAYIVYSSGTTGKPKGIV 180
++D+ + + +D +I+Y+SG+TGKPKG++
Sbjct: 224 GSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVL 275
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 31/172 (18%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
+ I++++L L++ G G V + M E ++ +A + G + +
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 98 YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK--------MISENEK 149
+ P + + D+ +VIT E + R R S+P K +D L +I
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGV-RAGR-SIPLKKNVDDALKNPNVTSVEHVIVLKRT 223
Query: 150 LHNVDFPQ---------------------VGLDDIAYIVYSSGTTGKPKGIV 180
++D+ + + +D +I+Y+SG+TGKPKG++
Sbjct: 224 GSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVL 275
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 31/172 (18%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
+ I++++L L++ G G V + M E ++ +A + G + +
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 98 YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK--------MISENEK 149
+ P + + D+ +VIT E + R R S+P K +D L +I
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGV-RAGR-SIPLKKNVDDALKNPNVTSVEHVIVLKRT 223
Query: 150 LHNVDFPQ---------------------VGLDDIAYIVYSSGTTGKPKGIV 180
++D+ + + +D +I+Y+SG+TGKPKG++
Sbjct: 224 GSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVL 275
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 31/172 (18%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
+ I++++L L++ G G V + M E ++ +A + G + +
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 98 YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK--------MISENEK 149
+ P + + D+ +VIT E + R R S+P K +D L +I
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGV-RAGR-SIPLKKNVDDALKNPNVTSVEHVIVLKRT 223
Query: 150 LHNVDFPQ---------------------VGLDDIAYIVYSSGTTGKPKGIV 180
++D+ + + +D +I+Y+SG+TGKPKG++
Sbjct: 224 GSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVL 275
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 31/172 (18%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
+ I++++L L++ G G V + M E ++ +A + G + +
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 98 YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK--------MISENEK 149
+ P + + D+ +VIT E + R R S+P K +D L +I
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGV-RAGR-SIPLKKNVDDALKNPNVTSVEHVIVLKRT 223
Query: 150 LHNVDFPQ---------------------VGLDDIAYIVYSSGTTGKPKGIV 180
++D+ + + +D +I+Y+SG+TGKPKG++
Sbjct: 224 GSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVL 275
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 31/172 (18%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
+ I++++L L++ G G V + M E ++ +A + G + +
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 98 YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK--------MISENEK 149
+ P + + D+ +VIT E + S+P K +D L +I
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVR--AGASIPLKKNVDDALKNPNVTSVEHVIVLKRT 223
Query: 150 LHNVDFPQ---------------------VGLDDIAYIVYSSGTTGKPKGIV 180
++D+ + + +D +I+Y+SG+TGKPKG++
Sbjct: 224 GSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVL 275
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 21/176 (11%)
Query: 23 AKRTPDKIAVV---DHDGRSI-TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
A+ +P+K+A++ D+ I TFK L ++D + + G G V + ++ ++
Sbjct: 66 ARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125
Query: 79 ISYIAIHKAGGGYLP----LETS-----YPPALLESVLDDAKPSIVITKGEYMDRLERTS 129
+ +HK G +P L+T A L+ ++ A+ + E
Sbjct: 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIP 185
Query: 130 VPKVKLENDFLS------KMISENEKLHNVDFPQVGL--DDIAYIVYSSGTTGKPK 177
+ K K+ D L K + E+ + +V +DI + +SSGT G PK
Sbjct: 186 LKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK 241
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 16 HYMFRNQAKRTPDKIAV--VDHDGRSI--TFKQLDEWTDIVGTYLINQ-GCIVGSTVGVL 70
H+ +A + P A+ V+ G+ + F++L E + L G G V V+
Sbjct: 46 HWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVV 105
Query: 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
+ R EW + + +AG ++P + L +K ++ E + ++ +
Sbjct: 106 LPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS 165
Query: 131 PKVKLENDFL------------SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPK 177
L L K+++E H+ + G + + I ++SGT+G PK
Sbjct: 166 ECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHC--VETGSQEASAIYFTSGTSGLPK 222
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 16 HYMFRNQAKRTPDKIAV--VDHDGRSI--TFKQLDEWTDIVGTYLINQ-GCIVGSTVGVL 70
H+ +A + P A+ V+ G+ + F++L E + L G G V V+
Sbjct: 46 HWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVV 105
Query: 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
+ R EW + + +AG ++P + L +K ++ E + ++ +
Sbjct: 106 LPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS 165
Query: 131 PKVKLENDFL------------SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPK 177
L L K+++E H+ + G + + I ++SGT+G PK
Sbjct: 166 ECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHC--VETGSQEASAIYFTSGTSGLPK 222
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 166 IVYSSGTTGKPKGIVCPHRGAV 187
+ Y++GTTG PKG+V HR V
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALV 202
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
++ D ++ + E N+ LDDIA I+++SGTTG K +
Sbjct: 137 IQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAV 181
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122
G Y P SY AL+ + LD KP I +G +
Sbjct: 87 GAYFPPRDSYEIALVRAALDAGKPIFAICRGXQL 120
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKL 150
Y+D+LE + + K EN FLS +IS+++ L
Sbjct: 434 YLDKLEPSKI--TKFENAFLSHVISQHQAL 461
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKL 150
Y+D+LE + + K EN FLS +IS+++ L
Sbjct: 421 YLDKLEPSKI--TKFENAFLSHVISQHQAL 448
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKL 150
Y+D+LE + + K EN FLS +IS+++ L
Sbjct: 495 YLDKLEPSKI--TKFENAFLSHVISQHQAL 522
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKL 150
Y+D+LE + + K EN FLS +IS+++ L
Sbjct: 452 YLDKLEPSKI--TKFENAFLSHVISQHQAL 479
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKL 150
Y+D+LE + + K EN FLS +IS+++ L
Sbjct: 452 YLDKLEPSKI--TKFENAFLSHVISQHQAL 479
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKL 150
Y+D+LE + + K EN FLS +IS+++ L
Sbjct: 452 YLDKLEPSKI--TKFENAFLSHVISQHQAL 479
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 11/184 (5%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ R++A + D+IA+ + ++++LD D + G V V + E+
Sbjct: 30 LLRDRAAKYGDRIAITCGNTH-WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
A+ + G + S+ + + + A+ + I Y R+ +V+ +
Sbjct: 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKL 148
Query: 138 DFLSKMISENEK--------LHN--VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
L +I E LH V P+V D+A++ S G+TG K I H +
Sbjct: 149 PTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYI 208
Query: 188 HAYK 191
++ K
Sbjct: 209 YSLK 212
>pdb|3BO0|A Chain A, Ribosome-Secy Complex
pdb|3BO1|A Chain A, Ribosome-Secy Complex
pdb|3KCR|A Chain A, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 3kc4
Length = 442
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+KI V+ + ITFK+ +WT IV GCI T G + E+
Sbjct: 8 EKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEF 57
>pdb|1RHZ|A Chain A, The Structure Of A Protein Conducting Channel
Length = 436
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+KI V+ + ITFK+ +WT IV GCI T G + E+
Sbjct: 9 EKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEF 58
>pdb|3DKN|A Chain A, Sec61 In The Canine Ribosome-Channel Complex From The
Endoplasmic Reticulum
Length = 430
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+KI V+ + ITFK+ +WT IV GCI T G + E+
Sbjct: 8 EKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEF 57
>pdb|1RH5|A Chain A, The Structure Of A Protein Conducting Channel
Length = 436
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+KI V+ + ITFK+ +WT IV GCI T G + E+
Sbjct: 9 EKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEF 58
>pdb|2YXQ|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed
State Of The Translocation Channel And Maintains A
Membrane Seal
Length = 431
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+KI V+ + ITFK+ +WT IV GCI T G + E+
Sbjct: 9 EKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEF 58
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 11/184 (5%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ R++A + D+IA+ + ++++LD D + G V V + E+
Sbjct: 30 LLRDRAAKYGDRIAITCGNTH-WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
A+ + G + S+ + + + A+ + I Y R+ +V+ +
Sbjct: 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKL 148
Query: 138 DFLSKMISENEK--------LHN--VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
L +I E LH V P+V D+A++ S G+TG K I H +
Sbjct: 149 PTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYI 208
Query: 188 HAYK 191
++ K
Sbjct: 209 YSLK 212
>pdb|2YXR|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed
State Of The Translocation Channel And Maintains A
Membrane Seal
Length = 426
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCI 62
+KI V+ + ITFK+ +WT IV GCI
Sbjct: 9 EKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCI 43
>pdb|1S0L|A Chain A, Interleukin 1 Beta Mutant F42w
Length = 153
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 68 GVLMERCLEWTISYIAIHKAGGGY-LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
G ME+ + W++S++ ++ + L L VL D KP++ ++ ++
Sbjct: 33 GQDMEQQVVWSMSFVQGEESNDKIPVALGLKEKNLYLSCVLKDDKPTL------QLESVD 86
Query: 127 RTSVPKVKLENDFLSKMISENEKL--HNVDFP 156
+ PK K+E F+ I N KL + FP
Sbjct: 87 PKNYPKKKMEKRFVFNKIEINNKLEFESAQFP 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,392,993
Number of Sequences: 62578
Number of extensions: 366078
Number of successful extensions: 840
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 84
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)