Query psy4550
Match_columns 251
No_of_seqs 147 out of 1167
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 19:56:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1177|consensus 100.0 5.4E-37 1.2E-41 247.3 19.2 237 11-249 48-326 (596)
2 PLN02614 long-chain acyl-CoA s 100.0 7.3E-36 1.6E-40 265.1 24.5 237 9-250 41-318 (666)
3 COG0318 CaiC Acyl-CoA syntheta 100.0 1.5E-35 3.3E-40 257.1 24.7 239 9-249 7-266 (534)
4 PLN02736 long-chain acyl-CoA s 100.0 1.3E-35 2.8E-40 263.6 23.5 237 8-249 39-310 (651)
5 PLN02861 long-chain-fatty-acid 100.0 2.7E-35 5.9E-40 261.5 23.8 235 10-250 40-315 (660)
6 PLN02860 o-succinylbenzoate-Co 100.0 6.9E-35 1.5E-39 255.2 22.5 236 11-250 5-263 (563)
7 PTZ00342 acyl-CoA synthetase; 100.0 1.6E-34 3.6E-39 257.1 24.4 240 7-250 55-396 (746)
8 PRK07788 acyl-CoA synthetase; 100.0 1.7E-34 3.7E-39 252.1 23.3 233 13-250 49-298 (549)
9 PRK08279 long-chain-acyl-CoA s 100.0 1.3E-34 2.8E-39 255.2 22.5 235 11-249 35-290 (600)
10 COG1022 FAA1 Long-chain acyl-C 100.0 2E-34 4.3E-39 247.0 22.6 239 9-250 12-282 (613)
11 KOG1179|consensus 100.0 1.1E-34 2.4E-39 238.2 19.4 237 11-250 75-334 (649)
12 COG0365 Acs Acyl-coenzyme A sy 100.0 2.5E-34 5.4E-39 243.1 21.9 229 18-249 14-266 (528)
13 PRK06334 long chain fatty acid 100.0 3E-34 6.5E-39 249.7 23.1 237 9-250 15-276 (539)
14 PRK08180 feruloyl-CoA synthase 100.0 6.7E-34 1.5E-38 251.1 24.2 238 10-249 36-306 (614)
15 PLN02246 4-coumarate--CoA liga 100.0 1.9E-33 4.1E-38 244.9 25.0 239 8-249 18-274 (537)
16 PRK06155 crotonobetaine/carnit 100.0 9.6E-34 2.1E-38 246.9 22.9 235 11-249 19-270 (542)
17 PRK07529 AMP-binding domain pr 100.0 2.2E-33 4.8E-38 248.5 24.9 241 7-249 19-310 (632)
18 PRK07638 acyl-CoA synthetase; 100.0 3.2E-33 6.9E-38 240.8 25.1 227 14-249 2-233 (487)
19 PLN02654 acetate-CoA ligase 100.0 1.7E-33 3.6E-38 250.3 23.6 233 15-249 90-371 (666)
20 TIGR02316 propion_prpE propion 100.0 2.8E-33 6.1E-38 247.8 24.5 236 14-250 53-329 (628)
21 PRK03640 O-succinylbenzoic aci 100.0 3.9E-33 8.4E-38 239.9 24.5 227 12-250 1-232 (483)
22 PRK13388 acyl-CoA synthetase; 100.0 2.3E-33 5.1E-38 244.3 23.1 229 13-249 3-241 (540)
23 PLN02387 long-chain-fatty-acid 100.0 2.2E-33 4.7E-38 250.4 23.3 239 10-249 55-349 (696)
24 PRK12467 peptide synthase; Pro 100.0 1E-33 2.2E-38 286.4 23.4 233 10-250 3092-3330(3956)
25 PRK08314 long-chain-fatty-acid 100.0 3.8E-33 8.3E-38 243.4 24.1 235 12-250 9-282 (546)
26 PRK13382 acyl-CoA synthetase; 100.0 3.1E-33 6.7E-38 243.5 23.3 230 13-250 43-287 (537)
27 PLN03052 acetate--CoA ligase; 100.0 5.8E-33 1.2E-37 248.1 25.4 231 17-249 179-447 (728)
28 PRK10252 entF enterobactin syn 100.0 2.5E-33 5.3E-38 265.9 24.3 230 13-250 458-692 (1296)
29 PRK05852 acyl-CoA synthetase; 100.0 3.3E-33 7.2E-38 243.2 23.0 249 1-250 4-270 (534)
30 PLN03102 acyl-activating enzym 100.0 5.6E-33 1.2E-37 243.7 24.6 232 13-249 14-276 (579)
31 PRK12467 peptide synthase; Pro 100.0 1.5E-33 3.2E-38 285.3 23.7 237 9-250 1570-1812(3956)
32 PRK12582 acyl-CoA synthetase; 100.0 4.1E-33 8.9E-38 246.6 23.6 243 5-249 41-318 (624)
33 PLN02330 4-coumarate--CoA liga 100.0 7E-33 1.5E-37 241.7 24.8 236 9-249 24-277 (546)
34 TIGR03443 alpha_am_amid L-amin 100.0 1.9E-33 4.1E-38 267.9 22.3 238 13-250 236-509 (1389)
35 PRK08043 bifunctional acyl-[ac 100.0 3.4E-33 7.3E-38 250.5 22.4 236 11-249 202-457 (718)
36 PRK13295 cyclohexanecarboxylat 100.0 7.4E-33 1.6E-37 241.7 23.9 235 12-249 23-288 (547)
37 PRK05857 acyl-CoA synthetase; 100.0 4.8E-33 1E-37 242.4 21.6 235 11-249 12-262 (540)
38 KOG1176|consensus 100.0 4.2E-33 9.1E-38 236.8 20.3 222 25-250 28-276 (537)
39 PRK04319 acetyl-CoA synthetase 100.0 1.1E-32 2.3E-37 241.7 23.5 233 13-250 43-298 (570)
40 PRK07656 long-chain-fatty-acid 100.0 1.1E-32 2.5E-37 238.6 23.3 233 11-249 3-257 (513)
41 PRK12316 peptide synthase; Pro 100.0 5.1E-33 1.1E-37 285.2 24.4 237 9-250 507-749 (5163)
42 PRK07867 acyl-CoA synthetase; 100.0 1.3E-32 2.8E-37 239.1 23.4 232 10-249 2-243 (529)
43 PRK08008 caiC putative crotono 100.0 1.5E-32 3.3E-37 238.2 23.4 236 11-250 5-265 (517)
44 TIGR02188 Ac_CoA_lig_AcsA acet 100.0 1.2E-32 2.5E-37 243.9 23.0 235 14-250 58-333 (625)
45 PLN02430 long-chain-fatty-acid 100.0 1.8E-32 3.9E-37 243.2 24.1 235 10-249 39-314 (660)
46 PTZ00237 acetyl-CoA synthetase 100.0 1.3E-32 2.9E-37 243.8 23.1 237 13-250 59-352 (647)
47 PLN02574 4-coumarate--CoA liga 100.0 1.7E-32 3.7E-37 239.9 23.1 229 16-249 44-294 (560)
48 PRK09274 peptide synthase; Pro 100.0 1.9E-32 4.1E-37 239.3 23.2 235 12-249 5-264 (552)
49 PRK06087 short chain acyl-CoA 100.0 2.6E-32 5.5E-37 238.3 23.8 234 13-249 23-278 (547)
50 PRK06839 acyl-CoA synthetase; 100.0 1.3E-32 2.9E-37 237.3 21.8 228 13-249 2-240 (496)
51 PRK06145 acyl-CoA synthetase; 100.0 3.3E-32 7.2E-37 235.0 24.0 233 12-249 1-240 (497)
52 PRK12316 peptide synthase; Pro 100.0 1.3E-32 2.9E-37 282.1 24.9 235 9-250 1999-2239(5163)
53 PRK06164 acyl-CoA synthetase; 100.0 2.4E-32 5.1E-37 238.2 23.0 238 9-250 6-272 (540)
54 PTZ00216 acyl-CoA synthetase; 100.0 3.3E-32 7.1E-37 243.3 24.2 234 10-249 66-363 (700)
55 TIGR03098 ligase_PEP_1 acyl-Co 100.0 4.3E-32 9.4E-37 235.1 24.1 229 15-250 2-252 (515)
56 PRK06178 acyl-CoA synthetase; 100.0 3.8E-32 8.3E-37 238.1 24.0 233 13-249 33-301 (567)
57 PRK05691 peptide synthase; Val 100.0 8.8E-33 1.9E-37 281.6 22.7 235 9-249 3716-3962(4334)
58 PF00501 AMP-binding: AMP-bind 100.0 4.1E-33 8.9E-38 235.5 17.0 227 19-249 1-249 (417)
59 PRK08316 acyl-CoA synthetase; 100.0 6E-32 1.3E-36 234.6 24.6 234 12-249 10-262 (523)
60 TIGR02275 DHB_AMP_lig 2,3-dihy 100.0 4.7E-32 1E-36 235.6 23.9 231 12-249 22-275 (527)
61 PRK00174 acetyl-CoA synthetase 100.0 4.4E-32 9.6E-37 240.6 24.1 234 15-250 69-342 (637)
62 PRK06060 acyl-CoA synthetase; 100.0 3.9E-32 8.5E-37 243.4 23.8 225 14-249 5-238 (705)
63 PRK12476 putative fatty-acid-- 100.0 1.2E-32 2.5E-37 243.2 19.1 242 1-249 22-290 (612)
64 PRK06187 long-chain-fatty-acid 100.0 7E-32 1.5E-36 234.0 23.2 233 11-250 4-258 (521)
65 PRK07769 long-chain-fatty-acid 100.0 4.9E-32 1.1E-36 240.1 22.1 234 8-248 16-273 (631)
66 PRK08315 AMP-binding domain pr 100.0 1.2E-31 2.6E-36 234.6 24.0 237 11-249 14-291 (559)
67 PTZ00297 pantothenate kinase; 100.0 1.1E-31 2.4E-36 249.0 24.8 236 6-249 420-691 (1452)
68 TIGR01734 D-ala-DACP-lig D-ala 100.0 1.6E-31 3.4E-36 231.0 23.9 229 14-249 1-234 (502)
69 PRK05691 peptide synthase; Val 100.0 5.3E-32 1.2E-36 275.9 24.2 233 10-249 1128-1366(4334)
70 PRK10524 prpE propionyl-CoA sy 100.0 1.4E-31 3E-36 237.2 23.5 235 15-250 55-330 (629)
71 PRK07514 malonyl-CoA synthase; 100.0 2.2E-31 4.8E-36 230.2 23.7 228 13-244 3-242 (504)
72 PRK06188 acyl-CoA synthetase; 100.0 1.7E-31 3.7E-36 232.0 22.9 234 12-249 11-257 (524)
73 TIGR01217 ac_ac_CoA_syn acetoa 100.0 1.1E-31 2.3E-36 238.3 22.1 225 25-250 96-359 (652)
74 PRK07786 long-chain-fatty-acid 100.0 1.3E-31 2.8E-36 233.6 22.2 234 11-249 15-267 (542)
75 PRK03584 acetoacetyl-CoA synth 100.0 1.3E-31 2.9E-36 238.2 22.5 224 25-249 96-357 (655)
76 TIGR03208 cyc_hxne_CoA_lg cycl 100.0 2.5E-31 5.4E-36 231.6 23.1 237 11-250 20-287 (538)
77 PRK12583 acyl-CoA synthetase; 100.0 4E-31 8.6E-36 231.3 24.3 235 13-249 18-293 (558)
78 PRK07798 acyl-CoA synthetase; 100.0 3.9E-31 8.3E-36 230.0 23.7 234 14-249 4-270 (533)
79 PRK05605 long-chain-fatty-acid 100.0 3.7E-31 8E-36 232.2 23.6 233 13-249 32-312 (573)
80 PRK08633 2-acyl-glycerophospho 100.0 2.5E-31 5.5E-36 249.6 23.3 238 10-250 612-875 (1146)
81 PRK10946 entE enterobactin syn 100.0 3.5E-31 7.6E-36 230.6 21.6 229 12-249 24-274 (536)
82 PRK06814 acylglycerophosphoeth 100.0 2.4E-31 5.2E-36 249.5 21.9 237 10-249 628-885 (1140)
83 PRK05620 long-chain-fatty-acid 100.0 7.3E-31 1.6E-35 230.4 23.2 234 13-250 10-275 (576)
84 PRK04813 D-alanine--poly(phosp 100.0 1.1E-30 2.3E-35 225.8 23.8 231 13-250 2-237 (503)
85 PRK13383 acyl-CoA synthetase; 100.0 5.8E-31 1.3E-35 228.2 22.2 227 12-250 34-267 (516)
86 PRK07008 long-chain-fatty-acid 100.0 6.2E-31 1.3E-35 229.2 22.4 233 13-249 10-269 (539)
87 PRK05851 long-chain-fatty-acid 100.0 2E-31 4.4E-36 231.5 18.9 227 15-249 4-247 (525)
88 PRK09192 acyl-CoA synthetase; 100.0 3.2E-31 7E-36 232.7 20.4 238 7-249 15-272 (579)
89 PRK05850 acyl-CoA synthetase; 100.0 2.9E-31 6.3E-36 233.1 19.9 229 14-249 2-261 (578)
90 PLN02479 acetate-CoA ligase 100.0 1.7E-30 3.7E-35 227.6 24.1 238 6-250 13-286 (567)
91 PRK05677 long-chain-fatty-acid 100.0 4.9E-30 1.1E-34 224.6 26.3 234 12-250 23-303 (562)
92 PRK06018 putative acyl-CoA syn 100.0 8.1E-31 1.8E-35 228.6 21.3 235 11-250 8-271 (542)
93 PRK07470 acyl-CoA synthetase; 100.0 2.2E-30 4.8E-35 225.2 22.9 233 13-249 7-256 (528)
94 TIGR02262 benz_CoA_lig benzoat 100.0 3.9E-30 8.4E-35 222.7 23.8 230 15-250 6-255 (508)
95 KOG1256|consensus 100.0 9.2E-31 2E-35 222.4 18.9 237 9-249 71-350 (691)
96 PRK08162 acyl-CoA synthetase; 100.0 5.7E-30 1.2E-34 223.4 24.3 231 13-249 18-272 (545)
97 PRK09088 acyl-CoA synthetase; 100.0 4.1E-30 8.9E-35 221.5 22.4 217 21-249 3-228 (488)
98 PRK07059 Long-chain-fatty-acid 100.0 8.8E-30 1.9E-34 222.8 22.8 235 12-250 22-304 (557)
99 PRK06710 long-chain-fatty-acid 100.0 1.5E-29 3.2E-34 221.7 23.7 234 13-250 24-300 (563)
100 COG1021 EntE Peptide arylation 100.0 1.1E-30 2.3E-35 206.9 14.7 235 12-250 27-282 (542)
101 TIGR03205 pimA dicarboxylate-- 100.0 2.2E-29 4.9E-34 219.5 24.5 234 11-249 19-288 (541)
102 PRK07868 acyl-CoA synthetase; 100.0 8.6E-30 1.9E-34 234.5 22.5 233 10-250 444-697 (994)
103 PRK12492 long-chain-fatty-acid 100.0 2.2E-29 4.8E-34 220.4 23.2 234 13-250 24-310 (562)
104 PRK08751 putative long-chain f 100.0 2.8E-29 6.2E-34 219.7 23.9 233 13-249 25-305 (560)
105 TIGR03089 conserved hypothetic 100.0 7.7E-30 1.7E-34 197.4 17.5 200 19-249 2-227 (227)
106 PRK07768 long-chain-fatty-acid 100.0 1.8E-29 3.9E-34 220.3 20.4 228 13-249 2-248 (545)
107 PRK09029 O-succinylbenzoic aci 100.0 2.9E-29 6.2E-34 214.6 20.9 202 13-230 2-209 (458)
108 PRK13390 acyl-CoA synthetase; 100.0 2.7E-29 5.8E-34 217.1 20.8 225 21-249 5-244 (501)
109 PRK08308 acyl-CoA synthetase; 100.0 3.9E-29 8.5E-34 211.2 19.7 183 35-249 4-192 (414)
110 PRK08974 long-chain-fatty-acid 100.0 1.2E-28 2.7E-33 215.7 23.5 235 12-249 22-301 (560)
111 PRK13391 acyl-CoA synthetase; 100.0 2.2E-28 4.7E-33 211.9 21.8 227 20-249 4-249 (511)
112 PRK07787 acyl-CoA synthetase; 100.0 1.5E-28 3.2E-33 211.0 20.0 203 23-249 10-218 (471)
113 TIGR01733 AA-adenyl-dom amino 100.0 4.8E-28 1E-32 204.0 20.9 208 41-250 1-214 (408)
114 TIGR01923 menE O-succinylbenzo 100.0 1.2E-27 2.7E-32 203.2 18.6 194 41-249 1-199 (436)
115 PRK08276 long-chain-fatty-acid 100.0 2.1E-27 4.5E-32 205.4 20.3 211 34-249 6-236 (502)
116 PRK12406 long-chain-fatty-acid 100.0 2.9E-27 6.3E-32 204.8 18.8 217 30-250 3-246 (509)
117 PRK07445 O-succinylbenzoic aci 100.0 5.6E-27 1.2E-31 199.9 19.9 168 40-230 20-193 (452)
118 KOG1180|consensus 100.0 8.3E-27 1.8E-31 191.6 18.9 226 4-230 32-312 (678)
119 COG1020 EntF Non-ribosomal pep 99.9 7.6E-25 1.7E-29 194.7 22.0 231 10-249 224-459 (642)
120 KOG1175|consensus 99.9 2.3E-24 5E-29 183.8 17.8 221 26-249 78-333 (626)
121 PLN03051 acyl-activating enzym 99.9 1.4E-23 3.1E-28 181.3 15.8 178 71-250 1-211 (499)
122 KOG3628|consensus 99.9 1.4E-19 3E-24 158.8 20.4 237 13-249 770-1038(1363)
123 KOG1178|consensus 99.5 9.9E-14 2.1E-18 124.9 9.1 235 12-249 35-290 (1032)
124 KOG3628|consensus 99.4 3.6E-12 7.8E-17 113.1 9.8 236 12-249 93-363 (1363)
125 TIGR02372 4_coum_CoA_lig 4-cou 99.3 3.8E-12 8.3E-17 106.3 7.2 83 161-246 95-185 (386)
126 PRK07824 O-succinylbenzoic aci 99.3 1.5E-11 3.2E-16 102.2 8.4 90 157-248 31-125 (358)
127 TIGR02155 PA_CoA_ligase phenyl 99.0 1.4E-09 3E-14 92.4 7.4 88 159-249 73-169 (422)
128 TIGR03335 F390_ftsA coenzyme F 98.6 4.3E-08 9.4E-13 83.8 5.8 88 158-250 83-179 (445)
129 COG1541 PaaK Coenzyme F390 syn 96.9 0.0086 1.9E-07 50.5 9.2 84 40-124 110-195 (438)
130 COG1541 PaaK Coenzyme F390 syn 96.8 0.0028 6.2E-08 53.3 5.7 93 155-250 84-185 (438)
131 TIGR02155 PA_CoA_ligase phenyl 93.9 0.62 1.3E-05 39.7 9.6 83 40-123 95-179 (422)
132 TIGR03335 F390_ftsA coenzyme F 93.7 0.78 1.7E-05 39.5 10.0 80 39-121 105-186 (445)
133 TIGR03089 conserved hypothetic 91.3 2 4.2E-05 33.4 8.5 55 57-113 171-227 (227)
134 TIGR02304 aden_form_hyp probab 89.4 0.94 2E-05 38.8 5.6 86 163-249 101-189 (430)
135 PRK06187 long-chain-fatty-acid 88.3 5.1 0.00011 34.9 9.7 83 39-125 186-269 (521)
136 PRK07656 long-chain-fatty-acid 87.8 4.5 9.6E-05 35.2 9.0 83 39-125 185-269 (513)
137 PF04443 LuxE: Acyl-protein sy 87.4 2.1 4.6E-05 35.9 6.3 92 157-250 85-191 (365)
138 PRK08315 AMP-binding domain pr 85.2 8.6 0.00019 34.0 9.5 81 39-122 218-300 (559)
139 PF03321 GH3: GH3 auxin-respon 84.9 0.4 8.7E-06 42.3 0.9 32 157-188 76-108 (528)
140 PLN02565 cysteine synthase 84.4 16 0.00036 30.0 10.1 91 29-120 31-122 (322)
141 TIGR01923 menE O-succinylbenzo 84.3 5.2 0.00011 34.0 7.5 82 39-126 130-212 (436)
142 PRK06334 long chain fatty acid 83.8 18 0.0004 32.0 10.9 97 26-125 181-287 (539)
143 TIGR03098 ligase_PEP_1 acyl-Co 83.8 13 0.00028 32.4 9.9 84 39-126 180-264 (515)
144 PLN03051 acyl-activating enzym 83.8 11 0.00023 33.0 9.3 83 39-124 138-221 (499)
145 KOG1177|consensus 83.6 24 0.00051 30.8 10.6 83 38-123 252-336 (596)
146 PRK12583 acyl-CoA synthetase; 83.0 13 0.00029 32.7 9.8 81 39-122 220-302 (558)
147 PF00501 AMP-binding: AMP-bind 81.1 13 0.00029 31.2 8.8 97 26-126 153-262 (417)
148 PLN02247 indole-3-acetic acid- 80.7 2 4.4E-05 38.3 3.7 29 160-188 88-117 (606)
149 COG0031 CysK Cysteine synthase 80.5 21 0.00045 29.1 8.9 71 48-119 45-116 (300)
150 TIGR01733 AA-adenyl-dom amino 80.3 17 0.00037 30.4 9.2 85 39-126 139-226 (408)
151 PRK03640 O-succinylbenzoic aci 80.2 16 0.00035 31.5 9.1 83 39-125 160-243 (483)
152 PLN02249 indole-3-acetic acid- 80.0 1.4 3.1E-05 39.4 2.5 30 158-187 97-127 (597)
153 PRK06164 acyl-CoA synthetase; 79.2 33 0.0007 30.2 10.8 95 27-125 180-283 (540)
154 PLN02860 o-succinylbenzoate-Co 78.7 27 0.00059 31.0 10.3 96 26-125 170-274 (563)
155 PRK04319 acetyl-CoA synthetase 78.0 19 0.00042 32.0 9.1 84 39-125 224-309 (570)
156 PRK07638 acyl-CoA synthetase; 77.9 25 0.00053 30.5 9.6 84 39-126 162-246 (487)
157 PLN03013 cysteine synthase 77.9 25 0.00054 30.3 9.1 73 48-120 157-230 (429)
158 PRK08316 acyl-CoA synthetase; 77.5 23 0.0005 30.9 9.3 82 39-124 190-273 (523)
159 cd01445 TST_Repeats Thiosulfat 77.0 9.6 0.00021 27.0 5.6 43 50-92 81-126 (138)
160 KOG1179|consensus 76.8 13 0.00029 32.9 7.2 76 40-120 262-340 (649)
161 PRK11761 cysM cysteine synthas 76.5 30 0.00064 28.1 9.0 88 29-119 28-117 (296)
162 PF01041 DegT_DnrJ_EryC1: DegT 76.1 9.5 0.00021 31.9 6.3 64 50-117 51-119 (363)
163 TIGR01139 cysK cysteine syntha 75.4 42 0.00091 27.2 9.8 91 28-120 21-112 (298)
164 PLN02620 indole-3-acetic acid- 75.0 2.7 5.9E-05 37.6 2.8 31 158-188 98-129 (612)
165 PLN02736 long-chain acyl-CoA s 74.9 31 0.00068 31.4 9.7 95 26-125 219-322 (651)
166 TIGR02379 ECA_wecE TDP-4-keto- 73.5 16 0.00035 30.8 7.0 58 56-117 63-125 (376)
167 PRK08314 long-chain-fatty-acid 73.0 55 0.0012 28.8 10.6 94 26-123 188-291 (546)
168 TIGR02262 benz_CoA_lig benzoat 73.0 52 0.0011 28.7 10.4 83 39-123 180-264 (508)
169 PLN02614 long-chain acyl-CoA s 72.9 42 0.0009 30.8 9.9 96 27-125 222-329 (666)
170 COG1022 FAA1 Long-chain acyl-C 72.7 38 0.00082 30.7 9.3 100 24-127 187-295 (613)
171 COG2236 Predicted phosphoribos 72.5 7.7 0.00017 29.3 4.3 33 38-70 5-37 (192)
172 PLN02556 cysteine synthase/L-3 72.2 44 0.00095 28.2 9.2 64 56-119 101-165 (368)
173 PRK06382 threonine dehydratase 71.9 49 0.0011 28.3 9.6 65 55-122 66-130 (406)
174 PLN00011 cysteine synthase 71.9 46 0.001 27.4 9.2 90 29-120 33-124 (323)
175 COG0399 WecE Predicted pyridox 71.6 25 0.00054 29.7 7.5 64 50-117 60-128 (374)
176 PRK05620 long-chain-fatty-acid 71.3 57 0.0012 29.1 10.4 84 39-123 200-284 (576)
177 PRK11706 TDP-4-oxo-6-deoxy-D-g 70.7 21 0.00046 30.0 7.1 58 56-117 63-125 (375)
178 TIGR01136 cysKM cysteine synth 70.4 55 0.0012 26.5 9.3 90 28-120 22-113 (299)
179 PLN02246 4-coumarate--CoA liga 70.1 60 0.0013 28.6 10.2 86 39-125 198-286 (537)
180 PRK09274 peptide synthase; Pro 69.9 19 0.00042 31.8 7.1 87 160-248 20-114 (552)
181 PRK08279 long-chain-acyl-CoA s 69.8 43 0.00093 30.0 9.3 81 39-123 218-300 (600)
182 PRK00174 acetyl-CoA synthetase 69.5 26 0.00056 31.7 7.9 85 159-248 80-171 (637)
183 PRK07788 acyl-CoA synthetase; 68.9 35 0.00075 30.2 8.4 83 39-125 226-309 (549)
184 PRK08043 bifunctional acyl-[ac 68.7 62 0.0014 29.9 10.2 81 39-122 384-466 (718)
185 PRK13295 cyclohexanecarboxylat 68.5 85 0.0018 27.7 11.0 82 39-124 216-299 (547)
186 PLN03052 acetate--CoA ligase; 68.4 56 0.0012 30.4 9.8 85 39-126 375-460 (728)
187 PRK06188 acyl-CoA synthetase; 68.1 49 0.0011 28.9 9.2 82 39-124 187-268 (524)
188 COG0318 CaiC Acyl-CoA syntheta 67.7 89 0.0019 27.7 10.8 98 26-124 169-277 (534)
189 PTZ00237 acetyl-CoA synthetase 67.5 34 0.00073 31.2 8.2 85 160-249 75-166 (647)
190 PRK08308 acyl-CoA synthetase; 67.1 72 0.0016 27.0 9.7 84 39-126 120-205 (414)
191 PRK08633 2-acyl-glycerophospho 66.9 76 0.0016 31.0 10.9 97 26-125 780-886 (1146)
192 TIGR03590 PseG pseudaminic aci 66.8 55 0.0012 26.2 8.5 83 30-119 2-88 (279)
193 PRK10696 tRNA 2-thiocytidine b 65.7 66 0.0014 25.5 10.0 70 50-119 14-95 (258)
194 PRK07476 eutB threonine dehydr 65.1 77 0.0017 26.1 9.6 90 28-121 34-123 (322)
195 PRK10717 cysteine synthase A; 65.1 77 0.0017 26.1 9.2 66 54-120 53-119 (330)
196 COG4009 Uncharacterized protei 64.5 30 0.00065 21.8 4.9 65 39-114 9-76 (88)
197 PRK07529 AMP-binding domain pr 64.4 1E+02 0.0023 27.9 10.7 97 26-125 211-322 (632)
198 PRK11658 UDP-4-amino-4-deoxy-L 64.1 42 0.00091 28.3 7.6 62 51-116 60-126 (379)
199 PRK05852 acyl-CoA synthetase; 64.1 1E+02 0.0022 27.1 11.9 84 39-125 195-281 (534)
200 PRK13388 acyl-CoA synthetase; 63.7 1.1E+02 0.0023 27.1 10.7 91 26-120 148-248 (540)
201 TIGR02275 DHB_AMP_lig 2,3-dihy 63.4 1E+02 0.0023 27.0 10.5 96 26-125 181-287 (527)
202 TIGR01734 D-ala-DACP-lig D-ala 63.0 68 0.0015 27.8 9.0 83 39-124 160-245 (502)
203 cd01449 TST_Repeat_2 Thiosulfa 62.9 22 0.00049 23.9 4.9 41 50-90 64-104 (118)
204 PLN03102 acyl-activating enzym 62.9 28 0.00061 31.1 6.7 68 180-249 39-113 (579)
205 PRK14057 epimerase; Provisiona 61.7 80 0.0017 25.1 8.2 64 51-117 89-162 (254)
206 TIGR03588 PseC UDP-4-keto-6-de 61.7 54 0.0012 27.5 7.9 65 50-117 55-127 (380)
207 PLN02861 long-chain-fatty-acid 61.6 93 0.002 28.5 9.9 97 26-125 218-326 (660)
208 PLN02654 acetate-CoA ligase 61.3 58 0.0013 29.8 8.5 85 159-248 102-193 (666)
209 PRK06839 acyl-CoA synthetase; 61.2 94 0.002 26.8 9.6 83 39-125 168-252 (496)
210 TIGR02188 Ac_CoA_lig_AcsA acet 60.7 48 0.001 29.9 7.9 86 159-249 70-162 (625)
211 PRK10252 entF enterobactin syn 60.5 1E+02 0.0022 30.7 10.6 96 26-124 596-702 (1296)
212 cd06448 L-Ser-dehyd Serine deh 60.3 95 0.0021 25.5 9.8 91 27-120 15-106 (316)
213 PRK07470 acyl-CoA synthetase; 59.8 1.2E+02 0.0026 26.5 10.6 86 39-125 182-268 (528)
214 PRK07239 bifunctional uroporph 59.4 36 0.00077 28.7 6.4 48 64-117 98-148 (381)
215 PRK13383 acyl-CoA synthetase; 59.4 86 0.0019 27.4 9.0 71 54-125 207-278 (516)
216 TIGR01137 cysta_beta cystathio 59.2 1E+02 0.0022 26.7 9.3 90 28-119 26-116 (454)
217 PRK10946 entE enterobactin syn 59.2 1E+02 0.0022 27.1 9.5 83 39-125 201-286 (536)
218 PRK03584 acetoacetyl-CoA synth 59.2 72 0.0016 29.0 8.7 67 59-125 300-369 (655)
219 PRK10595 SOS cell division inh 59.2 59 0.0013 23.9 6.5 66 53-118 70-141 (164)
220 PRK05857 acyl-CoA synthetase; 59.1 40 0.00086 29.8 6.9 68 179-248 40-114 (540)
221 cd01519 RHOD_HSP67B2 Member of 59.0 32 0.00069 22.6 5.0 52 39-90 37-92 (106)
222 PRK09162 hypoxanthine-guanine 58.6 38 0.00083 25.2 5.8 47 37-84 14-60 (181)
223 PF09269 DUF1967: Domain of un 58.5 11 0.00024 23.1 2.4 21 49-69 42-62 (69)
224 PRK06814 acylglycerophosphoeth 58.5 1.3E+02 0.0028 29.5 10.8 96 26-124 791-896 (1140)
225 TIGR03443 alpha_am_amid L-amin 58.2 36 0.00078 34.1 7.1 88 159-248 249-343 (1389)
226 PLN02550 threonine dehydratase 58.1 1.5E+02 0.0032 27.0 11.0 92 27-123 123-215 (591)
227 cd01561 CBS_like CBS_like: Thi 58.0 98 0.0021 24.9 10.1 67 54-121 42-109 (291)
228 TIGR03595 Obg_CgtA_exten Obg f 57.9 14 0.00031 22.6 2.8 19 52-70 45-63 (69)
229 TIGR01138 cysM cysteine syntha 57.8 1E+02 0.0022 25.0 10.2 90 28-119 23-113 (290)
230 PLN02356 phosphateglycerate ki 57.5 1.1E+02 0.0023 26.5 8.8 72 46-118 85-157 (423)
231 PRK07868 acyl-CoA synthetase; 57.1 1.2E+02 0.0025 29.6 10.0 66 59-125 641-708 (994)
232 PRK06381 threonine synthase; V 56.6 50 0.0011 27.1 6.7 89 28-121 31-119 (319)
233 PRK06702 O-acetylhomoserine am 56.2 83 0.0018 27.2 8.0 56 61-118 97-154 (432)
234 PRK09088 acyl-CoA synthetase; 54.9 60 0.0013 28.1 7.3 69 179-249 21-96 (488)
235 KOG0025|consensus 54.7 82 0.0018 25.7 7.1 65 60-124 157-222 (354)
236 PLN02723 3-mercaptopyruvate su 54.5 30 0.00065 28.5 5.0 53 40-92 239-297 (320)
237 PRK11493 sseA 3-mercaptopyruva 54.2 31 0.00068 27.7 5.0 52 39-90 201-257 (281)
238 PRK15407 lipopolysaccharide bi 54.1 70 0.0015 27.7 7.4 55 60-118 107-166 (438)
239 PRK05677 long-chain-fatty-acid 53.7 49 0.0011 29.4 6.6 68 179-248 48-123 (562)
240 PF01276 OKR_DC_1: Orn/Lys/Arg 53.6 1E+02 0.0022 26.6 8.0 58 61-121 103-179 (417)
241 PRK07008 long-chain-fatty-acid 53.0 52 0.0011 29.0 6.6 84 39-124 195-280 (539)
242 cd03466 Nitrogenase_NifN_2 Nit 52.3 1.4E+02 0.003 25.8 8.8 56 63-119 299-358 (429)
243 TIGR00936 ahcY adenosylhomocys 52.3 1.5E+02 0.0033 25.4 9.1 57 61-117 29-87 (406)
244 PRK07867 acyl-CoA synthetase; 52.2 1.7E+02 0.0036 25.8 10.6 78 39-120 171-250 (529)
245 PRK07787 acyl-CoA synthetase; 51.7 1.4E+02 0.003 25.7 9.0 82 39-125 147-230 (471)
246 COG1064 AdhP Zn-dependent alco 51.5 56 0.0012 27.2 6.0 60 56-119 159-218 (339)
247 PRK08091 ribulose-phosphate 3- 51.4 1.2E+02 0.0025 23.8 8.0 65 50-117 81-148 (228)
248 PRK05851 long-chain-fatty-acid 51.2 1.6E+02 0.0034 25.9 9.4 76 39-117 171-251 (525)
249 PF02073 Peptidase_M29: Thermo 50.6 68 0.0015 27.4 6.6 45 45-89 3-51 (398)
250 TIGR03208 cyc_hxne_CoA_lg cycl 50.6 1.8E+02 0.0038 25.6 10.6 81 39-123 214-296 (538)
251 TIGR01127 ilvA_1Cterm threonin 50.4 1.5E+02 0.0033 24.9 9.2 90 27-122 14-105 (380)
252 KOG1250|consensus 50.1 1.4E+02 0.0031 25.5 8.0 76 46-124 98-173 (457)
253 PRK07798 acyl-CoA synthetase; 49.9 70 0.0015 27.9 7.0 69 179-249 27-102 (533)
254 PTZ00342 acyl-CoA synthetase; 49.8 1.4E+02 0.003 28.0 9.0 97 26-125 302-407 (746)
255 PRK12483 threonine dehydratase 49.6 1.9E+02 0.0042 25.8 9.6 55 69-123 89-143 (521)
256 PF09153 DUF1938: Domain of un 49.3 51 0.0011 21.0 4.2 23 40-62 31-54 (86)
257 cd00640 Trp-synth-beta_II Tryp 49.2 1.2E+02 0.0027 23.5 10.4 93 27-121 14-106 (244)
258 PF13580 SIS_2: SIS domain; PD 48.9 58 0.0013 22.9 5.2 52 43-94 82-136 (138)
259 cd00754 MoaD Ubiquitin domain 48.9 52 0.0011 20.3 4.5 46 11-72 24-76 (80)
260 PRK08008 caiC putative crotono 48.9 84 0.0018 27.4 7.3 68 180-249 37-111 (517)
261 cd01974 Nitrogenase_MoFe_beta 48.2 1.8E+02 0.0039 25.1 9.0 46 63-109 302-351 (435)
262 PF00571 CBS: CBS domain CBS d 48.0 50 0.0011 18.6 5.2 45 5-49 8-55 (57)
263 PRK15400 lysine decarboxylase 47.8 88 0.0019 29.0 7.2 58 61-121 232-308 (714)
264 PRK10524 prpE propionyl-CoA sy 47.7 1E+02 0.0022 27.9 7.7 85 159-248 66-157 (629)
265 PF08479 POTRA_2: POTRA domain 47.4 35 0.00075 21.1 3.5 28 35-62 26-53 (76)
266 PRK05939 hypothetical protein; 47.4 1.1E+02 0.0024 26.0 7.5 56 61-118 83-138 (397)
267 KOG1138|consensus 47.1 38 0.00083 29.6 4.5 72 56-127 410-482 (653)
268 PRK06155 crotonobetaine/carnit 47.0 1.8E+02 0.0038 25.8 9.0 82 39-124 199-281 (542)
269 KOG1252|consensus 47.0 1.7E+02 0.0037 24.4 8.1 61 60-120 99-159 (362)
270 PRK07786 long-chain-fatty-acid 46.9 1.8E+02 0.0039 25.6 9.1 84 39-125 193-279 (542)
271 PRK07059 Long-chain-fatty-acid 46.9 62 0.0014 28.6 6.2 68 179-248 47-121 (557)
272 PRK09177 xanthine-guanine phos 46.9 38 0.00081 24.6 4.0 34 39-74 9-42 (156)
273 cd01563 Thr-synth_1 Threonine 46.9 87 0.0019 25.7 6.6 89 28-122 38-127 (324)
274 PRK04914 ATP-dependent helicas 46.8 1.9E+02 0.0041 28.0 9.4 70 48-120 480-555 (956)
275 TIGR01217 ac_ac_CoA_syn acetoa 46.5 1.3E+02 0.0027 27.6 8.2 64 59-122 301-367 (652)
276 PLN02238 hypoxanthine phosphor 46.3 69 0.0015 24.1 5.5 21 39-59 11-31 (189)
277 cd01019 ZnuA Zinc binding prot 46.3 92 0.002 25.1 6.6 81 42-124 156-241 (286)
278 PF07538 ChW: Clostridial hydr 46.2 15 0.00032 19.3 1.3 12 169-180 16-27 (36)
279 PLN02430 long-chain-fatty-acid 45.9 2.2E+02 0.0047 26.2 9.6 96 27-125 219-326 (660)
280 cd01016 TroA Metal binding pro 45.1 84 0.0018 25.2 6.1 81 43-125 137-224 (276)
281 PF00156 Pribosyltran: Phospho 45.0 88 0.0019 21.1 5.6 27 39-65 4-30 (125)
282 PRK08813 threonine dehydratase 44.9 1.9E+02 0.0041 24.3 9.0 69 51-122 70-138 (349)
283 cd00615 Orn_deC_like Ornithine 44.6 1.2E+02 0.0026 24.4 7.1 55 61-118 96-161 (294)
284 PF07994 NAD_binding_5: Myo-in 44.5 1.7E+02 0.0038 23.8 8.7 76 41-120 127-232 (295)
285 PF08845 SymE_toxin: Toxin Sym 44.4 30 0.00066 20.3 2.6 22 53-74 30-51 (57)
286 TIGR02080 O_succ_thio_ly O-suc 44.4 1.6E+02 0.0035 24.9 8.0 56 61-117 87-142 (382)
287 cd06447 D-Ser-dehyd D-Serine d 44.1 1.7E+02 0.0038 25.1 8.1 57 67-123 136-192 (404)
288 TIGR02316 propion_prpE propion 44.0 1.4E+02 0.0029 27.1 8.0 85 39-126 251-341 (628)
289 TIGR00623 sula cell division i 43.9 1E+02 0.0023 22.7 5.8 34 55-88 76-109 (168)
290 PTZ00297 pantothenate kinase; 43.9 1.5E+02 0.0032 30.3 8.5 85 38-126 619-704 (1452)
291 PRK08526 threonine dehydratase 43.9 2.1E+02 0.0045 24.5 8.8 54 70-123 73-126 (403)
292 cd01562 Thr-dehyd Threonine de 43.8 1.4E+02 0.003 24.2 7.3 54 69-122 69-122 (304)
293 PRK12406 long-chain-fatty-acid 43.4 2E+02 0.0042 25.1 8.7 67 58-125 190-257 (509)
294 PRK08574 cystathionine gamma-s 43.3 1.4E+02 0.003 25.3 7.5 56 61-118 89-144 (385)
295 PRK13390 acyl-CoA synthetase; 42.8 1E+02 0.0023 26.7 6.9 68 179-248 23-97 (501)
296 cd01448 TST_Repeat_1 Thiosulfa 42.4 84 0.0018 21.2 5.1 41 50-90 65-106 (122)
297 PRK12723 flagellar biosynthesi 42.2 1.3E+02 0.0028 25.7 7.0 15 234-248 358-372 (388)
298 PRK07768 long-chain-fatty-acid 42.0 2.4E+02 0.0053 24.8 9.5 90 27-119 151-254 (545)
299 PRK06060 acyl-CoA synthetase; 41.8 2.1E+02 0.0046 26.4 9.0 85 39-125 164-250 (705)
300 PRK05605 long-chain-fatty-acid 41.7 56 0.0012 29.0 5.1 67 180-248 57-130 (573)
301 smart00728 ChW Clostridial hyd 41.5 17 0.00036 20.3 1.1 12 169-180 17-28 (46)
302 cd01137 PsaA Metal binding pro 41.5 1.1E+02 0.0023 24.8 6.2 82 43-124 153-239 (287)
303 PF09312 SurA_N: SurA N-termin 41.4 72 0.0016 21.8 4.6 32 28-60 2-33 (118)
304 PRK08751 putative long-chain f 41.3 1.7E+02 0.0037 25.8 8.1 85 39-123 227-315 (560)
305 PRK13237 tyrosine phenol-lyase 40.9 2.4E+02 0.0053 24.7 8.4 66 40-110 78-173 (460)
306 TIGR01286 nifK nitrogenase mol 40.8 2.5E+02 0.0053 25.1 8.7 47 63-110 362-412 (515)
307 COG3340 PepE Peptidase E [Amin 40.8 1.2E+02 0.0026 23.5 5.8 59 2-63 7-65 (224)
308 COG3220 Uncharacterized protei 40.6 91 0.002 24.8 5.3 50 10-59 223-272 (282)
309 PLN02330 4-coumarate--CoA liga 40.5 77 0.0017 28.0 5.8 68 179-248 54-128 (546)
310 KOG1176|consensus 40.2 44 0.00095 29.8 4.1 69 178-248 43-120 (537)
311 PRK14119 gpmA phosphoglyceromu 40.1 85 0.0019 24.3 5.3 38 40-77 150-187 (228)
312 PRK04813 D-alanine--poly(phosp 39.7 2.5E+02 0.0054 24.2 9.7 82 39-123 162-246 (503)
313 PRK06087 short chain acyl-CoA 39.6 2.7E+02 0.0058 24.6 9.2 77 39-119 206-284 (547)
314 PRK09331 Sep-tRNA:Cys-tRNA syn 39.4 1.7E+02 0.0037 24.7 7.4 55 61-118 99-165 (387)
315 PLN02409 serine--glyoxylate am 39.1 2.2E+02 0.0047 24.2 8.1 57 61-118 81-144 (401)
316 PRK15399 lysine decarboxylase 39.0 1.4E+02 0.003 27.8 7.1 58 61-121 232-308 (713)
317 TIGR01203 HGPRTase hypoxanthin 38.9 1.2E+02 0.0026 22.2 5.7 20 40-59 3-22 (166)
318 PRK05205 bifunctional pyrimidi 38.7 1.5E+02 0.0033 21.8 6.3 21 39-59 6-26 (176)
319 PRK14807 histidinol-phosphate 38.7 2.3E+02 0.0049 23.5 8.0 55 61-118 97-155 (351)
320 PRK09224 threonine dehydratase 38.7 2.8E+02 0.0061 24.6 9.1 54 69-122 72-125 (504)
321 COG1171 IlvA Threonine dehydra 38.3 2.4E+02 0.0052 23.7 9.0 58 66-125 77-134 (347)
322 PF07722 Peptidase_C26: Peptid 38.2 43 0.00094 25.8 3.4 37 81-118 30-66 (217)
323 PLN02574 4-coumarate--CoA liga 38.2 2.9E+02 0.0062 24.5 9.2 86 39-125 217-306 (560)
324 PRK07503 methionine gamma-lyas 38.1 1.9E+02 0.0042 24.6 7.6 55 61-117 101-156 (403)
325 PRK12492 long-chain-fatty-acid 38.1 2.9E+02 0.0063 24.5 9.2 86 39-124 226-320 (562)
326 cd07050 BMC_EutL_repeat2 ethan 38.0 84 0.0018 20.0 3.9 38 54-91 4-42 (87)
327 PRK06721 threonine synthase; R 37.9 1.6E+02 0.0036 24.5 7.0 89 28-121 43-132 (352)
328 PRK08162 acyl-CoA synthetase; 37.8 61 0.0013 28.5 4.7 68 180-249 43-117 (545)
329 COG2897 SseA Rhodanese-related 37.4 1E+02 0.0022 25.0 5.4 54 39-92 203-262 (285)
330 PRK05638 threonine synthase; V 37.1 1.5E+02 0.0032 25.8 6.8 58 65-123 113-170 (442)
331 PF05114 DUF692: Protein of un 36.9 96 0.0021 25.0 5.2 51 10-60 221-271 (274)
332 PF09373 PMBR: Pseudomurein-bi 36.8 62 0.0013 16.4 3.9 27 38-64 3-29 (33)
333 PRK08134 O-acetylhomoserine am 36.7 2.3E+02 0.005 24.5 7.8 31 85-117 125-155 (433)
334 cd01017 AdcA Metal binding pro 36.5 1.2E+02 0.0025 24.4 5.8 57 66-124 172-233 (282)
335 PRK06018 putative acyl-CoA syn 36.5 2.6E+02 0.0055 24.7 8.4 67 58-124 214-281 (542)
336 PRK07514 malonyl-CoA synthase; 36.5 86 0.0019 27.2 5.4 70 178-249 26-102 (504)
337 TIGR02035 D_Ser_am_lyase D-ser 36.5 1.6E+02 0.0035 25.5 6.8 58 67-124 154-211 (431)
338 cd07944 DRE_TIM_HOA_like 4-hyd 36.4 2.2E+02 0.0048 22.7 8.6 74 13-92 138-212 (266)
339 KOG1371|consensus 36.2 2.4E+02 0.0052 23.5 7.2 26 97-122 63-88 (343)
340 smart00450 RHOD Rhodanese Homo 36.0 1.1E+02 0.0024 19.1 5.1 40 51-90 43-82 (100)
341 PF01297 TroA: Periplasmic sol 35.9 53 0.0011 25.9 3.6 81 42-124 127-212 (256)
342 TIGR01278 DPOR_BchB light-inde 35.6 2.2E+02 0.0048 25.3 7.7 34 63-96 294-327 (511)
343 PRK07409 threonine synthase; V 35.1 1.8E+02 0.004 24.2 6.9 53 69-121 82-135 (353)
344 PRK15029 arginine decarboxylas 35.0 1.7E+02 0.0037 27.5 7.0 58 61-121 242-323 (755)
345 PF04023 FeoA: FeoA domain; I 35.0 57 0.0012 19.8 3.0 23 50-72 22-44 (74)
346 PRK12582 acyl-CoA synthetase; 34.7 97 0.0021 28.0 5.6 68 179-248 79-158 (624)
347 PRK09545 znuA high-affinity zi 34.7 1.7E+02 0.0037 24.0 6.5 82 42-125 180-266 (311)
348 PTZ00314 inosine-5'-monophosph 34.5 3.3E+02 0.0072 24.1 9.9 87 8-97 173-262 (495)
349 PRK06234 methionine gamma-lyas 34.4 2.6E+02 0.0057 23.8 7.8 56 61-118 100-156 (400)
350 TIGR02372 4_coum_CoA_lig 4-cou 34.2 2.9E+02 0.0063 23.4 12.7 82 38-125 113-198 (386)
351 PRK02991 D-serine dehydratase; 34.2 2E+02 0.0043 25.1 7.0 56 68-123 160-215 (441)
352 COG1916 Uncharacterized homolo 34.0 2.5E+02 0.0055 23.7 7.1 75 13-97 25-121 (388)
353 PF02606 LpxK: Tetraacyldisacc 33.9 1.5E+02 0.0033 24.5 6.1 88 47-136 52-153 (326)
354 PF04014 Antitoxin-MazE: Antid 33.9 75 0.0016 17.5 3.1 20 55-74 15-34 (47)
355 PRK09629 bifunctional thiosulf 33.8 1E+02 0.0022 28.0 5.4 43 50-92 209-251 (610)
356 PRK08638 threonine dehydratase 33.7 2.8E+02 0.006 23.0 8.1 54 69-122 79-132 (333)
357 TIGR02618 tyr_phenol_ly tyrosi 33.6 3.3E+02 0.0071 23.8 8.1 66 40-110 71-166 (450)
358 PRK06145 acyl-CoA synthetase; 33.4 3.2E+02 0.0069 23.6 9.5 82 39-124 168-251 (497)
359 TIGR03772 anch_rpt_subst ancho 33.4 1.5E+02 0.0032 26.2 6.1 80 42-123 346-432 (479)
360 TIGR03201 dearomat_had 6-hydro 33.2 2.5E+02 0.0055 23.1 7.4 59 56-118 159-217 (349)
361 PRK09029 O-succinylbenzoic aci 33.2 1E+02 0.0022 26.4 5.3 68 179-248 27-101 (458)
362 PRK13391 acyl-CoA synthetase; 33.1 2.8E+02 0.0061 24.1 8.1 64 59-123 195-259 (511)
363 PLN02387 long-chain-fatty-acid 33.1 1.3E+02 0.0029 27.7 6.2 69 179-249 105-180 (696)
364 TIGR01258 pgm_1 phosphoglycera 33.0 1.3E+02 0.0028 23.7 5.3 36 40-75 149-184 (245)
365 PLN02723 3-mercaptopyruvate su 33.0 1.2E+02 0.0027 24.9 5.4 46 50-95 89-136 (320)
366 PF02729 OTCace_N: Aspartate/o 33.0 1.8E+02 0.0039 20.7 9.1 75 44-119 16-102 (142)
367 PRK13382 acyl-CoA synthetase; 33.0 3.4E+02 0.0075 23.9 8.9 83 39-125 215-298 (537)
368 PRK11493 sseA 3-mercaptopyruva 32.8 1.2E+02 0.0027 24.3 5.3 43 48-90 71-114 (281)
369 PRK15423 hypoxanthine phosphor 32.7 1.5E+02 0.0032 22.1 5.3 21 39-59 8-28 (178)
370 TIGR00715 precor6x_red precorr 32.7 1.2E+02 0.0026 24.1 5.1 53 64-119 150-205 (256)
371 PLN02970 serine racemase 32.5 2.9E+02 0.0062 22.8 9.5 54 69-122 79-132 (328)
372 PRK09422 ethanol-active dehydr 32.4 2.2E+02 0.0049 23.1 7.0 59 57-118 156-214 (338)
373 COG1167 ARO8 Transcriptional r 32.3 3.4E+02 0.0074 23.7 12.3 136 61-200 176-330 (459)
374 PRK08195 4-hyroxy-2-oxovalerat 32.3 3E+02 0.0064 22.9 8.5 94 12-111 143-245 (337)
375 PTZ00271 hypoxanthine-guanine 32.3 1.4E+02 0.0031 22.9 5.3 21 39-59 27-47 (211)
376 COG2746 Aminoglycoside N3'-ace 32.2 58 0.0013 25.6 3.1 25 50-74 15-39 (251)
377 PF02254 TrkA_N: TrkA-N domain 32.2 1.1E+02 0.0023 20.4 4.3 97 14-117 8-115 (116)
378 cd02067 B12-binding B12 bindin 32.1 1.6E+02 0.0035 19.8 7.0 38 82-119 21-58 (119)
379 TIGR03877 thermo_KaiC_1 KaiC d 32.0 1.8E+02 0.0039 22.6 6.0 55 58-112 15-73 (237)
380 PF13344 Hydrolase_6: Haloacid 32.0 62 0.0013 21.4 3.0 49 32-84 2-50 (101)
381 TIGR02822 adh_fam_2 zinc-bindi 31.8 2.4E+02 0.0051 23.1 7.0 58 56-117 158-215 (329)
382 PF01861 DUF43: Protein of unk 31.8 2.1E+02 0.0045 22.6 6.1 63 16-84 3-65 (243)
383 TIGR02991 ectoine_eutB ectoine 31.7 2.9E+02 0.0063 22.7 8.4 52 70-121 72-123 (317)
384 TIGR01124 ilvA_2Cterm threonin 31.5 3.7E+02 0.0081 23.8 9.3 51 71-121 71-121 (499)
385 PRK11858 aksA trans-homoaconit 31.3 3.3E+02 0.0071 23.1 8.7 89 12-108 144-241 (378)
386 PRK07050 cystathionine beta-ly 31.1 2.9E+02 0.0063 23.5 7.5 25 174-198 218-243 (394)
387 CHL00076 chlB photochlorophyll 30.6 3.9E+02 0.0085 23.8 8.6 56 63-118 304-361 (513)
388 PRK08197 threonine synthase; V 30.4 2.4E+02 0.0052 24.0 6.9 53 69-121 131-183 (394)
389 PRK08045 cystathionine gamma-s 30.4 2.2E+02 0.0048 24.1 6.7 56 61-118 88-144 (386)
390 TIGR00682 lpxK tetraacyldisacc 30.3 1.5E+02 0.0032 24.5 5.3 45 91-136 102-146 (311)
391 PF09351 DUF1993: Domain of un 29.9 1.3E+02 0.0028 22.0 4.5 58 35-92 75-155 (162)
392 TIGR01796 CM_mono_aroH monofun 29.7 56 0.0012 22.4 2.4 54 41-94 14-71 (117)
393 PRK08248 O-acetylhomoserine am 29.6 3.1E+02 0.0067 23.7 7.5 56 61-118 100-156 (431)
394 PF00667 FAD_binding_1: FAD bi 29.5 66 0.0014 24.7 3.1 29 60-88 41-69 (219)
395 PRK10287 thiosulfate:cyanide s 29.4 1.8E+02 0.0038 19.4 6.0 47 39-92 42-88 (104)
396 cd06451 AGAT_like Alanine-glyo 29.3 3.2E+02 0.007 22.4 7.9 57 61-118 71-131 (356)
397 PF08541 ACP_syn_III_C: 3-Oxoa 29.3 67 0.0014 20.4 2.7 23 50-72 55-77 (90)
398 TIGR02660 nifV_homocitr homoci 29.2 3.5E+02 0.0076 22.8 8.4 93 13-113 142-244 (365)
399 PRK14665 mnmA tRNA-specific 2- 29.2 2.6E+02 0.0056 23.6 6.7 59 61-119 2-68 (360)
400 PRK14118 gpmA phosphoglyceromu 29.1 1.5E+02 0.0032 22.9 5.1 35 40-74 149-183 (227)
401 PRK08276 long-chain-fatty-acid 29.1 1.4E+02 0.0029 26.0 5.4 69 179-249 10-85 (502)
402 PRK08005 epimerase; Validated 29.0 2.7E+02 0.0059 21.4 8.0 63 52-117 73-136 (210)
403 TIGR02539 SepCysS Sep-tRNA:Cys 28.8 2E+02 0.0043 24.0 6.2 54 61-117 87-152 (370)
404 PF00291 PALP: Pyridoxal-phosp 28.6 3.1E+02 0.0067 22.0 9.4 56 64-120 56-111 (306)
405 PF03120 DNA_ligase_OB: NAD-de 28.6 65 0.0014 20.6 2.4 35 35-74 29-63 (82)
406 KOG0387|consensus 28.5 3E+02 0.0065 26.1 7.2 110 61-174 543-661 (923)
407 cd02070 corrinoid_protein_B12- 28.5 2.6E+02 0.0056 21.1 10.3 85 35-119 46-141 (201)
408 cd06454 KBL_like KBL_like; thi 28.4 2.5E+02 0.0053 22.9 6.6 53 62-118 83-139 (349)
409 PRK13578 ornithine decarboxyla 28.3 2.6E+02 0.0056 26.2 7.0 48 61-110 211-272 (720)
410 cd02069 methionine_synthase_B1 28.3 2.8E+02 0.006 21.3 10.8 86 35-120 50-148 (213)
411 PF06745 KaiC: KaiC; InterPro 28.2 1.6E+02 0.0035 22.5 5.2 55 58-112 13-72 (226)
412 PRK08745 ribulose-phosphate 3- 28.0 2.9E+02 0.0063 21.5 8.1 63 52-117 77-140 (223)
413 cd01018 ZntC Metal binding pro 27.8 1.7E+02 0.0037 23.2 5.4 79 42-124 147-230 (266)
414 PF05221 AdoHcyase: S-adenosyl 27.7 3.3E+02 0.007 21.9 7.7 59 61-119 40-100 (268)
415 PRK06352 threonine synthase; V 27.2 3E+02 0.0065 23.0 6.8 89 28-121 43-132 (351)
416 PRK02910 light-independent pro 27.1 3.9E+02 0.0085 23.8 7.8 55 63-117 292-348 (519)
417 PRK07591 threonine synthase; V 27.0 3E+02 0.0065 23.7 6.9 87 29-121 106-193 (421)
418 TIGR02304 aden_form_hyp probab 27.0 4.2E+02 0.0091 23.0 8.4 62 59-123 138-199 (430)
419 PRK08133 O-succinylhomoserine 26.9 3.9E+02 0.0085 22.6 8.0 21 178-198 218-238 (390)
420 COG2885 OmpA Outer membrane pr 26.7 2.7E+02 0.0059 20.7 7.0 60 11-71 97-161 (190)
421 PLN02479 acetate-CoA ligase 26.7 4.6E+02 0.0099 23.3 10.4 83 39-125 214-297 (567)
422 PRK05409 hypothetical protein; 26.6 2.6E+02 0.0057 22.7 6.1 49 11-59 224-272 (281)
423 PRK06450 threonine synthase; V 26.6 3.3E+02 0.0072 22.6 7.0 78 39-122 77-154 (338)
424 TIGR00649 MG423 conserved hypo 26.6 4.1E+02 0.009 22.8 7.8 58 60-117 315-381 (422)
425 PF00682 HMGL-like: HMGL-like 26.6 3E+02 0.0065 21.2 7.9 73 13-92 137-210 (237)
426 PF02597 ThiS: ThiS family; I 26.4 26 0.00057 21.5 0.4 50 10-72 19-73 (77)
427 KOG0023|consensus 26.3 3.5E+02 0.0076 22.6 6.6 62 56-120 174-235 (360)
428 cd04459 Rho_CSD Rho_CSD: Rho p 26.3 67 0.0014 19.7 2.1 19 54-72 34-52 (68)
429 TIGR01686 FkbH FkbH-like domai 26.3 3.6E+02 0.0079 22.1 8.0 79 41-123 28-115 (320)
430 PRK04870 histidinol-phosphate 26.3 3.7E+02 0.0081 22.1 8.3 55 61-118 102-160 (356)
431 PRK08329 threonine synthase; V 26.2 3.4E+02 0.0073 22.6 7.0 76 39-120 84-159 (347)
432 PRK06437 hypothetical protein; 26.2 1.1E+02 0.0024 18.5 3.1 47 9-72 17-63 (67)
433 PF00154 RecA: recA bacterial 26.2 2E+02 0.0044 23.8 5.5 107 14-121 2-115 (322)
434 PRK14185 bifunctional 5,10-met 26.1 3.7E+02 0.0079 22.0 8.6 77 44-120 12-98 (293)
435 PF14552 Tautomerase_2: Tautom 25.9 96 0.0021 19.7 2.9 38 39-76 39-77 (82)
436 TIGR00260 thrC threonine synth 25.9 2.3E+02 0.005 23.3 5.9 87 29-121 40-128 (328)
437 PRK08180 feruloyl-CoA synthase 25.8 5E+02 0.011 23.4 9.9 97 26-123 207-316 (614)
438 TIGR03499 FlhF flagellar biosy 25.8 3.5E+02 0.0077 21.7 7.1 12 63-74 193-204 (282)
439 PRK08198 threonine dehydratase 25.8 4.2E+02 0.0091 22.6 9.1 52 71-122 76-127 (404)
440 PF14606 Lipase_GDSL_3: GDSL-l 25.6 2.9E+02 0.0063 20.7 6.1 54 10-63 75-138 (178)
441 PRK06178 acyl-CoA synthetase; 25.6 4.7E+02 0.01 23.1 10.3 79 39-120 228-308 (567)
442 TIGR03392 FeS_syn_CsdA cystein 25.5 4.1E+02 0.0088 22.3 8.1 56 61-117 103-163 (398)
443 cd07940 DRE_TIM_IPMS 2-isoprop 25.5 3.5E+02 0.0075 21.5 8.1 93 14-111 144-245 (268)
444 smart00467 GS GS motif. Aa app 25.4 14 0.00031 18.5 -0.7 12 169-180 11-23 (30)
445 KOG1529|consensus 25.2 77 0.0017 25.5 2.8 55 40-95 212-266 (286)
446 PRK07769 long-chain-fatty-acid 25.2 5.1E+02 0.011 23.4 9.9 71 39-112 199-273 (631)
447 PRK06110 hypothetical protein; 25.2 3.9E+02 0.0084 22.0 10.6 54 68-121 73-126 (322)
448 cd02071 MM_CoA_mut_B12_BD meth 25.2 2.3E+02 0.005 19.3 7.1 42 79-120 18-59 (122)
449 TIGR02326 transamin_PhnW 2-ami 25.1 3.9E+02 0.0085 22.0 7.7 14 235-248 310-323 (363)
450 PRK12342 hypothetical protein; 25.1 3.5E+02 0.0077 21.5 7.4 85 35-122 26-120 (254)
451 TIGR03881 KaiC_arch_4 KaiC dom 25.1 3.1E+02 0.0068 20.9 6.4 53 59-111 15-71 (229)
452 PRK02261 methylaspartate mutas 25.0 2.5E+02 0.0055 19.8 8.0 44 77-120 20-63 (137)
453 PRK11267 biopolymer transport 24.9 2.5E+02 0.0055 19.8 6.7 53 36-94 77-132 (141)
454 COG4006 Uncharacterized protei 24.7 3.5E+02 0.0077 21.3 7.5 50 41-90 125-179 (278)
455 PRK14116 gpmA phosphoglyceromu 24.6 2.1E+02 0.0045 22.1 5.2 36 40-75 150-185 (228)
456 PF02350 Epimerase_2: UDP-N-ac 24.6 4.1E+02 0.009 22.1 8.8 85 42-130 49-142 (346)
457 TIGR03528 2_3_DAP_am_ly diamin 24.6 3.2E+02 0.0069 23.4 6.6 55 68-122 116-170 (396)
458 PRK06608 threonine dehydratase 24.6 4.1E+02 0.0089 22.1 8.8 64 54-119 63-126 (338)
459 PF13623 SurA_N_2: SurA N-term 24.3 1.6E+02 0.0035 21.1 4.1 26 34-59 43-68 (145)
460 cd01971 Nitrogenase_VnfN_like 24.3 4.6E+02 0.01 22.6 9.6 55 64-118 293-354 (427)
461 PF11455 DUF3018: Protein of 24.3 1.6E+02 0.0034 17.9 3.3 26 46-74 2-27 (65)
462 PF12965 DUF3854: Domain of un 24.2 1.5E+02 0.0032 20.8 3.9 29 34-62 76-104 (130)
463 cd08239 THR_DH_like L-threonin 24.0 4E+02 0.0086 21.7 7.5 59 56-118 156-215 (339)
464 PRK07334 threonine dehydratase 23.9 4.6E+02 0.01 22.4 8.7 53 69-121 75-127 (403)
465 PRK10537 voltage-gated potassi 23.7 1.6E+02 0.0034 25.2 4.6 66 55-121 294-359 (393)
466 KOG0633|consensus 23.6 53 0.0011 26.3 1.6 70 51-120 97-169 (375)
467 cd01795 USP48_C USP ubiquitin- 23.5 1.7E+02 0.0037 19.5 3.7 34 54-87 59-92 (107)
468 cd00378 SHMT Serine-glycine hy 23.5 1.9E+02 0.004 24.4 5.1 59 61-119 102-169 (402)
469 PF00382 TFIIB: Transcription 23.4 1.8E+02 0.0039 17.5 4.2 53 44-108 13-65 (71)
470 COG2897 SseA Rhodanese-related 23.4 2E+02 0.0044 23.3 4.9 41 49-89 75-116 (285)
471 TIGR01285 nifN nitrogenase mol 23.4 4.9E+02 0.011 22.5 9.7 32 64-96 311-342 (432)
472 PF01035 DNA_binding_1: 6-O-me 23.3 85 0.0018 20.0 2.3 24 35-58 15-44 (85)
473 cd00565 ThiS ThiaminS ubiquiti 23.2 1.2E+02 0.0027 17.9 2.9 50 10-72 12-61 (65)
474 PRK06815 hypothetical protein; 23.1 4.2E+02 0.0091 21.7 9.2 53 69-121 72-124 (317)
475 COG0365 Acs Acyl-coenzyme A sy 23.1 5.5E+02 0.012 23.0 9.4 88 39-128 190-281 (528)
476 PRK10874 cysteine sulfinate de 23.1 4.6E+02 0.0099 22.1 8.2 14 235-248 337-350 (401)
477 PRK01906 tetraacyldisaccharide 23.1 3.1E+02 0.0066 22.9 6.0 46 90-136 128-174 (338)
478 TIGR01683 thiS thiamine biosyn 23.0 96 0.0021 18.4 2.4 50 10-72 11-60 (64)
479 cd03174 DRE_TIM_metallolyase D 23.0 3.7E+02 0.008 21.0 7.4 91 14-111 147-246 (265)
480 PRK01112 phosphoglyceromutase; 23.0 2.1E+02 0.0046 22.2 4.9 35 40-74 149-183 (228)
481 KOG0024|consensus 23.0 4.5E+02 0.0098 22.0 6.8 63 55-120 161-223 (354)
482 cd01529 4RHOD_Repeats Member o 22.9 2.1E+02 0.0046 18.2 6.0 48 39-89 34-81 (96)
483 COG0467 RAD55 RecA-superfamily 22.9 2.9E+02 0.0063 21.7 5.8 54 59-112 18-75 (260)
484 PLN02409 serine--glyoxylate am 22.7 4.1E+02 0.0089 22.5 7.0 75 43-118 38-114 (401)
485 COG2967 ApaG Uncharacterized p 22.6 59 0.0013 22.3 1.5 24 165-188 80-104 (126)
486 PRK08883 ribulose-phosphate 3- 22.6 3.7E+02 0.008 20.8 8.3 63 52-117 73-136 (220)
487 PLN02893 Cellulose synthase-li 22.4 2.2E+02 0.0047 26.7 5.3 60 5-64 111-176 (734)
488 PRK07445 O-succinylbenzoic aci 22.4 2.4E+02 0.0053 24.3 5.7 66 182-249 21-94 (452)
489 PRK06260 threonine synthase; V 22.3 4.1E+02 0.0089 22.6 6.9 87 29-121 84-172 (397)
490 TIGR03880 KaiC_arch_3 KaiC dom 22.2 3.2E+02 0.007 20.8 5.8 54 59-112 11-68 (224)
491 TIGR03366 HpnZ_proposed putati 22.2 4E+02 0.0087 21.1 7.1 75 40-118 94-172 (280)
492 smart00855 PGAM Phosphoglycera 22.1 2E+02 0.0044 20.2 4.5 35 40-74 116-150 (155)
493 PRK06710 long-chain-fatty-acid 21.8 5.6E+02 0.012 22.6 9.6 83 39-124 225-310 (563)
494 PTZ00216 acyl-CoA synthetase; 21.8 2.4E+02 0.0052 26.1 5.8 70 177-248 118-194 (700)
495 PRK08249 cystathionine gamma-s 21.7 5.1E+02 0.011 22.1 7.8 55 61-117 100-155 (398)
496 PRK11347 antitoxin ChpS; Provi 21.5 2.3E+02 0.005 18.1 4.6 42 54-111 19-60 (83)
497 cd00432 Ribosomal_L18_L5e Ribo 21.4 2.5E+02 0.0055 18.5 5.3 48 9-61 56-103 (103)
498 cd04866 LigD_Pol_like_3 LigD_P 21.4 2.3E+02 0.005 22.1 4.6 38 25-63 91-129 (223)
499 PTZ00123 phosphoglycerate muta 21.4 2.3E+02 0.005 22.1 4.8 36 40-75 137-172 (236)
500 cd04861 LigD_Pol_like LigD_Pol 21.4 2.3E+02 0.005 22.2 4.6 66 25-106 96-162 (227)
No 1
>KOG1177|consensus
Probab=100.00 E-value=5.4e-37 Score=247.26 Aligned_cols=237 Identities=22% Similarity=0.295 Sum_probs=193.0
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEe-cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~-~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
...|+.+.++..+++.||+.+.+. .++..+||+||.+.+.++|.+|..+|+++||||++..||+.+|+...+||.++|.
T Consensus 48 ~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~ 127 (596)
T KOG1177|consen 48 DSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGL 127 (596)
T ss_pred ccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhce
Confidence 356999999999999999998874 5677799999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhh-----hhcc-------CCC-----------eeeecc-------hh
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR-----LERT-------SVP-----------KVKLEN-------DF 139 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~-------~~~-----------~~~~~~-------~~ 139 (251)
+.+++||....+++++.++..+++++|+.+.+... +.+. ..+ .+++.+ .|
T Consensus 128 v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~ 207 (596)
T KOG1177|consen 128 VLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGAF 207 (596)
T ss_pred EEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCce
Confidence 99999999999999999999999999997765322 1111 111 111111 01
Q ss_pred -hhhhhhhhhc----ccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-
Q psy4550 140 -LSKMISENEK----LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW- 213 (251)
Q Consensus 140 -~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 213 (251)
.++....... ..........|++++-|.|||||||.|||+.+||.|+++++.....+.++.+++++++..|+++
T Consensus 208 ~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~ 287 (596)
T KOG1177|consen 208 LLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHC 287 (596)
T ss_pred ehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHHH
Confidence 0111111110 0112233467799999999999999999999999999999999999999999889988766543
Q ss_pred -----HHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 214 -----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 214 -----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
+.++++..|+|+|++.+ .|+|.+.++.|+++|+|
T Consensus 288 ~G~~~~~ma~l~~gat~Vfp~~--~f~~k~alqai~~ekcT 326 (596)
T KOG1177|consen 288 FGCVLGVMAALMHGATIVFPAP--SFDPKDALQAISNEKCT 326 (596)
T ss_pred HHHHHHHHHHHHhCcEEEeeCC--CCChHHHHHHHHhhceE
Confidence 46899999999999887 59999999999999997
No 2
>PLN02614 long-chain acyl-CoA synthetase
Probab=100.00 E-value=7.3e-36 Score=265.08 Aligned_cols=237 Identities=20% Similarity=0.230 Sum_probs=183.4
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEec---C---C--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHH
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDH---D---G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTIS 80 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~---~---~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~ 80 (251)
.+.+.++.++|.+.++++|+++|+... + + +.+||+|+.++++++|++|+++|+++||+|+++++|+++|+++
T Consensus 41 ~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~ 120 (666)
T PLN02614 41 IEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIIS 120 (666)
T ss_pred CCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 345669999999999999999999731 1 2 2489999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC------CCee-eecch---------------
Q psy4550 81 YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS------VPKV-KLEND--------------- 138 (251)
Q Consensus 81 ~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~-~~~~~--------------- 138 (251)
++||+++|++++|+++..+.+++.+++++++++++|++++..+.+.... ...+ .....
T Consensus 121 ~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 200 (666)
T PLN02614 121 MEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVI 200 (666)
T ss_pred HHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEE
Confidence 9999999999999999999999999999999999999876554432111 1111 11110
Q ss_pred -hhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC-----CCCCCChhhhhHHHH
Q psy4550 139 -FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY-----PYDEDDREACNVFFV 212 (251)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 212 (251)
.+......... .........++|+++|+|||||||.||||++||+|+...+......+ ++.++|++++.+|++
T Consensus 201 ~~~~~~~~~~~~-~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~ 279 (666)
T PLN02614 201 YAWDEFLKLGEG-KQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLA 279 (666)
T ss_pred EEHHHHHhhccc-CCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHH
Confidence 00000000000 00112234678999999999999999999999999998877655543 567889998877765
Q ss_pred H--H---HHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 213 W--E---MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 213 ~--~---~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
| + .+.++..|+++++.+ +++..+++.|+++++|.
T Consensus 280 H~~~~~~~~~~l~~G~~v~~~~----~~~~~~~~~i~~~~~T~ 318 (666)
T PLN02614 280 HIFDRVIEECFIQHGAAIGFWR----GDVKLLIEDLGELKPTI 318 (666)
T ss_pred HHHHHHHHHHHHHhCCEEEEeC----CCHHHHHHHHHHhCCeE
Confidence 3 2 345678999998864 68999999999999984
No 3
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-35 Score=257.15 Aligned_cols=239 Identities=28% Similarity=0.407 Sum_probs=190.4
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecCCC-eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGR-SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~-~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~ 87 (251)
.....++.+++.+.++.+|+++|+++.+.. .+||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+++
T Consensus 7 ~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~ 86 (534)
T COG0318 7 MTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRA 86 (534)
T ss_pred ccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 344568999999999999999999864443 2999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC--C---eeeecch-------hhhhhhhhhhcccCCCC
Q psy4550 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV--P---KVKLEND-------FLSKMISENEKLHNVDF 155 (251)
Q Consensus 88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~---~~~~~~~-------~~~~~~~~~~~~~~~~~ 155 (251)
|++++|+||..+..++.++++.++++.+++++++.+....... + .+..... ........... .....
T Consensus 87 Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 165 (534)
T COG0318 87 GAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPG-PDADA 165 (534)
T ss_pred CEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCC-ccccc
Confidence 9999999999999999999999999999999874333332211 1 1111110 01111111100 11111
Q ss_pred CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC--CCCCChhhhhHHHHH------HHHHhhhcCccEEE
Q psy4550 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP--YDEDDREACNVFFVW------EMLRPLTQGIPMYV 227 (251)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~ 227 (251)
....++++++++|||||||.||||++||+|+..+.......++ ++++|++++++|++| .++.+++.|+++++
T Consensus 166 ~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~ 245 (534)
T COG0318 166 RPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVL 245 (534)
T ss_pred CCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEe
Confidence 2267899999999999999999999999999999999999888 899999888776654 34566899999999
Q ss_pred ecCccccCchHHHhhhhccccC
Q psy4550 228 ISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.++ ..|++..++..+.++++|
T Consensus 246 ~~~-~~f~~~~~~~~i~~~~~t 266 (534)
T COG0318 246 LSP-EPFDPEEVLWLIEKYKVT 266 (534)
T ss_pred CCC-CCcCHHHHHHHHHHhcce
Confidence 882 139999999999999876
No 4
>PLN02736 long-chain acyl-CoA synthetase
Probab=100.00 E-value=1.3e-35 Score=263.56 Aligned_cols=237 Identities=21% Similarity=0.259 Sum_probs=188.9
Q ss_pred cCchhhhHHHHHHHHHHhCCCceEEEe---cCC-----CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH
Q psy4550 8 DYDAEGALHYMFRNQAKRTPDKIAVVD---HDG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79 (251)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~---~~~-----~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~ 79 (251)
..+...++.++|.+.++++|+++|+.. .++ +.+||+|+.++++++|++|+++|+++||+|+++++|+++|++
T Consensus 39 ~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~ 118 (651)
T PLN02736 39 DHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLI 118 (651)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHH
Confidence 345567899999999999999999832 222 459999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeeeecch----------------
Q psy4550 80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVKLEND---------------- 138 (251)
Q Consensus 80 ~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~---------------- 138 (251)
+++||+++|++++|+++..+.+++.++++.++++++|++++..+.+... ....+.....
T Consensus 119 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 198 (651)
T PLN02736 119 VDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEI 198 (651)
T ss_pred HHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEE
Confidence 9999999999999999999999999999999999999998765544321 1111111100
Q ss_pred -hhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH----
Q psy4550 139 -FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW---- 213 (251)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 213 (251)
.+......... .........++++++|+|||||||.||||++||+++..++......+++.++|++++++|++|
T Consensus 199 ~~~~~~~~~~~~-~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 277 (651)
T PLN02736 199 VTYSKLLAQGRS-SPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYER 277 (651)
T ss_pred EEHHHHHHhccc-CCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHH
Confidence 00001000000 001122346789999999999999999999999999999988888889999999988776544
Q ss_pred -HHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 214 -EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 214 -~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.++.++..|+++++.+ .++..+++.|+++++|
T Consensus 278 ~~~~~~l~~G~~i~~~~----~~~~~~~~~i~~~~~t 310 (651)
T PLN02736 278 VNQIVMLHYGVAVGFYQ----GDNLKLMDDLAALRPT 310 (651)
T ss_pred HHHHHHHHcCCEEEEeC----CCHHHHHHHHHHhCCc
Confidence 3577889999998876 4788999999999987
No 5
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=100.00 E-value=2.7e-35 Score=261.47 Aligned_cols=235 Identities=19% Similarity=0.280 Sum_probs=183.4
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEec---C---C--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHH
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDH---D---G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~---~---~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~ 81 (251)
+...++.++|.+.++++|+++|+... + + +.+||+|+.++++++|.+|.++|+++||+|+++++|+++|++++
T Consensus 40 ~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~ 119 (660)
T PLN02861 40 ADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAM 119 (660)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45568999999999999999999531 1 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc------CCCeeeecchh----------------
Q psy4550 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT------SVPKVKLENDF---------------- 139 (251)
Q Consensus 82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~---------------- 139 (251)
+||+++|++++|+++..+.+++.+++++++++++|++++..+.+... ....++.....
T Consensus 120 lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 199 (660)
T PLN02861 120 EACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCF 199 (660)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEE
Confidence 99999999999999999999999999999999999987765443221 11111111100
Q ss_pred -hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC-----CCCCChhhhhHHHHH
Q psy4550 140 -LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP-----YDEDDREACNVFFVW 213 (251)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 213 (251)
+......... ........++++++|+|||||||.||||++||++++..+......++ +.++|++++.+|+.|
T Consensus 200 ~~~~~~~~~~~--~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H 277 (660)
T PLN02861 200 SWEEFSLMGSL--DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAH 277 (660)
T ss_pred EHHHHHHhCcc--cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHH
Confidence 0000000000 11223346789999999999999999999999999988777665543 467888888776643
Q ss_pred --H---HHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 214 --E---MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 214 --~---~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+ .+.+++.|+++++.+ +++..+++.|+++++|.
T Consensus 278 ~~~~~~~~~~l~~G~~v~~~~----~~~~~~~~~i~~~~~T~ 315 (660)
T PLN02861 278 VYDQVIETYCISKGASIGFWQ----GDIRYLMEDVQALKPTI 315 (660)
T ss_pred HHHHHHHHHHHHhCCEEEEeC----CCHHHHHHHHHHhCCcE
Confidence 2 345789999998874 68999999999999983
No 6
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=100.00 E-value=6.9e-35 Score=255.16 Aligned_cols=236 Identities=17% Similarity=0.173 Sum_probs=187.3
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
..-++.++|.+.++++|+++|+++ +++.+||+||.+++.++|++|.++|+++||+|+++++|+++++++++||+++|++
T Consensus 5 ~~~~~~~~~~~~~~~~p~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav 83 (563)
T PLN02860 5 SQAHICQCLTRLATLRGNAVVTIS-GNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGI 83 (563)
T ss_pred hhhHHHHHHHHHHHhcCCceEEec-CCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEE
Confidence 345899999999999999999984 6778999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc---CCCe---ee-ecchh------hhhhhhhhhc-----ccC
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT---SVPK---VK-LENDF------LSKMISENEK-----LHN 152 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~---~~-~~~~~------~~~~~~~~~~-----~~~ 152 (251)
++|+++.++.+++.++++.+++++++++++........ ..+. .. ..... .......... ...
T Consensus 84 ~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (563)
T PLN02860 84 VAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTT 163 (563)
T ss_pred EEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccccc
Confidence 99999999999999999999999999987642221111 1111 11 11000 0000000000 000
Q ss_pred CCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEE
Q psy4550 153 VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYV 227 (251)
Q Consensus 153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~ 227 (251)
.......++++++++|||||||.||||+++|+++..+.......+++.++|+++..+|++ ..++.++..|+++++
T Consensus 164 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~ 243 (563)
T PLN02860 164 ELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVL 243 (563)
T ss_pred cccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEe
Confidence 111234568999999999999999999999999998877777788999999988766543 246788999999999
Q ss_pred ecCccccCchHHHhhhhccccCC
Q psy4550 228 ISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
.+. +++..+++.|+++++|-
T Consensus 244 ~~~---~~~~~~~~~i~~~~vt~ 263 (563)
T PLN02860 244 LPK---FDAKAALQAIKQHNVTS 263 (563)
T ss_pred cCC---CCHHHHHHHHHHhCCee
Confidence 887 99999999999999973
No 7
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.6e-34 Score=257.14 Aligned_cols=240 Identities=17% Similarity=0.187 Sum_probs=183.9
Q ss_pred CcCchhhhHHHHHHHHHHhCCCceEEEec-CC---CeeeHHHHHHHHHHHHHHHHhc---CCCCC-----------CEEE
Q psy4550 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDH-DG---RSITFKQLDEWTDIVGTYLINQ---GCIVG-----------STVG 68 (251)
Q Consensus 7 ~~~~~~~~l~~~l~~~~~~~~~~~a~~~~-~~---~~~T~~~l~~~~~~~a~~L~~~---g~~~g-----------~~V~ 68 (251)
...+...++.++|.+.++++|+++|+.+. ++ +.+||+|+.+++.++|++|.+. |+++| |+|+
T Consensus 55 ~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~ 134 (746)
T PTZ00342 55 SSLYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLG 134 (746)
T ss_pred ccccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEE
Confidence 34455789999999999999999999852 23 5799999999999999999974 99999 9999
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCee-eecchhh--
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKV-KLENDFL-- 140 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~-~~~~~~~-- 140 (251)
++++|+++|+++.+||+++|++.+|+++.++.+++.+++++++++++|++.+..+.+.... ...+ .++....
T Consensus 135 i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~ 214 (746)
T PTZ00342 135 LYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSK 214 (746)
T ss_pred EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccc
Confidence 9999999999999999999999999999999999999999999999999877665543211 1111 1111000
Q ss_pred ------------------------------------------------------hhhhhhh-----------h----ccc
Q psy4550 141 ------------------------------------------------------SKMISEN-----------E----KLH 151 (251)
Q Consensus 141 ------------------------------------------------------~~~~~~~-----------~----~~~ 151 (251)
..+.... . ...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 294 (746)
T PTZ00342 215 EININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT 294 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc
Confidence 0000000 0 000
Q ss_pred CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC--CCCCCChhhhhHHHHH-----HHHHhhhcCcc
Q psy4550 152 NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY--PYDEDDREACNVFFVW-----EMLRPLTQGIP 224 (251)
Q Consensus 152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~l~~G~~ 224 (251)
........++++++|+|||||||.||||++||+|+.+++....... .....+++++.+|+.| ..+.+++.|++
T Consensus 295 ~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~ 374 (746)
T PTZ00342 295 NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGT 374 (746)
T ss_pred CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCE
Confidence 0112345678999999999999999999999999998887654432 1234577877766644 24677899999
Q ss_pred EEEecCccccCchHHHhhhhccccCC
Q psy4550 225 MYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+++.+. ++..+++.|+++++|.
T Consensus 375 i~~~~~----~~~~l~~di~~~~pT~ 396 (746)
T PTZ00342 375 INIWSK----DINYFSKDIYNSKGNI 396 (746)
T ss_pred EEEeCC----CHHHHHHHHHHhCCcE
Confidence 998863 7999999999999983
No 8
>PRK07788 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.7e-34 Score=252.07 Aligned_cols=233 Identities=18% Similarity=0.250 Sum_probs=187.2
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.++.++|.+.++++|+++|+++ +++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~-~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 127 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALID-ERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARII 127 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEE-CCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEE
Confidence 4889999999999999999986 567899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC--C---Ceeeec-ch------hhhhhhhhhhcccCCCCCCCCC
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS--V---PKVKLE-ND------FLSKMISENEKLHNVDFPQVGL 160 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~---~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
|+++..+.+++.++++.++++++|++++..+.+.... . ..+... .. ........... ..........
T Consensus 128 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 206 (549)
T PRK07788 128 LLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAG-SSTAPLPKPP 206 (549)
T ss_pred EeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcC-CCCCCCCCCC
Confidence 9999999999999999999999999987766553321 1 111100 00 00000000000 0011222345
Q ss_pred CCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecCccccC
Q psy4550 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISDEVIYD 235 (251)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~~~~~ 235 (251)
++.++++|||||||.||||+++|+++...+......+++..+++++...|+++ .++.++..|+++++... ++
T Consensus 207 ~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~ 283 (549)
T PRK07788 207 KPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRR---FD 283 (549)
T ss_pred CCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCC---CC
Confidence 67899999999999999999999999998888888888989998876554432 35678899999999876 89
Q ss_pred chHHHhhhhccccCC
Q psy4550 236 PPRLTSGWVRLPLNG 250 (251)
Q Consensus 236 ~~~~~~~i~~~~vt~ 250 (251)
|..+++.++++++|.
T Consensus 284 ~~~~~~~i~~~~vt~ 298 (549)
T PRK07788 284 PEATLEDIAKHKATA 298 (549)
T ss_pred HHHHHHHHHHhCCcE
Confidence 999999999999973
No 9
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.3e-34 Score=255.23 Aligned_cols=235 Identities=21% Similarity=0.290 Sum_probs=190.5
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
...++.++|.+.++++|+++|+++ +++.+||+||.++++++|.+|.+.|+++||+|+++++|+.+++++++||+++|++
T Consensus 35 ~~~tl~~~l~~~a~~~p~~~Ai~~-~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~ 113 (600)
T PRK08279 35 SKRSLGDVFEEAAARHPDRPALLF-EDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAV 113 (600)
T ss_pred CcccHHHHHHHHHHhCCCCcEEEe-CCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcE
Confidence 446899999999999999999985 6778999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC-----Ceeeecc--------hhhhhhhhhh--hcccCCCC
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV-----PKVKLEN--------DFLSKMISEN--EKLHNVDF 155 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~--------~~~~~~~~~~--~~~~~~~~ 155 (251)
++|+++..+.+++.++++.++++++|++++..+.+..... ..+.... .+.+...... ........
T Consensus 114 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (600)
T PRK08279 114 VALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASR 193 (600)
T ss_pred EeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCCccCCCcc
Confidence 9999999999999999999999999999877665433211 1111110 1111111000 00001122
Q ss_pred CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEec
Q psy4550 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVIS 229 (251)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~ 229 (251)
....++++++|+|||||||.||||++||+++..++......+++.++|++++.+|+++ .++.++..|+++++.+
T Consensus 194 ~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 273 (600)
T PRK08279 194 SGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR 273 (600)
T ss_pred cCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcC
Confidence 3345689999999999999999999999999999998888899999999987665433 3456788899998888
Q ss_pred CccccCchHHHhhhhccccC
Q psy4550 230 DEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 230 ~~~~~~~~~~~~~i~~~~vt 249 (251)
. +++..+++.++++++|
T Consensus 274 ~---~~~~~~~~~i~~~~~t 290 (600)
T PRK08279 274 K---FSASRFWDDVRRYRAT 290 (600)
T ss_pred C---CCHHHHHHHHHHhcce
Confidence 6 9999999999999987
No 10
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=100.00 E-value=2e-34 Score=246.96 Aligned_cols=239 Identities=22% Similarity=0.279 Sum_probs=184.6
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEec---CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDH---DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH 85 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~---~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~ 85 (251)
+-...++..++.+.++.+|+.+++... ..+.+||+|+.+++.++|.+|++.|++.||+|+|++.|+++|+++.+||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~ 91 (613)
T COG1022 12 VAEIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAIL 91 (613)
T ss_pred hhhcccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 334568899999999999999898753 34679999999999999999999999779999999999999999999999
Q ss_pred HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh-hhhhccCC--Ceeee---cchhhhh--------------hh-
Q psy4550 86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-DRLERTSV--PKVKL---ENDFLSK--------------MI- 144 (251)
Q Consensus 86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~--~~~~~---~~~~~~~--------------~~- 144 (251)
.+|++.||+++..+++++.++++++++++||++.+.. +....... +.+.. ..+.... ..
T Consensus 92 ~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (613)
T COG1022 92 ALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGI 171 (613)
T ss_pred HcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccc
Confidence 9999999999999999999999999999999987533 33221111 00000 0000000 00
Q ss_pred h---hhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC-CCCCChhhhhHHHHHH---HH-
Q psy4550 145 S---ENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP-YDEDDREACNVFFVWE---ML- 216 (251)
Q Consensus 145 ~---~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~- 216 (251)
. ..............++|+|.|+|||||||.||||++||+|+++++........ +.++|+.++.+|+.|. ++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~ 251 (613)
T COG1022 172 SLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFE 251 (613)
T ss_pred hhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHH
Confidence 0 00000011123567899999999999999999999999999999999999997 9999999999888653 22
Q ss_pred HhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 217 RPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 217 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
..+..++...+... .++..+++.++++++|.
T Consensus 252 ~~~~~~~g~~~~~~---~~~~~~~~dl~~~rPt~ 282 (613)
T COG1022 252 GGLALYGGVTVLFK---EDPRTLLEDLKEVRPTV 282 (613)
T ss_pred HHHHhhcceEEEec---CCHHHHHHHHHHhCCeE
Confidence 44444444555554 69999999999999873
No 11
>KOG1179|consensus
Probab=100.00 E-value=1.1e-34 Score=238.20 Aligned_cols=237 Identities=19% Similarity=0.243 Sum_probs=197.1
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
...+++++|.++++++|+++|+++.+ ++.+||+|+.++++++|+.|..+|++.||.|+++++|.++|+.+++|++.+|+
T Consensus 75 ~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv 154 (649)
T KOG1179|consen 75 ERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGV 154 (649)
T ss_pred cCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCc
Confidence 34589999999999999999999644 37899999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-------CCeeeecc--------hhhhhhhhhhhcc-cCC
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-------VPKVKLEN--------DFLSKMISENEKL-HNV 153 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~--------~~~~~~~~~~~~~-~~~ 153 (251)
+...||+....+.+.|.++.++++.+|++++..+.+.+.. .+....+. +....+....... +..
T Consensus 155 ~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~vp~~ 234 (649)
T KOG1179|consen 155 ITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHPVPVS 234 (649)
T ss_pred eeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCCCCcc
Confidence 9999999999999999999999999999999876665441 11111110 1111111111111 112
Q ss_pred CCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEE
Q psy4550 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYV 227 (251)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~ 227 (251)
......-.++++.+|||||||.||+.+++|......+......++++++|+++..+|++| ++-.++..|+|+++
T Consensus 235 ~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vl 314 (649)
T KOG1179|consen 235 TRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVL 314 (649)
T ss_pred cCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEE
Confidence 233445568899999999999999999999999998888888999999999998887754 57889999999999
Q ss_pred ecCccccCchHHHhhhhccccCC
Q psy4550 228 ISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
-++ |+...||+...+|+||-
T Consensus 315 rkK---FSAS~FW~DC~k~~~Tv 334 (649)
T KOG1179|consen 315 RKK---FSASNFWDDCRKYNVTV 334 (649)
T ss_pred ecc---cchhhhHHHHHHhCCee
Confidence 998 99999999999999984
No 12
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=100.00 E-value=2.5e-34 Score=243.12 Aligned_cols=229 Identities=20% Similarity=0.303 Sum_probs=175.8
Q ss_pred HHHHHHH-hCCCceEEEecC----CCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 18 MFRNQAK-RTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 18 ~l~~~~~-~~~~~~a~~~~~----~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
.+.++.. ..+++.|++..+ .+.+||+||.+.++++|+.|++ .|+ +||||++++|+.++.+++++||.++|++.
T Consensus 14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~ 92 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP 92 (528)
T ss_pred hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 3555544 346889988432 2679999999999999999987 578 99999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC---------Ceeeecc--hhhhhhhhhhhcccCCCCCCCCC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV---------PKVKLEN--DFLSKMISENEKLHNVDFPQVGL 160 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
+|+.+.++++++...+++++++++|+.+....+.+.... ..++... .++........ ..........
T Consensus 93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~~~~~~~~~~~~--~~~~~~~~~~ 170 (528)
T COG0365 93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEKAS--EKFEFEPLPA 170 (528)
T ss_pred eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccccccHHHHhhccC--CCCCccccCC
Confidence 999999999999999999999999998876654432211 1111111 11111111111 1133344788
Q ss_pred CCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH-HhCCCCCCChhhhhH------HHHHHHHHhhhcCccEEEecCccc
Q psy4550 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH-RAYPYDEDDREACNV------FFVWEMLRPLTQGIPMYVISDEVI 233 (251)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~l~~G~~~v~~~~~~~ 233 (251)
+|+++|+|||||||+||||+|+|..+........ ..+.+.++|++++.. .+.+.++.+|..|++.++......
T Consensus 171 ~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~ 250 (528)
T COG0365 171 DDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPF 250 (528)
T ss_pred CCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCC
Confidence 9999999999999999999999998776655444 477888999998754 234568999999999999875211
Q ss_pred cCchHHHhhhhccccC
Q psy4550 234 YDPPRLTSGWVRLPLN 249 (251)
Q Consensus 234 ~~~~~~~~~i~~~~vt 249 (251)
.+|..+++.|++|+||
T Consensus 251 ~~~~~~~~~ie~~~vt 266 (528)
T COG0365 251 YSPERLWEALEKYKVT 266 (528)
T ss_pred CCHHHHHHHHHHhCCc
Confidence 2599999999999998
No 13
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=100.00 E-value=3e-34 Score=249.75 Aligned_cols=237 Identities=16% Similarity=0.152 Sum_probs=188.0
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
.....++.+.|.+.++++|+++|+.+.+++++||+||.++++++|+.|.+. +||+|+++++|+++++++++||+++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~G 91 (539)
T PRK06334 15 LRSGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSG 91 (539)
T ss_pred cCcCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhcC
Confidence 344578999999999999999999875557899999999999999999873 89999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-------CCeeeecch-----hhhhhhhhh---hcc---
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-------VPKVKLEND-----FLSKMISEN---EKL--- 150 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~---~~~--- 150 (251)
++++|++|..+.+++.++++.+++++++++++..+.+.... ...+..... +........ ...
T Consensus 92 ~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (539)
T PRK06334 92 KIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFEWL 171 (539)
T ss_pred CeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhhcCCchhh
Confidence 99999999999999999999999999999987665543221 111211110 000000000 000
Q ss_pred -cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCc
Q psy4550 151 -HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGI 223 (251)
Q Consensus 151 -~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~ 223 (251)
.........++++++|+|||||||.||||++||+++..+.......+++.++|++++.+|+++ .++.++..|+
T Consensus 172 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~ 251 (539)
T PRK06334 172 MRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGV 251 (539)
T ss_pred hhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCC
Confidence 000123456789999999999999999999999999988888888888999999987665432 3577899999
Q ss_pred cEEEecCccccCchHHHhhhhccccCC
Q psy4550 224 PMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
++++... .+++..+++.|+++++|.
T Consensus 252 ~vv~~~~--~~~~~~~~~~i~~~~~t~ 276 (539)
T PRK06334 252 PVVFAYN--PLYPKKIVEMIDEAKVTF 276 (539)
T ss_pred eEEEecC--CCCHHHHHHHHHHhCCcE
Confidence 9998764 389999999999999973
No 14
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=100.00 E-value=6.7e-34 Score=251.13 Aligned_cols=238 Identities=19% Similarity=0.266 Sum_probs=180.3
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecC----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH 85 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~ 85 (251)
+...++.++|.+.++++|+++|+++.+ .+.+||+||.++++++|++|.++|+++||+|+++++|+++++++++||+
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~ 115 (614)
T PRK08180 36 DYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAM 115 (614)
T ss_pred CcCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 345689999999999999999997531 2679999999999999999999999999999999999999999999999
Q ss_pred HHCCeEeeCCCCCC-----HHHHHHHHhhcCccEEEEccch--hhhhhcc---CCCeeeecch-------hhhhhhhhhh
Q psy4550 86 KAGGGYLPLETSYP-----PALLESVLDDAKPSIVITKGEY--MDRLERT---SVPKVKLEND-------FLSKMISENE 148 (251)
Q Consensus 86 ~~G~~~v~i~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~ 148 (251)
++|++++|++|.++ .+++.++++.++++++|+++.. ...+... ....+..... .+........
T Consensus 116 ~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 195 (614)
T PRK08180 116 YAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALLATPP 195 (614)
T ss_pred HcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccccHHHHhcccc
Confidence 99999999999988 7999999999999999998642 2222111 1111211110 0111111000
Q ss_pred c-ccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCC--CCChhhhhHHHHH------HHHHhh
Q psy4550 149 K-LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD--EDDREACNVFFVW------EMLRPL 219 (251)
Q Consensus 149 ~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~l 219 (251)
. ..........++++++|+|||||||.||||++||+++..++......+++. .++++++++|++| .++.++
T Consensus 196 ~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l 275 (614)
T PRK08180 196 TAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVL 275 (614)
T ss_pred ccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHH
Confidence 0 000111234578999999999999999999999999999888877777764 4577777665533 356789
Q ss_pred hcCccEEEecCccccCc---hHHHhhhhccccC
Q psy4550 220 TQGIPMYVISDEVIYDP---PRLTSGWVRLPLN 249 (251)
Q Consensus 220 ~~G~~~v~~~~~~~~~~---~~~~~~i~~~~vt 249 (251)
..|+++++.+. .+++ ..+++.++++++|
T Consensus 276 ~~G~~v~~~~~--~~~~~~~~~~l~~i~~~~~t 306 (614)
T PRK08180 276 YNGGTLYIDDG--KPTPGGFDETLRNLREISPT 306 (614)
T ss_pred hcCCEEEEeCC--CccchhHHHHHHHHHHhCCc
Confidence 99999999774 2444 4678888999887
No 15
>PLN02246 4-coumarate--CoA ligase
Probab=100.00 E-value=1.9e-33 Score=244.86 Aligned_cols=239 Identities=21% Similarity=0.312 Sum_probs=189.5
Q ss_pred cCchhhhHHHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (251)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~ 86 (251)
.++...++.+++.+.++++|+++|+++.+ ++++||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||++
T Consensus 18 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~ 97 (537)
T PLN02246 18 YIPNHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASR 97 (537)
T ss_pred CCCCCCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 44556689999999999999999998643 67899999999999999999999999999999999999999999999999
Q ss_pred HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeecchhh---hhhhhhhhcccCCCCCCCC
Q psy4550 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLENDFL---SKMISENEKLHNVDFPQVG 159 (251)
Q Consensus 87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 159 (251)
+|++++|++|..+.+++..+++.++++++++++...+.+.... ...+..+.... ...................
T Consensus 98 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T PLN02246 98 RGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEIS 177 (537)
T ss_pred cCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHHHHhcCCCCCCCCCCCC
Confidence 9999999999999999999999999999999987766543321 12222221110 0000000011111223346
Q ss_pred CCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH----hCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEec
Q psy4550 160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR----AYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVIS 229 (251)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~ 229 (251)
++++++++|||||||.||||+++|+++......... .+++.++|++++.+++++ .++.++..|+++++.+
T Consensus 178 ~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 257 (537)
T PLN02246 178 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMP 257 (537)
T ss_pred ccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeC
Confidence 789999999999999999999999999887665433 567888999887665432 3567899999999998
Q ss_pred CccccCchHHHhhhhccccC
Q psy4550 230 DEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 230 ~~~~~~~~~~~~~i~~~~vt 249 (251)
. +++..+++.|+++++|
T Consensus 258 ~---~~~~~~~~~i~~~~~t 274 (537)
T PLN02246 258 K---FEIGALLELIQRHKVT 274 (537)
T ss_pred C---CCHHHHHHHHHHhCce
Confidence 7 8999999999999987
No 16
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=100.00 E-value=9.6e-34 Score=246.87 Aligned_cols=235 Identities=20% Similarity=0.253 Sum_probs=190.6
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
...++.++|.+.++++|+++|+++ +++.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus 19 ~~~~l~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~ 97 (542)
T PRK06155 19 SERTLPAMLARQAERYPDRPLLVF-GGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI 97 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEe-CCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCE
Confidence 445799999999999999999984 6778999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC-----Cee-eecchhh---h-h--hhhhhhcccCCCCCCC
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV-----PKV-KLENDFL---S-K--MISENEKLHNVDFPQV 158 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~-~~~~~~~---~-~--~~~~~~~~~~~~~~~~ 158 (251)
++|+++..+.+++.++++.+++++++++++..+.+..... ..+ ..+.... . . ................
T Consensus 98 ~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (542)
T PRK06155 98 AVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAV 177 (542)
T ss_pred EEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhhcccCCCCCCCCC
Confidence 9999999999999999999999999999877655443211 111 1111100 0 0 0000000000112234
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecCccc
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISDEVI 233 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~~~ 233 (251)
.++++++|+|||||||.||+|+++|+++..........+++.+++++++..++++ .++.++..|+++++.+.
T Consensus 178 ~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~--- 254 (542)
T PRK06155 178 QPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPR--- 254 (542)
T ss_pred CCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeCC---
Confidence 5689999999999999999999999999988877788889999999987665543 45889999999999887
Q ss_pred cCchHHHhhhhccccC
Q psy4550 234 YDPPRLTSGWVRLPLN 249 (251)
Q Consensus 234 ~~~~~~~~~i~~~~vt 249 (251)
+++..+++.|+++++|
T Consensus 255 ~~~~~~~~~l~~~~~t 270 (542)
T PRK06155 255 FSASGFWPAVRRHGAT 270 (542)
T ss_pred CCHHHHHHHHHHhCCc
Confidence 8999999999999987
No 17
>PRK07529 AMP-binding domain protein; Validated
Probab=100.00 E-value=2.2e-33 Score=248.46 Aligned_cols=241 Identities=19% Similarity=0.191 Sum_probs=185.0
Q ss_pred CcCchhhhHHHHHHHHHHhCCCceEEEec-------CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH
Q psy4550 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDH-------DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79 (251)
Q Consensus 7 ~~~~~~~~l~~~l~~~~~~~~~~~a~~~~-------~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~ 79 (251)
.+.....++.++|.+.++++|+++|+.+. .++++||+||.+++.++|+.|+++|+++||+|+++++|++++++
T Consensus 19 ~~~~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~ 98 (632)
T PRK07529 19 AARDLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHF 98 (632)
T ss_pred hhhcCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 33345568999999999999999999752 35689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh-----hhhhc----c-CCCee-eecc-----------
Q psy4550 80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-----DRLER----T-SVPKV-KLEN----------- 137 (251)
Q Consensus 80 ~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~----~-~~~~~-~~~~----------- 137 (251)
+++||+.+| +++|++|.++++++.++++.++++++|+++.+. ++... . ....+ ....
T Consensus 99 ~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 177 (632)
T PRK07529 99 ALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLA 177 (632)
T ss_pred HHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccccc
Confidence 999999999 579999999999999999999999999976532 11111 0 11111 1110
Q ss_pred -------------hhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCCh
Q psy4550 138 -------------DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204 (251)
Q Consensus 138 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~ 204 (251)
++....... ............++++++++|||||||.||+|.+||++++.++......+++.++|+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~ 256 (632)
T PRK07529 178 VPLIRRKAHARILDFDAELARQ-PGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDT 256 (632)
T ss_pred ccccccccccccCCHHHHHhcC-CCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCE
Confidence 111111111 000011122346689999999999999999999999999998888888888899999
Q ss_pred hhhhHHHH------HHHHHhhhcCccEEEecCccccC---chHHHhhhhccccC
Q psy4550 205 EACNVFFV------WEMLRPLTQGIPMYVISDEVIYD---PPRLTSGWVRLPLN 249 (251)
Q Consensus 205 ~~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~---~~~~~~~i~~~~vt 249 (251)
+++.+|++ ..++.++..|+++++.++....+ ...+++.++++++|
T Consensus 257 ~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt 310 (632)
T PRK07529 257 VFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRIN 310 (632)
T ss_pred EEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCe
Confidence 98866543 24678899999999987522223 35788999999987
No 18
>PRK07638 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.2e-33 Score=240.75 Aligned_cols=227 Identities=16% Similarity=0.285 Sum_probs=184.9
Q ss_pred hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~ 93 (251)
++.+.|.+.++++|+++|+.+ .++++||.||.+++.++|.+|.+.|. +|++|+++++|+++++++++||+++|++++|
T Consensus 2 ~~~~~~~~~a~~~p~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (487)
T PRK07638 2 GITKEYKKHASLQPNKIAIKE-NDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP 79 (487)
T ss_pred ChHHHHHHHHHhCCCCeEEec-CCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 578899999999999999985 67789999999999999999999984 7999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCC
Q psy4550 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTT 173 (251)
Q Consensus 94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 173 (251)
+++..+.+++.++++.++++++++++.....+.......+... .+........ ..........+++++|+||||||
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGtT 155 (487)
T PRK07638 80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID-EWKRMIEKYL---PTYAPIENVQNAPFYMGFTSGST 155 (487)
T ss_pred cCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEeh-hhhhhhhhcc---ccccccccCCCCcEEEEeCCCCC
Confidence 9999999999999999999999999866555433222222221 1111111110 00111223346789999999999
Q ss_pred CCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH-----HHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 174 GKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF-----FVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 174 G~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
|.||||+++|++++.++......+++.++|+++...+ +..+++.++..|+++++.+. ++|..+++.|+++++
T Consensus 156 G~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~---~~~~~~~~~i~~~~~ 232 (487)
T PRK07638 156 GKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRK---FIPNQVLDKLETENI 232 (487)
T ss_pred CCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCC---CCHHHHHHHHHHcCC
Confidence 9999999999999999888888889999998865332 23467889999999999887 999999999999998
Q ss_pred C
Q psy4550 249 N 249 (251)
Q Consensus 249 t 249 (251)
|
T Consensus 233 t 233 (487)
T PRK07638 233 S 233 (487)
T ss_pred e
Confidence 7
No 19
>PLN02654 acetate-CoA ligase
Probab=100.00 E-value=1.7e-33 Score=250.32 Aligned_cols=233 Identities=21% Similarity=0.270 Sum_probs=176.8
Q ss_pred HHHHHHHHHH-hCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 15 LHYMFRNQAK-RTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 15 l~~~l~~~~~-~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
..+++.++++ .+|+++|+++.. ++++||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus 90 ~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~G 169 (666)
T PLN02654 90 CYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIG 169 (666)
T ss_pred HHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 3567777765 489999997521 3689999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhc-------------c-----CCCeeee-cchh----------
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER-------------T-----SVPKVKL-ENDF---------- 139 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-------------~-----~~~~~~~-~~~~---------- 139 (251)
++++|+++.++.+++.+++++++++++|+++......+. . ....+.. ....
T Consensus 170 av~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (666)
T PLN02654 170 AVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQ 249 (666)
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccc
Confidence 999999999999999999999999999998764322110 0 0000000 0000
Q ss_pred ------hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHH-HHHHHHHhCCCCCCChhhhhHHH-
Q psy4550 140 ------LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH-AYKWRHRAYPYDEDDREACNVFF- 211 (251)
Q Consensus 140 ------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~- 211 (251)
+.... .............++++++|+|||||||.||||+++|.+++. ........++++++|++++..++
T Consensus 250 ~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 327 (666)
T PLN02654 250 EGRDVWWQDVV--PNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCG 327 (666)
T ss_pred cCCcccHHHHh--hcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCch
Confidence 00000 000000111224678999999999999999999999999764 44556667889999998775432
Q ss_pred -----HHHHHHhhhcCccEEEecCc-cccCchHHHhhhhccccC
Q psy4550 212 -----VWEMLRPLTQGIPMYVISDE-VIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 212 -----~~~~~~~l~~G~~~v~~~~~-~~~~~~~~~~~i~~~~vt 249 (251)
.+.++.+|+.|+++++.+.. ..+++..+++.|++++||
T Consensus 328 ~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt 371 (666)
T PLN02654 328 WITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVT 371 (666)
T ss_pred hhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCe
Confidence 34567899999999998742 235899999999999998
No 20
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=100.00 E-value=2.8e-33 Score=247.76 Aligned_cols=236 Identities=19% Similarity=0.215 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
...++|.++++.+|+++|+++. +++.+||+||.+++.++|++|+++|+++||+|+++++|+++++++++||+++|
T Consensus 53 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~G 132 (628)
T TIGR02316 53 LCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIG 132 (628)
T ss_pred HHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 4467888888889999999852 23679999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hh----hcc---CCCeeeecchh------------h
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RL----ERT---SVPKVKLENDF------------L 140 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~----~~~---~~~~~~~~~~~------------~ 140 (251)
++++|+++.++.+++.+++++++++++|+++.... .+ ... ....+...... +
T Consensus 133 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 212 (628)
T TIGR02316 133 AIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDY 212 (628)
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccH
Confidence 99999999999999999999999999999764311 11 100 11112221100 0
Q ss_pred hhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHH-HHHHHHHhCCCCCCChhhhhHHH------HH
Q psy4550 141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH-AYKWRHRAYPYDEDDREACNVFF------VW 213 (251)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~------~~ 213 (251)
........ ..........++++++|+|||||||.||||+++|.++.. ........++++++|++++..++ .+
T Consensus 213 ~~~~~~~~-~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~ 291 (628)
T TIGR02316 213 AALRTQHE-DAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSY 291 (628)
T ss_pred HHHhhccc-cCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhH
Confidence 00000000 001111224678999999999999999999999999764 34455667788999988765432 35
Q ss_pred HHHHhhhcCccEEEecCc-cccCchHHHhhhhccccCC
Q psy4550 214 EMLRPLTQGIPMYVISDE-VIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 214 ~~~~~l~~G~~~v~~~~~-~~~~~~~~~~~i~~~~vt~ 250 (251)
.++.++..|+++++.+.. ..+++..+++.|++++||.
T Consensus 292 ~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~ 329 (628)
T TIGR02316 292 IVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRT 329 (628)
T ss_pred HHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeE
Confidence 578899999999998741 2468999999999999983
No 21
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=100.00 E-value=3.9e-33 Score=239.91 Aligned_cols=227 Identities=24% Similarity=0.289 Sum_probs=188.9
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
|.++.++|.+.+.++|+++|+.+ .++.+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++|++++|+++
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 79 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEF-EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVA 79 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEe-CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEE
Confidence 45899999999999999999985 56789999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSG 171 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 171 (251)
+|+++..+.+++.++++.++++.+++++...+...... ... +. ...... ...........++++++++||||
T Consensus 80 v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~--~~~----~~-~~~~~~-~~~~~~~~~~~~~~~a~i~~TSG 151 (483)
T PRK03640 80 VLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI--SVK----FA-ELMNGP-KEEAEIQEEFDLDEVATIMYTSG 151 (483)
T ss_pred EecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc--ccc----HH-HHhhcc-cccCCCCCCCCCCCeEEEEeCCC
Confidence 99999999999999999999999999877655432211 000 11 111110 11112223456789999999999
Q ss_pred CCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecCccccCchHHHhhhhcc
Q psy4550 172 TTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRL 246 (251)
Q Consensus 172 tTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~ 246 (251)
|||.||+|.+||.++...+......++++++|+++..+|+++ .++.++..|+++++.+. +++..+++.++++
T Consensus 152 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~ 228 (483)
T PRK03640 152 TTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEK---FDAEKINKLLQTG 228 (483)
T ss_pred cCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCC---CCHHHHHHHHHHh
Confidence 999999999999999988877777889999999988765533 35778899999999987 8999999999999
Q ss_pred ccCC
Q psy4550 247 PLNG 250 (251)
Q Consensus 247 ~vt~ 250 (251)
++|.
T Consensus 229 ~~t~ 232 (483)
T PRK03640 229 GVTI 232 (483)
T ss_pred CCcE
Confidence 9974
No 22
>PRK13388 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.3e-33 Score=244.34 Aligned_cols=229 Identities=18% Similarity=0.204 Sum_probs=184.6
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
.++.++|.+.+ .|+++|+++ .+..+||.||.+++.++|..|.+.|+ ++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~-~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~ 79 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRY-GDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVL 79 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEE
Confidence 47888887764 699999985 67789999999999999999999999 799999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC---CCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEe
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS---VPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVY 168 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 168 (251)
+|++|..+.+++.++++.+++++++++++..+.+.... ...+............... ...+.....++++++++|
T Consensus 80 v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~ 157 (540)
T PRK13388 80 VGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTPAYAELVAAAG--ALTPHREVDAMDPFMLIF 157 (540)
T ss_pred EEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccchhhhhhhcccc--CcCCCCCCCCCCeEEEEE
Confidence 99999999999999999999999999987765554321 1222222111111111000 011122356789999999
Q ss_pred ccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550 169 SSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEVIYDPPRLTSG 242 (251)
Q Consensus 169 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 242 (251)
||||||.||||.++|+++...+......+++.++|+++..+++++ .++.++..|+++++.+. +++..+++.
T Consensus 158 TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~ 234 (540)
T PRK13388 158 TSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAK---FSASGFLDD 234 (540)
T ss_pred CCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCC---CCHHHHHHH
Confidence 999999999999999999998888888899999999877655432 23457899999998876 899999999
Q ss_pred hhccccC
Q psy4550 243 WVRLPLN 249 (251)
Q Consensus 243 i~~~~vt 249 (251)
|+++++|
T Consensus 235 i~~~~vt 241 (540)
T PRK13388 235 VRRYGAT 241 (540)
T ss_pred HHHhCCe
Confidence 9999987
No 23
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=100.00 E-value=2.2e-33 Score=250.43 Aligned_cols=239 Identities=21% Similarity=0.220 Sum_probs=178.8
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEe-----------cCCC-----------eeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVD-----------HDGR-----------SITFKQLDEWTDIVGTYLINQGCIVGSTV 67 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~-----------~~~~-----------~~T~~~l~~~~~~~a~~L~~~g~~~g~~V 67 (251)
+...++.++|.+.++++|+++|+.. .+++ .+||+|+.+++.++|.+|.++|+++||+|
T Consensus 55 ~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~V 134 (696)
T PLN02387 55 EGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERV 134 (696)
T ss_pred CCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 4557999999999999999999931 1222 38999999999999999999999999999
Q ss_pred EEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCee-eecchh--
Q psy4550 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKV-KLENDF-- 139 (251)
Q Consensus 68 ~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~-~~~~~~-- 139 (251)
+++++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++++..+.+.... ...+ ..+...
T Consensus 135 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~ 214 (696)
T PLN02387 135 AIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVD 214 (696)
T ss_pred EEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCch
Confidence 99999999999999999999999999999999999999999999999999987665543321 1111 111100
Q ss_pred ---------------hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC-CCCCCC
Q psy4550 140 ---------------LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY-PYDEDD 203 (251)
Q Consensus 140 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~ 203 (251)
+..+...... .........++|+++|+|||||||.||||++||+|+.+++......+ ++.++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d 293 (696)
T PLN02387 215 SDSSLSGSSNWTVSSFSEVEKLGKE-NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKND 293 (696)
T ss_pred hhhhhhccCCcEEEEHHHHHHhhcc-CCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCC
Confidence 0001111111 01122234679999999999999999999999999999888766554 578899
Q ss_pred hhhhhHHHHHH-----HHHhhhcCccEEEecCccccC-----chHHHhhhhccccC
Q psy4550 204 REACNVFFVWE-----MLRPLTQGIPMYVISDEVIYD-----PPRLTSGWVRLPLN 249 (251)
Q Consensus 204 ~~~~~~~~~~~-----~~~~l~~G~~~v~~~~~~~~~-----~~~~~~~i~~~~vt 249 (251)
++++.+|+.|. .+.++..|+++.+.......+ +..+++.++++++|
T Consensus 294 ~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT 349 (696)
T PLN02387 294 VYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPT 349 (696)
T ss_pred EEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCc
Confidence 99887776542 234466777776654311111 24456678888877
No 24
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=1e-33 Score=286.40 Aligned_cols=233 Identities=27% Similarity=0.425 Sum_probs=196.4
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
+...++.++|.++++++|+++|+++ +++++||+||.++++++|+.|.++|+++|++|+++++|+++++++++||+++|+
T Consensus 3092 ~~~~~~~~l~~~~a~~~p~~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa 3170 (3956)
T PRK12467 3092 PSERLVHQLIEAQVARTPEAPALVF-GDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGG 3170 (3956)
T ss_pred CccccHHHHHHHHHHhCCCcceEee-CCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCc
Confidence 3446899999999999999999985 677899999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-CCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEe
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-VPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVY 168 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 168 (251)
+++|++|..+.+++.+++++++++++++++...+.+.... ...+..+..... ............++++++|+|
T Consensus 3171 ~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~ii~ 3244 (3956)
T PRK12467 3171 AYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLN------GYSENNPSTRVMGENLAYVIY 3244 (3956)
T ss_pred EeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecchhhc------ccCCCCCcccCCCCceEEEEE
Confidence 9999999999999999999999999999987765543221 122222211100 111112233457789999999
Q ss_pred ccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhh
Q psy4550 169 SSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGW 243 (251)
Q Consensus 169 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i 243 (251)
||||||+||||+++|+++.+.+......++++++|+++++.++ .+.++.+|..|+++++++ ...++|..+++.|
T Consensus 3245 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~-~~~~~~~~l~~~i 3323 (3956)
T PRK12467 3245 TSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRD-NDLWDPEELWQAI 3323 (3956)
T ss_pred ccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECC-cccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999887654 346899999999999988 4468999999999
Q ss_pred hccccCC
Q psy4550 244 VRLPLNG 250 (251)
Q Consensus 244 ~~~~vt~ 250 (251)
++++||.
T Consensus 3324 ~~~~vt~ 3330 (3956)
T PRK12467 3324 HAHRISI 3330 (3956)
T ss_pred HHcCCEE
Confidence 9999973
No 25
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=3.8e-33 Score=243.40 Aligned_cols=235 Identities=23% Similarity=0.295 Sum_probs=190.0
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
..++.++|.+.++++|+++|+++ .++++||+||.+++.++|..|.+. |+++||+|+++++|+++++++++||+++|++
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~-~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 87 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVF-YGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAV 87 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceee-cCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcE
Confidence 34799999999999999999984 677899999999999999999999 9999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--hhhh-----------------------
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--DFLS----------------------- 141 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~~~~----------------------- 141 (251)
++|++|..+.+++.++++.+++++++++++..+.+... ....+.... ....
T Consensus 88 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (546)
T PRK08314 88 VVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPG 167 (546)
T ss_pred EeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccccccccccccccccc
Confidence 99999999999999999999999999998776554332 111111100 0000
Q ss_pred ---hhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------H
Q psy4550 142 ---KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------V 212 (251)
Q Consensus 142 ---~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~ 212 (251)
..................++++++|+|||||||.||+|.++|+++..++......+++..+|++++.+++ .
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 247 (546)
T PRK08314 168 GVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMV 247 (546)
T ss_pred ccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHH
Confidence 0000000000112234567899999999999999999999999999999888888889999998876543 2
Q ss_pred HHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 213 WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 213 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+.++.++..|+++++.+. +++..+++.++++++|.
T Consensus 248 ~~~~~~l~~G~~i~~~~~---~~~~~~~~~i~~~~~t~ 282 (546)
T PRK08314 248 HSMNAPIYAGATVVLMPR---WDREAAARLIERYRVTH 282 (546)
T ss_pred HHHHHHHHcCCeEEecCC---CCHHHHHHHHHHhcCce
Confidence 356788999999999987 89999999999999974
No 26
>PRK13382 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.1e-33 Score=243.46 Aligned_cols=230 Identities=20% Similarity=0.263 Sum_probs=184.9
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.++.++|.+.++++|+++|+.+ +++.+||+||.++++++|.+|.++|+++|++|+++++|+++++++++||+++|++++
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLID-ELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEe-CCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 4689999999999999999985 567899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----C-CCe-eeecch----hhhhhhhhhhcccCCCCCCCCCCC
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----S-VPK-VKLEND----FLSKMISENEKLHNVDFPQVGLDD 162 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 162 (251)
|+++..+.+++.++++.++++++|++++....+... . ... +..... .......... .......+++
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 197 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHA----GQRPEPTGRK 197 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhccC----cCCCCCCCCC
Confidence 999999999999999999999999998765543321 0 111 111110 0011111000 1111234678
Q ss_pred eEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCccccCch
Q psy4550 163 IAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDEVIYDPP 237 (251)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~~~~ 237 (251)
.++++|||||||.||||+++|+++..........+.+..+++++...|++ ..++.++..|+++++... +++.
T Consensus 198 ~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~---~~~~ 274 (537)
T PRK13382 198 GRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRR---FDPE 274 (537)
T ss_pred CeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCC---cCHH
Confidence 89999999999999999999999988888777788888888886544332 346888999999998876 9999
Q ss_pred HHHhhhhccccCC
Q psy4550 238 RLTSGWVRLPLNG 250 (251)
Q Consensus 238 ~~~~~i~~~~vt~ 250 (251)
.+++.|+++++|.
T Consensus 275 ~~~~~i~~~~vt~ 287 (537)
T PRK13382 275 ATLDLIDRHRATG 287 (537)
T ss_pred HHHHHHHHhCCEE
Confidence 9999999999873
No 27
>PLN03052 acetate--CoA ligase; Provisional
Probab=100.00 E-value=5.8e-33 Score=248.10 Aligned_cols=231 Identities=18% Similarity=0.196 Sum_probs=173.5
Q ss_pred HHHHHHHHhCCCceEEEecCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 17 YMFRNQAKRTPDKIAVVDHDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 17 ~~l~~~~~~~~~~~a~~~~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
..|.++..++|+++|++..+. +++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||.++|+
T Consensus 179 ~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Ga 258 (728)
T PLN03052 179 CCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGC 258 (728)
T ss_pred HHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence 345555567899999985321 4799999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hhhcc-CCCeeeec--------------chhhhhhhh
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RLERT-SVPKVKLE--------------NDFLSKMIS 145 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~-~~~~~~~~--------------~~~~~~~~~ 145 (251)
+++|++|.++.+++.+++++++++++|+++.... .+... ....+.+. ..+.+....
T Consensus 259 v~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
T PLN03052 259 VVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLAR 338 (728)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccccCCccHHHHHhc
Confidence 9999999999999999999999999999875421 11100 00111111 011111111
Q ss_pred hhhc--ccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhH-----HHHHHHHHh
Q psy4550 146 ENEK--LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNV-----FFVWEMLRP 218 (251)
Q Consensus 146 ~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 218 (251)
.... ..........++++++|+|||||||.||||+++|.+++.........+++.++|+++... ...+.++.+
T Consensus 339 ~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~ 418 (728)
T PLN03052 339 ANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYAS 418 (728)
T ss_pred cccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHHHHHHHH
Confidence 0000 000111123558999999999999999999999999887776666667889999887543 223456789
Q ss_pred hhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 219 LTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 219 l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
|..|+++++.+. ..++..+++.+++++||
T Consensus 419 L~~Gat~vl~~g--~p~~~~~~~~i~~~~vT 447 (728)
T PLN03052 419 LLNGATLALYNG--SPLGRGFAKFVQDAKVT 447 (728)
T ss_pred HHhCCEEEEeCC--CCCCChHHHHHHHHCCC
Confidence 999999999875 25677899999999998
No 28
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=100.00 E-value=2.5e-33 Score=265.87 Aligned_cols=230 Identities=26% Similarity=0.464 Sum_probs=192.3
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.++.++|.+.++++|+++|+++ +++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 458 ~~l~~~~~~~~~~~p~~~Al~~-~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~v 536 (1296)
T PRK10252 458 TTLSALVAQQAAKTPDAPALAD-ARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWL 536 (1296)
T ss_pred CCHHHHHHHHHHhCCCCeEEEc-CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 5799999999999999999985 677899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCC
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGT 172 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 172 (251)
|++|..+.+++.++++++++++++++++..+.+.... .+.... .. ....... ........++++++|+|||||
T Consensus 537 pld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~a~i~~TSGS 609 (1296)
T PRK10252 537 PLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVP--DLTSLC-YN-APLAPQG---AAPLQLSQPHHTAYIIFTSGS 609 (1296)
T ss_pred ecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCC--Cceeee-cc-ccccccc---CCCCCCCCCCCeEEEEECCCC
Confidence 9999999999999999999999999987665554321 110000 00 0000000 011122357899999999999
Q ss_pred CCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhccc
Q psy4550 173 TGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLP 247 (251)
Q Consensus 173 TG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~ 247 (251)
||.||||+++|+++.+.+......+++.++|++++..++ .+.++.++..|+++++.+.....+|..+++.|++++
T Consensus 610 TG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~ 689 (1296)
T PRK10252 610 TGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYG 689 (1296)
T ss_pred CCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999999875533 456789999999999988766689999999999999
Q ss_pred cCC
Q psy4550 248 LNG 250 (251)
Q Consensus 248 vt~ 250 (251)
||.
T Consensus 690 vt~ 692 (1296)
T PRK10252 690 VTT 692 (1296)
T ss_pred CeE
Confidence 973
No 29
>PRK05852 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.3e-33 Score=243.19 Aligned_cols=249 Identities=18% Similarity=0.199 Sum_probs=190.5
Q ss_pred CCCCCCCcCchhhhHHHHHHHHHHhCCCceEEEecCC-CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH
Q psy4550 1 MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDG-RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79 (251)
Q Consensus 1 m~~~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~-~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~ 79 (251)
|..-..++.+...++.++|.+.++++|+++|+++.++ +.+||+||.+++.++|++|.+.|+++||+|+++++|++++++
T Consensus 4 ~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~ 83 (534)
T PRK05852 4 MGGAAPMASDFGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVV 83 (534)
T ss_pred cccccchhhhhcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHH
Confidence 4444556677788999999999999999999986443 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC---C-eeeecchh-------hhhhhhhhh
Q psy4550 80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV---P-KVKLENDF-------LSKMISENE 148 (251)
Q Consensus 80 ~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~-~~~~~~~~-------~~~~~~~~~ 148 (251)
+++||+++|++++|++|..+.+++.++++.++++.+|++............ + .+...... .........
T Consensus 84 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (534)
T PRK05852 84 ALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATE 163 (534)
T ss_pred HHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccccccC
Confidence 999999999999999999999999999999999999987653322111100 0 01111000 000000000
Q ss_pred cccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcC
Q psy4550 149 KLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQG 222 (251)
Q Consensus 149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G 222 (251)
............++.++++|||||||.||||.++|+++...+......+++..+|++++++++. ..++.++..|
T Consensus 164 ~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g 243 (534)
T PRK05852 164 PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASG 243 (534)
T ss_pred CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcC
Confidence 0000111122346789999999999999999999999999998888888999999888765432 2467788899
Q ss_pred ccEEEecCccccCchHHHhhhhccccCC
Q psy4550 223 IPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+++++++. ..+++..+++.|+++++|.
T Consensus 244 ~~~~~~~~-~~~~~~~~~~~i~~~~~t~ 270 (534)
T PRK05852 244 GAVLLPAR-GRFSAHTFWDDIKAVGATW 270 (534)
T ss_pred CeEEeCCC-cCcCHHHHHHHHHHcCCcE
Confidence 98887542 2488999999999999873
No 30
>PLN03102 acyl-activating enzyme; Provisional
Probab=100.00 E-value=5.6e-33 Score=243.73 Aligned_cols=232 Identities=16% Similarity=0.168 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.++.++|.+.++++|+++|+.. +++.+||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++++
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~-~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~v 92 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIY-GKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLN 92 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEE-CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEe
Confidence 5789999999999999999974 677899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----------CCCeeeecch------------hhhhhhhhhhc
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----------SVPKVKLEND------------FLSKMISENEK 149 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----------~~~~~~~~~~------------~~~~~~~~~~~ 149 (251)
|++|..+.+++.++++.++++++|++++..+...+. ..+.+.++.. +...... ...
T Consensus 93 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 171 (579)
T PLN03102 93 PINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQR-GEP 171 (579)
T ss_pred eccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhc-cCC
Confidence 999999999999999999999999988765443321 1112221110 0000000 000
Q ss_pred ccC---CCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhc
Q psy4550 150 LHN---VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQ 221 (251)
Q Consensus 150 ~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~ 221 (251)
... .......++++++|+|||||||.||+|+++|+++..........+++...++++..+|++| ..+.++..
T Consensus 172 ~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~ 251 (579)
T PLN03102 172 TPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAAR 251 (579)
T ss_pred CCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHh
Confidence 000 0011235689999999999999999999999997655544444555666677665554432 34667889
Q ss_pred CccEEEecCccccCchHHHhhhhccccC
Q psy4550 222 GIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 222 G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
|+++++.+. +++..+++.|+++++|
T Consensus 252 g~~~v~~~~---~~~~~~~~~i~~~~~t 276 (579)
T PLN03102 252 GGTSVCMRH---VTAPEIYKNIEMHNVT 276 (579)
T ss_pred cCcEEeecc---CChHHHHHHHHHcCCe
Confidence 999999887 8899999999999998
No 31
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=1.5e-33 Score=285.33 Aligned_cols=237 Identities=26% Similarity=0.433 Sum_probs=196.7
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
.+...++.++|.++++++|+++|+++ +++.+||+||.++++++|+.|.++|+++|++|+++++++++++++++||+++|
T Consensus 1570 ~~~~~~~~~~~~~~a~~~p~~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG 1648 (3956)
T PRK12467 1570 YPLARLVHQLIEDQAAATPEAVALVF-GEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAG 1648 (3956)
T ss_pred CCccccHHHHHHHHHHhCCCCeEEEe-CCcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccC
Confidence 34456899999999999999999985 67789999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-CCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEE
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV 167 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 167 (251)
++++|++|..+.+++.++++++++++++++++..+.+... ....+..... ..... ............++++++|+
T Consensus 1649 ~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~ayii 1724 (3956)
T PRK12467 1649 GAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQE-DDWLE---GYSDSNPAVNLAPQNLAYVI 1724 (3956)
T ss_pred ceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEeccc-cchhc---cCCCCCCCCCCCCcCcEEEE
Confidence 9999999999999999999999999999988765544321 1122222111 00000 01111222345678999999
Q ss_pred eccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550 168 YSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSG 242 (251)
Q Consensus 168 ~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 242 (251)
|||||||+||||+++|+++.+.+......++++++|+++++.++ .+.++.++..|+++++.+.....+|..+++.
T Consensus 1725 yTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~ 1804 (3956)
T PRK12467 1725 YTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQL 1804 (3956)
T ss_pred ECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999876544 3467899999999999987666799999999
Q ss_pred hhccccCC
Q psy4550 243 WVRLPLNG 250 (251)
Q Consensus 243 i~~~~vt~ 250 (251)
|++++||.
T Consensus 1805 i~~~~vt~ 1812 (3956)
T PRK12467 1805 IERQQVTT 1812 (3956)
T ss_pred HHHcCCeE
Confidence 99999973
No 32
>PRK12582 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=4.1e-33 Score=246.55 Aligned_cols=243 Identities=16% Similarity=0.206 Sum_probs=179.5
Q ss_pred CCCcCchhhhHHHHHHHHHHhCCCceEEEecCC-----CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH
Q psy4550 5 NLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79 (251)
Q Consensus 5 ~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~-----~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~ 79 (251)
+++..+...++.++|.+.++++|+++|+++.+. +.+||+||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus 41 ~~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~ 120 (624)
T PRK12582 41 RHPLGPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHAL 120 (624)
T ss_pred CCCCCCcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHH
Confidence 455666778999999999999999999985332 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCeEeeCCCCCCH-----HHHHHHHhhcCccEEEEccch--hhhhh---ccCCCeeeecch-------hhhh
Q psy4550 80 SYIAIHKAGGGYLPLETSYPP-----ALLESVLDDAKPSIVITKGEY--MDRLE---RTSVPKVKLEND-------FLSK 142 (251)
Q Consensus 80 ~~~a~~~~G~~~v~i~~~~~~-----~~l~~~l~~~~~~~vi~~~~~--~~~~~---~~~~~~~~~~~~-------~~~~ 142 (251)
+++||+++|++++|++|.++. +++.++++.++++++|+++.. ...+. ......+..... .+..
T Consensus 121 ~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 200 (624)
T PRK12582 121 MTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFAD 200 (624)
T ss_pred HHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCCCcccccccHHH
Confidence 999999999999999998874 899999999999999998642 11111 111222222110 0011
Q ss_pred hhhhhhcc-cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCC---CChhhhhHHHHH-----
Q psy4550 143 MISENEKL-HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDE---DDREACNVFFVW----- 213 (251)
Q Consensus 143 ~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~----- 213 (251)
........ .........++++++|+|||||||.||||++||+++..+.......++... .++.++++|++|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~ 280 (624)
T PRK12582 201 LAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGN 280 (624)
T ss_pred HhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHH
Confidence 11100000 000112345689999999999999999999999999988776655555444 467777666543
Q ss_pred -HHHHhhhcCccEEEecCccccCch---HHHhhhhccccC
Q psy4550 214 -EMLRPLTQGIPMYVISDEVIYDPP---RLTSGWVRLPLN 249 (251)
Q Consensus 214 -~~~~~l~~G~~~v~~~~~~~~~~~---~~~~~i~~~~vt 249 (251)
.++.++..|+++++.+. .+++. .+++.++++++|
T Consensus 281 ~~~~~~l~~G~tvvl~~~--~~~~~~~~~~~~~i~~~~~t 318 (624)
T PRK12582 281 ANFNGLLWGGGTLYIDDG--KPLPGMFEETIRNLREISPT 318 (624)
T ss_pred HHHHHHHhCceEEEEcCC--CcccchHHHHHHHHHhcCCe
Confidence 34567899999999764 24443 456677788776
No 33
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=100.00 E-value=7e-33 Score=241.74 Aligned_cols=236 Identities=17% Similarity=0.228 Sum_probs=184.0
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~ 87 (251)
.+...++.+++.+.++++|+++|+++. +++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++
T Consensus 24 ~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 103 (546)
T PLN02330 24 VPDKLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAA 103 (546)
T ss_pred CCCCCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHh
Confidence 345578999999999999999999863 4678999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecc-------hhhhhhhhhhhcccCCCCCCCCC
Q psy4550 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN-------DFLSKMISENEKLHNVDFPQVGL 160 (251)
Q Consensus 88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
|++++|+++..+.+++.++++.++++++++++...+.+.......+.... .+.+..................+
T Consensus 104 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (546)
T PLN02330 104 GGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQ 183 (546)
T ss_pred CcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCCCCCcccHHHHHhhccccCcccccccCCc
Confidence 99999999999999999999999999999998877766544433333221 11111111111000112233456
Q ss_pred CCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCC----CChhhhhHHHHH------HHHHhhhcCccEEEecC
Q psy4550 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDE----DDREACNVFFVW------EMLRPLTQGIPMYVISD 230 (251)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~ 230 (251)
+++++++|||||||.||||.++|+++..++... .++... .++.+.++|+++ .++.++..|+++++.+.
T Consensus 184 ~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~ 261 (546)
T PLN02330 184 TDLCALPFSSGTTGISKGVMLTHRNLVANLCSS--LFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSR 261 (546)
T ss_pred ccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHH--hhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecc
Confidence 889999999999999999999999998765432 223322 234454443322 34678899999999887
Q ss_pred ccccCchHHHhhhhccccC
Q psy4550 231 EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 231 ~~~~~~~~~~~~i~~~~vt 249 (251)
+++..+++.++++++|
T Consensus 262 ---~~~~~~~~~i~~~~vt 277 (546)
T PLN02330 262 ---FELRTFLNALITQEVS 277 (546)
T ss_pred ---cCHHHHHHHHHHcCCe
Confidence 9999999999999987
No 34
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=100.00 E-value=1.9e-33 Score=267.91 Aligned_cols=238 Identities=25% Similarity=0.408 Sum_probs=187.4
Q ss_pred hhHHHHHHHHHHhCCCceEEEec--------CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDH--------DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~--------~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~ 84 (251)
.++.++|.++++++|+++|+++. +++++||+||.++++++|.+|++.|+++|++|+++++|+++++++++||
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~ 315 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV 315 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 57999999999999999999742 3568999999999999999999999999999999999999999999999
Q ss_pred HHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh---hhhhcc---------CCCeeeecchh-h----------h
Q psy4550 85 HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM---DRLERT---------SVPKVKLENDF-L----------S 141 (251)
Q Consensus 85 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~---------~~~~~~~~~~~-~----------~ 141 (251)
+++|++++|++|..+.+++.++++.+++++++++.... ..+... ..+.+...... . .
T Consensus 316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1389)
T TIGR03443 316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETD 395 (1389)
T ss_pred HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccccccccccccc
Confidence 99999999999999999999999999999999875421 111100 01111111100 0 0
Q ss_pred hhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHH
Q psy4550 142 KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEML 216 (251)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 216 (251)
..................++++++|+|||||||.||||+++|+++.+.+......+++.++|+++...++ .+.++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~ 475 (1389)
T TIGR03443 396 VLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMF 475 (1389)
T ss_pred ccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHHH
Confidence 0000000000011123457899999999999999999999999999999988899999999998765543 45789
Q ss_pred HhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 217 RPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 217 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
.++..|+++++++.....+|..+++.|++++||.
T Consensus 476 ~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~ 509 (1389)
T TIGR03443 476 TPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATV 509 (1389)
T ss_pred HHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeE
Confidence 9999999999988755568999999999999983
No 35
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=100.00 E-value=3.4e-33 Score=250.54 Aligned_cols=236 Identities=16% Similarity=0.157 Sum_probs=184.2
Q ss_pred hhhhHHHHHHHHHHhCCC-ceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 11 AEGALHYMFRNQAKRTPD-KIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~-~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
+..++.++|.+.++++|+ ++|+.+.+++.+||+|+.++++++|++|.+. +++||+|+++++|+++++++++||+++|+
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~ 280 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR 280 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence 456899999999999998 5888643447899999999999999999987 59999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhc--c-----CCCeeeecch-----hhhhhh-hhhhcccCCCCC
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER--T-----SVPKVKLEND-----FLSKMI-SENEKLHNVDFP 156 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~--~-----~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~ 156 (251)
+++|+++.++.+++.++++++++++++++++..+.... . ....+..... +..... ............
T Consensus 281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (718)
T PRK08043 281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADKLWIFAHLLMPRLAQV 360 (718)
T ss_pred cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHHHHHHHHHhCCccccC
Confidence 99999999999999999999999999998776543110 0 0111111110 000000 000000001112
Q ss_pred CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEecC
Q psy4550 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVISD 230 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~~ 230 (251)
...++++++++|||||||.||||++||+++...+......++++++|++++.+|++ ..++.++..|+++++.+.
T Consensus 361 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~ 440 (718)
T PRK08043 361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPS 440 (718)
T ss_pred CCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCC
Confidence 34678999999999999999999999999999988888888999999998876553 246788999999999875
Q ss_pred ccccCchHHHhhhhccccC
Q psy4550 231 EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 231 ~~~~~~~~~~~~i~~~~vt 249 (251)
.+++..+++.++++++|
T Consensus 441 --~~~~~~~~~~i~~~~vt 457 (718)
T PRK08043 441 --PLHYRIVPELVYDRNCT 457 (718)
T ss_pred --cccHHHHHHHHHhcCCe
Confidence 36778889999999987
No 36
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=100.00 E-value=7.4e-33 Score=241.65 Aligned_cols=235 Identities=20% Similarity=0.284 Sum_probs=186.7
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~ 86 (251)
+.++.++|.+.++.+|+++|+++.+ .+.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++|+++
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~ 102 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSR 102 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 4589999999999999999998633 27899999999999999999999999999999999999999999999999
Q ss_pred HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh-----hhhhc----c-CCCe-eeecc----hhhhhhhhhh----
Q psy4550 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-----DRLER----T-SVPK-VKLEN----DFLSKMISEN---- 147 (251)
Q Consensus 87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~----~-~~~~-~~~~~----~~~~~~~~~~---- 147 (251)
+|++++|++|..+.+++.++++.++++++++++++. +...+ . .... +.... .+........
T Consensus 103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (547)
T PRK13295 103 IGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPAWEQE 182 (547)
T ss_pred cCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCccCHHHHhhCCccccc
Confidence 999999999999999999999999999999987541 11111 0 1111 11111 1111111000
Q ss_pred hcc-cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhh
Q psy4550 148 EKL-HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLT 220 (251)
Q Consensus 148 ~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~ 220 (251)
... .........++++++++|||||||.||+|+++|+++..++......+++.+++++++.+++ .++++.++.
T Consensus 183 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~ 262 (547)
T PRK13295 183 PDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVM 262 (547)
T ss_pred cccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHH
Confidence 000 0011223456899999999999999999999999999998888888899999998775543 345788899
Q ss_pred cCccEEEecCccccCchHHHhhhhccccC
Q psy4550 221 QGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 221 ~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.|+++++.+. +++..+++.++++++|
T Consensus 263 ~G~~~~~~~~---~~~~~~~~~l~~~~vt 288 (547)
T PRK13295 263 LGATAVLQDI---WDPARAAELIRTEGVT 288 (547)
T ss_pred cCCeEEeCCC---CCHHHHHHHHHHcCCc
Confidence 9999999886 8999999999999987
No 37
>PRK05857 acyl-CoA synthetase; Validated
Probab=100.00 E-value=4.8e-33 Score=242.43 Aligned_cols=235 Identities=17% Similarity=0.169 Sum_probs=178.1
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCC-CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDG-RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~-~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
.+.++.+.|.+.++++|+++|+++.++ +.+||+||.+++.++|+.|.++|+++|++|+++++|+++++++++||+++|+
T Consensus 12 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~ 91 (540)
T PRK05857 12 LPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGA 91 (540)
T ss_pred CCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCe
Confidence 456899999999999999999985443 6799999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeeeecchhhhhh-hhhhhcccCCCCCCCCCCCe
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVKLENDFLSKM-ISENEKLHNVDFPQVGLDDI 163 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 163 (251)
+++|+++..+.+++.++++.++++.+++++......... ..+.+..+....... ................++++
T Consensus 92 v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (540)
T PRK05857 92 IAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDP 171 (540)
T ss_pred EEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccccccccccCCCCCCe
Confidence 999999999999999999999999999987653221110 111222211110000 00000000011234466899
Q ss_pred EEEEeccCCCCCCceEEeccHHHHHHHHHHHH----hCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCcccc
Q psy4550 164 AYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR----AYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDEVIY 234 (251)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~ 234 (251)
++++|||||||.||||.++|+++.++...... .+++..+++.++.+|++ ...+.+++.|+++++. . .
T Consensus 172 a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~-~---~ 247 (540)
T PRK05857 172 LAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVTG-G---E 247 (540)
T ss_pred EEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEec-C---C
Confidence 99999999999999999999999876554332 23455667776655442 2457889999988764 3 6
Q ss_pred CchHHHhhhhccccC
Q psy4550 235 DPPRLTSGWVRLPLN 249 (251)
Q Consensus 235 ~~~~~~~~i~~~~vt 249 (251)
++..+++.|++|++|
T Consensus 248 ~~~~~~~~i~~~~it 262 (540)
T PRK05857 248 NTTSLLEILTTNAVA 262 (540)
T ss_pred ChhHHHHHHHhcCcc
Confidence 889999999999987
No 38
>KOG1176|consensus
Probab=100.00 E-value=4.2e-33 Score=236.77 Aligned_cols=222 Identities=24% Similarity=0.357 Sum_probs=172.3
Q ss_pred hCCCc-eEEEecC--CCeeeHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCC
Q psy4550 25 RTPDK-IAVVDHD--GRSITFKQLDEWTDIVGTYLINQG--CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99 (251)
Q Consensus 25 ~~~~~-~a~~~~~--~~~~T~~~l~~~~~~~a~~L~~~g--~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~ 99 (251)
.++++ +.++... |+.+||+|+.+++.++|.+|.++| +++||+|++++||+++++.+++||..+|+++.++||..+
T Consensus 28 ~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~ 107 (537)
T KOG1176|consen 28 VYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLT 107 (537)
T ss_pred ccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccC
Confidence 33444 6666433 599999999999999999999876 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeecch-----hhh-------hhhhhhhcccCCCCCCCCCCCe
Q psy4550 100 PALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLEND-----FLS-------KMISENEKLHNVDFPQVGLDDI 163 (251)
Q Consensus 100 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~ 163 (251)
+.++.+.++.++++++|++.+..++..... ...+.+... ... .........+.. .....++|+
T Consensus 108 ~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~ 186 (537)
T KOG1176|consen 108 ASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDG-IRPVSEDDT 186 (537)
T ss_pred HHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCCcc-cccCCCCCe
Confidence 999999999999999999999887765432 233332221 000 000011111111 345566999
Q ss_pred EEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHH-hhhcCccEEEecCccccCch
Q psy4550 164 AYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLR-PLTQGIPMYVISDEVIYDPP 237 (251)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~l~~G~~~v~~~~~~~~~~~ 237 (251)
+.++|||||||.||||++||++++.+.......+.....|+.++.+|++| .++. .+..|++++..+. |++.
T Consensus 187 ~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~---f~~~ 263 (537)
T KOG1176|consen 187 AAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRK---FDAE 263 (537)
T ss_pred EEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCC---CCHH
Confidence 99999999999999999999999999888777788888999998777654 2344 4444555555554 8999
Q ss_pred HHHhhhhccccCC
Q psy4550 238 RLTSGWVRLPLNG 250 (251)
Q Consensus 238 ~~~~~i~~~~vt~ 250 (251)
.+++.|++||||.
T Consensus 264 ~~~~~i~kykvt~ 276 (537)
T KOG1176|consen 264 LFLDLIEKYKVTH 276 (537)
T ss_pred HHHHHHHHhCEEE
Confidence 9999999999983
No 39
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.1e-32 Score=241.70 Aligned_cols=233 Identities=22% Similarity=0.291 Sum_probs=184.3
Q ss_pred hhHHHHHHHHHH-hCCCceEEEecC---CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 13 GALHYMFRNQAK-RTPDKIAVVDHD---GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 13 ~~l~~~l~~~~~-~~~~~~a~~~~~---~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
+.+.+++.+++. .+|+++|+.+.+ ++.+||+||.+++.++|.+|.++|+++||+|+++++|+++++++++||+++|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G 122 (570)
T PRK04319 43 NIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNG 122 (570)
T ss_pred eHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 445677877776 579999997532 3689999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC---Cee-eecc---------hhhhhhhhhhhcccCCCC
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV---PKV-KLEN---------DFLSKMISENEKLHNVDF 155 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~-~~~~---------~~~~~~~~~~~~~~~~~~ 155 (251)
++++|+++..+++++.++++.++++++++++...+....... ..+ .... ++...... .......
T Consensus 123 ~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 199 (570)
T PRK04319 123 AIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQ---ASDEFDI 199 (570)
T ss_pred cEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHHhh---cCCcCCc
Confidence 999999999999999999999999999998876544321111 111 1111 11111111 1111222
Q ss_pred CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEec
Q psy4550 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVIS 229 (251)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~ 229 (251)
....++++++++|||||||.||||+++|+++...+......+++.++|++++..+. .+.++.++..|+++++.+
T Consensus 200 ~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~ 279 (570)
T PRK04319 200 EWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDG 279 (570)
T ss_pred cccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEEC
Confidence 34466899999999999999999999999999888888888889999987764432 346789999999999987
Q ss_pred CccccCchHHHhhhhccccCC
Q psy4550 230 DEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 230 ~~~~~~~~~~~~~i~~~~vt~ 250 (251)
. .+++..+++.|+++++|.
T Consensus 280 ~--~~~~~~~~~~i~~~~~t~ 298 (570)
T PRK04319 280 G--RFSPERWYRILEDYKVTV 298 (570)
T ss_pred C--CCCHHHHHHHHHHcCCeE
Confidence 5 489999999999999973
No 40
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.1e-32 Score=238.61 Aligned_cols=233 Identities=22% Similarity=0.288 Sum_probs=190.5
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.+.++.+.|.+.++++|+++|+.+ +++++||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~ 81 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVF-GDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAV 81 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEe-CCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeE
Confidence 346899999999999999999985 7788999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeee-ecch----------hhhhhhhhhhcccCCC
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVK-LEND----------FLSKMISENEKLHNVD 154 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~-~~~~----------~~~~~~~~~~~~~~~~ 154 (251)
++|+++..+.+++.++++.++++++++++......... ....+. .... .+....... .....
T Consensus 82 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 159 (513)
T PRK07656 82 VVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAG--DPAER 159 (513)
T ss_pred EEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcC--CCCCC
Confidence 99999999999999999999999999988765443221 111111 1100 001111110 00122
Q ss_pred CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEe
Q psy4550 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVI 228 (251)
Q Consensus 155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~ 228 (251)
.....++++++++|||||||.||+|.++|.++...+......+++.+++++++.+++. ..++.++..|+++++.
T Consensus 160 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 239 (513)
T PRK07656 160 APEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL 239 (513)
T ss_pred cCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec
Confidence 3345778999999999999999999999999999998888889999999988765442 3468889999999998
Q ss_pred cCccccCchHHHhhhhccccC
Q psy4550 229 SDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~vt 249 (251)
+. +++..+++.|+++++|
T Consensus 240 ~~---~~~~~~~~~i~~~~~t 257 (513)
T PRK07656 240 PV---FDPDEVFRLIETERIT 257 (513)
T ss_pred Cc---CCHHHHHHHHHHhCCe
Confidence 76 8999999999999987
No 41
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=5.1e-33 Score=285.18 Aligned_cols=237 Identities=27% Similarity=0.475 Sum_probs=196.9
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
.+...++.++|.+.++++|+++|+++ +++.+||+||.++++++|+.|++.|+++|++|+++++|+++++++++||+++|
T Consensus 507 ~~~~~~~~~~~~~~a~~~p~~~A~~~-~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG 585 (5163)
T PRK12316 507 YPLQRGVHRLFEEQVERTPEAPALAF-GEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAG 585 (5163)
T ss_pred CCCCCCHHHHHHHHHHHCCCCeEEEe-CCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 34456899999999999999999985 66789999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-CCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEE
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV 167 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 167 (251)
++++|++|..+.+++.++++++++++++++....+.+... ....+..... ..... ............++++++|+
T Consensus 586 ~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~a~ii 661 (5163)
T PRK12316 586 GAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRP-AAWLE---GYSEENPGTELNPENLAYVI 661 (5163)
T ss_pred CEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCc-chhhc---cCCCCCCCCCCCCCCeEEEE
Confidence 9999999999999999999999999999998765544321 1222222111 00000 01111222345678999999
Q ss_pred eccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550 168 YSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSG 242 (251)
Q Consensus 168 ~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 242 (251)
|||||||.||||+++|+++.+.+......+++.+++++++.+++ .+.++.++..|+++++.+....++|..+++.
T Consensus 662 ~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~ 741 (5163)
T PRK12316 662 YTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVEL 741 (5163)
T ss_pred ECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHH
Confidence 99999999999999999999999999999999999999876644 3467999999999999986667899999999
Q ss_pred hhccccCC
Q psy4550 243 WVRLPLNG 250 (251)
Q Consensus 243 i~~~~vt~ 250 (251)
|++++||.
T Consensus 742 i~~~~vt~ 749 (5163)
T PRK12316 742 INREGVDT 749 (5163)
T ss_pred HHHcCCeE
Confidence 99999973
No 42
>PRK07867 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.3e-32 Score=239.06 Aligned_cols=232 Identities=16% Similarity=0.203 Sum_probs=186.9
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
|...++.++|.+.+. ++++++.. +++.+||.||.+++.++|.+|+++ |+++|++|+++++|+++++++++||+++|
T Consensus 2 ~~~~~~~~~l~~~a~--~~~~a~~~-~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G 78 (529)
T PRK07867 2 SSAPTVAELLLPLAE--DDDRGLYF-EDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSG 78 (529)
T ss_pred CccccHHHHHHHhcc--cCCceEEE-CCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 445578899988775 78899974 778999999999999999999997 89999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC--CCeeeecch-hhhhhhhhhhcccCCCCCCCCCCCeEE
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS--VPKVKLEND-FLSKMISENEKLHNVDFPQVGLDDIAY 165 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (251)
++++|+++..+.+++.++++.+++++++++++..+.+.... ...+..... +...+..... .........++++++
T Consensus 79 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~ 156 (529)
T PRK07867 79 IVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRD--AEPPFRVADPDDLFM 156 (529)
T ss_pred CEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEeccccHHHHhcccCC--CCCCcccCCccceEE
Confidence 99999999999999999999999999999988766544321 112222211 1111111111 111223456789999
Q ss_pred EEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEecCccccCchHH
Q psy4550 166 IVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVISDEVIYDPPRL 239 (251)
Q Consensus 166 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~ 239 (251)
++|||||||.||||+++|+++..+.......+++.++|+++..++++ ..++.++..|+++++.+. +++..+
T Consensus 157 i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~---~~~~~~ 233 (529)
T PRK07867 157 LIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRK---FSASGF 233 (529)
T ss_pred EEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCC---CCHHHH
Confidence 99999999999999999999998888888889999999887755443 235567889999999876 899999
Q ss_pred HhhhhccccC
Q psy4550 240 TSGWVRLPLN 249 (251)
Q Consensus 240 ~~~i~~~~vt 249 (251)
++.++++++|
T Consensus 234 ~~~i~~~~vt 243 (529)
T PRK07867 234 LPDVRRYGAT 243 (529)
T ss_pred HHHHHHhCCe
Confidence 9999999987
No 43
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=100.00 E-value=1.5e-32 Score=238.17 Aligned_cols=236 Identities=17% Similarity=0.270 Sum_probs=185.3
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecC----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~ 86 (251)
..+++.++|.+.++++|+++|+...+ .+.+||.||.++++++|..|.++|+++||+|+++++|+.+++++++||++
T Consensus 5 ~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~ 84 (517)
T PRK08008 5 GGQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAK 84 (517)
T ss_pred ccccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 34689999999999999999998532 36899999999999999999999999999999999999999999999999
Q ss_pred HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC------CCeeee-cch------h--hhhhhhhhhccc
Q psy4550 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS------VPKVKL-END------F--LSKMISENEKLH 151 (251)
Q Consensus 87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~-~~~------~--~~~~~~~~~~~~ 151 (251)
+|+++++++|..+.+++.++++.++++.++++++..+.+.+.. ...+.. ... . .......... .
T Consensus 85 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 163 (517)
T PRK08008 85 IGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPA-T 163 (517)
T ss_pred cCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCc-c
Confidence 9999999999999999999999999999999987655443211 111111 110 0 0000000000 0
Q ss_pred CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccE
Q psy4550 152 NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPM 225 (251)
Q Consensus 152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~ 225 (251)
........++++++++|||||||.||+|+++|+++............+..++++++.+|++ ..++.++..|+++
T Consensus 164 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~ 243 (517)
T PRK08008 164 LCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243 (517)
T ss_pred ccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEE
Confidence 0112234568999999999999999999999999987655444445677888887766533 3467889999999
Q ss_pred EEecCccccCchHHHhhhhccccCC
Q psy4550 226 YVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 226 v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
++.+. +++..+++.|+++++|.
T Consensus 244 ~~~~~---~~~~~~~~~i~~~~~t~ 265 (517)
T PRK08008 244 VLLEK---YSARAFWGQVCKYRATI 265 (517)
T ss_pred EEccc---cCHHHHHHHHHHcCCcE
Confidence 99887 89999999999999873
No 44
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=100.00 E-value=1.2e-32 Score=243.89 Aligned_cols=235 Identities=20% Similarity=0.264 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHhCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
...++|.++++.+|+++|++..+ .+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus 58 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 137 (625)
T TIGR02188 58 VSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIG 137 (625)
T ss_pred HHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 45677778888899999998422 2579999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hh----hccC--CCe-eeecc------------hhh
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RL----ERTS--VPK-VKLEN------------DFL 140 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~----~~~~--~~~-~~~~~------------~~~ 140 (251)
++++|+++..+.+++.+++++++++++|+++.... .+ .... ... +.... ...
T Consensus 138 av~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (625)
T TIGR02188 138 AIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWW 217 (625)
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccH
Confidence 99999999999999999999999999999875321 11 1110 111 11110 000
Q ss_pred hhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHH-HHHHhCCCCCCChhhhhHHH------HH
Q psy4550 141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK-WRHRAYPYDEDDREACNVFF------VW 213 (251)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------~~ 213 (251)
...... ...........++++++|+|||||||.||||+++|.+++.... .....+++.++|++++..+. .+
T Consensus 218 ~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~ 295 (625)
T TIGR02188 218 HDLMAK--ASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSY 295 (625)
T ss_pred HHHHhh--cCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHH
Confidence 111000 0011122345678999999999999999999999999875543 44456788899998765432 24
Q ss_pred HHHHhhhcCccEEEecC-ccccCchHHHhhhhccccCC
Q psy4550 214 EMLRPLTQGIPMYVISD-EVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 214 ~~~~~l~~G~~~v~~~~-~~~~~~~~~~~~i~~~~vt~ 250 (251)
.++.++..|+++++.+. ...+++..+++.|+++++|.
T Consensus 296 ~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~ 333 (625)
T TIGR02188 296 IVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTI 333 (625)
T ss_pred HHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeE
Confidence 57889999999999763 12358999999999999973
No 45
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=100.00 E-value=1.8e-32 Score=243.23 Aligned_cols=235 Identities=19% Similarity=0.224 Sum_probs=178.4
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEec---CC-----CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHH
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDH---DG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~---~~-----~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~ 81 (251)
+...++.++|.+.++++|+++|+... ++ +.+||+|+.+++.++|.+|.+.|+++||+|+|+++|+++|++++
T Consensus 39 ~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~ 118 (660)
T PLN02430 39 SDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAM 118 (660)
T ss_pred CCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 46679999999999999999998531 12 24799999999999999999999999999999999999999999
Q ss_pred HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh-hhhhcc-----CCCee-eecchh---------------
Q psy4550 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-DRLERT-----SVPKV-KLENDF--------------- 139 (251)
Q Consensus 82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~-----~~~~~-~~~~~~--------------- 139 (251)
+||+++|++++|+++..+++++.++++.++++++|+++... +.+... ....+ ......
T Consensus 119 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 198 (660)
T PLN02430 119 EACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTY 198 (660)
T ss_pred HHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEE
Confidence 99999999999999999999999999999999999987532 222110 11111 111100
Q ss_pred -hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh-----CCCCCCChhhhhHHHHH
Q psy4550 140 -LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA-----YPYDEDDREACNVFFVW 213 (251)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 213 (251)
+.......... ........++++++|+|||||||.||||++||+|+..++...... .+++++|++++.+|+.|
T Consensus 199 ~~~~~~~~~~~~-~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H 277 (660)
T PLN02430 199 SWIDFLHMGKEN-PSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAH 277 (660)
T ss_pred EHHHHHHhhccC-CCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHH
Confidence 00110011100 111223457899999999999999999999999999887665432 14678888888776643
Q ss_pred H-----HHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 214 E-----MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 214 ~-----~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
. .+.++..|+++++.. .++..+++.++++++|
T Consensus 278 ~~~~~~~~~~l~~G~~i~~~~----~~~~~l~~~l~~~~pt 314 (660)
T PLN02430 278 ILDRMIEEYFFRKGASVGYYH----GDLNALRDDLMELKPT 314 (660)
T ss_pred HHHHHHHHHHHHcCCEEEEeC----CChhhHHHHHHHhCCc
Confidence 2 344678899988865 3678899999999887
No 46
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.3e-32 Score=243.79 Aligned_cols=237 Identities=18% Similarity=0.157 Sum_probs=172.7
Q ss_pred hhHHHHHHHHHHh--CCCceEEEec--C---CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550 13 GALHYMFRNQAKR--TPDKIAVVDH--D---GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH 85 (251)
Q Consensus 13 ~~l~~~l~~~~~~--~~~~~a~~~~--~---~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~ 85 (251)
+...+++.++++. +|+++|++.. + .+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||.
T Consensus 59 n~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~ 138 (647)
T PTZ00237 59 NTCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCA 138 (647)
T ss_pred eHHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 3456777777654 7899999752 1 3579999999999999999999999999999999999999999999999
Q ss_pred HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch---------hhhhhcc------CCCeee-ecc------------
Q psy4550 86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY---------MDRLERT------SVPKVK-LEN------------ 137 (251)
Q Consensus 86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~------~~~~~~-~~~------------ 137 (251)
++|++++|+++.++.+++.+++++++++++|+++.. .+.+... ....+. ...
T Consensus 139 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 218 (647)
T PTZ00237 139 RIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKI 218 (647)
T ss_pred HhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccc
Confidence 999999999999999999999999999999997531 1111110 011111 100
Q ss_pred ----------hhhhhhhhhh--hcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHH-HHHHHHHHHHhCCCCCCCh
Q psy4550 138 ----------DFLSKMISEN--EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG-AVHAYKWRHRAYPYDEDDR 204 (251)
Q Consensus 138 ----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~ 204 (251)
.+.+.+.... ............++++++|+|||||||.||||+++|.+ +..........++...+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~ 298 (647)
T PTZ00237 219 ETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTV 298 (647)
T ss_pred cccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcE
Confidence 0000000000 00000112345678999999999999999999999998 5444444344556777888
Q ss_pred hhhhHH-----HHHHHHHhhhcCccEEEecCccccC----chHHHhhhhccccCC
Q psy4550 205 EACNVF-----FVWEMLRPLTQGIPMYVISDEVIYD----PPRLTSGWVRLPLNG 250 (251)
Q Consensus 205 ~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~----~~~~~~~i~~~~vt~ 250 (251)
+++..+ ++..++.++..|+++++.+.. .+. +..+++.|++++||.
T Consensus 299 ~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~-~~~p~~~~~~~~~~i~~~~vt~ 352 (647)
T PTZ00237 299 VFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGG-IIKNKHIEDDLWNTIEKHKVTH 352 (647)
T ss_pred EEEcCCCceEeeHHHHHHHHhCCcEEEEeCCC-CCCCCCchHHHHHHHHHhCeEE
Confidence 876543 233578899999999997742 122 688999999999983
No 47
>PLN02574 4-coumarate--CoA ligase-like
Probab=100.00 E-value=1.7e-32 Score=239.92 Aligned_cols=229 Identities=22% Similarity=0.350 Sum_probs=174.0
Q ss_pred HHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550 16 HYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (251)
Q Consensus 16 ~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~ 93 (251)
..++.+ +.+|+++|+++.. +.++||+||.++++++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|
T Consensus 44 ~~l~~~--~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~ 121 (560)
T PLN02574 44 SFIFSH--HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTT 121 (560)
T ss_pred HHHhcC--cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeC
Confidence 344443 6789999998743 3479999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhh---------hhhhhhhhcccCCCCCCCCCCCeE
Q psy4550 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFL---------SKMISENEKLHNVDFPQVGLDDIA 164 (251)
Q Consensus 94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 164 (251)
++|..+.+++.++++.+++++++++++..+.+.....+.+.....+. ...................+++++
T Consensus 122 l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (560)
T PLN02574 122 MNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKPVIKQDDVA 201 (560)
T ss_pred cCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCcccccccCccCcccHHHHhhcCCcccccCCCCcCCEE
Confidence 99999999999999999999999998776665443333222211110 000000000011122334568999
Q ss_pred EEEeccCCCCCCceEEeccHHHHHHHHHHHH----hCCCC-CCChhhhhHHHHH------HHHHhhhcCccEEEecCccc
Q psy4550 165 YIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR----AYPYD-EDDREACNVFFVW------EMLRPLTQGIPMYVISDEVI 233 (251)
Q Consensus 165 ~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~-~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~ 233 (251)
+++|||||||.||||++||+++...+..... .++.. .+++++.++|++| .++.++..|+++++.+.
T Consensus 202 ~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~--- 278 (560)
T PLN02574 202 AIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRR--- 278 (560)
T ss_pred EEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecC---
Confidence 9999999999999999999999987765543 22222 4566665554432 24567788999999886
Q ss_pred cCchHHHhhhhccccC
Q psy4550 234 YDPPRLTSGWVRLPLN 249 (251)
Q Consensus 234 ~~~~~~~~~i~~~~vt 249 (251)
+++..+++.|++|++|
T Consensus 279 ~~~~~~~~~i~~~~~t 294 (560)
T PLN02574 279 FDASDMVKVIDRFKVT 294 (560)
T ss_pred CCHHHHHHHHHHcCCe
Confidence 8999999999999998
No 48
>PRK09274 peptide synthase; Provisional
Probab=100.00 E-value=1.9e-32 Score=239.32 Aligned_cols=235 Identities=22% Similarity=0.282 Sum_probs=181.5
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCC---------eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHH
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGR---------SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~---------~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~ 82 (251)
..++.++|.+.++++|+++|+++.++. .+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus 5 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~l 84 (552)
T PRK09274 5 MANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTF 84 (552)
T ss_pred hhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHH
Confidence 347889999999999999999864432 79999999999999999999999999999999999999999999
Q ss_pred HHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc--chhhhhhcc---CC-Ceeeecch------hhhhhhhhhhcc
Q psy4550 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG--EYMDRLERT---SV-PKVKLEND------FLSKMISENEKL 150 (251)
Q Consensus 83 a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~--~~~~~~~~~---~~-~~~~~~~~------~~~~~~~~~~~~ 150 (251)
||+++|++++|++|..+.+++.++++.++++++|+++ ...+.+... .. ..+..... ....... ....
T Consensus 85 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~ 163 (552)
T PRK09274 85 ALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLR-DGAA 163 (552)
T ss_pred HHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCccHHHhcc-cCcc
Confidence 9999999999999999999999999999999999975 222222111 01 11111110 0011100 0000
Q ss_pred cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHHHHHHhhhcCccEEEecC
Q psy4550 151 HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISD 230 (251)
Q Consensus 151 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~ 230 (251)
.........++++++++|||||||.||+|+++|+++...+......+++.++++.++.+|+++ +..+..|+++++.+.
T Consensus 164 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~~~~g~~~~~~~~ 241 (552)
T PRK09274 164 APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFA--LFGPALGMTSVIPDM 241 (552)
T ss_pred ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHH--hhhhhhCCeEEecCc
Confidence 111223346689999999999999999999999999999988888889999998887776653 234566888887652
Q ss_pred c----cccCchHHHhhhhccccC
Q psy4550 231 E----VIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 231 ~----~~~~~~~~~~~i~~~~vt 249 (251)
. ..+++..+++.|+++++|
T Consensus 242 ~~~~~~~~~~~~~~~~i~~~~vt 264 (552)
T PRK09274 242 DPTRPATVDPAKLFAAIERYGVT 264 (552)
T ss_pred ccccccccCHHHHHHHHHHcCCe
Confidence 1 237899999999999997
No 49
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=100.00 E-value=2.6e-32 Score=238.28 Aligned_cols=234 Identities=21% Similarity=0.269 Sum_probs=186.1
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.++.++|.+.++++|+++|+++.+++.+||+|+.+++.++|++|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 102 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSV 102 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence 47899999999999999999976668999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchh-----hhhh----ccC-C-Ceeeecchhhh----hhhhhhhc-ccCCCCC
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYM-----DRLE----RTS-V-PKVKLENDFLS----KMISENEK-LHNVDFP 156 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~----~~~-~-~~~~~~~~~~~----~~~~~~~~-~~~~~~~ 156 (251)
|++|..+.+++.++++.++++++++++... +.+. ... . ..+........ ........ .......
T Consensus 103 ~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (547)
T PRK06087 103 PLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAI 182 (547)
T ss_pred ccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCcccCCC
Confidence 999999999999999999999999976431 1111 100 0 11111110000 00000000 0001122
Q ss_pred CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEecC
Q psy4550 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVISD 230 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~ 230 (251)
....+++++|+|||||||.||+|.++|.++..........+++.++|++++..++ ..+++.++..|+++++...
T Consensus 183 ~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~ 262 (547)
T PRK06087 183 TTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDI 262 (547)
T ss_pred CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCC
Confidence 3466899999999999999999999999999888888888889999998875543 2356788899999999887
Q ss_pred ccccCchHHHhhhhccccC
Q psy4550 231 EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 231 ~~~~~~~~~~~~i~~~~vt 249 (251)
+++..+++.|+++++|
T Consensus 263 ---~~~~~~~~~i~~~~~t 278 (547)
T PRK06087 263 ---FTPDACLALLEQQRCT 278 (547)
T ss_pred ---CCHHHHHHHHHHcCCC
Confidence 8999999999999987
No 50
>PRK06839 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.3e-32 Score=237.31 Aligned_cols=228 Identities=21% Similarity=0.277 Sum_probs=185.4
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
..+.+.|.+.++.+|+++|+++ +++.+||.||.++++++|++|++ .|+++|++|+++++|+++++++++||+++|+++
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~-~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~ 80 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIIT-EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIA 80 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEE-CCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 3578999999999999999985 78899999999999999999986 799999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC----CeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEE
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV----PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV 167 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 167 (251)
+|+++..+.+++..+++.+++++++++++..+.+..... ..+....++... ... .........++++++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~i~ 155 (496)
T PRK06839 81 VPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKEI-EDR----KIDNFVEKNESASFIIC 155 (496)
T ss_pred EecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecchHhh-hcc----CCCCCCCCCCCCcEEEE
Confidence 999999999999999999999999999877655433211 111111111111 111 01122344568899999
Q ss_pred eccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEecCccccCchHHHh
Q psy4550 168 YSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVISDEVIYDPPRLTS 241 (251)
Q Consensus 168 ~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~~~ 241 (251)
|||||||.||+|.++|+++..........+++..+|+++..+|++ ..++.++..|+++++.+. +++..+++
T Consensus 156 ~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~---~~~~~~~~ 232 (496)
T PRK06839 156 YTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRK---FEPTKALS 232 (496)
T ss_pred eCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccC---CCHHHHHH
Confidence 999999999999999999988777777778888999887655432 234678899999998876 89999999
Q ss_pred hhhccccC
Q psy4550 242 GWVRLPLN 249 (251)
Q Consensus 242 ~i~~~~vt 249 (251)
.++++++|
T Consensus 233 ~i~~~~~t 240 (496)
T PRK06839 233 MIEKHKVT 240 (496)
T ss_pred HHHhhCCe
Confidence 99999987
No 51
>PRK06145 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.3e-32 Score=234.96 Aligned_cols=233 Identities=19% Similarity=0.220 Sum_probs=186.5
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
|.++.++|.++++++|+++|+++ +++.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~-~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 79 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVY-RDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVF 79 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEE-CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 45788999999999999999984 77899999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhh-hcccCCCCCCCCCCCeEEEEecc
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISEN-EKLHNVDFPQVGLDDIAYIVYSS 170 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TS 170 (251)
+|+++..+.+++.++++.+++++++++++....... ....+.............. ............++++++++|||
T Consensus 80 v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 158 (497)
T PRK06145 80 LPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-ETPKIVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTS 158 (497)
T ss_pred EecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-ccceEEecCcccchhHHHhccCCCCCCCCCCCccceEEEEeCC
Confidence 999999999999999999999999998776543321 1111211111000000000 00111122345678999999999
Q ss_pred CCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550 171 GTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEVIYDPPRLTSGWV 244 (251)
Q Consensus 171 GtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~ 244 (251)
||||.||+|.+||+++...+......+++..+++++...++++ ..+.++..|+++++.+. +++..+++.++
T Consensus 159 GTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~i~ 235 (497)
T PRK06145 159 GTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHRE---FDPEAVLAAIE 235 (497)
T ss_pred CCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCc---CCHHHHHHHHH
Confidence 9999999999999999877766677788899998877655432 34678899999999887 89999999999
Q ss_pred ccccC
Q psy4550 245 RLPLN 249 (251)
Q Consensus 245 ~~~vt 249 (251)
++++|
T Consensus 236 ~~~~t 240 (497)
T PRK06145 236 RHRLT 240 (497)
T ss_pred HhCCe
Confidence 99987
No 52
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=1.3e-32 Score=282.15 Aligned_cols=235 Identities=26% Similarity=0.459 Sum_probs=194.2
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
.+...++.++|.+.++++|+++|+++ .++.+||+||.++++++|..|.++|+++|++|+++++|+++++++++||+++|
T Consensus 1999 ~~~~~~~~~~~~~~a~~~p~~~A~~~-~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aG 2077 (5163)
T PRK12316 1999 YPRGPGVHQRIAEQAARAPEAIAVVF-GDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAG 2077 (5163)
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEc-CCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhc
Confidence 34455899999999999999999985 66789999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-CCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEE
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV 167 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 167 (251)
++++|++|..+.+++.++++++++++++++++....+... ....+..... .... ............++++++|+
T Consensus 2078 a~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~a~ii 2152 (5163)
T PRK12316 2078 GAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRD--AEWA---DYPDTAPAVQLAGENLAYVI 2152 (5163)
T ss_pred eEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccch--hhhh---ccCccCCCCCCCCCCeEEEE
Confidence 9999999999999999999999999999998766544321 1112222111 0000 00111223345789999999
Q ss_pred eccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550 168 YSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSG 242 (251)
Q Consensus 168 ~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 242 (251)
|||||||+||||+++|+++.+.+......++++++|+++.+.++ .+.++.+|..|+++++.+. ..++|..+++.
T Consensus 2153 ~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~-~~~~~~~~~~~ 2231 (5163)
T PRK12316 2153 YTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDD-ELWDPEQLYDE 2231 (5163)
T ss_pred eCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCc-ccCCHHHHHHH
Confidence 99999999999999999999999999999999999999876654 3468999999999977653 35799999999
Q ss_pred hhccccCC
Q psy4550 243 WVRLPLNG 250 (251)
Q Consensus 243 i~~~~vt~ 250 (251)
|++++||.
T Consensus 2232 i~~~~vt~ 2239 (5163)
T PRK12316 2232 MERHGVTI 2239 (5163)
T ss_pred HHHcCCeE
Confidence 99999973
No 53
>PRK06164 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.4e-32 Score=238.15 Aligned_cols=238 Identities=19% Similarity=0.312 Sum_probs=188.8
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
.+...++.++|.+.++++|+++|+++ +++++||+||.+++.++|..|.+.|+++||+|+++++|+.+++++++||+++|
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~-~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G 84 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALID-EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLG 84 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEec-CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 44556899999999999999999984 67789999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh-----hhhhcc------CCCee-eecchhh---h--------hhhh
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-----DRLERT------SVPKV-KLENDFL---S--------KMIS 145 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~------~~~~~-~~~~~~~---~--------~~~~ 145 (251)
++++|+++..+.+++.++++.+++++++++++.. +.+... ....+ ....... . ....
T Consensus 85 ~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (540)
T PRK06164 85 ATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFAL 164 (540)
T ss_pred cEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccccc
Confidence 9999999999999999999999999999987642 111111 01111 1110000 0 0000
Q ss_pred hhhcc-cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhh
Q psy4550 146 ENEKL-HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPL 219 (251)
Q Consensus 146 ~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l 219 (251)
..... .........++++++++|||||||.||+|+++|+++...+......+++..++++++.+|+ ...++.++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l 244 (540)
T PRK06164 165 PDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGAL 244 (540)
T ss_pred cccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHH
Confidence 00000 0000122346789999999999999999999999999999988999999999999876654 23578899
Q ss_pred hcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 220 TQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 220 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
..|+++++.+. +++..+++.|+++++|.
T Consensus 245 ~~G~~~~~~~~---~~~~~~~~~l~~~~~t~ 272 (540)
T PRK06164 245 AGGAPLVCEPV---FDAARTARALRRHRVTH 272 (540)
T ss_pred hcCceEEecCC---CCHHHHHHHHHHhCCee
Confidence 99999999886 89999999999999973
No 54
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.3e-32 Score=243.27 Aligned_cols=234 Identities=21% Similarity=0.218 Sum_probs=173.0
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEec--------------------------CCCeeeHHHHHHHHHHHHHHHHhcCCCC
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDH--------------------------DGRSITFKQLDEWTDIVGTYLINQGCIV 63 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~--------------------------~~~~~T~~~l~~~~~~~a~~L~~~g~~~ 63 (251)
+...++.++|.+.++++|+++|+... +.+.+||+|+.++++++|..|.++|+++
T Consensus 66 ~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~ 145 (700)
T PTZ00216 66 YYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTK 145 (700)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCC
Confidence 34568999999999999999999752 2467999999999999999999999999
Q ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-------CCCeeeec
Q psy4550 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-------SVPKVKLE 136 (251)
Q Consensus 64 g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~ 136 (251)
||+|+++++|+++|+++++||+++|++++|+++..+++++.+++++++++++|++.+..+.+... ....+...
T Consensus 146 gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~ 225 (700)
T PTZ00216 146 GSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLD 225 (700)
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999987654433211 11112111
Q ss_pred c-------------hhhhhhhhhh-hcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC-----
Q psy4550 137 N-------------DFLSKMISEN-EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY----- 197 (251)
Q Consensus 137 ~-------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----- 197 (251)
. .+.+...... ............++++++|+|||||||.||||++||+|+.+++......+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~ 305 (700)
T PTZ00216 226 SLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIG 305 (700)
T ss_pred CCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccC
Confidence 1 0111111100 00001112334678999999999999999999999999998887766544
Q ss_pred CCCCCChhhhhHHHHH--H---HHHhhhcCccEEEecCccccCchHHHh-------hhhccccC
Q psy4550 198 PYDEDDREACNVFFVW--E---MLRPLTQGIPMYVISDEVIYDPPRLTS-------GWVRLPLN 249 (251)
Q Consensus 198 ~~~~~~~~~~~~~~~~--~---~~~~l~~G~~~v~~~~~~~~~~~~~~~-------~i~~~~vt 249 (251)
.+.++|++++++|+.| + ....+..|+++++. ++..+++ .++++++|
T Consensus 306 ~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~l~~~~pT 363 (700)
T PTZ00216 306 PPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG------SPRTLTDTFARPHGDLTEFRPV 363 (700)
T ss_pred CCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC------CHHHhhhhhccccchHHHcCCc
Confidence 2467888888776543 2 23346777776653 2333333 56667765
No 55
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=100.00 E-value=4.3e-32 Score=235.12 Aligned_cols=229 Identities=22% Similarity=0.321 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC
Q psy4550 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL 94 (251)
Q Consensus 15 l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i 94 (251)
+.++|...++++|+++++.+ .++++||+||.+++.++|++|++.|+.+|++|+++++|+.+++++++||+.+|++++|+
T Consensus 2 ~~~~~~~~~~~~p~~~a~~~-~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 80 (515)
T TIGR03098 2 LHHLLEDAAARLPDATALVH-HDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI 80 (515)
T ss_pred HHHHHHHHHHHCCCCeEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence 67889999999999999985 66789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC-----C-eeeecch-----------hhhhhhhhhhcccCCCCCC
Q psy4550 95 ETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV-----P-KVKLEND-----------FLSKMISENEKLHNVDFPQ 157 (251)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 157 (251)
++..+.+++..+++.+++++++++++..+.+..... . .+..... .+........ ......
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 157 (515)
T TIGR03098 81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGD---ADPPHP 157 (515)
T ss_pred CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccc---ccccCC
Confidence 999999999999999999999998776554322111 1 1111110 0001110000 012223
Q ss_pred CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCcc
Q psy4550 158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDEV 232 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~ 232 (251)
...+++++++|||||||.||+|.+||+++...+......+++..+|++++++++. ..++.++..|+++++.+.
T Consensus 158 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-- 235 (515)
T TIGR03098 158 VIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDY-- 235 (515)
T ss_pred CCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCC--
Confidence 4557899999999999999999999999999988888888899999998766543 357889999999999886
Q ss_pred ccCchHHHhhhhccccCC
Q psy4550 233 IYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 233 ~~~~~~~~~~i~~~~vt~ 250 (251)
+++..+++.++++++|.
T Consensus 236 -~~~~~~~~~i~~~~~t~ 252 (515)
T TIGR03098 236 -LLPRDVLKALEKHGITG 252 (515)
T ss_pred -CCHHHHHHHHHHcCCce
Confidence 89999999999999874
No 56
>PRK06178 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.8e-32 Score=238.12 Aligned_cols=233 Identities=24% Similarity=0.351 Sum_probs=184.9
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.++.++|.++++.+|+++|+.+ .++.+||.||.+++.++|.+|.++|+++|++|+++++|+++++++++||+++|++++
T Consensus 33 ~~l~~~l~~~a~~~p~~~al~~-~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 111 (567)
T PRK06178 33 RPLTEYLRAWARERPQRPAIIF-YGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHV 111 (567)
T ss_pred ccHHHHHHHHHHHCCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEe
Confidence 5799999999999999999975 677899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeecc--h-----------------------hhhhh
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLEN--D-----------------------FLSKM 143 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~--~-----------------------~~~~~ 143 (251)
|++|..+.+++.++++.++++++++++...+.+.+.. ...+.... . +.+..
T Consensus 112 ~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (567)
T PRK06178 112 PVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLL 191 (567)
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccccccccccHH
Confidence 9999999999999999999999999987765544321 11111100 0 00000
Q ss_pred hhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH-hCCCCCCChhhhhHHHHH------HHH
Q psy4550 144 ISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR-AYPYDEDDREACNVFFVW------EML 216 (251)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~ 216 (251)
................++++++++|||||||.||+|++||+++......... .....++|+++.++++++ +++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 271 (567)
T PRK06178 192 PALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLL 271 (567)
T ss_pred HHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHH
Confidence 0000000111223355789999999999999999999999999877654433 356778888877665432 467
Q ss_pred HhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 217 RPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 217 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.++..|+++++.+. +++..+++.++++++|
T Consensus 272 ~~l~~G~~~~l~~~---~~~~~~~~~i~~~~~t 301 (567)
T PRK06178 272 FPLFSGATLVLLAR---WDAVAFMAAVERYRVT 301 (567)
T ss_pred HHHHcCceEEEeCC---CCHHHHHHHHHHhCCe
Confidence 78999999999987 8999999999999987
No 57
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=8.8e-33 Score=281.56 Aligned_cols=235 Identities=23% Similarity=0.364 Sum_probs=195.2
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
.+...+++++|.++++++|+++|+.+ .+..+||+||.++++++|+.|.++|+++|++|+|+++++++++++++|++++|
T Consensus 3716 ~~~~~~~~~~~~~~~~~~p~~~Av~~-~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG 3794 (4334)
T PRK05691 3716 YPLEQSYVRLFEAQVAAHPQRIAASC-LDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAG 3794 (4334)
T ss_pred CccccCHHHHHHHHHHhCCCceEEEc-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhC
Confidence 34556899999999999999999985 56679999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-------CCeeeecchhhhhhhhhhhcccCCCCCCCCCC
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-------VPKVKLENDFLSKMISENEKLHNVDFPQVGLD 161 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (251)
+.++|++|..+.+++.+++++++++++++++...+...... .+.+...... . ..............++
T Consensus 3795 ~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~ 3869 (4334)
T PRK05691 3795 AGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV----Q-AGEVASHNPGIYSGPD 3869 (4334)
T ss_pred cEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc----c-cccccccCCCCCCCCC
Confidence 99999999999999999999999999999987544322110 1111111110 0 0000011222345678
Q ss_pred CeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH-----HHHHHHHhhhcCccEEEecCccccCc
Q psy4550 162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF-----FVWEMLRPLTQGIPMYVISDEVIYDP 236 (251)
Q Consensus 162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~~ 236 (251)
+++||+|||||||+||||+++|+++.+.+......++++++|+++...+ ..+.++.++..|+++++.+.....+|
T Consensus 3870 ~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~ 3949 (4334)
T PRK05691 3870 NLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDP 3949 (4334)
T ss_pred ceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCH
Confidence 9999999999999999999999999999999999999999999977553 35678999999999999998777899
Q ss_pred hHHHhhhhccccC
Q psy4550 237 PRLTSGWVRLPLN 249 (251)
Q Consensus 237 ~~~~~~i~~~~vt 249 (251)
..+++.+++++||
T Consensus 3950 ~~l~~~~~~~~vt 3962 (4334)
T PRK05691 3950 QGLLAHVQAQGIT 3962 (4334)
T ss_pred HHHHHHHHHcCCe
Confidence 9999999999997
No 58
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=100.00 E-value=4.1e-33 Score=235.53 Aligned_cols=227 Identities=29% Similarity=0.442 Sum_probs=171.0
Q ss_pred HHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC
Q psy4550 19 FRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98 (251)
Q Consensus 19 l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~ 98 (251)
|+++++++|+++|+++.+++.+||+|+.+++.++|..|+++|+++||+|+++++|+++++++++||+++|++++|++|..
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~ 80 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL 80 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence 67899999999999853778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCccEEEE----ccchhhhhhcc-C---CC--eeeecchhhh---hhhhhhhcccCCCCCC-CCCCCeE
Q psy4550 99 PPALLESVLDDAKPSIVIT----KGEYMDRLERT-S---VP--KVKLENDFLS---KMISENEKLHNVDFPQ-VGLDDIA 164 (251)
Q Consensus 99 ~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~-~---~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~ 164 (251)
+.+++.++++.+++++||+ +......+... . .. .+.+...... .+........ .. .. ..+++++
T Consensus 81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 158 (417)
T PF00501_consen 81 SEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASLSDE-PQ-SPEDSPDDPA 158 (417)
T ss_dssp SHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHHCHC-SH-STTHTTTSEE
T ss_pred ccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccccccccccccccc-cc-cCCCCcccee
Confidence 9999999999999999997 22221212111 1 11 1222211110 0110100000 00 00 0568999
Q ss_pred EEEeccCCCCCCceEEeccHHHHHHHHHHH--HhCCCCCCChhhhhHHH-----H-HHHHHhhhcCccEEEecCccccCc
Q psy4550 165 YIVYSSGTTGKPKGIVCPHRGAVHAYKWRH--RAYPYDEDDREACNVFF-----V-WEMLRPLTQGIPMYVISDEVIYDP 236 (251)
Q Consensus 165 ~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~G~~~v~~~~~~~~~~ 236 (251)
+++|||||||.||+|.++|+++.+.+.... ..++++ |++++.+|+ . ..++.++..|+++++++....+++
T Consensus 159 ~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~ 236 (417)
T PF00501_consen 159 FILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDP 236 (417)
T ss_dssp EEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHH
T ss_pred EeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999877754 333333 566654433 3 678999999999999997323346
Q ss_pred hHHHhhhhccccC
Q psy4550 237 PRLTSGWVRLPLN 249 (251)
Q Consensus 237 ~~~~~~i~~~~vt 249 (251)
..+++.++++++|
T Consensus 237 ~~~~~~i~~~~~t 249 (417)
T PF00501_consen 237 ESLLELISRYKPT 249 (417)
T ss_dssp HHHHHHHHHHTES
T ss_pred ccchhcccccccc
Confidence 8899999999987
No 59
>PRK08316 acyl-CoA synthetase; Validated
Probab=100.00 E-value=6e-32 Score=234.59 Aligned_cols=234 Identities=22% Similarity=0.238 Sum_probs=188.8
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
..++.++|...++++|+++|+++ .++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~ 88 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVF-GDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH 88 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 45899999999999999999985 66889999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeec---------chhhhhhhhhhhcccCCCCCCC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLE---------NDFLSKMISENEKLHNVDFPQV 158 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
+|+++..+.+++.++++.+++++++++++..+.+.+.. ....... ..+...................
T Consensus 89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (523)
T PRK08316 89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPDVEL 168 (523)
T ss_pred EecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCCCccCccCC
Confidence 99999999999999999999999999988765543210 0000000 0011000000000011123345
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCcc
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEV 232 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~ 232 (251)
.++++++++|||||||.||+|.+||+++..........+++.++++++..+|+++ .++.++..|+++++.+.
T Consensus 169 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~-- 246 (523)
T PRK08316 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDA-- 246 (523)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecC--
Confidence 6789999999999999999999999999998888888889999999887665432 24556889999999887
Q ss_pred ccCchHHHhhhhccccC
Q psy4550 233 IYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 233 ~~~~~~~~~~i~~~~vt 249 (251)
.++..+++.++++++|
T Consensus 247 -~~~~~~~~~i~~~~~t 262 (523)
T PRK08316 247 -PDPELILRTIEAERIT 262 (523)
T ss_pred -CCHHHHHHHHHHhCCe
Confidence 7999999999999987
No 60
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=100.00 E-value=4.7e-32 Score=235.62 Aligned_cols=231 Identities=21% Similarity=0.257 Sum_probs=186.9
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
..++.++|.++++++|+++|+++ +++.+||+||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 100 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIIC-GNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP 100 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEe-CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence 45789999999999999999985 67789999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhh--------hhhcc--CCCeeeecch------hhhhhhhhhhcccCCCC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMD--------RLERT--SVPKVKLEND------FLSKMISENEKLHNVDF 155 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 155 (251)
+++++..+.+++.++++.++++.+++++.... .+... ....+..... ....... .......
T Consensus 101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 177 (527)
T TIGR02275 101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLES---PAEPVKF 177 (527)
T ss_pred eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhC---cCccccC
Confidence 99999999999999999999999999865321 11110 1111111110 1100100 0011122
Q ss_pred CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-------HHHHhhhcCccEEEe
Q psy4550 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-------EMLRPLTQGIPMYVI 228 (251)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~G~~~v~~ 228 (251)
....++++++++|||||||.||+|++||+++..++......+.++.+|++++.+|++| +++.++..|+++++.
T Consensus 178 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~ 257 (527)
T TIGR02275 178 PPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLA 257 (527)
T ss_pred CCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEEC
Confidence 3456789999999999999999999999999999888888888999999987665433 467889999999998
Q ss_pred cCccccCchHHHhhhhccccC
Q psy4550 229 SDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~vt 249 (251)
+. +++..+++.++++++|
T Consensus 258 ~~---~~~~~~~~~i~~~~~t 275 (527)
T TIGR02275 258 PD---PSPTDCFPLIERHKVT 275 (527)
T ss_pred CC---CCHHHHHHHHHHhCCe
Confidence 76 8999999999999987
No 61
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=4.4e-32 Score=240.63 Aligned_cols=234 Identities=21% Similarity=0.274 Sum_probs=177.2
Q ss_pred HHHHHHHHHHhCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 15 LHYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 15 l~~~l~~~~~~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
..+.|.++++++|+++|+++.+ .+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 69 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 148 (637)
T PRK00174 69 SYNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGA 148 (637)
T ss_pred HHHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 3567778888899999998422 24799999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hhh----cc-CCCeeee-cc------------hhhhh
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RLE----RT-SVPKVKL-EN------------DFLSK 142 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~----~~-~~~~~~~-~~------------~~~~~ 142 (251)
+++|++|..+.+++.++++.++++++|+++.... .+. .. ....+.. .. .++..
T Consensus 149 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (637)
T PRK00174 149 VHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHE 228 (637)
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHH
Confidence 9999999999999999999999999999865421 111 00 1111111 10 00111
Q ss_pred hhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHH-HHHHhCCCCCCChhhhhHHH------HHHH
Q psy4550 143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK-WRHRAYPYDEDDREACNVFF------VWEM 215 (251)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~ 215 (251)
.... ...........++++++|+|||||||.||||+++|++++.... .....+++.++|++++..+. .+.+
T Consensus 229 ~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 306 (637)
T PRK00174 229 LVAG--ASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIV 306 (637)
T ss_pred HHhh--cCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHH
Confidence 1111 1111122345668999999999999999999999999875543 34455788888988765432 2457
Q ss_pred HHhhhcCccEEEecCc-cccCchHHHhhhhccccCC
Q psy4550 216 LRPLTQGIPMYVISDE-VIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 216 ~~~l~~G~~~v~~~~~-~~~~~~~~~~~i~~~~vt~ 250 (251)
+.++..|+++++.+.. ..+++..+++.|++++||.
T Consensus 307 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~ 342 (637)
T PRK00174 307 YGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTI 342 (637)
T ss_pred HHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeE
Confidence 8899999999997642 2358999999999999973
No 62
>PRK06060 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.9e-32 Score=243.40 Aligned_cols=225 Identities=19% Similarity=0.223 Sum_probs=179.4
Q ss_pred hHHHHHHHHHHh--CCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 14 ALHYMFRNQAKR--TPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 14 ~l~~~l~~~~~~--~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
++.++|.+.+++ +|+++|+++ ++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~--~~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~ 82 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYA--ADVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMA 82 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEe--cCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 688889888876 799999974 3479999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSG 171 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 171 (251)
+|++|..+.+++.++++.++++++|+++...+.+.... .... ... ... .............++++++++||||
T Consensus 83 vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~-~~~---~~~-~~~~~~~~~~~~~~~~~a~il~TSG 155 (705)
T PRK06060 83 FLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSR--VAEA-AEL---MSE-AARVAPGGYEPMGGDALAYATYTSG 155 (705)
T ss_pred EecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccc--cchh-hhh---hhh-ccccCCCCCCCCCCCCeEEEEECCC
Confidence 99999999999999999999999999877655443211 0000 000 000 0000001122345688999999999
Q ss_pred CCCCCceEEeccHHHHHHHHHHH-HhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550 172 TTGKPKGIVCPHRGAVHAYKWRH-RAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV 244 (251)
Q Consensus 172 tTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~ 244 (251)
|||.||||+++|+++...+.... ..+++.++|++++..++ ...++.++..|+++++.+. .+++..+++.++
T Consensus 156 STG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~~i~ 233 (705)
T PRK06060 156 TTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSA--PVTPEAAAILSA 233 (705)
T ss_pred CCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCC--CCCHHHHHHHHH
Confidence 99999999999999988776553 46788888888765433 2346788999999999885 378999999999
Q ss_pred ccccC
Q psy4550 245 RLPLN 249 (251)
Q Consensus 245 ~~~vt 249 (251)
++++|
T Consensus 234 ~~~~t 238 (705)
T PRK06060 234 RFGPS 238 (705)
T ss_pred hcCCe
Confidence 99987
No 63
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=100.00 E-value=1.2e-32 Score=243.21 Aligned_cols=242 Identities=20% Similarity=0.239 Sum_probs=179.6
Q ss_pred CCCCCCCcCchhhhHHHHHHHHHHhCCCceEEEecC------C--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 1 MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHD------G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 1 m~~~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~------~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
|++......+...++.+++.++++++|+++|+++.+ + +.+||+||.+++.++|++|.+. +++||+|+++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~ 100 (612)
T PRK12476 22 LDADGNIALPPGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAP 100 (612)
T ss_pred ccccccccCCccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECC
Confidence 344444455566789999999999999999997521 2 4799999999999999999987 899999999999
Q ss_pred CCHHHHHHHHHHHHHCCeEeeC-CCCCC--HHHHHHHHhhcCccEEEEccchhhhhhcc----C---CCeeeecchhhhh
Q psy4550 73 RCLEWTISYIAIHKAGGGYLPL-ETSYP--PALLESVLDDAKPSIVITKGEYMDRLERT----S---VPKVKLENDFLSK 142 (251)
Q Consensus 73 ~~~~~~~~~~a~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~---~~~~~~~~~~~~~ 142 (251)
|+++++++++||+++|++++|+ ++..+ .+++.+++++++++++|++++..+.+... . ...+.......
T Consensus 101 n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 178 (612)
T PRK12476 101 QGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIP-- 178 (612)
T ss_pred CChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEecccc--
Confidence 9999999999999999999999 56665 78999999999999999987765543221 0 11111111110
Q ss_pred hhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC-CCCCChhhhhHHHHH-----HHH
Q psy4550 143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP-YDEDDREACNVFFVW-----EML 216 (251)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~ 216 (251)
.. ...........++++++|+|||||||.||||+++|+++..++......++ +.+++++++++|++| .++
T Consensus 179 --~~--~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~ 254 (612)
T PRK12476 179 --DS--AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIG 254 (612)
T ss_pred --cc--ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHH
Confidence 00 00011122345689999999999999999999999999988777777777 788888888776543 234
Q ss_pred HhhhcCccEEEecC-ccccCchHHHhhhh--ccccC
Q psy4550 217 RPLTQGIPMYVISD-EVIYDPPRLTSGWV--RLPLN 249 (251)
Q Consensus 217 ~~l~~G~~~v~~~~-~~~~~~~~~~~~i~--~~~vt 249 (251)
.+++.|++.++..+ ...++|..|++.++ ++++|
T Consensus 255 ~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t 290 (612)
T PRK12476 255 FPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGR 290 (612)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCe
Confidence 44455655555543 22248999999995 46554
No 64
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=7e-32 Score=233.96 Aligned_cols=233 Identities=25% Similarity=0.327 Sum_probs=190.4
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
...++.++|.+.++.+|+++|+.+ .++.+||+||++++.++|+.|.+.|+++|++|+++++|+.+++++++||+++|++
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~ 82 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYF-DGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV 82 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEe-CCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 456899999999999999999985 5667999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCeee-ecc-----------hhhhhhhhhhhcccCC
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKVK-LEN-----------DFLSKMISENEKLHNV 153 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~-~~~-----------~~~~~~~~~~~~~~~~ 153 (251)
++|+++..+.+++.++++.+++++++++.+..+.+.+.. ...+. ... .+.+.... .....
T Consensus 83 ~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 159 (521)
T PRK06187 83 LHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAA---ASDTF 159 (521)
T ss_pred EEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhc---CCccC
Confidence 999999999999999999999999999988766544321 11111 111 11111111 11112
Q ss_pred CCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEe
Q psy4550 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVI 228 (251)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~ 228 (251)
......++++++++|||||||.||+|.+||+++..........+++.++|++++..+.+ ...+.++..|++++++
T Consensus 160 ~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~ 239 (521)
T PRK06187 160 DFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIP 239 (521)
T ss_pred CCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEec
Confidence 23345668899999999999999999999999999888888889999999987655432 2345589999999998
Q ss_pred cCccccCchHHHhhhhccccCC
Q psy4550 229 SDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+. +++..+++.++++++|.
T Consensus 240 ~~---~~~~~~~~~l~~~~~t~ 258 (521)
T PRK06187 240 RR---FDPENLLDLIETERVTF 258 (521)
T ss_pred CC---CCHHHHHHHHHHhCCeE
Confidence 87 69999999999999873
No 65
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=4.9e-32 Score=240.13 Aligned_cols=234 Identities=25% Similarity=0.312 Sum_probs=180.6
Q ss_pred cCchhhhHHHHHHHHHHhCCCceEEEecC--------CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH
Q psy4550 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHD--------GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79 (251)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~~--------~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~ 79 (251)
..+...++.++|.+.++.+|+++|+++.+ .+.+||+||.++++++|++|.+. +++||+|+++++|++++++
T Consensus 16 ~~~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~ 94 (631)
T PRK07769 16 RFPPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLI 94 (631)
T ss_pred cccccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHH
Confidence 34455689999999999999999997521 25799999999999999999987 8999999999999999999
Q ss_pred HHHHHHHHCCeEeeC-CCCCC--HHHHHHHHhhcCccEEEEccchhhhhhcc----C---CCeeeecchhhhhhhhhhhc
Q psy4550 80 SYIAIHKAGGGYLPL-ETSYP--PALLESVLDDAKPSIVITKGEYMDRLERT----S---VPKVKLENDFLSKMISENEK 149 (251)
Q Consensus 80 ~~~a~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~ 149 (251)
+++||+++|++++|+ ++..+ .+++.++++.++++++|++++..+.+... . ...+...+..... ..
T Consensus 95 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 169 (631)
T PRK07769 95 AFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPDE---VG-- 169 (631)
T ss_pred HHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccccc---cc--
Confidence 999999999999999 45443 68899999999999999988765443221 0 0111111110000 00
Q ss_pred ccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCcc
Q psy4550 150 LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIP 224 (251)
Q Consensus 150 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~ 224 (251)
.........++++++|+|||||||.||||++||+++..++......+++..++++++++|++| .++.+++.|++
T Consensus 170 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~ 248 (631)
T PRK07769 170 -ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHY 248 (631)
T ss_pred -cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCe
Confidence 001122346789999999999999999999999999998888888889999999887665532 34667788999
Q ss_pred EEEecC-ccccCchHHHhhhhcccc
Q psy4550 225 MYVISD-EVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 225 ~v~~~~-~~~~~~~~~~~~i~~~~v 248 (251)
+++.++ ....+|..+++.++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~i~~~~~ 273 (631)
T PRK07769 249 ITFMSPAAFVRRPGRWIRELARKPG 273 (631)
T ss_pred EEEEChHHHHhCHHHHHHHHHhhcc
Confidence 988864 112389999999998875
No 66
>PRK08315 AMP-binding domain protein; Validated
Probab=100.00 E-value=1.2e-31 Score=234.60 Aligned_cols=237 Identities=23% Similarity=0.306 Sum_probs=186.0
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
...++.++|.+.++++|+++|+.+. +++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 14 ~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~ 93 (559)
T PRK08315 14 LEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGA 93 (559)
T ss_pred hhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCe
Confidence 4458999999999999999999764 456799999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh-----hhhccC------------------C-Ceeeecc------hh
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMD-----RLERTS------------------V-PKVKLEN------DF 139 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~------------------~-~~~~~~~------~~ 139 (251)
+++|++|..+.+++..+++.++++++++++.... .+.+.. . ..+.... ..
T Consensus 94 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (559)
T PRK08315 94 ILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLN 173 (559)
T ss_pred EEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCCccccc
Confidence 9999999999999999999999999999875421 111000 0 0111110 00
Q ss_pred hhhhhhhh----hcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH----
Q psy4550 140 LSKMISEN----EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF---- 211 (251)
Q Consensus 140 ~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 211 (251)
+....... ............++++++++|||||||.||+|.+||+++..++......+++.++|+++...++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 253 (559)
T PRK08315 174 FDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCF 253 (559)
T ss_pred HHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHH
Confidence 01111000 0000011223456789999999999999999999999999999988888999999988765433
Q ss_pred --HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 212 --VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 212 --~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
...++.++..|+++++... .++|..+++.++++++|
T Consensus 254 g~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~~l~~~~~t 291 (559)
T PRK08315 254 GMVLGNLACVTHGATMVYPGE--GFDPLATLAAVEEERCT 291 (559)
T ss_pred HHHHHHHHHHhccceEEEecC--CCCHHHHHHHHHHcCCe
Confidence 2356889999999996554 38999999999999987
No 67
>PTZ00297 pantothenate kinase; Provisional
Probab=100.00 E-value=1.1e-31 Score=249.00 Aligned_cols=236 Identities=15% Similarity=0.129 Sum_probs=182.4
Q ss_pred CCcCchhhhHHHHHHHHHHhCCCceEEEec--CC--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHH
Q psy4550 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDH--DG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81 (251)
Q Consensus 6 ~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~--~~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~ 81 (251)
++..+...++.++|.+.++++|+++|+... .+ +.+||+|+.+++.++|.+|.++|+++||+|+++++|+++|+++.
T Consensus 420 ~~~~~~~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~ 499 (1452)
T PTZ00297 420 YNPLAGVRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE 499 (1452)
T ss_pred CCCcccCCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 455666779999999999999999999632 23 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC---CCeeeecchh------------------h
Q psy4550 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS---VPKVKLENDF------------------L 140 (251)
Q Consensus 82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~------------------~ 140 (251)
+||+.+|++.+|+++ +.+++.+++++++++++|++.+..+++.... .+.++..+.. +
T Consensus 500 lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~ 577 (1452)
T PTZ00297 500 VACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPY 577 (1452)
T ss_pred HHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeH
Confidence 999999999999975 4678999999999999999987766654321 2222221100 1
Q ss_pred hhhhhhhhcccCCCCCCCCCCCeEEEEe---ccCCCCCCceEEeccHHHHHHHHHHHHhC---CCCCCChhhhhHHHHH-
Q psy4550 141 SKMISENEKLHNVDFPQVGLDDIAYIVY---SSGTTGKPKGIVCPHRGAVHAYKWRHRAY---PYDEDDREACNVFFVW- 213 (251)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~- 213 (251)
..+................++|++.|+| ||||||.||||++||+|+++++....... ...++|++++.+|++|
T Consensus 578 ~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI 657 (1452)
T PTZ00297 578 EFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAML 657 (1452)
T ss_pred HHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHH
Confidence 1111111100111122346788999986 99999999999999999999988876532 3567899888777654
Q ss_pred ----HHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 214 ----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 214 ----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
..+.++..|+++.+ +++..+++.|+++++|
T Consensus 658 ~er~~~~~~l~~G~~I~~------~d~~~lledL~~~rPT 691 (1452)
T PTZ00297 658 FNRVFVLGLFAHGSAVAT------VDAAHLQRAFVKFQPT 691 (1452)
T ss_pred HHHHHHHHHHHcCCEEEe------CCHHHHHHHHHHHCCE
Confidence 24667889988752 6789999999999998
No 68
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=100.00 E-value=1.6e-31 Score=230.99 Aligned_cols=229 Identities=23% Similarity=0.322 Sum_probs=187.8
Q ss_pred hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~ 93 (251)
++.+.|.+.++.+|+++|+. ..++.+||.||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+++|++++|
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~-~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYR-YQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIP 79 (502)
T ss_pred CHHHHHHHHHHHCCCceEEE-cCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeC
Confidence 46788999999999999997 57789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCC
Q psy4550 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTT 173 (251)
Q Consensus 94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 173 (251)
+++.++.+++.++++..+++.++++++....... ...+.+. .......... .........+++.++++||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~il~TSGTT 153 (502)
T TIGR01734 80 VDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--TQIITLS--ALEQAETSGG--PVSFDHAVKGDDNYYIIYTSGST 153 (502)
T ss_pred CCCcChHHHHHHHHHhcCCCEEEecccccccccC--CceEEch--HhhhhhhhcC--CccccccCCCCCeEEEEECCCCC
Confidence 9999999999999999999999998776443321 1112111 1111111110 11112334678899999999999
Q ss_pred CCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 174 GKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 174 G~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
|.||+|.++|+++...+......++...++++++.+|+ ...++.++..|+++++.++....++..+++.++++++
T Consensus 154 G~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~ 233 (502)
T TIGR01734 154 GNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGL 233 (502)
T ss_pred CCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCC
Confidence 99999999999999999888888899889988776544 3457789999999999987555789999999999988
Q ss_pred C
Q psy4550 249 N 249 (251)
Q Consensus 249 t 249 (251)
|
T Consensus 234 ~ 234 (502)
T TIGR01734 234 N 234 (502)
T ss_pred e
Confidence 6
No 69
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=5.3e-32 Score=275.89 Aligned_cols=233 Identities=27% Similarity=0.481 Sum_probs=194.3
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
+...++.++|.++++++|+++|+.+ +++.+||+||.++++++|+.|+++|+++|++|+++++++++++++++|++++|+
T Consensus 1128 ~~~~~l~~~~~~~a~~~p~~~Al~~-~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~ 1206 (4334)
T PRK05691 1128 PAQAWLPELLNEQARQTPERIALVW-DGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGG 1206 (4334)
T ss_pred CccCCHHHHHHHHHHhCCCCeEEEE-CCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 3456899999999999999999985 667899999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-CCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEe
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-VPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVY 168 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 168 (251)
+++|++|..+.+++.+++++++++++++++...+.+.... ...+...... .... ..........++++++++|
T Consensus 1207 ~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~a~ii~ 1280 (4334)
T PRK05691 1207 AYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSLH---LDSW---PSQAPGLHLHGDNLAYVIY 1280 (4334)
T ss_pred EEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeecccc---cccc---CCCCCCCCCCCCCeEEEEE
Confidence 9999999999999999999999999999987655443221 1111111100 0000 0011222346789999999
Q ss_pred ccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhh
Q psy4550 169 SSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGW 243 (251)
Q Consensus 169 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i 243 (251)
||||||.||||+++|+++.+.+......+++.++|++++..++ .+.++.++..|+++++.+....+++..+++.|
T Consensus 1281 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i 1360 (4334)
T PRK05691 1281 TSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAELV 1360 (4334)
T ss_pred cCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHH
Confidence 9999999999999999999999998999999999999875543 35689999999999999866678999999999
Q ss_pred hccccC
Q psy4550 244 VRLPLN 249 (251)
Q Consensus 244 ~~~~vt 249 (251)
++++||
T Consensus 1361 ~~~~vt 1366 (4334)
T PRK05691 1361 QQYGVT 1366 (4334)
T ss_pred HHcCCe
Confidence 999997
No 70
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.4e-31 Score=237.17 Aligned_cols=235 Identities=19% Similarity=0.255 Sum_probs=177.0
Q ss_pred HHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 15 LHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 15 l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
..++|.++++.+|+++|+++. +.+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 55 ~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 134 (629)
T PRK10524 55 CHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA 134 (629)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 477788888889999999852 235799999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchh---------hhhhc-------cCCCeeeecchh------------hh
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYM---------DRLER-------TSVPKVKLENDF------------LS 141 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~-------~~~~~~~~~~~~------------~~ 141 (251)
+++|++|..+.+++.+++++++++++|+++... +.+.+ .....+...... ..
T Consensus 135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 214 (629)
T PRK10524 135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYA 214 (629)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHH
Confidence 999999999999999999999999999976421 11110 011111111100 00
Q ss_pred hhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHH-HHHHHHhCCCCCCChhhhhHHH------HHH
Q psy4550 142 KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHA-YKWRHRAYPYDEDDREACNVFF------VWE 214 (251)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~ 214 (251)
...... ...........++++++++|||||||.||||+++|.++... .......+++.++|++++..+. .+.
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 293 (629)
T PRK10524 215 TLRAQH-LGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYI 293 (629)
T ss_pred HHHhcC-CCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHH
Confidence 000000 00011112245689999999999999999999999997644 3444556788888988765432 356
Q ss_pred HHHhhhcCccEEEecC-ccccCchHHHhhhhccccCC
Q psy4550 215 MLRPLTQGIPMYVISD-EVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 215 ~~~~l~~G~~~v~~~~-~~~~~~~~~~~~i~~~~vt~ 250 (251)
++.++..|+++++... ....++..+++.|+++++|.
T Consensus 294 ~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~ 330 (629)
T PRK10524 294 VYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNR 330 (629)
T ss_pred HHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceE
Confidence 7889999999998774 22467899999999999973
No 71
>PRK07514 malonyl-CoA synthase; Validated
Probab=100.00 E-value=2.2e-31 Score=230.19 Aligned_cols=228 Identities=24% Similarity=0.331 Sum_probs=183.6
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.++.+++.+.+ .+|+++++.+.+++.+||.||.+++.++|..|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v 81 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFL 81 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEE
Confidence 47889999999 99999999866788999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCC-eeeecchhhhhh-hhhhhcccCCCCCCCCCCCeEEE
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVP-KVKLENDFLSKM-ISENEKLHNVDFPQVGLDDIAYI 166 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i 166 (251)
|+++..+.+++..+++.++++++++++...+.+... ... .+.........+ ................+++++++
T Consensus 82 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 161 (504)
T PRK07514 82 PLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAAPDDFETVPRGADDLAAI 161 (504)
T ss_pred ECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhcCcccCcccCCCCCeEEE
Confidence 999999999999999999999999998766544322 111 111111100000 00011111122334567899999
Q ss_pred EeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEecCccccCchHHH
Q psy4550 167 VYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVISDEVIYDPPRLT 240 (251)
Q Consensus 167 ~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~~ 240 (251)
+|||||||.||+|.++|+++...+......+++.++|++++..+++ ..++.++..|+++++.+. +++..++
T Consensus 162 ~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~ 238 (504)
T PRK07514 162 LYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPK---FDPDAVL 238 (504)
T ss_pred EECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCC---CCHHHHH
Confidence 9999999999999999999999998888888999999988755432 235678999999999987 8899999
Q ss_pred hhhh
Q psy4550 241 SGWV 244 (251)
Q Consensus 241 ~~i~ 244 (251)
+.+.
T Consensus 239 ~~i~ 242 (504)
T PRK07514 239 ALMP 242 (504)
T ss_pred HHHH
Confidence 8884
No 72
>PRK06188 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.7e-31 Score=231.96 Aligned_cols=234 Identities=22% Similarity=0.205 Sum_probs=186.5
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
..++.++|.+.++++|+++|+++ +++.+||.||.+++.+++..|.+.|+++|++|+++++|++++++.++||+++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~ 89 (524)
T PRK06188 11 GATYGHLLVSALKRYPDRPALVL-GDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89 (524)
T ss_pred CccHHHHHHHHHHHCCCCeEEEE-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence 44899999999999999999986 66789999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccc-hhhhhhcc--CC---Ceee-ecc--hhhhhhhhhhhcccCCCCCCCCCCC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGE-YMDRLERT--SV---PKVK-LEN--DFLSKMISENEKLHNVDFPQVGLDD 162 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~--~~---~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (251)
+|++|..+.+++.++++.++++.+++++. ..+..... .. ..+. ... ......................+++
T Consensus 90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (524)
T PRK06188 90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPD 169 (524)
T ss_pred EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhccCcccccccCCCCC
Confidence 99999999999999999999999999876 32222111 01 1111 110 0000000000000011112234566
Q ss_pred eEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH----HHHHhhhcCccEEEecCccccCchH
Q psy4550 163 IAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW----EMLRPLTQGIPMYVISDEVIYDPPR 238 (251)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~G~~~v~~~~~~~~~~~~ 238 (251)
+++++|||||||.||+|.++|.++...+......+++..++++++.+++.+ .++.++..|+++++.+. ++|..
T Consensus 170 ~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~l~~G~~~~~~~~---~~~~~ 246 (524)
T PRK06188 170 IAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLAK---FDPAE 246 (524)
T ss_pred eEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHHHHHHHHcCCEEEEcCC---CCHHH
Confidence 999999999999999999999999999998889999999999987664432 35778899999999987 89999
Q ss_pred HHhhhhccccC
Q psy4550 239 LTSGWVRLPLN 249 (251)
Q Consensus 239 ~~~~i~~~~vt 249 (251)
+++.++++++|
T Consensus 247 ~~~~i~~~~~t 257 (524)
T PRK06188 247 VLRAIEEQRIT 257 (524)
T ss_pred HHHHHHHhCCE
Confidence 99999999987
No 73
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=100.00 E-value=1.1e-31 Score=238.31 Aligned_cols=225 Identities=17% Similarity=0.184 Sum_probs=166.8
Q ss_pred hCCCceEEEecC--C--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCH
Q psy4550 25 RTPDKIAVVDHD--G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100 (251)
Q Consensus 25 ~~~~~~a~~~~~--~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~ 100 (251)
..++++|++..+ + +.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|++++|+++.++.
T Consensus 96 ~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~ 175 (652)
T TIGR01217 96 AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGA 175 (652)
T ss_pred cCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCH
Confidence 357888887522 2 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccEEEEccchh---------hhhhc----cC-CC-eeeecc--------------hhhhhhhhhhhccc
Q psy4550 101 ALLESVLDDAKPSIVITKGEYM---------DRLER----TS-VP-KVKLEN--------------DFLSKMISENEKLH 151 (251)
Q Consensus 101 ~~l~~~l~~~~~~~vi~~~~~~---------~~~~~----~~-~~-~~~~~~--------------~~~~~~~~~~~~~~ 151 (251)
+++.+++++++++++|+++... +.+.. .. .. .+.... ..+....... ...
T Consensus 176 ~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 254 (652)
T TIGR01217 176 RGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAA-QAA 254 (652)
T ss_pred HHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcc-cCC
Confidence 9999999999999999987532 11111 00 11 111110 0001110000 000
Q ss_pred CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHH-HHHHHHHhCCCCCCChhhhhHHHHH----HHHHhhhcCccEE
Q psy4550 152 NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH-AYKWRHRAYPYDEDDREACNVFFVW----EMLRPLTQGIPMY 226 (251)
Q Consensus 152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~G~~~v 226 (251)
.........+++++|+|||||||.||||+++|.+++. ........+++.++|++++..++.+ .++.++..|++++
T Consensus 255 ~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~G~t~v 334 (652)
T TIGR01217 255 ELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWNWLVSGLATGATLV 334 (652)
T ss_pred CCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhhHHHHHHHhcCcEEE
Confidence 1112234568999999999999999999999999654 4455556678899999876543321 3567899999999
Q ss_pred EecCc-cccCchHHHhhhhccccCC
Q psy4550 227 VISDE-VIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 227 ~~~~~-~~~~~~~~~~~i~~~~vt~ 250 (251)
+.+.. ...++..+++.+++++||.
T Consensus 335 l~~g~~~~~~~~~~~~~i~~~~vt~ 359 (652)
T TIGR01217 335 LYDGSPGFPATNVLWDIAERTGATL 359 (652)
T ss_pred EECCCCCCCCchHHHHHHHHhCCeE
Confidence 98632 1237899999999999973
No 74
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.3e-31 Score=233.59 Aligned_cols=234 Identities=21% Similarity=0.226 Sum_probs=185.9
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.-+++.+.+...++.+|+++|+. .+++.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~-~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~ 93 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALR-FLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAI 93 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEE-eCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 34689999999999999999998 46778999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCeee-ecc-------hhhhhhhhhhhcccCCCCCC
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKVK-LEN-------DFLSKMISENEKLHNVDFPQ 157 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~ 157 (251)
++|+++..+.+++.++++.++++++++++...+...... ...+. ..+ .+.+.... .........
T Consensus 94 ~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 170 (542)
T PRK07786 94 AVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAE---AGPAHAPVD 170 (542)
T ss_pred EEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhc---cCCCCCCCC
Confidence 999999999999999999999999999887655432211 11111 111 01111111 111112233
Q ss_pred CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCC-CCCChhhhhHHH-----HHHHHHhhhcCccEEEecCc
Q psy4550 158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPY-DEDDREACNVFF-----VWEMLRPLTQGIPMYVISDE 231 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~ 231 (251)
...+++++++|||||||.||+|.++|+++...+......+++ ..++++++..|+ ...++.++..|+++++.+..
T Consensus 171 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 250 (542)
T PRK07786 171 IPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLG 250 (542)
T ss_pred CCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCC
Confidence 455789999999999999999999999999888877777776 566776654443 23578889999999987632
Q ss_pred cccCchHHHhhhhccccC
Q psy4550 232 VIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~vt 249 (251)
.++|..+++.|+++++|
T Consensus 251 -~~~~~~~~~~i~~~~~t 267 (542)
T PRK07786 251 -AFDPGQLLDVLEAEKVT 267 (542)
T ss_pred -CcCHHHHHHHHHHcCCe
Confidence 37999999999999987
No 75
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.3e-31 Score=238.24 Aligned_cols=224 Identities=19% Similarity=0.212 Sum_probs=169.0
Q ss_pred hCCCceEEEecC----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCH
Q psy4550 25 RTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100 (251)
Q Consensus 25 ~~~~~~a~~~~~----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~ 100 (251)
.+|+++|++..+ .+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|++++|++|.++.
T Consensus 96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~ 175 (655)
T PRK03584 96 RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGV 175 (655)
T ss_pred CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCH
Confidence 579999998532 2579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccEEEEccchhh---------hhhc----c-CCC-eeeecch-------------hhhhhhhhhhcccC
Q psy4550 101 ALLESVLDDAKPSIVITKGEYMD---------RLER----T-SVP-KVKLEND-------------FLSKMISENEKLHN 152 (251)
Q Consensus 101 ~~l~~~l~~~~~~~vi~~~~~~~---------~~~~----~-~~~-~~~~~~~-------------~~~~~~~~~~~~~~ 152 (251)
+++.++++.++++++|+++.... .+.+ . ... .+..... .+...... .....
T Consensus 176 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 254 (655)
T PRK03584 176 QGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAP-AEAAE 254 (655)
T ss_pred HHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHhhc-cccCC
Confidence 99999999999999999875321 1110 0 011 1111100 00011000 00111
Q ss_pred CCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHH-HHHHHHHhCCCCCCChhhhhHHH----HHHHHHhhhcCccEEE
Q psy4550 153 VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH-AYKWRHRAYPYDEDDREACNVFF----VWEMLRPLTQGIPMYV 227 (251)
Q Consensus 153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~G~~~v~ 227 (251)
........+++++|+|||||||.||||+++|++++. ........+++.++|++++..+. ...++.++..|+++++
T Consensus 255 ~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~L~~G~t~vl 334 (655)
T PRK03584 255 LEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWNWLVSGLLVGATLVL 334 (655)
T ss_pred CCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHHHHHHHHHcCCEEEE
Confidence 122345668999999999999999999999998764 45556667888999998764422 1235678999999999
Q ss_pred ecCc-cccCchHHHhhhhccccC
Q psy4550 228 ISDE-VIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 228 ~~~~-~~~~~~~~~~~i~~~~vt 249 (251)
.+.. ..+++..+++.|++++||
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~vt 357 (655)
T PRK03584 335 YDGSPFYPDPNVLWDLAAEEGVT 357 (655)
T ss_pred eCCCCCCCCHHHHHHHHHHHCCE
Confidence 8642 236899999999999987
No 76
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=100.00 E-value=2.5e-31 Score=231.65 Aligned_cols=237 Identities=18% Similarity=0.265 Sum_probs=186.6
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH 85 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~ 85 (251)
...++.+.|.+.++.+|+++|++.. .++.+||+||.+++.++|.+|+++|+++|++|+++++|+++++++++||+
T Consensus 20 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~ 99 (538)
T TIGR03208 20 RDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACA 99 (538)
T ss_pred ccCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 3458999999999999999999742 24689999999999999999999999999999999999999999999999
Q ss_pred HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh-----hhhc----c-CC-Ceeeecc----hhhhhhhhhh-hc
Q psy4550 86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD-----RLER----T-SV-PKVKLEN----DFLSKMISEN-EK 149 (251)
Q Consensus 86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~----~-~~-~~~~~~~----~~~~~~~~~~-~~ 149 (251)
++|++++|++|..+.+++.++++.++++++++++.... .... . .. ..+.... .+........ ..
T Consensus 100 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (538)
T TIGR03208 100 RIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDD 179 (538)
T ss_pred hcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCCcCHHHHhhcccccc
Confidence 99999999999999999999999999999999876421 1110 0 00 1111111 1111111000 00
Q ss_pred ccC----CCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhh
Q psy4550 150 LHN----VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPL 219 (251)
Q Consensus 150 ~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l 219 (251)
... .......++++++++|||||||.||||+++|+++...+......+++..+|++++.+++. .+++.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l 259 (538)
T TIGR03208 180 TPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPL 259 (538)
T ss_pred ccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHH
Confidence 000 111235678999999999999999999999999999988888888898899888755432 3467889
Q ss_pred hcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 220 TQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 220 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
..|+++++.+. +++..+++.++++++|.
T Consensus 260 ~~g~~~~~~~~---~~~~~~~~~l~~~~vt~ 287 (538)
T TIGR03208 260 ILNATAVLQDI---WNPARAAELIRETGVTF 287 (538)
T ss_pred HcCCEEEecCc---cCHHHHHHHHHHhCCeE
Confidence 99999999876 89999999999999873
No 77
>PRK12583 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=4e-31 Score=231.27 Aligned_cols=235 Identities=23% Similarity=0.299 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
.++.++|.+.++++|+++|++.. .++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~ 97 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAIL 97 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEE
Confidence 47999999999999999999753 45789999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhh-----hhhcc---------------CCC---eee-ecc-------hhh
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMD-----RLERT---------------SVP---KVK-LEN-------DFL 140 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~---------------~~~---~~~-~~~-------~~~ 140 (251)
+++++..+.+++.++++.++++++++++.... .+... ..+ .+. ... .+.
T Consensus 98 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (558)
T PRK12583 98 VNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWH 177 (558)
T ss_pred EecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCccccchH
Confidence 99999999999999999999999999764321 11000 000 000 000 000
Q ss_pred hhhhhhhh---cccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------
Q psy4550 141 SKMISENE---KLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------ 211 (251)
Q Consensus 141 ~~~~~~~~---~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------ 211 (251)
........ ...........++++++++|||||||.||+|.++|+++..++......+++..+|++++..++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 257 (558)
T PRK12583 178 ELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGM 257 (558)
T ss_pred hhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhH
Confidence 00000000 000011123456789999999999999999999999999998888888899999988775543
Q ss_pred HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 212 VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 212 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
...++.++..|++++++.. .+++..+++.++++++|
T Consensus 258 ~~~~~~~l~~g~~v~~~~~--~~~~~~~~~~i~~~~~t 293 (558)
T PRK12583 258 VLANLGCMTVGACLVYPNE--AFDPLATLQAVEEERCT 293 (558)
T ss_pred HHHHHHHHhcCceEEeecC--CCCHHHHHHHHHHcCCe
Confidence 2346778999999987664 38999999999999987
No 78
>PRK07798 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.9e-31 Score=230.01 Aligned_cols=234 Identities=21% Similarity=0.271 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~ 93 (251)
++.++|.+.++++|+++|+.+ +++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~-~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~ 82 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVC-GDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVN 82 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEe
Confidence 789999999999999999985 7788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC-----C-eeeecchhhh-------hhhhhhhcccCCCCCCCCC
Q psy4550 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV-----P-KVKLENDFLS-------KMISENEKLHNVDFPQVGL 160 (251)
Q Consensus 94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 160 (251)
+++..+.+++.++++.++++++++++...+.+.+... . .+........ ...................
T Consensus 83 l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (533)
T PRK07798 83 VNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGERS 162 (533)
T ss_pred cCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCCCCCCC
Confidence 9999999999999999999999999876555443211 1 1111111100 0000000000011111223
Q ss_pred CCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC---------CC------CCCChhhhhHHH-----HHHHHHhhh
Q psy4550 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY---------PY------DEDDREACNVFF-----VWEMLRPLT 220 (251)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---------~~------~~~~~~~~~~~~-----~~~~~~~l~ 220 (251)
.+.++++|||||||.||+|+++|+++..........+ ++ ..+++++..+++ .+.++.++.
T Consensus 163 ~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~ 242 (533)
T PRK07798 163 PDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALF 242 (533)
T ss_pred CCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHh
Confidence 3456899999999999999999999986554322211 11 455666654433 335788999
Q ss_pred cCccEEEecCccccCchHHHhhhhccccC
Q psy4550 221 QGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 221 ~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.|+++++.+.. .+++..+++.++++++|
T Consensus 243 ~G~~~~~~~~~-~~~~~~~~~~i~~~~~t 270 (533)
T PRK07798 243 SGQTVVLLPDV-RFDADEVWRTIEREKVN 270 (533)
T ss_pred cCceEEEecCC-CcCHHHHHHHHHHhCCe
Confidence 99999999932 48999999999999987
No 79
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=3.7e-31 Score=232.18 Aligned_cols=233 Identities=20% Similarity=0.265 Sum_probs=178.8
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.++.+++.+.++++|+++|+.+ +++.+||.||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++++
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~-~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v 110 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDF-FGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVV 110 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEe-CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEe
Confidence 4899999999999999999985 677899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc-------------------------------
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN------------------------------- 137 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~------------------------------- 137 (251)
|++|..+.+++.+++++++++++|+++.......+. ....+...+
T Consensus 111 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (573)
T PRK05605 111 EHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPA 190 (573)
T ss_pred ecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccccccccccccccccccCC
Confidence 999999999999999999999999987654433211 111111000
Q ss_pred ----hhhhhhhhhhhcc-cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC-C-CCCChhhhhHH
Q psy4550 138 ----DFLSKMISENEKL-HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP-Y-DEDDREACNVF 210 (251)
Q Consensus 138 ----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~ 210 (251)
.+........... .........++++++++|||||||.||+|.+||+++...+......+. + ..++++++..|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p 270 (573)
T PRK05605 191 PGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALP 270 (573)
T ss_pred CcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecC
Confidence 0000000000000 001122345689999999999999999999999999887765444332 2 34567766544
Q ss_pred HH------HHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 211 FV------WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 211 ~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
++ ..++.++..|+++++.+. +++..+++.|+++++|
T Consensus 271 ~~~~~g~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~l~~~~~t 312 (573)
T PRK05605 271 MFHAYGLTLCLTLAVSIGGELVLLPA---PDIDLILDAMKKHPPT 312 (573)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCC---CCHHHHHHHHHHhCCE
Confidence 32 235667899999999887 8999999999999987
No 80
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=100.00 E-value=2.5e-31 Score=249.63 Aligned_cols=238 Identities=22% Similarity=0.280 Sum_probs=190.7
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
+...++.+.+.+.++++|+++|+++.+++++||+|+.++++++|+.|++. +++||+|+++++|+++++++++||+++|+
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~-~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 690 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGALANLALLLAGK 690 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHHh-CCCCCeEEEECCCchHHHHHHHHHHHcCC
Confidence 44568999999999999999999876678999999999999999999874 89999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-------CCeeeecchhhh------hhhhhhhc--cc---
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-------VPKVKLENDFLS------KMISENEK--LH--- 151 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~--~~--- 151 (251)
+++|++|..+.+++.++++++++++++++++..+.+.+.. ...+...++... ........ .+
T Consensus 691 v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1146)
T PRK08633 691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARL 770 (1146)
T ss_pred EEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccCCHHH
Confidence 9999999999999999999999999999987766654210 111111111000 00000000 00
Q ss_pred --CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCc
Q psy4550 152 --NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGI 223 (251)
Q Consensus 152 --~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~ 223 (251)
........++++++++|||||||.||||.+||+++..++......+++.++|++++.+|++| .++.++..|+
T Consensus 771 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~ 850 (1146)
T PRK08633 771 LKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGI 850 (1146)
T ss_pred HHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCC
Confidence 00013456789999999999999999999999999999988888899999999987665533 3578899999
Q ss_pred cEEEecCccccCchHHHhhhhccccCC
Q psy4550 224 PMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
++++.++ .+++..+++.++++++|.
T Consensus 851 ~~v~~~~--~~~~~~~~~~i~~~~~t~ 875 (1146)
T PRK08633 851 KVVYHPD--PTDALGIAKLVAKHRATI 875 (1146)
T ss_pred EEEEeCC--CCCHHHHHHHHHHcCCeE
Confidence 9999875 489999999999999973
No 81
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=100.00 E-value=3.5e-31 Score=230.57 Aligned_cols=229 Identities=20% Similarity=0.232 Sum_probs=183.0
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
+.++.++|.+.++ |+++|+++ +++.+||+|+.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~ 100 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVIC-GERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP 100 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEe-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence 4578999988886 99999986 67789999999999999999999999999999999999999999999999999988
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccch--------hhhhhcc--CCCeeeecc-----hhhhhhhhhhhcccCCCCC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEY--------MDRLERT--SVPKVKLEN-----DFLSKMISENEKLHNVDFP 156 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~--------~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 156 (251)
+++.+.....++..+++.++++.++++++. .+.+... ....+.... .+..... ... ......
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~ 177 (536)
T PRK10946 101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAIN-HPA--EDFTAT 177 (536)
T ss_pred ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHHhh-Ccc--cccccC
Confidence 887777788899999999999999997642 1112111 111111111 1111111 111 111123
Q ss_pred CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-------HHHHhhhcCccEEEec
Q psy4550 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-------EMLRPLTQGIPMYVIS 229 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~G~~~v~~~ 229 (251)
...++++++++|||||||.||||++||+++...+......+++.++|++++.+|+.| +++.++..|+++++.+
T Consensus 178 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~ 257 (536)
T PRK10946 178 PSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP 257 (536)
T ss_pred CCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC
Confidence 456789999999999999999999999999999998888899999999988765432 5688899999999988
Q ss_pred CccccCchHHHhhhhccccC
Q psy4550 230 DEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 230 ~~~~~~~~~~~~~i~~~~vt 249 (251)
. +++..+++.++++++|
T Consensus 258 ~---~~~~~~~~~l~~~~~t 274 (536)
T PRK10946 258 D---PSATLCFPLIEKHQVN 274 (536)
T ss_pred C---CCHHHHHHHHHHhCCc
Confidence 7 8999999999999987
No 82
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=100.00 E-value=2.4e-31 Score=249.52 Aligned_cols=237 Identities=20% Similarity=0.238 Sum_probs=184.1
Q ss_pred chhhhHHHHHHHHHHhCC-CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 10 DAEGALHYMFRNQAKRTP-DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~-~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
+...++.+.+.+.++++| ++.++.+.+++++||+|+.++++++|+.|++ |+++||+|+++++|+++++++++||+++|
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G 706 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAG 706 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCC
Confidence 345677888888888886 5677765467889999999999999999975 99999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhh------cc--CCCeeeecchh-----hhhhhhh-hhcccCCC
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE------RT--SVPKVKLENDF-----LSKMISE-NEKLHNVD 154 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~------~~--~~~~~~~~~~~-----~~~~~~~-~~~~~~~~ 154 (251)
++++|++|..+.+++.++++++++++++++++..+... +. ....+..++.. ....... ....+...
T Consensus 707 ~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1140)
T PRK06814 707 RVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLVY 786 (1140)
T ss_pred CEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhccCCccc
Confidence 99999999999999999999999999999876544321 00 11122221100 0000000 00001111
Q ss_pred CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEe
Q psy4550 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVI 228 (251)
Q Consensus 155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~ 228 (251)
.....++++++++|||||||.||||++||+++..++......+++.++|++++.+|++ .+++.++..|+++++.
T Consensus 787 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~ 866 (1140)
T PRK06814 787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLY 866 (1140)
T ss_pred cCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEe
Confidence 1235678999999999999999999999999999998888889999999998766543 3467789999999998
Q ss_pred cCccccCchHHHhhhhccccC
Q psy4550 229 SDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~vt 249 (251)
++ .+++..+.+.++++++|
T Consensus 867 ~~--~~~~~~~~~~i~~~~~t 885 (1140)
T PRK06814 867 PS--PLHYRIIPELIYDTNAT 885 (1140)
T ss_pred cC--cccHHHHHHHHHhcCCE
Confidence 75 36778888999999987
No 83
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.98 E-value=7.3e-31 Score=230.42 Aligned_cols=234 Identities=18% Similarity=0.229 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHHhCCCceEEEecC--CCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHD--GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~--~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
.++.++|.+.++.+|+++|+.+.+ ++.+||+||.+++.++|.+|.+ .|+++||+|+++++|+++++++++||+++|+
T Consensus 10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~ 89 (576)
T PRK05620 10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGA 89 (576)
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCC
Confidence 489999999999999999987522 4689999999999999999987 7999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCee-eecchh----------------hhhhhhhh
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKV-KLENDF----------------LSKMISEN 147 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~-~~~~~~----------------~~~~~~~~ 147 (251)
+++|++|..+.+++.++++.++++++|++++..+.+.+. ....+ ...... +..+...
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 168 (576)
T PRK05620 90 VFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDG- 168 (576)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhc-
Confidence 999999999999999999999999999998765544321 11111 111000 0011100
Q ss_pred hcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHH--HHhCCCCCCChhhhhHHHHH-----HHHHhhh
Q psy4550 148 EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR--HRAYPYDEDDREACNVFFVW-----EMLRPLT 220 (251)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~l~ 220 (251)
...........++++++++|||||||.||||+++|+++....... ...+++..++++++.+|++| .++.++.
T Consensus 169 -~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~ 247 (576)
T PRK05620 169 -RSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFM 247 (576)
T ss_pred -CCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHh
Confidence 011112234567899999999999999999999999986554432 34577888999887665543 3477889
Q ss_pred cCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 221 QGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 221 ~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
.|+++++.+. .+++..+++.|+++++|.
T Consensus 248 ~g~~~~~~~~--~~~~~~~~~~i~~~~~t~ 275 (576)
T PRK05620 248 SGTPLVFPGP--DLSAPTLAKIIATAMPRV 275 (576)
T ss_pred cCceEEecCC--CCCHHHHHHHHHHhcCce
Confidence 9999998875 379999999999998873
No 84
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=99.98 E-value=1.1e-30 Score=225.82 Aligned_cols=231 Identities=23% Similarity=0.323 Sum_probs=187.9
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
+++.++|.+.++.+|+++++.+ +++.+||+||.+.+.++|.+|.+.|+++|++|+++++|+.++++.++||+++|++++
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~-~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~ 80 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDY-LGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYI 80 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEe-CCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEe
Confidence 4688999999999999999974 677899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCC
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGT 172 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 172 (251)
|+++..+.+++.++++..++++++++++..... .....+.. .+...... ............+++.++++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~TSGT 154 (503)
T PRK04813 81 PVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--LGIPVITL-DELKDIFA---TGNPYDFDHAVKGDDNYYIIFTSGT 154 (503)
T ss_pred cCCCCChHHHHHHHHHhcCCCEEEecccccccc--cCCcEEeh-HHhhhhhh---ccccccccccCCCCCcEEEEECCCC
Confidence 999999999999999999999999987652111 11111111 11111100 0111112234566889999999999
Q ss_pred CCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhccc
Q psy4550 173 TGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLP 247 (251)
Q Consensus 173 TG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~ 247 (251)
||.||+|.++|+++..........+++..+++++...++ ...++.++..|+++++.+....+++..+++.+++++
T Consensus 155 TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 234 (503)
T PRK04813 155 TGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLP 234 (503)
T ss_pred CCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcC
Confidence 999999999999999998888888899899988876544 334678899999999998755679999999999998
Q ss_pred cCC
Q psy4550 248 LNG 250 (251)
Q Consensus 248 vt~ 250 (251)
+|.
T Consensus 235 ~t~ 237 (503)
T PRK04813 235 INV 237 (503)
T ss_pred CeE
Confidence 863
No 85
>PRK13383 acyl-CoA synthetase; Provisional
Probab=99.98 E-value=5.8e-31 Score=228.25 Aligned_cols=227 Identities=16% Similarity=0.222 Sum_probs=178.1
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
..++.+.|.+.++.+|+++|+.+ +++.+||+|+.+++.++|++|++.|+++||+|+++++|+++++.+++||+.+|+++
T Consensus 34 ~~~~~~~~~~~a~~~p~~~a~~~-~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 34 GTNPYTLLAVTAARWPGRTAIID-DDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred CCcHHHHHHHHHHHCCCCcEEEe-CCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 35788889999999999999986 56689999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSG 171 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 171 (251)
+|+++..+.+++.++++.++++.++++++..+.+................ ... ....+...++.++++||||
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~p~~~~~~~~il~TSG 184 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAG-----AEE---SGGRPAVAAPGRIVLLTSG 184 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccchhh-----hhc---CCCCCCCCCCCcEEEECCC
Confidence 99999999999999999999999999987766554332222222111100 000 0011123456679999999
Q ss_pred CCCCCceEEeccHHHHH--HHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550 172 TTGKPKGIVCPHRGAVH--AYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV 244 (251)
Q Consensus 172 tTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~ 244 (251)
|||.||+|+++|..... ........+++..+|+++..+|+ ...++.++..|+++++... +++..+++.++
T Consensus 185 TTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~ 261 (516)
T PRK13383 185 TTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRH---FDAEAALAQAS 261 (516)
T ss_pred CCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCC---CCHHHHHHHHH
Confidence 99999999999984322 22223345678888888765543 2335678899999998876 89999999999
Q ss_pred ccccCC
Q psy4550 245 RLPLNG 250 (251)
Q Consensus 245 ~~~vt~ 250 (251)
++++|.
T Consensus 262 ~~~~t~ 267 (516)
T PRK13383 262 LHRADA 267 (516)
T ss_pred HhCCcE
Confidence 999873
No 86
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.98 E-value=6.2e-31 Score=229.15 Aligned_cols=233 Identities=16% Similarity=0.197 Sum_probs=180.2
Q ss_pred hhHHHHHHHHHHhCCCceEEEec-C--CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDH-D--GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~-~--~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
.++.++|.+.++++|++.++.+. + .+.+||.||.++++++|++|.+.|+++||+|+++++|++++++.++||+++|+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~ 89 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA 89 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 47899999999999999888642 2 36799999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCe-eeecch---------h--hhhhhhhhhcccC
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPK-VKLEND---------F--LSKMISENEKLHN 152 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~-~~~~~~---------~--~~~~~~~~~~~~~ 152 (251)
+++|++|..+.+++.++++.++++++++++++.+.+.... ... +..... . ...+.... ...
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~ 167 (539)
T PRK07008 90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQ--DGD 167 (539)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhccc--CCC
Confidence 9999999999999999999999999999987654433210 000 000000 0 00000000 011
Q ss_pred CCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHH--HHHHhCCCCCCChhhhhHHHHHH-----HHHhhhcCccE
Q psy4550 153 VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK--WRHRAYPYDEDDREACNVFFVWE-----MLRPLTQGIPM 225 (251)
Q Consensus 153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~G~~~ 225 (251)
.......++++++++|||||||.||+|++||+++..... .....+++.++|++++..|+++. ++.++..|+++
T Consensus 168 ~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~ 247 (539)
T PRK07008 168 YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKL 247 (539)
T ss_pred cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceE
Confidence 122345668899999999999999999999999875432 33346778888998876655432 36678899999
Q ss_pred EEecCccccCchHHHhhhhccccC
Q psy4550 226 YVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 226 v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
++.++ .+++..+++.++++++|
T Consensus 248 ~~~~~--~~~~~~~~~~l~~~~vt 269 (539)
T PRK07008 248 VLPGP--DLDGKSLYELIEAERVT 269 (539)
T ss_pred EEecC--CcCHHHHHHHHHHcCCE
Confidence 99865 38999999999999997
No 87
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=99.98 E-value=2e-31 Score=231.51 Aligned_cols=227 Identities=14% Similarity=0.168 Sum_probs=173.2
Q ss_pred HHHHHHHHHHhCCCceEEEecCC---CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 15 LHYMFRNQAKRTPDKIAVVDHDG---RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 15 l~~~l~~~~~~~~~~~a~~~~~~---~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
+.+.|.+.++++|+++|+++.++ +.+||+||.++++++|..|.++ ++||+|+++++|+++++++++||+++|+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~ 81 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV 81 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence 78899999999999999986542 6799999999999999999998 799999999999999999999999999986
Q ss_pred eeCCCC-------CCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeE
Q psy4550 92 LPLETS-------YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIA 164 (251)
Q Consensus 92 v~i~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (251)
++.+.. ...+++.++++.++++++|+++...+.+...... +... +... ..............+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~-~~~~----~~~~~~~~~~~~~~~~d~a 155 (525)
T PRK05851 82 SILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-VTVH-DLAT----AAHTNRSASLTPPDSGGPA 155 (525)
T ss_pred cCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-cccc-cccc----cccccccccCCCCCCCCeE
Confidence 543211 1235566778999999999987765444322111 1110 0000 0000000111234678999
Q ss_pred EEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCC-CCChhhhhHHHHH-----HHHHhhhcCccEEEecCc-cccCch
Q psy4550 165 YIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD-EDDREACNVFFVW-----EMLRPLTQGIPMYVISDE-VIYDPP 237 (251)
Q Consensus 165 ~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~-~~~~~~ 237 (251)
+|+|||||||.||||+++|+++...+......+++. .+|++++++|++| .++.++..|+++++.+.. ...+|.
T Consensus 156 ~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~ 235 (525)
T PRK05851 156 VLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPF 235 (525)
T ss_pred EEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHH
Confidence 999999999999999999999999998888888988 8999988776533 467899999999997731 112688
Q ss_pred HHHhhhhccccC
Q psy4550 238 RLTSGWVRLPLN 249 (251)
Q Consensus 238 ~~~~~i~~~~vt 249 (251)
.+++.++++++|
T Consensus 236 ~~~~~i~~~~~t 247 (525)
T PRK05851 236 RWLSWLSDSRAT 247 (525)
T ss_pred HHHHHHHHhCCe
Confidence 999999999887
No 88
>PRK09192 acyl-CoA synthetase; Validated
Probab=99.98 E-value=3.2e-31 Score=232.74 Aligned_cols=238 Identities=21% Similarity=0.258 Sum_probs=183.4
Q ss_pred CcCchhhhHHHHHHHHHHhCCCceEEEecCC---CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHH
Q psy4550 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHDG---RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (251)
Q Consensus 7 ~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~---~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a 83 (251)
...+...++.++|...++++|+..++ +.++ +.+||+||++++.++|.+|+++|+++||+|+++++|+++++++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA 93 (579)
T PRK09192 15 RRYADFPTLVEALDYAALGEAGMNFY-DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFA 93 (579)
T ss_pred ccccchhhHHHHHHHhhccCCceEEE-ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHH
Confidence 34567789999999999998876655 5443 5699999999999999999999999999999999999999999999
Q ss_pred HHHHCCeEeeCCCCCC-------HHHHHHHHhhcCccEEEEccchhhhhhccC--CCeeeecchhhhhhhhhhhcccCCC
Q psy4550 84 IHKAGGGYLPLETSYP-------PALLESVLDDAKPSIVITKGEYMDRLERTS--VPKVKLENDFLSKMISENEKLHNVD 154 (251)
Q Consensus 84 ~~~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
|+++|++++|+++..+ .+++.++++.++++++++++...+.+.... ...... ..+..... ... ....
T Consensus 94 ~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~--~~~~ 169 (579)
T PRK09192 94 CQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHV-LSHAWFKA-LPE--ADVA 169 (579)
T ss_pred HHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccce-eehhhhcc-cCC--Cccc
Confidence 9999999999986432 689999999999999999987665544321 111110 01111110 000 0112
Q ss_pred CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH-hCCCCCCChhhhhHHHHH------HHHHhhhcCccEEE
Q psy4550 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR-AYPYDEDDREACNVFFVW------EMLRPLTQGIPMYV 227 (251)
Q Consensus 155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~ 227 (251)
.....++++++++|||||||.||||.++|+++...+..... .+++.++|++++++|++| .++.++..|+++++
T Consensus 170 ~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~ 249 (579)
T PRK09192 170 LPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDY 249 (579)
T ss_pred cCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEe
Confidence 23356689999999999999999999999999998887777 788999999887665432 35667889999877
Q ss_pred ecC-ccccCchHHHhhhhccccC
Q psy4550 228 ISD-EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 228 ~~~-~~~~~~~~~~~~i~~~~vt 249 (251)
.+. ....+|..+++.++++++|
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~t 272 (579)
T PRK09192 250 LPTRDFARRPLQWLDLISRNRGT 272 (579)
T ss_pred eCHHHHHHCHHHHHHHHHhcCcE
Confidence 763 2223799999999999886
No 89
>PRK05850 acyl-CoA synthetase; Validated
Probab=99.98 E-value=2.9e-31 Score=233.06 Aligned_cols=229 Identities=25% Similarity=0.364 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHhCCCceEEEecC--------CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHD--------GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH 85 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~--------~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~ 85 (251)
++.++|.+++..+|+++|+++.+ .+.+||+||.+++.++|++|.+.| .+||+|+++++|+++++++++||+
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 57889999999999999998532 268999999999999999999999 689999999999999999999999
Q ss_pred HHCCeEeeCCC---CCCHHHHHHHHhhcCccEEEEccchhhhhhcc-------CCCeeeecchhhhhhhhhhhcccCCCC
Q psy4550 86 KAGGGYLPLET---SYPPALLESVLDDAKPSIVITKGEYMDRLERT-------SVPKVKLENDFLSKMISENEKLHNVDF 155 (251)
Q Consensus 86 ~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (251)
++|++++|+++ ..+.+++.++++++++++++++++..+.+... ....+... +... . ... .....
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~-~~~~~ 154 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEV-DLLD-L---DSP-RGSDA 154 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEee-cccc-c---ccC-Ccccc
Confidence 99999999997 45789999999999999999998766554321 01111110 0000 0 000 00112
Q ss_pred CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC-C-----CCCCChhhhhHHH------HHHHHHhhhcCc
Q psy4550 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY-P-----YDEDDREACNVFF------VWEMLRPLTQGI 223 (251)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~-----~~~~~~~~~~~~~------~~~~~~~l~~G~ 223 (251)
....++++++++|||||||.||||+++|+++++++......+ . ...++++++++|+ ..+++.+++.|+
T Consensus 155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 234 (578)
T PRK05850 155 RPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGC 234 (578)
T ss_pred CCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCC
Confidence 234568999999999999999999999999998876655432 2 3456777765543 345788999999
Q ss_pred cEEEecCc-cccCchHHHhhhhccccC
Q psy4550 224 PMYVISDE-VIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 224 ~~v~~~~~-~~~~~~~~~~~i~~~~vt 249 (251)
++++.++. ...+|..|++.+++++++
T Consensus 235 ~~~~~~~~~~~~~p~~~~~~i~~~~~~ 261 (578)
T PRK05850 235 PAVLTSPVAFLQRPARWMQLLASNPHA 261 (578)
T ss_pred cEEEeCHHHHHHCHHHHHHHHHHcCCe
Confidence 99998751 123799999999999876
No 90
>PLN02479 acetate-CoA ligase
Probab=99.98 E-value=1.7e-30 Score=227.64 Aligned_cols=238 Identities=16% Similarity=0.142 Sum_probs=178.4
Q ss_pred CCcCchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH 85 (251)
Q Consensus 6 ~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~ 85 (251)
.+..+...++++.+...++.+|+++|+++ ++..+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++++||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~p~~~a~~~-~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~ 91 (567)
T PLN02479 13 NAANYTALTPLWFLERAAVVHPTRKSVVH-GSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVP 91 (567)
T ss_pred ccccccccCHHHHHHHHHhhCCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence 33444445789999999999999999985 66789999999999999999999999999999999999999999999999
Q ss_pred HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc------------CCCee-eecc---------------
Q psy4550 86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT------------SVPKV-KLEN--------------- 137 (251)
Q Consensus 86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------------~~~~~-~~~~--------------- 137 (251)
++|++++|+++..+.+++.++++.+++++++++++..+...+. ..+.+ ....
T Consensus 92 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (567)
T PLN02479 92 MAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKG 171 (567)
T ss_pred hCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccC
Confidence 9999999999999999999999999999999988765432211 00111 1110
Q ss_pred --hhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHHH-
Q psy4550 138 --DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWE- 214 (251)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 214 (251)
.+.+.+...... .........++.++++|||||||.||||++||+++..........+++..+++++..+++++.
T Consensus 172 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~ 249 (567)
T PLN02479 172 AIEYEKFLETGDPE--FAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCN 249 (567)
T ss_pred cccHHHHHhccccc--cccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhh
Confidence 000000000000 000112233466789999999999999999999988777666677888888888765554331
Q ss_pred -----HHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 215 -----MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 215 -----~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+...+..|.++ +... +++..+++.++++++|.
T Consensus 250 ~~~~~~~~~~~~g~~~-~~~~---~~~~~~~~~l~~~~~t~ 286 (567)
T PLN02479 250 GWCFTWTLAALCGTNI-CLRQ---VTAKAIYSAIANYGVTH 286 (567)
T ss_pred hHHHHHHHHhhcCceE-eccC---CCHHHHHHHHHHcCCeE
Confidence 22345555554 4455 89999999999999873
No 91
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.98 E-value=4.9e-30 Score=224.61 Aligned_cols=234 Identities=18% Similarity=0.262 Sum_probs=177.4
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
..++.++|.+.++.+|+++|+++ +++.+||+||.+++.++|+.|.+ .|+++||+|+++++|+++++++++||+++|++
T Consensus 23 ~~~~~~~l~~~a~~~p~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~ 101 (562)
T PRK05677 23 YPNIQAVLKQSCQRFADKPAFSN-LGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLI 101 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEEE-CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 35899999999999999999985 66789999999999999999997 59999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--h--------------------------
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--D-------------------------- 138 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~-------------------------- 138 (251)
++|++|..+.+++.++++.++++++|++++..+.+.+. ....+...+ +
T Consensus 102 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (562)
T PRK05677 102 VVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL 181 (562)
T ss_pred EeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCC
Confidence 99999999999999999999999999987654433221 111111110 0
Q ss_pred -----hhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC--CCCC-ChhhhhHH
Q psy4550 139 -----FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP--YDED-DREACNVF 210 (251)
Q Consensus 139 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~-~~~~~~~~ 210 (251)
+.+.... ............++++++++|||||||.||||+++|+++..++......++ +..+ +++++.++
T Consensus 182 ~~~~~~~~~~~~--~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p 259 (562)
T PRK05677 182 PQAVKFNDALAK--GAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLP 259 (562)
T ss_pred cccccHHHHHhc--CCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCc
Confidence 0000000 000001122345689999999999999999999999999887765555443 3332 45454443
Q ss_pred HH------HHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 211 FV------WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 211 ~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
++ ..++..+..|++.++.+. .+++..+++.|+++++|.
T Consensus 260 l~h~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~~~~t~ 303 (562)
T PRK05677 260 LYHIYAFTFHCMAMMLIGNHNILISN--PRDLPAMVKELGKWKFSG 303 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEecC--cccHHHHHHHHHHcCceE
Confidence 32 345677888888777765 378999999999999874
No 92
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=99.98 E-value=8.1e-31 Score=228.60 Aligned_cols=235 Identities=18% Similarity=0.192 Sum_probs=180.8
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEe-cCC--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVD-HDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~-~~~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~ 87 (251)
...++.++|.+.++++|+++++.. .++ +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+.+
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~ 87 (542)
T PRK06018 8 WPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGI 87 (542)
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhc
Confidence 345899999999999999999973 123 67999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeee-ecch-------------hhhhhhhhhh
Q psy4550 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVK-LEND-------------FLSKMISENE 148 (251)
Q Consensus 88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~-~~~~-------------~~~~~~~~~~ 148 (251)
|++++|++|..+.+++.++++.++++.++++.+..+.+.+. ....+. .... +......
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 164 (542)
T PRK06018 88 GAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAE--- 164 (542)
T ss_pred CeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhcc---
Confidence 99999999999999999999999999999998765544321 111111 1100 0000000
Q ss_pred cccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHH-H-HHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhc
Q psy4550 149 KLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV-H-AYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQ 221 (251)
Q Consensus 149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~ 221 (251)
...........++++++++|||||||.||+|.+||++.+ . ........+++..+|+++...++++ ..+.++..
T Consensus 165 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~ 244 (542)
T PRK06018 165 ADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSM 244 (542)
T ss_pred CCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhc
Confidence 000111233466789999999999999999999999743 2 2233445677888898877655433 24567889
Q ss_pred CccEEEecCccccCchHHHhhhhccccCC
Q psy4550 222 GIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 222 G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
|+++++... .+++..+++.++++++|.
T Consensus 245 g~~~v~~~~--~~~~~~~~~~l~~~~~t~ 271 (542)
T PRK06018 245 GTKLVMPGA--KLDGASVYELLDTEKVTF 271 (542)
T ss_pred CceEEccCc--CCCHHHHHHHHHhcCCce
Confidence 999988764 489999999999999873
No 93
>PRK07470 acyl-CoA synthetase; Validated
Probab=99.97 E-value=2.2e-30 Score=225.20 Aligned_cols=233 Identities=20% Similarity=0.281 Sum_probs=177.8
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.++.++|.+.++++|+++|+.+ +++.+||+||.+++.++|..|++.|+++|++|+++++|+++++++++||+++|++++
T Consensus 7 ~~~~~~~~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v 85 (528)
T PRK07470 7 MNLAHFLRQAARRFPDRIALVW-GDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWV 85 (528)
T ss_pred CCHHHHHHHHHHHCCCceEEEE-CCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEE
Confidence 4788999999999999999985 677899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CC-Ceeeecc-----hhhhhhhhhhhcccCCCCCCCCCC
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SV-PKVKLEN-----DFLSKMISENEKLHNVDFPQVGLD 161 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 161 (251)
|+++..+.+++.++++.++++.++++++..+..... .. ..+.... .+...... .. ..........++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 163 (528)
T PRK07470 86 PTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVAR-HL-GARVANAAVDHD 163 (528)
T ss_pred ecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhc-CC-CCCCCcccCCCC
Confidence 999999999999999999999999998765443221 01 1111111 11111111 00 011122345678
Q ss_pred CeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH-hC-CCCCCChhhhhHHHHHH----HHHhhhcCccEEEecCccccC
Q psy4550 162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR-AY-PYDEDDREACNVFFVWE----MLRPLTQGIPMYVISDEVIYD 235 (251)
Q Consensus 162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~----~~~~l~~G~~~v~~~~~~~~~ 235 (251)
++++++|||||||.||+|.++|+++...+..... .+ +....|+++..+++.|. .+..+..|++.++.+. ..++
T Consensus 164 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 242 (528)
T PRK07470 164 DPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLCQVARGAATVLLPS-ERFD 242 (528)
T ss_pred CeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHHHHhcCceEEEecc-cCcC
Confidence 9999999999999999999999999765543222 22 56677777765554332 2345677777776653 1479
Q ss_pred chHHHhhhhccccC
Q psy4550 236 PPRLTSGWVRLPLN 249 (251)
Q Consensus 236 ~~~~~~~i~~~~vt 249 (251)
+..+++.|+++++|
T Consensus 243 ~~~~~~~i~~~~~t 256 (528)
T PRK07470 243 PAEVWALVERHRVT 256 (528)
T ss_pred HHHHHHHHHhcCCe
Confidence 99999999999987
No 94
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=99.97 E-value=3.9e-30 Score=222.67 Aligned_cols=230 Identities=19% Similarity=0.267 Sum_probs=180.3
Q ss_pred HHHHHHHH-HHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550 15 LHYMFRNQ-AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (251)
Q Consensus 15 l~~~l~~~-~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~ 93 (251)
..+++.+. ++.+|+++|+++ +++.+||.|+.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 6 ~~~~~~~~~~~~~p~~~a~~~-~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~ 84 (508)
T TIGR02262 6 AEDLLDRNVVEGRGGKTAFID-DISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVA 84 (508)
T ss_pred HHHHHHHHHhcccCCceEEEe-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEee
Confidence 44555565 577999999985 6778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCee-eecc------hhhhhhhhhhhcccCCCCCCCCCC
Q psy4550 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKV-KLEN------DFLSKMISENEKLHNVDFPQVGLD 161 (251)
Q Consensus 94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 161 (251)
+++..+.+++.++++.++++++++++...+.+.+.. ...+ .... .+.+... ............++
T Consensus 85 l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 161 (508)
T TIGR02262 85 LNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLA---TESEQFKPAATQAD 161 (508)
T ss_pred ccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhh---cCCCccCCCCCCCC
Confidence 999999999999999999999999887655443210 1111 1111 0111110 11111122344568
Q ss_pred CeEEEEeccCCCCCCceEEeccHHHHHHHHH-HHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCcccc
Q psy4550 162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW-RHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEVIY 234 (251)
Q Consensus 162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~~ 234 (251)
++++++|||||||.||+|.++|+++...+.. ....++++++|+++..+++++ .++.++..|+++++.++ .+
T Consensus 162 ~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~--~~ 239 (508)
T TIGR02262 162 DPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGE--RP 239 (508)
T ss_pred CcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCC--CC
Confidence 9999999999999999999999999887765 456778899998877654432 35678889999999886 37
Q ss_pred CchHHHhhhhccccCC
Q psy4550 235 DPPRLTSGWVRLPLNG 250 (251)
Q Consensus 235 ~~~~~~~~i~~~~vt~ 250 (251)
++..+++.|+++++|.
T Consensus 240 ~~~~~~~~i~~~~~t~ 255 (508)
T TIGR02262 240 TPDAVFDRLRRHQPTI 255 (508)
T ss_pred CHHHHHHHHHHHCCcE
Confidence 8999999999999873
No 95
>KOG1256|consensus
Probab=99.97 E-value=9.2e-31 Score=222.44 Aligned_cols=237 Identities=22% Similarity=0.212 Sum_probs=182.2
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecC-------CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHH
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHD-------GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~-------~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~ 81 (251)
.+...|+++.|.+.+..+++.+++-.-. .+.+||+|..+++.+++..|+.+|+++++.|+|+..|++||+++.
T Consensus 71 ~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~ 150 (691)
T KOG1256|consen 71 FDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISE 150 (691)
T ss_pred CCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhH
Confidence 3467899999999999999999986411 246899999999999999999999999999999999999999999
Q ss_pred HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc-cchhhhhhccC-------CCeeeecch---------------
Q psy4550 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK-GEYMDRLERTS-------VPKVKLEND--------------- 138 (251)
Q Consensus 82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~-------~~~~~~~~~--------------- 138 (251)
.||...|.++||++.+.+++.+.++++.+.+++||++ ++..+.+.+.. ...++.-..
T Consensus 151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~ 230 (691)
T KOG1256|consen 151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVE 230 (691)
T ss_pred HHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeE
Confidence 9999999999999999999999999999999999999 44444443321 111111110
Q ss_pred --hhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHH---HHHhC---CCCCCChhhhhHH
Q psy4550 139 --FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW---RHRAY---PYDEDDREACNVF 210 (251)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~---~~~~~---~~~~~~~~~~~~~ 210 (251)
.++...............+..++|.+.|.|||||||.|||||+||+|+.+.+.. ..... ....+|++++.+|
T Consensus 231 v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLP 310 (691)
T KOG1256|consen 231 VYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLP 310 (691)
T ss_pred EEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCc
Confidence 112222222211111225778999999999999999999999999999986542 22211 2234688888877
Q ss_pred HHHH-----HHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 211 FVWE-----MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 211 ~~~~-----~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
+.|. -...+..|+++.+... |+..+.+.+++.++|
T Consensus 311 LAHi~er~~~~~~~~~G~~IgF~~g----D~~~l~~dlk~lkPT 350 (691)
T KOG1256|consen 311 LAHIFERVVELYTFYIGAKIGFARG----DILKLTDDLKELKPT 350 (691)
T ss_pred HHHHHHHHHHHhHhhcccEEEEecC----ChHHHHHHHHHhCCc
Confidence 7542 2445588999999885 888888889998887
No 96
>PRK08162 acyl-CoA synthetase; Validated
Probab=99.97 E-value=5.7e-30 Score=223.42 Aligned_cols=231 Identities=19% Similarity=0.168 Sum_probs=177.5
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.+..+.|.+.++.+|+++|+.+ ++..+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~-~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v 96 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIH-GDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLN 96 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEE-CCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEe
Confidence 4778899999999999999985 677899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCC-eeeecch--------------hhhhhhhhhhcccCC
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVP-KVKLEND--------------FLSKMISENEKLHNV 153 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~--------------~~~~~~~~~~~~~~~ 153 (251)
|+++..+.+++.++++.++++.++++++..+.+.+. ... .+.+... +...... . .....
T Consensus 97 pl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 174 (545)
T PRK08162 97 TLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLAS-G-DPDFA 174 (545)
T ss_pred ccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhcc-C-Ccccc
Confidence 999999999999999999999999998876654331 111 1111110 0000000 0 00001
Q ss_pred CCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHHH-----HHHhhhcCccEEEe
Q psy4550 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWE-----MLRPLTQGIPMYVI 228 (251)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~G~~~v~~ 228 (251)
.......++.++++|||||||.||||+++|+++...+......+++..++++++.+++++. .+...+.|++.++.
T Consensus 175 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~ 254 (545)
T PRK08162 175 WTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCL 254 (545)
T ss_pred ccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEe
Confidence 1112234578999999999999999999999987776666667778888888766554321 22233456566666
Q ss_pred cCccccCchHHHhhhhccccC
Q psy4550 229 SDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~vt 249 (251)
.. +++..+++.++++++|
T Consensus 255 ~~---~~~~~~~~~l~~~~~t 272 (545)
T PRK08162 255 RK---VDPKLIFDLIREHGVT 272 (545)
T ss_pred CC---CCHHHHHHHHHHcCCe
Confidence 65 8999999999999997
No 97
>PRK09088 acyl-CoA synthetase; Validated
Probab=99.97 E-value=4.1e-30 Score=221.48 Aligned_cols=217 Identities=22% Similarity=0.360 Sum_probs=171.9
Q ss_pred HHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCC
Q psy4550 21 NQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99 (251)
Q Consensus 21 ~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~ 99 (251)
.+++.+|+++|+.+. +++.+||+|+.+++.++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+
T Consensus 3 ~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~ 82 (488)
T PRK09088 3 FHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLS 82 (488)
T ss_pred hhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCC
Confidence 456789999999863 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceE
Q psy4550 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179 (251)
Q Consensus 100 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v 179 (251)
.+++.++++.++++++++++...... ...+.. +.+.... ... .........++++++++|||||||.||+|
T Consensus 83 ~~~~~~~~~~~~~~~ii~~~~~~~~~----~~~~~~-~~~~~~~---~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v 153 (488)
T PRK09088 83 ASELDALLQDAEPRLLLGDDAVAAGR----TDVEDL-AAFIASA---DAL-EPADTPSIPPERVSLILFTSGTSGQPKGV 153 (488)
T ss_pred HHHHHHHHHhCCCCEEEEcchhhccc----ccccch-hhhhhhc---ccc-ccccCCCCCCCCceEEEeCCCCCCCCcEE
Confidence 99999999999999999987654311 001100 0111000 000 01112234567899999999999999999
Q ss_pred EeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCccccCchHHHhhhhc--cccC
Q psy4550 180 VCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVR--LPLN 249 (251)
Q Consensus 180 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~--~~vt 249 (251)
.++|+++...+...........+|++++.+|+++ .++.++..|+++++.+. +++..++..+.+ +++|
T Consensus 154 ~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~~~~~~~~~t 228 (488)
T PRK09088 154 MLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG---FEPKRTLGRLGDPALGIT 228 (488)
T ss_pred EEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC---CCHHHHHHHHHhhccCCc
Confidence 9999999988877777777888898887665433 35667889999998876 888999888864 5555
No 98
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=8.8e-30 Score=222.80 Aligned_cols=235 Identities=20% Similarity=0.328 Sum_probs=175.0
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
+.++.++|.+.++++|+++|+++ .+..+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~-~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 100 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFIC-MGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVV 100 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEE-cCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEE
Confidence 35899999999999999999985 66789999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--hh--------------------------
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--DF-------------------------- 139 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~~-------------------------- 139 (251)
+|++|..+.+++.++++.++++++++++...+.+... ....+.... ..
T Consensus 101 v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (557)
T PRK07059 101 VNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPG 180 (557)
T ss_pred eccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccCCCC
Confidence 9999999999999999999999999987764433221 111110000 00
Q ss_pred ---hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC----CC---CCChhhhhH
Q psy4550 140 ---LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP----YD---EDDREACNV 209 (251)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~---~~~~~~~~~ 209 (251)
....... ............++++++|+|||||||.||+|+++|.+++.++........ .. ....+++.+
T Consensus 181 ~~~~~~~~~~-~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (557)
T PRK07059 181 HVRFNDALAE-GARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259 (557)
T ss_pred cccHHHHhhc-cCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeC
Confidence 0000000 000111223456789999999999999999999999999876654332221 11 122333333
Q ss_pred HH------HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 210 FF------VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 210 ~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
++ ....+.++..|++.++.+. ..++..+++.++++++|.
T Consensus 260 pl~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~~~vt~ 304 (557)
T PRK07059 260 PLYHIFALTVCGLLGMRTGGRNILIPN--PRDIPGFIKELKKYQVHI 304 (557)
T ss_pred CcHHHHHHHHHHHHHHhhcceEEEecC--CcCHHHHHHHHHHhCCee
Confidence 22 2245667788888777775 368999999999999874
No 99
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=1.5e-29 Score=221.67 Aligned_cols=234 Identities=24% Similarity=0.330 Sum_probs=175.4
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
+++.++|.+.++.+|+++|+++ +++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~-~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 102 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHF-LGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVV 102 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEe-cCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEe
Confidence 5899999999999999999985 678899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--hhh--------------------------
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--DFL-------------------------- 140 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~~~-------------------------- 140 (251)
|++|..+.+++.++++.++++.+++++......... ....+.... ...
T Consensus 103 pi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (563)
T PRK06710 103 QTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESE 182 (563)
T ss_pred ccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccccccccc
Confidence 999999999999999999999999987654332211 001110000 000
Q ss_pred --hhhhhh-hhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH-hCCCCCC-ChhhhhHHHHH--
Q psy4550 141 --SKMISE-NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR-AYPYDED-DREACNVFFVW-- 213 (251)
Q Consensus 141 --~~~~~~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~-- 213 (251)
...... .............+++.++++|||||||.||+|.++|+++..+...... .++...+ +++++++|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 262 (563)
T PRK06710 183 TIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVY 262 (563)
T ss_pred hhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHH
Confidence 000000 0000000111123578999999999999999999999999865443332 2344443 45566554322
Q ss_pred ----HHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 214 ----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 214 ----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
.++.++..|+++++.+. +++..+++.|+++++|.
T Consensus 263 g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~ 300 (563)
T PRK06710 263 GMTAVMNLSIMQGYKMVLIPK---FDMKMVFEAIKKHKVTL 300 (563)
T ss_pred HHHHHHHHHHHcCCeEEEcCC---CCHHHHHHHHHHcCCeE
Confidence 24567889999999886 89999999999999873
No 100
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.1e-30 Score=206.88 Aligned_cols=235 Identities=19% Similarity=0.232 Sum_probs=194.4
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
.+++.++|.++++++|+++|++| +++.+||+||.+++.++|..|+++|+++||+|.+.++|..+|+++++|++++|..+
T Consensus 27 d~~l~d~L~~~A~~~pdriAv~d-~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~P 105 (542)
T COG1021 27 DRTLTDILTDHAARYPDRIAVID-GERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAP 105 (542)
T ss_pred CCcHHHHHHHHHhhcCCceEEec-CcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcch
Confidence 46899999999999999999996 55669999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hhhc-cCCCeeeecchh----hhhhhhhhhcccCCCCCC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RLER-TSVPKVKLENDF----LSKMISENEKLHNVDFPQ 157 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 157 (251)
|.--|.....++.++.+.++++..|.++.... .+.+ ...+.+.+..+- ......-.......+..+
T Consensus 106 VlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~a~~~~~a~~ 185 (542)
T COG1021 106 VLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFTPAPP 185 (542)
T ss_pred hhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCccccCCcCCC
Confidence 99989999999999999999999998765321 1111 122333322211 011111111122244566
Q ss_pred CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-------HHHHhhhcCccEEEecC
Q psy4550 158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-------EMLRPLTQGIPMYVISD 230 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~G~~~v~~~~ 230 (251)
.+++++++...+-||||.||.+..||.....+++.-.+..+++...+++|.+|..| +.+..++.|+++|+.++
T Consensus 186 ~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~ 265 (542)
T COG1021 186 ADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPD 265 (542)
T ss_pred CCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCC
Confidence 77889999999999999999999999999999998899999999999999876543 68999999999999998
Q ss_pred ccccCchHHHhhhhccccCC
Q psy4550 231 EVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 231 ~~~~~~~~~~~~i~~~~vt~ 250 (251)
-+|+....+|++|+||.
T Consensus 266 ---psp~~~F~lIerh~Vt~ 282 (542)
T COG1021 266 ---PSPELCFPLIERHGVTV 282 (542)
T ss_pred ---CCHHHHHHHHHHhccce
Confidence 89999999999999984
No 101
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=99.97 E-value=2.2e-29 Score=219.51 Aligned_cols=234 Identities=20% Similarity=0.268 Sum_probs=173.9
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.+.++.++|.+.++.+|+++|+.+ +++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~-~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 97 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEF-RDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGAR 97 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEE-CCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeE
Confidence 355899999999999999999974 6778999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchh--hhhhc----cCCCe-eeecchhhhh----------------hhhh-
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYM--DRLER----TSVPK-VKLENDFLSK----------------MISE- 146 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~----~~~~~-~~~~~~~~~~----------------~~~~- 146 (251)
++|++|..+.+++.++++.++++.+++++... +...+ ..... +......... ....
T Consensus 98 ~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (541)
T TIGR03205 98 VVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFV 177 (541)
T ss_pred EEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHH
Confidence 99999999999999999999999999976321 11110 00111 1111110000 0000
Q ss_pred hhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC------CCCCChhhhhHHHH------HH
Q psy4550 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP------YDEDDREACNVFFV------WE 214 (251)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~------~~ 214 (251)
.............+++.++++|||||||.||+|+++|+++....... ..++ ....+++++..+++ ..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~ 256 (541)
T TIGR03205 178 KGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTVI 256 (541)
T ss_pred hcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHHH
Confidence 00000111233456899999999999999999999999987654322 2221 12235565544332 23
Q ss_pred HHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 215 MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 215 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
++.++..|+++++... +++..+++.|+++++|
T Consensus 257 ~~~~l~~g~~~~~~~~---~~~~~~~~~i~~~~~t 288 (541)
T TIGR03205 257 LLRSLRRGDLISLHQR---FDVAAVFRDIEEKRAT 288 (541)
T ss_pred HHHHHhcCCEEEecCC---CCHHHHHHHHHHcCCe
Confidence 5778899999888765 8999999999999987
No 102
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.97 E-value=8.6e-30 Score=234.49 Aligned_cols=233 Identities=17% Similarity=0.137 Sum_probs=175.6
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
+...++.++|.+.++++|+++|+++ +++.+||+||.++++++|+.|++.|+++||+|+|+++|+++++++++||+++|+
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~-~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGa 522 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLF-DGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGA 522 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEe-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Confidence 4556899999999999999999985 677899999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecch---------hhhhh--hhhhhcccCC----C
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEND---------FLSKM--ISENEKLHNV----D 154 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~----~ 154 (251)
+++|++|. +++.++++.++++++|++++..+.+.......+..... ..... .......... .
T Consensus 523 v~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (994)
T PRK07868 523 VAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELPGWYR 599 (994)
T ss_pred EEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCCccccccCCcchhhhhhhhcCcccccCCcccC
Confidence 99999984 68999999999999999987666554322222222110 00000 0000000000 0
Q ss_pred CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHHH------HHHhhhcCccEEEe
Q psy4550 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWE------MLRPLTQGIPMYVI 228 (251)
Q Consensus 155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~G~~~v~~ 228 (251)
.....++++++|+|| ||||.||++.++|.+...........+++..+|++++.+|++|. ++.++..|+++++.
T Consensus 600 ~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~ 678 (994)
T PRK07868 600 PNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALS 678 (994)
T ss_pred CCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEec
Confidence 111235889999998 57777888878887766555555667788999999887766442 33455566666666
Q ss_pred cCccccCchHHHhhhhccccCC
Q psy4550 229 SDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+. +++..+++.|++|+||.
T Consensus 679 ~~---~~~~~~~~~I~~~~vT~ 697 (994)
T PRK07868 679 RG---LDPDRFVQEVRQYGVTV 697 (994)
T ss_pred CC---CCHHHHHHHHHHhCCcE
Confidence 65 89999999999999983
No 103
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.97 E-value=2.2e-29 Score=220.44 Aligned_cols=234 Identities=16% Similarity=0.236 Sum_probs=172.9
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
.++.+.|.+.++++|+++|+. .+++.+||.||.++++++|.+|.+. |+++||+|+++++|+++++++++||+++|+++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~-~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 102 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFS-NLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIV 102 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEe-cCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 589999999999999999997 4677899999999999999999985 99999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeec--c----------------------------
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLE--N---------------------------- 137 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~--~---------------------------- 137 (251)
+|++|..+.+++.++++.++++++++++...+...... ...+... .
T Consensus 103 v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (562)
T PRK12492 103 VNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLP 182 (562)
T ss_pred eccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCCc
Confidence 99999999999999999999999999765433222110 0000000 0
Q ss_pred --hhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC---------CCCC-Chh
Q psy4550 138 --DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP---------YDED-DRE 205 (251)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---------~~~~-~~~ 205 (251)
..+....... ............+++++|+|||||||.||||+++|+++...+......++ +..+ +++
T Consensus 183 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (562)
T PRK12492 183 QAVPFKQALRQG-RGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVM 261 (562)
T ss_pred ccccHHHHHhcc-CCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEE
Confidence 0000000000 00001122345678999999999999999999999999877766555443 2222 344
Q ss_pred hhhHHHH------HHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 206 ACNVFFV------WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 206 ~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
++.+++. ..++..+..|++.++... .+++..+++.++++++|-
T Consensus 262 ~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~~~~t~ 310 (562)
T PRK12492 262 IAPLPLYHIYAFTANCMCMMVSGNHNVLITN--PRDIPGFIKELGKWRFSA 310 (562)
T ss_pred EEecchHHHHHHHHHHHHHhhcCceEEEecC--CcCHHHHHHHHHHhCCce
Confidence 4433322 234566788887777654 378999999999999873
No 104
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=99.97 E-value=2.8e-29 Score=219.72 Aligned_cols=233 Identities=21% Similarity=0.353 Sum_probs=174.6
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~-~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
.++.++|.+.++.+|+++|+++ .++.+||+||.+++.++|..|. +.|+++||+|+++++|+++++++++||+++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 103 (560)
T PRK08751 25 RTVAEVFATSVAKFADRPAYHS-FGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV 103 (560)
T ss_pred CcHHHHHHHHHHhCCCCceEEE-CCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 4789999999999999999985 6789999999999999999997 6899999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--hh--------------------------
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--DF-------------------------- 139 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~~-------------------------- 139 (251)
+|++|..+.+++.++++.++++++++++.....+... ....+.... ..
T Consensus 104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (560)
T PRK08751 104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRIN 183 (560)
T ss_pred eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCCC
Confidence 9999999999999999999999999987765443321 111111100 00
Q ss_pred ----hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC----CCCC-ChhhhhHH
Q psy4550 140 ----LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP----YDED-DREACNVF 210 (251)
Q Consensus 140 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~~-~~~~~~~~ 210 (251)
........ ...........++++++++|||||||.||+|.++|.++...+......++ +..+ +++++.++
T Consensus 184 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (560)
T PRK08751 184 GAIRFREALALG-RKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALP 262 (560)
T ss_pred ccccHHHHHhcc-CCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecC
Confidence 00000000 00001122345688999999999999999999999999888776655443 3333 34444333
Q ss_pred HH--H----HHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 211 FV--W----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 211 ~~--~----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
++ + ..+.++..|++.++.+. .+++..+++.++++++|
T Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~~~~t 305 (560)
T PRK08751 263 LYHIFALTANGLVFMKIGGCNHLISN--PRDMPGFVKELKKTRFT 305 (560)
T ss_pred hHHHHHHHHhhhhHhhccceEEEecC--cCCHHHHHHHHHhccee
Confidence 22 2 23555667777776664 37999999999999987
No 105
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.97 E-value=7.7e-30 Score=197.41 Aligned_cols=200 Identities=15% Similarity=0.103 Sum_probs=150.8
Q ss_pred HHHHHHhCCCceEEEec-C----CCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 19 FRNQAKRTPDKIAVVDH-D----GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 19 l~~~~~~~~~~~a~~~~-~----~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
+...++.+|+++|++.. + ++++||+|+.++++++|++|++ +|+++||+|+++++|+++++++++|++++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 46678899999999732 2 3469999999999999999998 7999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeee-----c--------chhhhhhhhhhhcccCCCCC-CC
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL-----E--------NDFLSKMISENEKLHNVDFP-QV 158 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~-~~ 158 (251)
|++ .+++++++++++..+..... ...+.+ . ..+................. ..
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAAGS-GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQFAPYEPP 147 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhcccC-CceEEEeccccccCCCCCCCCcccchhhhhhccCCCCCCCCCC
Confidence 995 77899999988876664321 111111 0 01000000011000111112 34
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCcc
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEV 232 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~ 232 (251)
.++|++.|+||||+ +|.++..+. ...+++++|+++ .+|++| +++.++..|+++++.++
T Consensus 148 ~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~r-- 211 (227)
T TIGR03089 148 DATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTH-- 211 (227)
T ss_pred CCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecC--
Confidence 56899999999985 667766554 566789999999 876543 47899999999999987
Q ss_pred ccCchHHHhhhhccccC
Q psy4550 233 IYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 233 ~~~~~~~~~~i~~~~vt 249 (251)
|+|..+++.|++||||
T Consensus 212 -Fd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 212 -PDPARLDQIAETERVT 227 (227)
T ss_pred -CCHHHHHHHHHhhcCC
Confidence 9999999999999997
No 106
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=1.8e-29 Score=220.31 Aligned_cols=228 Identities=16% Similarity=0.199 Sum_probs=178.3
Q ss_pred hhHHHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
.++.+.|...+...|+.+++.+.+ ++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~ 81 (545)
T PRK07768 2 SRFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASL 81 (545)
T ss_pred chHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccc
Confidence 468898999999999999997644 4679999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHH-------HHHHhhcCccEEEEccchhhhhhccC---CCeeeecchhhhhhhhhhhcccCCCCCCCCCC
Q psy4550 92 LPLETSYPPALL-------ESVLDDAKPSIVITKGEYMDRLERTS---VPKVKLENDFLSKMISENEKLHNVDFPQVGLD 161 (251)
Q Consensus 92 v~i~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (251)
+++++..+.+++ .++++.++++.+++++...+...... ...+... .+..... .......++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~----~~~~~~~~~ 152 (545)
T PRK07768 82 TMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTVA-----DLLAADP----IDPVETGED 152 (545)
T ss_pred cccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCceeehh-----hhcccCC----CCcCCCCCC
Confidence 999988776544 55677789999999876544332211 1111111 1111110 122344678
Q ss_pred CeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCC-ChhhhhHHHHH------HHHHhhhcCccEEEecC-ccc
Q psy4550 162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDED-DREACNVFFVW------EMLRPLTQGIPMYVISD-EVI 233 (251)
Q Consensus 162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~l~~G~~~v~~~~-~~~ 233 (251)
++++++|||||||.||+|+++|+++...+......+++..+ |++++++|+.+ .++.++..|+++++.+. ...
T Consensus 153 ~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~ 232 (545)
T PRK07768 153 DLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFL 232 (545)
T ss_pred CEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHH
Confidence 99999999999999999999999999988888888888876 78877655432 35668999999988764 222
Q ss_pred cCchHHHhhhhccccC
Q psy4550 234 YDPPRLTSGWVRLPLN 249 (251)
Q Consensus 234 ~~~~~~~~~i~~~~vt 249 (251)
.+|..+++.++++++|
T Consensus 233 ~~~~~~~~~i~~~~~~ 248 (545)
T PRK07768 233 RDPLLWAELISKYRGT 248 (545)
T ss_pred HhHHHHHHHHHHhCCE
Confidence 3788999999999986
No 107
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.97 E-value=2.9e-29 Score=214.63 Aligned_cols=202 Identities=20% Similarity=0.244 Sum_probs=164.0
Q ss_pred hhHHHHH-HHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 13 GALHYMF-RNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l-~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
+++.+.+ ...++++|+++|+++ +++.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+.+|+++
T Consensus 2 ~~~~~~~~~~~a~~~~~~~a~~~-~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~ 80 (458)
T PRK09029 2 MIFSDWPWRHWAQVRPQAIALRL-NDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARV 80 (458)
T ss_pred chhhcChHHHHHHhCCCceeeec-CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 3444455 444789999999984 77889999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSG 171 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 171 (251)
+|+++..+.+++.++++.+++++++++++... ... ...... . ...........++++++++||||
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--~~~~~~--------~----~~~~~~~~~~~~~~~a~i~~TSG 145 (458)
T PRK09029 81 LPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--LTSLHL--------Q----LVEGAHAVAWQPQRLATMTLTSG 145 (458)
T ss_pred eecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--cccccc--------c----cccccCcccCCCCCeEEEEECCC
Confidence 99999999999999999999999999876532 110 000000 0 00011223456788999999999
Q ss_pred CCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecC
Q psy4550 172 TTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISD 230 (251)
Q Consensus 172 tTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~ 230 (251)
|||.||||.+||+++...+......+++.++|+++..+|++| .++.++..|+++++.+.
T Consensus 146 TTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~ 209 (458)
T PRK09029 146 STGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK 209 (458)
T ss_pred CCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh
Confidence 999999999999999999988888899999999877665433 24567999999998773
No 108
>PRK13390 acyl-CoA synthetase; Provisional
Probab=99.97 E-value=2.7e-29 Score=217.12 Aligned_cols=225 Identities=18% Similarity=0.213 Sum_probs=163.7
Q ss_pred HHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCC
Q psy4550 21 NQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99 (251)
Q Consensus 21 ~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~ 99 (251)
.+++++|+++|+++. +++.+||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++++|+++..+
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~ 84 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence 456789999999853 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccEEEEccchhhhhhccC--CCe-eeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCC
Q psy4550 100 PALLESVLDDAKPSIVITKGEYMDRLERTS--VPK-VKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKP 176 (251)
Q Consensus 100 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~p 176 (251)
++++.+++++++++.+++++...+...... ... +...... ....................++.++|+|||||||.|
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P 163 (501)
T PRK13390 85 APEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEI-DGFGSFEAALAGAGPRLTEQPCGAVMLYSSGTTGFP 163 (501)
T ss_pred HHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecCcc-cccccHHHHhcccCCCCCCCcccEEEEeCCCCCCCC
Confidence 999999999999999999876533222111 010 1110000 000000000000001111223579999999999999
Q ss_pred ceEEe--ccHHHHHHH----HHHHHhCCCCCCChhhhhHHHHHH-----HHHhhhcCccEEEecCccccCchHHHhhhhc
Q psy4550 177 KGIVC--PHRGAVHAY----KWRHRAYPYDEDDREACNVFFVWE-----MLRPLTQGIPMYVISDEVIYDPPRLTSGWVR 245 (251)
Q Consensus 177 K~v~~--s~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~ 245 (251)
|||++ +|.++.... ......+++..+++++..+|++|. .+..+..|+++++.+. +++..+++.|++
T Consensus 164 KgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~ 240 (501)
T PRK13390 164 KGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKR---FDAQATLGHVER 240 (501)
T ss_pred CEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCC---cCHHHHHHHHHH
Confidence 99995 566655432 112345677888888876654331 2334578999998876 899999999999
Q ss_pred cccC
Q psy4550 246 LPLN 249 (251)
Q Consensus 246 ~~vt 249 (251)
+++|
T Consensus 241 ~~~t 244 (501)
T PRK13390 241 YRIT 244 (501)
T ss_pred cCCe
Confidence 9987
No 109
>PRK08308 acyl-CoA synthetase; Validated
Probab=99.97 E-value=3.9e-29 Score=211.19 Aligned_cols=183 Identities=15% Similarity=0.137 Sum_probs=158.4
Q ss_pred cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 35 HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 35 ~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+++++||+||.++++++|+.|. .|+++|++|+++++|+++++.+++|++++|++++|+++..+.+++.++++.++++.
T Consensus 4 ~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~ 82 (414)
T PRK08308 4 VNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHG 82 (414)
T ss_pred ecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCE
Confidence 46789999999999999999985 67999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH
Q psy4550 115 VITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH 194 (251)
Q Consensus 115 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~ 194 (251)
+++++.... . .......++++++++|||||||.||+|++||+++..++....
T Consensus 83 ~i~~~~~~~-----------~-----------------~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~ 134 (414)
T PRK08308 83 LLYGESDFT-----------K-----------------LEAVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYN 134 (414)
T ss_pred EEecCcccc-----------c-----------------ccCCCCCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHH
Confidence 998763110 0 001123567899999999999999999999999999888888
Q ss_pred HhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 195 RAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 195 ~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
..+++..+|+.+..+|+ ..+++.++..|+++++.+. ++|..+++.++++++|
T Consensus 135 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~l~~~~~t 192 (414)
T PRK08308 135 EALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITN---KNPKFALNILRNTPQH 192 (414)
T ss_pred HhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCC---CCHHHHHHHHHHhCCe
Confidence 88888888887654432 3457889999999999987 8999999999999987
No 110
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=1.2e-28 Score=215.67 Aligned_cols=235 Identities=24% Similarity=0.358 Sum_probs=174.1
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
+.++.++|...++++|+++|+++ +++.+||.||.++++++|.+|.+ .|+++|++|+++++|+++++++++||+++|++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~-~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 100 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFIN-MGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMI 100 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEE-CCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 45799999999999999999985 67789999999999999999985 89999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--hhhh-----------------------
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--DFLS----------------------- 141 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~~~~----------------------- 141 (251)
++|++|..+.+++.++++.++++.++++++..+.+.+. ....+.... +...
T Consensus 101 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PRK08974 101 VVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHL 180 (560)
T ss_pred EeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccC
Confidence 99999999999999999999999999987654433221 111111100 0000
Q ss_pred -----hhhhhh-hcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC---CCCCChhhhhHHH-
Q psy4550 142 -----KMISEN-EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP---YDEDDREACNVFF- 211 (251)
Q Consensus 142 -----~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~- 211 (251)
...... ............++++++++|||||||.||+|.++|.++..+.......+. ...++.++..+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 260 (560)
T PRK08974 181 PDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLY 260 (560)
T ss_pred CCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHH
Confidence 000000 000001112245789999999999999999999999999887655443332 2234444443332
Q ss_pred -----HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 212 -----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 212 -----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
....+.++..|+++++... ..++..+++.++++++|
T Consensus 261 ~~~~~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~~i~~~~~t 301 (560)
T PRK08974 261 HIFALTVNCLLFIELGGQNLLITN--PRDIPGFVKELKKYPFT 301 (560)
T ss_pred HHHHHHHHHHHHhhcCCeEEEecC--ccCHHHHHHHHHhcCcc
Confidence 2235667788988777654 37899999999999987
No 111
>PRK13391 acyl-CoA synthetase; Provisional
Probab=99.96 E-value=2.2e-28 Score=211.93 Aligned_cols=227 Identities=22% Similarity=0.295 Sum_probs=170.1
Q ss_pred HHHHHhCCCceEEEe-cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC
Q psy4550 20 RNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98 (251)
Q Consensus 20 ~~~~~~~~~~~a~~~-~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~ 98 (251)
...++++|+++|+++ .+++.+||.||.+++.+++++|.+.|+++|++|+++++|+++++++++||+++|++++++++..
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~ 83 (511)
T PRK13391 4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL 83 (511)
T ss_pred hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence 356788999999975 3577899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCccEEEEccchhhhhhccC-----C-Ceeeecchh-hhhhhhhhhcc-cCCCCCCCCCCCeEEEEecc
Q psy4550 99 PPALLESVLDDAKPSIVITKGEYMDRLERTS-----V-PKVKLENDF-LSKMISENEKL-HNVDFPQVGLDDIAYIVYSS 170 (251)
Q Consensus 99 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TS 170 (251)
+.+++.++++.++++.++++++..+...+.. . ..+....+. ........... ..........++.++++|||
T Consensus 84 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TS 163 (511)
T PRK13391 84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLPATPIADESLGTDMLYSS 163 (511)
T ss_pred CHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCCCCCCCCcccccEEEECC
Confidence 9999999999999999999987655432211 0 111111100 00000000000 00111112344678999999
Q ss_pred CCCCCCceEEe--ccHHHHH---HHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecCccccCchHHH
Q psy4550 171 GTTGKPKGIVC--PHRGAVH---AYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISDEVIYDPPRLT 240 (251)
Q Consensus 171 GtTG~pK~v~~--s~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~~~~~~~~~~ 240 (251)
||||.||||++ +|.++.. ........+++.++++++..++++| ..+.++..|+++++.+. +++..++
T Consensus 164 GtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~ 240 (511)
T PRK13391 164 GTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEH---FDAEQYL 240 (511)
T ss_pred CCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCC---CCHHHHH
Confidence 99999999995 4666543 2344556677888888877554433 35678899999999986 8999999
Q ss_pred hhhhccccC
Q psy4550 241 SGWVRLPLN 249 (251)
Q Consensus 241 ~~i~~~~vt 249 (251)
+.++++++|
T Consensus 241 ~~i~~~~~t 249 (511)
T PRK13391 241 ALIEEYGVT 249 (511)
T ss_pred HHHHHhCCe
Confidence 999999987
No 112
>PRK07787 acyl-CoA synthetase; Validated
Probab=99.96 E-value=1.5e-28 Score=210.95 Aligned_cols=203 Identities=22% Similarity=0.219 Sum_probs=165.9
Q ss_pred HHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHH
Q psy4550 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPAL 102 (251)
Q Consensus 23 ~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~ 102 (251)
.++.++++|+++ +++++||+||.++++++|..|+ ++|+|+++++|+++++++++||+++|++++|+++..+.++
T Consensus 10 ~~~~~~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~ 83 (471)
T PRK07787 10 AAAADIADAVRI-GGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAE 83 (471)
T ss_pred hcccCCceEEEe-CCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHH
Confidence 457789999974 7889999999999999999986 4799999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEec
Q psy4550 103 LESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182 (251)
Q Consensus 103 l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s 182 (251)
+.++++.+++++++++++... ...+........ ... .......++++++++|||||||.||+|+++
T Consensus 84 l~~~l~~~~~~~il~~~~~~~----~~~~~~~~~~~~--------~~~--~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t 149 (471)
T PRK07787 84 RRHILADSGAQAWLGPAPDDP----AGLPHVPVRLHA--------RSW--HRYPEPDPDAPALIVYTSGTTGPPKGVVLS 149 (471)
T ss_pred HHHHHHhcCCCEEEecCCccc----ccccceeeeccc--------ccc--ccCCCCCCCceEEEEECCCCCCCCCEEEEe
Confidence 999999999999999764210 011111110000 000 111224568999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 183 HRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
|+++...+......+++..++++++.+++ ..+++.++..|+++++.+. +++..+++.|+ +++|
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~-~~~t 218 (471)
T PRK07787 150 RRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGR---PTPEAYAQALS-EGGT 218 (471)
T ss_pred HHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCC---CCHHHHHHHHh-hCce
Confidence 99999999888888899999988765543 4467889999999999886 89999999999 8876
No 113
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=99.96 E-value=4.8e-28 Score=204.00 Aligned_cols=208 Identities=30% Similarity=0.485 Sum_probs=167.4
Q ss_pred eHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 41 TFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 41 T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
||.||.+.+.+++++|.+ .|+++||+|+++++|+++++++++||+.+|++++|+++..+.+++.++++.++++++++++
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCC
Q psy4550 120 EYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPY 199 (251)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~ 199 (251)
+..................+....... ............+++++++|||||||.||+|.+||+++...+......+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~ 158 (408)
T TIGR01733 81 ALASRLAGLVLPIILVDPLELAALDDA--PAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGL 158 (408)
T ss_pred chhhhccccCCceEEechhhhhhcccc--cccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCC
Confidence 877666544333333322221111111 000011112457899999999999999999999999999999998889999
Q ss_pred CCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 200 DEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 200 ~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
.++|++++..++ ...++.++..|+++++.+......+..+.+.++++++|.
T Consensus 159 ~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 214 (408)
T TIGR01733 159 DPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTV 214 (408)
T ss_pred CCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceE
Confidence 999988775543 345788999999999988732224789999999998873
No 114
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.96 E-value=1.2e-27 Score=203.23 Aligned_cols=194 Identities=19% Similarity=0.225 Sum_probs=158.0
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 41 T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.+++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCC
Q psy4550 121 YMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD 200 (251)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~ 200 (251)
..... .... ... ....... ...........+++++++|||||||.||+|.++|+++...+......++++
T Consensus 81 ~~~~~----~~~~----~~~-~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~ 150 (436)
T TIGR01923 81 LEEKD----FQAD----SLD-RIEAAGR-YETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFT 150 (436)
T ss_pred ccccc----eeec----chH-hhhhccc-ccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCC
Confidence 43211 0000 000 0000000 001112344567899999999999999999999999999999888899999
Q ss_pred CCChhhhhHHHH-----HHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 201 EDDREACNVFFV-----WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 201 ~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
++|+++..++++ ..++.++..|+++++.+. ++ .+++.|+++++|
T Consensus 151 ~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~---~~--~~~~~l~~~~~t 199 (436)
T TIGR01923 151 EDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK---FN--QLLEMIANERVT 199 (436)
T ss_pred CCceEEEccCcHhHHHHHHHHHHHhcCceEEecch---HH--HHHHHHHHhCCe
Confidence 999987755432 246788999999999886 43 999999999987
No 115
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.96 E-value=2.1e-27 Score=205.37 Aligned_cols=211 Identities=21% Similarity=0.234 Sum_probs=158.1
Q ss_pred ecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 34 DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 34 ~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
+.+++.+||+||.+.+.+++++|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++
T Consensus 6 ~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~ 85 (502)
T PRK08276 6 APSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAK 85 (502)
T ss_pred cCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccchhhhhhcc------CCCeeeecchhhh---hhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccH
Q psy4550 114 IVITKGEYMDRLERT------SVPKVKLENDFLS---KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184 (251)
Q Consensus 114 ~vi~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~ 184 (251)
++++++...+...+. ....+........ ........ .........++.++++|||||||.||+|.++|.
T Consensus 86 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~~~~ 163 (502)
T PRK08276 86 VLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAA--QPDTPIADETAGADMLYSSGTTGRPKGIKRPLP 163 (502)
T ss_pred EEEEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhc--CCCCCCCCCCcceEEEECCCCCCCCceEEEccC
Confidence 999988766554322 1122222110000 00000000 011222355678999999999999999999988
Q ss_pred HHHHHH------HHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 185 GAVHAY------KWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 185 ~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
++.... ...........++++++..++++ ..+.++..|+++++.+. ++|..+++.++++++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t 236 (502)
T PRK08276 164 GLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEK---FDAEEALALIERYRVT 236 (502)
T ss_pred CcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCC---CCHHHHHHHHHHhCCe
Confidence 765322 22222222345677776554432 24568999999999886 8999999999999987
No 116
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.95 E-value=2.9e-27 Score=204.80 Aligned_cols=217 Identities=18% Similarity=0.218 Sum_probs=161.6
Q ss_pred eEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhh
Q psy4550 30 IAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDD 109 (251)
Q Consensus 30 ~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~ 109 (251)
.|+.+ +++.+||.||.++++++|++|.++|+++|++|+++++|+++++++++||+++|+++++++|..+.+++.++++.
T Consensus 3 ~~~~~-~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~ 81 (509)
T PRK12406 3 ATIIS-GDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILED 81 (509)
T ss_pred eEEEE-CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhc
Confidence 35553 67789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEccchhhhhhccC---CCeeeecchhh--------hh-------hhhhhhc-ccCCCCCCCCCCCeEEEEecc
Q psy4550 110 AKPSIVITKGEYMDRLERTS---VPKVKLENDFL--------SK-------MISENEK-LHNVDFPQVGLDDIAYIVYSS 170 (251)
Q Consensus 110 ~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~--------~~-------~~~~~~~-~~~~~~~~~~~~~~~~i~~TS 170 (251)
++++.++++.+..+.+.... ...+....... .. ....... ...........+++++++|||
T Consensus 82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 161 (509)
T PRK12406 82 SGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTS 161 (509)
T ss_pred cCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCccCCCCCCCceEEEECC
Confidence 99999999887665443211 11111100000 00 0000000 000111233567999999999
Q ss_pred CCCCCCceEEeccHHH---HHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550 171 GTTGKPKGIVCPHRGA---VHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDEVIYDPPRLTSG 242 (251)
Q Consensus 171 GtTG~pK~v~~s~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 242 (251)
||||.||+|+++|.+. ..........+++.++++++...+++ ...+.++..|+++++.+. ++|..+++.
T Consensus 162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~ 238 (509)
T PRK12406 162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPR---FDPEELLQL 238 (509)
T ss_pred CCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccC---CCHHHHHHH
Confidence 9999999999876653 44444555677888898887654432 123456788999999886 899999999
Q ss_pred hhccccCC
Q psy4550 243 WVRLPLNG 250 (251)
Q Consensus 243 i~~~~vt~ 250 (251)
++++++|.
T Consensus 239 l~~~~~t~ 246 (509)
T PRK12406 239 IERHRITH 246 (509)
T ss_pred HHHcCCeE
Confidence 99999873
No 117
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=99.95 E-value=5.6e-27 Score=199.94 Aligned_cols=168 Identities=9% Similarity=0.077 Sum_probs=137.5
Q ss_pred eeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
|.|+||.+++.++|++|+++|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 7899999999999999999988 579999999999999999999999999999999999999999999999999999987
Q ss_pred cchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC
Q psy4550 119 GEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP 198 (251)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~ 198 (251)
++...... . . . . .......+++.++++|||||||.||||++||+++...+......++
T Consensus 100 ~~~~~~~~---------~-----~---~--~---~~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~ 157 (452)
T PRK07445 100 DQLKLSHP---------P-----P---L--P---SQGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQ 157 (452)
T ss_pred CccccccC---------C-----C---C--C---ccccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhc
Confidence 65432100 0 0 0 0 0111235689999999999999999999999999988888777777
Q ss_pred CCCCChhhhhHHH-----HHHHHHhhhcCccEEEecC
Q psy4550 199 YDEDDREACNVFF-----VWEMLRPLTQGIPMYVISD 230 (251)
Q Consensus 199 ~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~ 230 (251)
+.+. +.++.+|+ +..++.++..|+++++.+.
T Consensus 158 ~~~~-~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~ 193 (452)
T PRK07445 158 LQQV-NSFCVLPLYHVSGLMQFMRSFLTGGKLVILPY 193 (452)
T ss_pred CCCC-ceEeccCchhhhhHHHHHHHHHcCCeEEEcCh
Confidence 7554 44444443 2346778999999999874
No 118
>KOG1180|consensus
Probab=99.95 E-value=8.3e-27 Score=191.58 Aligned_cols=226 Identities=19% Similarity=0.222 Sum_probs=179.5
Q ss_pred CCCCcCchhhhHHHHHHHHHHhCCCceEEEe-----------cCCC-----------eeeHHHHHHHHHHHHHHHHhcCC
Q psy4550 4 VNLSDYDAEGALHYMFRNQAKRTPDKIAVVD-----------HDGR-----------SITFKQLDEWTDIVGTYLINQGC 61 (251)
Q Consensus 4 ~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~-----------~~~~-----------~~T~~~l~~~~~~~a~~L~~~g~ 61 (251)
+-.+..+...|+.+++.+..+++.++.++-. .+|+ ..||.|+..++.+++.+|.+.|+
T Consensus 32 L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~ 111 (678)
T KOG1180|consen 32 LVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGL 111 (678)
T ss_pred ccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCC
Confidence 3455677788999999999999999999741 2332 47999999999999999999999
Q ss_pred CCCCE-EEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeeee
Q psy4550 62 IVGST-VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVKL 135 (251)
Q Consensus 62 ~~g~~-V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~ 135 (251)
+++++ ++++++.+.+|+.++.||++.+..+|.++.++..+.+.|-+++++++.|||+.+...++... ....++.
T Consensus 112 k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~ 191 (678)
T KOG1180|consen 112 KPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIY 191 (678)
T ss_pred CCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEE
Confidence 97766 99999999999999999999999999999999999999999999999999999988765432 1122221
Q ss_pred cc---------------------hhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH
Q psy4550 136 EN---------------------DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH 194 (251)
Q Consensus 136 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~ 194 (251)
.+ ..++.+........ .++.+..++|+|+|+|||||||.||||+++|.|+++.+....
T Consensus 192 ~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~-~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~ 270 (678)
T KOG1180|consen 192 FDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE-IPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVG 270 (678)
T ss_pred ecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC-CCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhc
Confidence 11 01122222222221 334455889999999999999999999999999999998888
Q ss_pred HhC-CCCCCChhhhhHHHHH--HH---HHhhhcCccEEEecC
Q psy4550 195 RAY-PYDEDDREACNVFFVW--EM---LRPLTQGIPMYVISD 230 (251)
Q Consensus 195 ~~~-~~~~~~~~~~~~~~~~--~~---~~~l~~G~~~v~~~~ 230 (251)
... .+.+.|+++..+|+.| ++ +.+++.|+++=..+.
T Consensus 271 ~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~ 312 (678)
T KOG1180|consen 271 ENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSP 312 (678)
T ss_pred ccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCc
Confidence 766 5889999988777654 33 678888988777664
No 119
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=7.6e-25 Score=194.72 Aligned_cols=231 Identities=27% Similarity=0.450 Sum_probs=189.5
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
|...++.+.|.+.+.+.|++.|+. .++..+||+++..+++++|+.|.+.|+.+++.|+++.+.+.++++.++|++++|+
T Consensus 224 ~~~~~i~~~f~~~a~~~p~~~a~~-~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~ 302 (642)
T COG1020 224 PLRLTIHLLFEEQAATTPDAVALV-RGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGA 302 (642)
T ss_pred CccchHHHHHHHHHHhCCCceeEe-cCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCC
Confidence 334689999999999999999997 4578899999999999999999999999999999999889999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEec
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYS 169 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T 169 (251)
.++|++|..+.+++.+++++++++.+++............. +........ .... ........+++.+|++||
T Consensus 303 ~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~--~~~~~~~~~~~~ayiiyt 374 (642)
T COG1020 303 AYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--LALDDALSE----IPDT--DPIPQALLGDALAYIIYT 374 (642)
T ss_pred eEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc--ccccccccc----CCcc--CcccccCCCCCeEEEEEc
Confidence 99999999999999999999999999998443221111111 111111110 0000 001223456899999999
Q ss_pred cCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH-----HHHHHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550 170 SGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF-----FVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV 244 (251)
Q Consensus 170 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~ 244 (251)
|||||.||||+.+|+++..........++.+.+|+++...+ ..+.++.++..|+++++.+.....++..+.+.++
T Consensus 375 sgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~ 454 (642)
T COG1020 375 SGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLE 454 (642)
T ss_pred cCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHH
Confidence 99999999999999999998888888899999998876543 3578999999999999999888889999999999
Q ss_pred ccccC
Q psy4550 245 RLPLN 249 (251)
Q Consensus 245 ~~~vt 249 (251)
++++|
T Consensus 455 ~~~vt 459 (642)
T COG1020 455 AQGIT 459 (642)
T ss_pred HcCCE
Confidence 99887
No 120
>KOG1175|consensus
Probab=99.93 E-value=2.3e-24 Score=183.77 Aligned_cols=221 Identities=22% Similarity=0.275 Sum_probs=172.0
Q ss_pred CCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCH
Q psy4550 26 TPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100 (251)
Q Consensus 26 ~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~ 100 (251)
.+++++.+.. +...+||.|+.+++.++|..|.+.|+++||+|++++|..++++++.+||.++|++.+++-..+++
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~ 157 (626)
T KOG1175|consen 78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSA 157 (626)
T ss_pred CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCH
Confidence 4777887642 12348999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccEEEEccchhhhhhccC-------------------CCeeeecc---h-hhhhhhhhhhcccCCCCCC
Q psy4550 101 ALLESVLDDAKPSIVITKGEYMDRLERTS-------------------VPKVKLEN---D-FLSKMISENEKLHNVDFPQ 157 (251)
Q Consensus 101 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------------------~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~ 157 (251)
.++...++.+++++|++.+......+... ...+.... + ++........ .......
T Consensus 158 ~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~--~~~~~~~ 235 (626)
T KOG1175|consen 158 KELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKAS--PEHPCVP 235 (626)
T ss_pred HHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcC--CCCCcee
Confidence 99999999999999999876433221110 00000000 0 1111111111 1122556
Q ss_pred CCCCCeEEEEeccCCCCCCceEEeccHH-HHHHHHHHHHhCCCCCCChhhhhH------HHHHHHHHhhhcCccEEEecC
Q psy4550 158 VGLDDIAYIVYSSGTTGKPKGIVCPHRG-AVHAYKWRHRAYPYDEDDREACNV------FFVWEMLRPLTQGIPMYVISD 230 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~G~~~v~~~~ 230 (251)
.+.+|+.+|+|||||||.||++.+++.. ++..+......++.+++|++.+.. .+.+..+.+|..|+++++...
T Consensus 236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g 315 (626)
T KOG1175|consen 236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEG 315 (626)
T ss_pred cCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcC
Confidence 7778999999999999999999998886 567777777788999999998744 345567889999999999885
Q ss_pred ccccCchHHHhhhhccccC
Q psy4550 231 EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 231 ~~~~~~~~~~~~i~~~~vt 249 (251)
. ++++..+++.+.+|+||
T Consensus 316 ~-p~~~~~~~~~v~k~~it 333 (626)
T KOG1175|consen 316 P-PFDPGRIWKILDKYKVT 333 (626)
T ss_pred C-CCChhhhhhhHhhcceE
Confidence 2 45999999999999997
No 121
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.91 E-value=1.4e-23 Score=181.31 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=128.9
Q ss_pred ccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh------hhhhcc----CCCeeeec--c-
Q psy4550 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM------DRLERT----SVPKVKLE--N- 137 (251)
Q Consensus 71 ~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~----~~~~~~~~--~- 137 (251)
++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++... +.+.+. ....+... .
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 5899999999999999999999999999999999999999999999986431 111110 11111110 0
Q ss_pred -----------hhhhhhhhhhhc---cc-CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCC
Q psy4550 138 -----------DFLSKMISENEK---LH-NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDED 202 (251)
Q Consensus 138 -----------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~ 202 (251)
.+.......... .. ........++++++|+|||||||.||||++||+++..+.......+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 160 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG 160 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence 011111000000 00 001112356899999999999999999999999998877666667788899
Q ss_pred ChhhhhHHHH-----HHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550 203 DREACNVFFV-----WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 203 ~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
|++++.+|+. ..++.++..|+++++.+. .+++..+++.|+++++|.
T Consensus 161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~--~~~~~~~~~~i~~~~vt~ 211 (499)
T PLN03051 161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGG--APLGRGFGKFVQDAGVTV 211 (499)
T ss_pred CEEEEccCcceeeehHHHHHHHHcCCEEEecCC--CCCcHHHHHHHHHhCCcE
Confidence 9988766543 346788999999999874 378999999999999983
No 122
>KOG3628|consensus
Probab=99.85 E-value=1.4e-19 Score=158.80 Aligned_cols=237 Identities=14% Similarity=0.171 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHHhCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHK 86 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~ 86 (251)
.++.++|+..++++|+.+|+.+.+ ++++||.+|.++|++++..|... -+++||.|++++++++|++++++||+.
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 689999999999999999998643 36799999999999999999987 589999999999999999999999999
Q ss_pred HCCeEeeCCCCC------CHHHHHHHHhhcCccEEEEccchhhhhhcc---------CCCeeeecchhhhhhhhhhhcc-
Q psy4550 87 AGGGYLPLETSY------PPALLESVLDDAKPSIVITKGEYMDRLERT---------SVPKVKLENDFLSKMISENEKL- 150 (251)
Q Consensus 87 ~G~~~v~i~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~- 150 (251)
+|++++|+.|.- ..+.+..+++.+++..|+++......++.. ..+.+..-.+............
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~k~~~~~~ 929 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIRKRKKNIK 929 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhhhhhhhhh
Confidence 999999998844 357788999999999999998765554432 2222222222222222222111
Q ss_pred ---cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhh------hHHHHHHHHHhhhc
Q psy4550 151 ---HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREAC------NVFFVWEMLRPLTQ 221 (251)
Q Consensus 151 ---~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~ 221 (251)
...++....++.+|++-|.--++|.--++..||.++++.++.......+.+..-++. -+.+.+..|..+++
T Consensus 930 k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVys 1009 (1363)
T KOG3628|consen 930 KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYS 1009 (1363)
T ss_pred ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHc
Confidence 112233456678999999999999999999999999999998888777665554433 23557788899999
Q ss_pred CccEEEecC-ccccCchHHHhhhhccccC
Q psy4550 222 GIPMYVISD-EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 222 G~~~v~~~~-~~~~~~~~~~~~i~~~~vt 249 (251)
|.+.++.++ +..-+|..|++.|++|||.
T Consensus 1010 Gh~T~Li~p~~l~nnpsLll~~i~~~kvk 1038 (1363)
T KOG3628|consen 1010 GHPTLLISPMDLENNPSLLLQIISQYKVK 1038 (1363)
T ss_pred CCceeecCHHHhhcCHHHHHHHHhccccc
Confidence 987666664 5566999999999999974
No 123
>KOG1178|consensus
Probab=99.49 E-value=9.9e-14 Score=124.90 Aligned_cols=235 Identities=23% Similarity=0.378 Sum_probs=157.5
Q ss_pred hhhHHHHHHHHHHhCCCceEEEec-----CC--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDH-----DG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~-----~~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~ 84 (251)
+.++.+.+.+.+...|.+.+..+. .+ ..+||++....++.+++.|...|...|+.|++++..+.++++..+++
T Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~ 114 (1032)
T KOG1178|consen 35 MGTLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAV 114 (1032)
T ss_pred hcchhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeeh
Confidence 346677888889999988877531 12 46999999999999999999999999999999999999999999999
Q ss_pred HHHCCeEeeCCCCCC----HHHHHHHH---hhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCC
Q psy4550 85 HKAGGGYLPLETSYP----PALLESVL---DDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ 157 (251)
Q Consensus 85 ~~~G~~~v~i~~~~~----~~~l~~~l---~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (251)
+++|..+++++|.++ ++++..+. ......++.-. +..........+...+... .+................
T Consensus 115 ~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l-~i~~~~~~~~~~~~sv~~~-~~~f~~~~~~~~~r~~~~ 192 (1032)
T KOG1178|consen 115 LAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRL-NIIDILLNSLFPKLSVETI-ADSFQMVLHNEDTREIRV 192 (1032)
T ss_pred hhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhh-hhHHHHhhccccccchhhc-cchhhhhhccCCCcceee
Confidence 999999999999998 33222211 11111111100 0000000000011000000 111111111111122233
Q ss_pred CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH------HHHH-HHHhhhcCccEEEecC
Q psy4550 158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF------FVWE-MLRPLTQGIPMYVISD 230 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~l~~G~~~v~~~~ 230 (251)
.-++..+++.||||+||.||+|.-+|..+.....+....+..+..+.+ ...+ .... +...+..|..++.+..
T Consensus 193 ~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~ 271 (1032)
T KOG1178|consen 193 GGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNLLVPTA 271 (1032)
T ss_pred ecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHHHHhhHhhcCceeecccc
Confidence 455678899999999999999999999999999999999998888876 3222 1233 3455666666666666
Q ss_pred ccccCchHHHhhhhccccC
Q psy4550 231 EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 231 ~~~~~~~~~~~~i~~~~vt 249 (251)
...-+|..+.+.+++|+++
T Consensus 272 ~~~~~~~~l~~~le~y~i~ 290 (1032)
T KOG1178|consen 272 TIKDTPGQLASTLERYGIT 290 (1032)
T ss_pred cCccchhhHHHHHHhhhhe
Confidence 4444589999999999886
No 124
>KOG3628|consensus
Probab=99.36 E-value=3.6e-12 Score=113.07 Aligned_cols=236 Identities=16% Similarity=0.210 Sum_probs=169.5
Q ss_pred hhhHHHHHHHHHHhCCCceEEEe--cCC--CeeeHHHHHHHHHHHHH-HHHhcCCCCCCEEEEEccCC--HHHHHHHHHH
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVD--HDG--RSITFKQLDEWTDIVGT-YLINQGCIVGSTVGVLMERC--LEWTISYIAI 84 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~--~~~--~~~T~~~l~~~~~~~a~-~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~ 84 (251)
+..+..++...-.+++...|.+. ..| ..+||..+..++.+.|+ .|-+-|+.++|+|.++...+ +++++..++|
T Consensus 93 ~~d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc 172 (1363)
T KOG3628|consen 93 LTDIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGC 172 (1363)
T ss_pred hcchHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccc
Confidence 34566677777778888888874 334 35999999999999999 56667999999999999976 8999999999
Q ss_pred HHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC-Ceeeecchhhhhhhhh-hhcccCCCCCCCCCCC
Q psy4550 85 HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV-PKVKLENDFLSKMISE-NEKLHNVDFPQVGLDD 162 (251)
Q Consensus 85 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 162 (251)
...|.+.+|+.+..+.+++..+++....+++++..+-...+..... ....-.-.|+...... .-.......+...-.
T Consensus 173 ~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~~~k~~~~~~k~~~P~~~~~- 251 (1363)
T KOG3628|consen 173 FLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTNDFKGNYTKDKIKKPRMQLP- 251 (1363)
T ss_pred cccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhcccccceeehhhccCCceeee-
Confidence 9999999999999999999999999999999998776555443221 1111011111111111 001111222333333
Q ss_pred eEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh--------------------CCCCCCChhhh------hHHHHHHHH
Q psy4550 163 IAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA--------------------YPYDEDDREAC------NVFFVWEML 216 (251)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------------------~~~~~~~~~~~------~~~~~~~~~ 216 (251)
.++|-||++++|+--|++.+|+ ++.+.+..... ++....+.++. .+.+..+++
T Consensus 252 ~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~ 330 (1363)
T KOG3628|consen 252 YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVL 330 (1363)
T ss_pred eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhh
Confidence 8899999999999999999999 55544332221 12222333322 224567899
Q ss_pred HhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 217 RPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 217 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.++++|.|.+.+++...+.|..+.+++.+|+++
T Consensus 331 ~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~ 363 (1363)
T KOG3628|consen 331 VALFSGYCTIGCPKEVLKPPGLIANLITKYRAT 363 (1363)
T ss_pred hhhhcCceeecCchhhcCCCcchhhhhccceeE
Confidence 999999999999998889999999999999875
No 125
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.32 E-value=3.8e-12 Score=106.32 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=66.8
Q ss_pred CCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCC--ChhhhhHHHH------HHHHHhhhcCccEEEecCcc
Q psy4550 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDED--DREACNVFFV------WEMLRPLTQGIPMYVISDEV 232 (251)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~l~~G~~~v~~~~~~ 232 (251)
+..++++|||||||.||||++||+++...+......+++..+ +++++.+|++ +.++.++..|+++++.+.
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~-- 172 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA-- 172 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC--
Confidence 457899999999999999999999999988888887777544 4576654432 345778889999999886
Q ss_pred ccCchHHHhhhhcc
Q psy4550 233 IYDPPRLTSGWVRL 246 (251)
Q Consensus 233 ~~~~~~~~~~i~~~ 246 (251)
+++..+++.++.+
T Consensus 173 -~~~~~~l~~i~~~ 185 (386)
T TIGR02372 173 -APASGIMRHARPG 185 (386)
T ss_pred -CChHHHHHhhccC
Confidence 8898898888764
No 126
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.27 E-value=1.5e-11 Score=102.18 Aligned_cols=90 Identities=21% Similarity=0.189 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCc
Q psy4550 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDE 231 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~ 231 (251)
...++++++++|||||||.||+|+++|+++..........++ ..++++..+|++ ..++.++..|++.++....
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~--~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~ 108 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRLG--GPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVS 108 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhccC--CCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcC
Confidence 345689999999999999999999999999988776655443 344554443332 2356788899998883322
Q ss_pred cccCchHHHhhhhcccc
Q psy4550 232 VIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~v 248 (251)
..+++..+++.+++++.
T Consensus 109 ~~~~~~~~~~~i~~~~~ 125 (358)
T PRK07824 109 AGFDPTALPRAVAELGG 125 (358)
T ss_pred CCcCHHHHHHHHHHhCC
Confidence 24899999999999873
No 127
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=98.97 E-value=1.4e-09 Score=92.44 Aligned_cols=88 Identities=17% Similarity=-0.016 Sum_probs=67.3
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHH---HHHhCCCCCCChhhhhHH------HHHHHHHhhhcCccEEEec
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW---RHRAYPYDEDDREACNVF------FVWEMLRPLTQGIPMYVIS 229 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~G~~~v~~~ 229 (251)
..++++.+++||||||.||++.++|.++...... ....+++.++|++++..+ .....+.....|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 4567889999999999999999999998765333 234468888888765321 1122455778899998887
Q ss_pred CccccCchHHHhhhhccccC
Q psy4550 230 DEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 230 ~~~~~~~~~~~~~i~~~~vt 249 (251)
. .++..+++.|+++++|
T Consensus 153 ~---~~~~~~~~~i~~~~~t 169 (422)
T TIGR02155 153 G---GQTEKQVQLIQDFKPD 169 (422)
T ss_pred C---CCHHHHHHHHHHHCCC
Confidence 6 6789999999999997
No 128
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=98.65 E-value=4.3e-08 Score=83.83 Aligned_cols=88 Identities=17% Similarity=0.097 Sum_probs=62.0
Q ss_pred CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhHHH-----HHH-HHHhhhcCccEEEe
Q psy4550 158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNVFF-----VWE-MLRPLTQGIPMYVI 228 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~-~~~~l~~G~~~v~~ 228 (251)
.+.++++.+.+||||||.||+|.+||.++......... ..++.++|+++...+. ... .+.+...|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 34568889999999999999999999998876554443 3488888887664322 112 24556778876543
Q ss_pred cCccccCchHHHhhhhccccCC
Q psy4550 229 SDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
.. ....++.|+++++|.
T Consensus 163 ~~-----~~~~~~~i~~~~~t~ 179 (445)
T TIGR03335 163 GK-----CTFPIRIIESYRPTG 179 (445)
T ss_pred Cc-----hhHHHHHHHHhCCCE
Confidence 32 245688898888873
No 129
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=96.90 E-value=0.0086 Score=50.48 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=71.0
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH--HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW--TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~--~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+|+.+....+..+|+.|...|..+||+|.+....+... +...+|+.++|+.++|+.+. .-+.-..++++.++.+|.+
T Consensus 110 ~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~~ 188 (438)
T COG1541 110 YTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIAA 188 (438)
T ss_pred cCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEEE
Confidence 89999999999999999999999999999988833222 67889999999999999884 4455667889999999999
Q ss_pred ccchhhh
Q psy4550 118 KGEYMDR 124 (251)
Q Consensus 118 ~~~~~~~ 124 (251)
.+.+.-.
T Consensus 189 tps~~l~ 195 (438)
T COG1541 189 TPSYLLY 195 (438)
T ss_pred ChHHHHH
Confidence 8876443
No 130
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=96.81 E-value=0.0028 Score=53.29 Aligned_cols=93 Identities=18% Similarity=0.013 Sum_probs=62.4
Q ss_pred CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhHH-H--H--HH-HHHhhhcCccE
Q psy4550 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNVF-F--V--WE-MLRPLTQGIPM 225 (251)
Q Consensus 155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~-~--~--~~-~~~~l~~G~~~ 225 (251)
....+.++...|--||||||+|+-+.++...+...+..++. ..+...+|++..... + . .+ -+++--.|+++
T Consensus 84 ~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~v 163 (438)
T COG1541 84 DFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATV 163 (438)
T ss_pred cccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEE
Confidence 33455567777889999999999999999987766554444 346777887744321 1 1 11 12333367666
Q ss_pred EEecCccccCchHHHhhhhccccCC
Q psy4550 226 YVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 226 v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+-.+. -+-+.-+++++.+++|.
T Consensus 164 ip~~~---g~~~~~~~l~~df~~tv 185 (438)
T COG1541 164 IPISG---GNTERQLELMKDFKPTV 185 (438)
T ss_pred EccCC---ccHHHHHHHHHhcCCcE
Confidence 66654 57788888888888874
No 131
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=93.87 E-value=0.62 Score=39.74 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=64.0
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH--HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL--EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+|..++......++..+...|+++||++........ ......++.+..|+..+++++.. .+.+...++..++++++.
T Consensus 95 ~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~ 173 (422)
T TIGR02155 95 YTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIMV 173 (422)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEEE
Confidence 788888777777778888889999999887665432 22334667888999999887654 577889999999999998
Q ss_pred ccchhh
Q psy4550 118 KGEYMD 123 (251)
Q Consensus 118 ~~~~~~ 123 (251)
.+....
T Consensus 174 ~Ps~l~ 179 (422)
T TIGR02155 174 TPSYML 179 (422)
T ss_pred cHHHHH
Confidence 876543
No 132
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=93.75 E-value=0.78 Score=39.55 Aligned_cols=80 Identities=10% Similarity=0.192 Sum_probs=60.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|..++...+..++..+...|+++||++.+..+.+.. .....+++...|+.++|... ......++++.++..++
T Consensus 105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~ 181 (445)
T TIGR03335 105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIV 181 (445)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEE
Confidence 38999999988888888888999999999998876543 23456788889998876643 23456778888988887
Q ss_pred Eccch
Q psy4550 117 TKGEY 121 (251)
Q Consensus 117 ~~~~~ 121 (251)
.....
T Consensus 182 ~~ps~ 186 (445)
T TIGR03335 182 ASVFK 186 (445)
T ss_pred ECHHH
Confidence 75543
No 133
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=91.30 E-value=2 Score=33.39 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=44.2
Q ss_pred HhcCCCCCCEEEEEccCC-H-HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 57 INQGCIVGSTVGVLMERC-L-EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 57 ~~~g~~~g~~V~l~~~~~-~-~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
...|+.++|++. .+|=. . .....+++.+..|+..+.+ ++++++++.+.+++.+++
T Consensus 171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERVT 227 (227)
T ss_pred hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcCC
Confidence 566899999999 88833 2 3345789999999998877 689999999999988763
No 134
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=89.36 E-value=0.94 Score=38.84 Aligned_cols=86 Identities=9% Similarity=-0.111 Sum_probs=46.3
Q ss_pred eEEEEeccCCCCCCceEEeccHHHHHHHH-HHHHh--CCCCCCChhhhhHHHHHHHHHhhhcCccEEEecCccccCchHH
Q psy4550 163 IAYIVYSSGTTGKPKGIVCPHRGAVHAYK-WRHRA--YPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239 (251)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 239 (251)
-..+..||||||.|-.+..+......... ..... .++..++++......-..++..+... .+-+..-+..-+.+.+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~~~~~~-~~~~~~~~l~~~~~~~ 179 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQSVNNR-WISLDFFDLLAPFQAH 179 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHHHHHhc-cceeeecCCCcCHHHH
Confidence 34667899999999999999987643322 22222 24555555543311000111222221 1102222222467888
Q ss_pred HhhhhccccC
Q psy4550 240 TSGWVRLPLN 249 (251)
Q Consensus 240 ~~~i~~~~vt 249 (251)
++.|+++++|
T Consensus 180 l~~L~~~~P~ 189 (430)
T TIGR02304 180 IKRLNQRKPS 189 (430)
T ss_pred HHHHHHhCCC
Confidence 9999998876
No 135
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=88.32 E-value=5.1 Score=34.85 Aligned_cols=83 Identities=10% Similarity=-0.066 Sum_probs=62.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|++.+......... ..+++++|++....+-...+ +...++++..|+..+..+.. +.+.+...++..+++.+++
T Consensus 186 ~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~ 261 (521)
T PRK06187 186 VLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFFA 261 (521)
T ss_pred EeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEEc
Confidence 4789888876665544 45788999998887754322 34455588889888877664 8999999999999999999
Q ss_pred ccchhhhh
Q psy4550 118 KGEYMDRL 125 (251)
Q Consensus 118 ~~~~~~~~ 125 (251)
.+.....+
T Consensus 262 ~p~~~~~l 269 (521)
T PRK06187 262 VPTIWQML 269 (521)
T ss_pred hHHHHHHH
Confidence 87765544
No 136
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=87.84 E-value=4.5 Score=35.23 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=62.2
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH--HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL--EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+..+.. ..+++++|++....+-.. .+...+++++..|+.+++. +..+++.+...+++.++++++
T Consensus 185 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~ 260 (513)
T PRK07656 185 MLTHRQLLSNAADWAE---YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-PVFDPDEVFRLIETERITVLP 260 (513)
T ss_pred EEecHHHHHHHHHHHH---hhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-CcCCHHHHHHHHHHhCCeEEe
Confidence 4899988766655433 347889999988777443 2345578889999988765 567899999999999999998
Q ss_pred Eccchhhhh
Q psy4550 117 TKGEYMDRL 125 (251)
Q Consensus 117 ~~~~~~~~~ 125 (251)
..+.....+
T Consensus 261 ~~p~~~~~l 269 (513)
T PRK07656 261 GPPTMYNSL 269 (513)
T ss_pred chHHHHHHH
Confidence 877665544
No 137
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=87.43 E-value=2.1 Score=35.87 Aligned_cols=92 Identities=21% Similarity=0.142 Sum_probs=48.0
Q ss_pred CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh---C-CCCCCChh-h--hhH-------HH-HHHHHHhhhc
Q psy4550 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA---Y-PYDEDDRE-A--CNV-------FF-VWEMLRPLTQ 221 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~-~~~~~~~~-~--~~~-------~~-~~~~~~~l~~ 221 (251)
...++++..++-||||||.|--+.+.+..+.......... + +....... + .+. .. ....+..+..
T Consensus 85 S~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~ 164 (365)
T PF04443_consen 85 SVPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFF 164 (365)
T ss_pred ecChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhccc
Confidence 3445677788999999999866666665555444333322 2 22221111 1 111 11 1223333445
Q ss_pred CccEEEecCccccCchHHHhhhhccccCC
Q psy4550 222 GIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 222 G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+....+-.. .++...++..+.+.+-.|
T Consensus 165 ~~~~~l~~~--~ld~~~~~~~L~~~~~~~ 191 (365)
T PF04443_consen 165 GSRFALDND--ELDLEGLIEALFRAEHSG 191 (365)
T ss_pred CceeeecCC--ccCHHHHHHHHHHHHhCC
Confidence 555444222 467788887777654443
No 138
>PRK08315 AMP-binding domain protein; Validated
Probab=85.19 E-value=8.6 Score=33.98 Aligned_cols=81 Identities=6% Similarity=0.094 Sum_probs=59.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|+..+...+..+.. ..+++++|++....+-. ..++..+++.+..|+..+......++..+...+++.++++++
T Consensus 218 ~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~ 294 (559)
T PRK08315 218 TLTHRNILNNGYFIGE---AMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALY 294 (559)
T ss_pred EeeHHHHHHHHHHHHH---hcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEe
Confidence 4788888766554433 34788999998777742 344556788888898877555667888899999999999988
Q ss_pred Eccchh
Q psy4550 117 TKGEYM 122 (251)
Q Consensus 117 ~~~~~~ 122 (251)
..+...
T Consensus 295 ~~P~~~ 300 (559)
T PRK08315 295 GVPTMF 300 (559)
T ss_pred cchHHH
Confidence 766543
No 139
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=84.85 E-value=0.4 Score=42.28 Aligned_cols=32 Identities=25% Similarity=0.178 Sum_probs=25.7
Q ss_pred CCCCCCeEEEEeccCCCCC-CceEEeccHHHHH
Q psy4550 157 QVGLDDIAYIVYSSGTTGK-PKGIVCPHRGAVH 188 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~-pK~v~~s~~~l~~ 188 (251)
...++.+.+...||||||. ||-+.+|...+..
T Consensus 76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 4556678899999999999 9999999998755
No 140
>PLN02565 cysteine synthase
Probab=84.42 E-value=16 Score=30.04 Aligned_cols=91 Identities=12% Similarity=-0.112 Sum_probs=62.9
Q ss_pred ceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHH
Q psy4550 29 KIAVVDHDGRSITFKQLDEWTDIVGTYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVL 107 (251)
Q Consensus 29 ~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l 107 (251)
++.+.. +...-|.+-=++-+..+-..+.+.|. .+|....+....+---..+.+++...|..++.+-|...+......+
T Consensus 31 ~i~~K~-E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i 109 (322)
T PLN02565 31 RIAAKL-EMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIIL 109 (322)
T ss_pred eEEEEe-cccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHH
Confidence 455542 33333333233444445555566664 7886655666666666777888899999888888888888999999
Q ss_pred hhcCccEEEEccc
Q psy4550 108 DDAKPSIVITKGE 120 (251)
Q Consensus 108 ~~~~~~~vi~~~~ 120 (251)
+..+++++++++.
T Consensus 110 ~~~GA~V~~~~~~ 122 (322)
T PLN02565 110 LAFGAELVLTDPA 122 (322)
T ss_pred HHcCCEEEEeCCC
Confidence 9999999999853
No 141
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=84.32 E-value=5.2 Score=33.98 Aligned_cols=82 Identities=9% Similarity=-0.033 Sum_probs=60.2
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|++.+...+..+... .+++++|++....+-. ...+..+++.+..|+..+..++. ..+.+.+++.+++++..
T Consensus 130 ~~s~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~~ 203 (436)
T TIGR01923 130 PHTFRNHYASAVGSKEN---LGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHISL 203 (436)
T ss_pred EEehHHHHHHHHHHHhh---cCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEEe
Confidence 58999988777666554 3788999998777643 22234567888899888877543 38888999999999998
Q ss_pred ccchhhhhh
Q psy4550 118 KGEYMDRLE 126 (251)
Q Consensus 118 ~~~~~~~~~ 126 (251)
.+.....+.
T Consensus 204 ~P~~l~~l~ 212 (436)
T TIGR01923 204 VPTQLNRLL 212 (436)
T ss_pred HHHHHHHHH
Confidence 776654443
No 142
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=83.82 E-value=18 Score=31.95 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=65.7
Q ss_pred CCCceEEEec-CC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVDH-DG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~~-~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~ 95 (251)
.++.++++.. .| -.+|++.+...+.... ...++.++|++...+|-. ..+...++..+..|+..+...
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~ 257 (539)
T PRK06334 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL---KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAY 257 (539)
T ss_pred CcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEec
Confidence 4566776532 22 3589988876554433 345678899988877632 222234566777888777655
Q ss_pred CCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 96 TSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
....++.+...++..+++++...+.....+
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 287 (539)
T PRK06334 258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDYI 287 (539)
T ss_pred CCCCHHHHHHHHHHhCCcEEEecHHHHHHH
Confidence 557889999999999999999887765443
No 143
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=83.81 E-value=13 Score=32.39 Aligned_cols=84 Identities=10% Similarity=0.019 Sum_probs=63.4
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|+..+...+..+... .++++||++...++-+.. .+..+++++..|+..+.. +...++.+...++..+++++..
T Consensus 180 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~ 255 (515)
T TIGR03098 180 VLSHRNLVAGAQSVATY---LENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLH-DYLLPRDVLKALEKHGITGLAA 255 (515)
T ss_pred EEecHHHHHHHHHHHHH---hCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEc-CCCCHHHHHHHHHHcCCceEec
Confidence 48999888776665543 367889999888885432 345677888899988865 4568899999999999999999
Q ss_pred ccchhhhhh
Q psy4550 118 KGEYMDRLE 126 (251)
Q Consensus 118 ~~~~~~~~~ 126 (251)
.+.....+.
T Consensus 256 ~P~~~~~l~ 264 (515)
T TIGR03098 256 VPPLWAQLA 264 (515)
T ss_pred ChHHHHHHH
Confidence 887655544
No 144
>PLN03051 acyl-activating enzyme; Provisional
Probab=83.78 E-value=11 Score=33.03 Aligned_cols=83 Identities=7% Similarity=-0.146 Sum_probs=57.2
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|++.+...+... ....++.++|++....+-.- .....+++.+..|+..+..+.....+.+...+++.+++++..
T Consensus 138 ~~sh~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~ 214 (499)
T PLN03051 138 PWTHLSPLRCASDG---WAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGL 214 (499)
T ss_pred EEccchHHHHHHHH---HHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEe
Confidence 47887765543322 23457888998876666321 123456778889998887765456788999999999999998
Q ss_pred ccchhhh
Q psy4550 118 KGEYMDR 124 (251)
Q Consensus 118 ~~~~~~~ 124 (251)
.+.....
T Consensus 215 vP~~~~~ 221 (499)
T PLN03051 215 VPSIVKA 221 (499)
T ss_pred CHHHHHH
Confidence 7765543
No 145
>KOG1177|consensus
Probab=83.65 E-value=24 Score=30.80 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=63.0
Q ss_pred CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc--CCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME--RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 38 ~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~--~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
-++|.-++...+...+..+ |+...+++++-.| .+.-.++..+|++.-|+..|.-+|...+...-..+.+.+++.+
T Consensus 252 atLsH~~~~Nna~~vg~r~---g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l 328 (596)
T KOG1177|consen 252 ATLSHYNFLNNARAVGARA---GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTL 328 (596)
T ss_pred eeeehhhhhhhHHHHHHHh---CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEE
Confidence 4799999999998876644 4444445444333 2233466788999999999998999999999999999999999
Q ss_pred EEccchhh
Q psy4550 116 ITKGEYMD 123 (251)
Q Consensus 116 i~~~~~~~ 123 (251)
+..+...-
T Consensus 329 ~gtPtM~~ 336 (596)
T KOG1177|consen 329 YGTPTMFV 336 (596)
T ss_pred ecChHHHH
Confidence 98876543
No 146
>PRK12583 acyl-CoA synthetase; Provisional
Probab=83.04 E-value=13 Score=32.74 Aligned_cols=81 Identities=7% Similarity=0.133 Sum_probs=58.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+..+... .+++++|++....+- ....+..+++++..|+.++.......+..+.+.+++.+++.++
T Consensus 220 ~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~ 296 (558)
T PRK12583 220 TLSHHNILNNGYFVAES---LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALY 296 (558)
T ss_pred EeeHHHHHHHHHHHHHH---hCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEe
Confidence 58898886665554433 478899998777663 2344566778888888777444556788889999999999998
Q ss_pred Eccchh
Q psy4550 117 TKGEYM 122 (251)
Q Consensus 117 ~~~~~~ 122 (251)
..+...
T Consensus 297 ~~P~~~ 302 (558)
T PRK12583 297 GVPTMF 302 (558)
T ss_pred ccHHHH
Confidence 877653
No 147
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=81.13 E-value=13 Score=31.24 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=69.0
Q ss_pred CCCceEEEec-C---C----CeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeC
Q psy4550 26 TPDKIAVVDH-D---G----RSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPL 94 (251)
Q Consensus 26 ~~~~~a~~~~-~---~----~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i 94 (251)
.+++++++.. . | -.+|++.+...+..+. +... +++ |++..++|-+ ..++..+++.+..|+..+..
T Consensus 153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (417)
T PF00501_consen 153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLP 228 (417)
T ss_dssp TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEE
T ss_pred CccceeEeeccccccccccccccccccccccccccc--cccccccC--ceEEeecccccccccccccccccccccccccc
Confidence 5688888742 2 2 2489999999988876 4332 333 6777776644 33337889999999999888
Q ss_pred CCCCC--HHHHHHHHhhcCccEEEEccchhhhhh
Q psy4550 95 ETSYP--PALLESVLDDAKPSIVITKGEYMDRLE 126 (251)
Q Consensus 95 ~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~ 126 (251)
++... ++.+...+++.+++.+++.+...+.+.
T Consensus 229 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~ 262 (417)
T PF00501_consen 229 SPFDLFDPESLLELISRYKPTILFAVPSMLEALL 262 (417)
T ss_dssp SSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHH
T ss_pred ccccccccccchhccccccccccccccccccccc
Confidence 76543 567889999999999999887665543
No 148
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=80.72 E-value=2 Score=38.34 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=24.8
Q ss_pred CCCeEEEEeccCCCC-CCceEEeccHHHHH
Q psy4550 160 LDDIAYIVYSSGTTG-KPKGIVCPHRGAVH 188 (251)
Q Consensus 160 ~~~~~~i~~TSGtTG-~pK~v~~s~~~l~~ 188 (251)
++.+.+..-|||||| ++|.+.+|...+-.
T Consensus 88 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 117 (606)
T PLN02247 88 AQPITELLTSSGTSGGQPKLMPSTAEELDR 117 (606)
T ss_pred CCCcceeeccCCCCCCceeEeeccHHHHHH
Confidence 567788899999995 89999999987654
No 149
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=80.53 E-value=21 Score=29.08 Aligned_cols=71 Identities=10% Similarity=-0.046 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 48 WTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 48 ~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
-+..+.....+.| +++|+ ..|=..++---+.+.+.|...|..++.+=|...+.+...+|+..++.+++++.
T Consensus 45 ~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 45 IALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred HHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 3344444455555 89999 44555566666778888888999888888888888899999999999999987
No 150
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=80.34 E-value=17 Score=30.40 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=63.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCC--HHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYP--PALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~--~~~l~~~l~~~~~~~v 115 (251)
.+|++.+...+..+.. ..+++++|++....+-... .+..+++.+..|+..+..+.... ++.+..+++..+++.+
T Consensus 139 ~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l 215 (408)
T TIGR01733 139 VVTHRSLVNLLAWLAR---RYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVL 215 (408)
T ss_pred EeccHHHHHHHHHHHH---hcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEE
Confidence 4788888877766654 4467789999887774433 45667888888888877766554 7889999999999999
Q ss_pred EEccchhhhhh
Q psy4550 116 ITKGEYMDRLE 126 (251)
Q Consensus 116 i~~~~~~~~~~ 126 (251)
+..+...+.+.
T Consensus 216 ~~~p~~~~~l~ 226 (408)
T TIGR01733 216 NLTPSLLALLA 226 (408)
T ss_pred EeCHHHHHHHH
Confidence 99887766554
No 151
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=80.22 E-value=16 Score=31.53 Aligned_cols=83 Identities=11% Similarity=-0.011 Sum_probs=59.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|+..+...+.... ...+++++|++...++-.- ..+..+++.+..|+..+..+ ..++.++...+++.+++++..
T Consensus 160 ~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~ 235 (483)
T PRK03640 160 IQTYGNHWWSAVGSA---LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVE-KFDAEKINKLLQTGGVTIISV 235 (483)
T ss_pred EEecHHHHHHHHHHH---HhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHhCCcEEEe
Confidence 478887765543332 3358899999988887422 22334567777888877664 578999999999999999999
Q ss_pred ccchhhhh
Q psy4550 118 KGEYMDRL 125 (251)
Q Consensus 118 ~~~~~~~~ 125 (251)
.+.....+
T Consensus 236 ~P~~~~~l 243 (483)
T PRK03640 236 VSTMLQRL 243 (483)
T ss_pred HHHHHHHH
Confidence 87765544
No 152
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=79.95 E-value=1.4 Score=39.39 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCCCCeEEEEeccCCC-CCCceEEeccHHHH
Q psy4550 158 VGLDDIAYIVYSSGTT-GKPKGIVCPHRGAV 187 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~ 187 (251)
..++.+.+..-||||| |++|.+.+|...+-
T Consensus 97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~ 127 (597)
T PLN02249 97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID 127 (597)
T ss_pred eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence 4467778889999999 89999999997765
No 153
>PRK06164 acyl-CoA synthetase; Validated
Probab=79.24 E-value=33 Score=30.21 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=67.2
Q ss_pred CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCC
Q psy4550 27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETS 97 (251)
Q Consensus 27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~ 97 (251)
++.++++. ..| -.+|...+...+..++..+ ++.+++++...+|-+ .-.+..+++.+..|+..+.. +.
T Consensus 180 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~~ 255 (540)
T PRK06164 180 PDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY---GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCE-PV 255 (540)
T ss_pred CCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc---CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEec-CC
Confidence 45666654 222 2478888877666555444 677899998888743 33345677888888887765 45
Q ss_pred CCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 98 YPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 98 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.....+...+++.+++.++..+.....+
T Consensus 256 ~~~~~~~~~l~~~~~t~~~~~p~~l~~l 283 (540)
T PRK06164 256 FDAARTARALRRHRVTHTFGNDEMLRRI 283 (540)
T ss_pred CCHHHHHHHHHHhCCeeecCCHHHHHHH
Confidence 6788899999999999999877765543
No 154
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=78.73 E-value=27 Score=30.99 Aligned_cols=96 Identities=16% Similarity=0.094 Sum_probs=65.4
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~ 96 (251)
.++.++++- ..| -.+|.+.+...+.... ...++.++|++....|-. ...+...++.+..|+..+.. +
T Consensus 170 ~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~-~ 245 (563)
T PLN02860 170 APDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLL-P 245 (563)
T ss_pred CCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHH---hhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEec-C
Confidence 346666653 222 2578888765544432 345788999888877733 22334567788888877755 5
Q ss_pred CCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 97 SYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
...+..+...+++.+++++...+.....+
T Consensus 246 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 274 (563)
T PLN02860 246 KFDAKAALQAIKQHNVTSMITVPAMMADL 274 (563)
T ss_pred CCCHHHHHHHHHHhCCeeEEeChHHHHHH
Confidence 67889999999999999999887765443
No 155
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=77.98 E-value=19 Score=32.00 Aligned_cols=84 Identities=10% Similarity=-0.049 Sum_probs=60.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+... ....+++++|++....+-... ....+++.+..|+..+......+++.+...+++.+++++.
T Consensus 224 ~~s~~~l~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 300 (570)
T PRK04319 224 LHVHNAMLQHYQTG---KYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWY 300 (570)
T ss_pred EEecHHHHHHHHHH---HHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEE
Confidence 47888876544333 334578889987665553322 2445778888998887776678899999999999999999
Q ss_pred Eccchhhhh
Q psy4550 117 TKGEYMDRL 125 (251)
Q Consensus 117 ~~~~~~~~~ 125 (251)
..+.....+
T Consensus 301 ~~P~~~~~l 309 (570)
T PRK04319 301 TAPTAIRML 309 (570)
T ss_pred eCHHHHHHH
Confidence 887766554
No 156
>PRK07638 acyl-CoA synthetase; Validated
Probab=77.85 E-value=25 Score=30.49 Aligned_cols=84 Identities=11% Similarity=-0.021 Sum_probs=60.6
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|.+.+...+...+ ...+++++|++....+-... ++...+..+..|+..+.. +..++.++...++..+++++..
T Consensus 162 ~~s~~~~~~~~~~~~---~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~~~~~t~~~~ 237 (487)
T PRK07638 162 LRAQQSWLHSFDCNV---HDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLM-RKFIPNQVLDKLETENISVMYT 237 (487)
T ss_pred EEecHHHHHHHHHHH---HhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEc-CCCCHHHHHHHHHHcCCeEEEe
Confidence 478887766554333 34578889998877664332 345566677788887755 5678899999999999999999
Q ss_pred ccchhhhhh
Q psy4550 118 KGEYMDRLE 126 (251)
Q Consensus 118 ~~~~~~~~~ 126 (251)
.+.....+.
T Consensus 238 ~P~~~~~l~ 246 (487)
T PRK07638 238 VPTMLESLY 246 (487)
T ss_pred CcHHHHHHH
Confidence 887766554
No 157
>PLN03013 cysteine synthase
Probab=77.85 E-value=25 Score=30.29 Aligned_cols=73 Identities=12% Similarity=-0.094 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 48 WTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 48 ~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
-+..+.....+.| +++|....+....+---+.+.++|...|..++.+-|...+++....++..+++++++++.
T Consensus 157 ~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 157 IGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred HHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCC
Confidence 3444444455555 578866556666666677778888889988877777778888899999999999999754
No 158
>PRK08316 acyl-CoA synthetase; Validated
Probab=77.47 E-value=23 Score=30.86 Aligned_cols=82 Identities=7% Similarity=-0.002 Sum_probs=59.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH--HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL--EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+. ......+++++|++...++-.. .+...+++++..|+..++.+ ..+++.+...+++.++++++
T Consensus 190 ~~s~~~l~~~~~---~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 265 (523)
T PRK08316 190 MLTHRALIAEYV---SCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD-APDPELILRTIEAERITSFF 265 (523)
T ss_pred EEecHHHHHHHH---HHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEec-CCCHHHHHHHHHHhCCeEEE
Confidence 488888765543 3445567899999988777442 23345667788899888764 35789999999999999999
Q ss_pred Eccchhhh
Q psy4550 117 TKGEYMDR 124 (251)
Q Consensus 117 ~~~~~~~~ 124 (251)
+.+.....
T Consensus 266 ~~P~~~~~ 273 (523)
T PRK08316 266 APPTVWIS 273 (523)
T ss_pred eCHHHHHH
Confidence 87766443
No 159
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=77.02 E-value=9.6 Score=26.99 Aligned_cols=43 Identities=7% Similarity=-0.079 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccC---CHHHHHHHHHHHHHCCeEe
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMER---CLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~---~~~~~~~~~a~~~~G~~~v 92 (251)
..+...|.+.|+.+++.|.+++.. ......++|.+..+|..-+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v 126 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDV 126 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCe
Confidence 467888999999999999999975 5666777888888886533
No 160
>KOG1179|consensus
Probab=76.78 E-value=13 Score=32.87 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=61.5
Q ss_pred eeHHHHHHHHHHHHH-HHHhcCCCCCCEEEEEcc--CCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 40 ITFKQLDEWTDIVGT-YLINQGCIVGSTVGVLME--RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~-~L~~~g~~~g~~V~l~~~--~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
+|+..+.. .+. .....|+++.|+|-+.+| .+.-.++.+-+|+..|+.+| +...+|+..+..-...++++++-
T Consensus 262 ith~r~~~----~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~V-lrkKFSAS~FW~DC~k~~~Tv~Q 336 (649)
T KOG1179|consen 262 ITHLRYLQ----GAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVV-LRKKFSASNFWDDCRKYNVTVIQ 336 (649)
T ss_pred HHHHHHHH----HHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEE-EecccchhhhHHHHHHhCCeeee
Confidence 66655544 444 345569999999999999 67788999999999999988 78899999999999999999887
Q ss_pred Eccc
Q psy4550 117 TKGE 120 (251)
Q Consensus 117 ~~~~ 120 (251)
+-.+
T Consensus 337 YIGE 340 (649)
T KOG1179|consen 337 YIGE 340 (649)
T ss_pred hHHH
Confidence 7444
No 161
>PRK11761 cysM cysteine synthase B; Provisional
Probab=76.48 E-value=30 Score=28.11 Aligned_cols=88 Identities=7% Similarity=-0.113 Sum_probs=58.6
Q ss_pred ceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHH
Q psy4550 29 KIAVVDHD-GRSITFKQLDEWTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESV 106 (251)
Q Consensus 29 ~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~ 106 (251)
++.+.... +-+=|+++ +.+..+...+.+.| +.+|+.|.. ...+---..+.++|...|..+..+-|...+......
T Consensus 28 ~i~~K~E~~nptGS~K~--R~a~~~~~~a~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~ 104 (296)
T PRK11761 28 TILAKLEGNNPAGSVKD--RPALSMIVQAEKRGEIKPGDTLIE-ATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAA 104 (296)
T ss_pred EEEEEEcccCCCCCchh--HHHHHHHHHHHHcCCCCCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 56665322 22233433 44444555555566 467776544 455555667777888899888777777777788889
Q ss_pred HhhcCccEEEEcc
Q psy4550 107 LDDAKPSIVITKG 119 (251)
Q Consensus 107 l~~~~~~~vi~~~ 119 (251)
++..++++++++.
T Consensus 105 ~~~~GA~v~~~~~ 117 (296)
T PRK11761 105 MRAYGAELILVPK 117 (296)
T ss_pred HHHcCCEEEEeCC
Confidence 9999999999986
No 162
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=76.10 E-value=9.5 Score=31.88 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC-----CCCHHHHHHHHhhcCccEEEE
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET-----SYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~l~~~l~~~~~~~vi~ 117 (251)
..+-..|..+|+++||.|.+- ..-+....-|+..+|+.++.++- ..+++.+.+.++.-. +.|+.
T Consensus 51 ~Al~~al~~l~~~~gdeVi~p---~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t-~ai~~ 119 (363)
T PF01041_consen 51 SALHLALRALGLGPGDEVIVP---AYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKT-KAILV 119 (363)
T ss_dssp HHHHHHHHHTTGGTTSEEEEE---SSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTE-EEEEE
T ss_pred HHHHHHHHhcCCCcCceEecC---CCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCc-cEEEE
Confidence 344455777999999998775 34567777888999998888864 346788888876443 55554
No 163
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=75.43 E-value=42 Score=27.18 Aligned_cols=91 Identities=14% Similarity=-0.007 Sum_probs=58.5
Q ss_pred CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHH
Q psy4550 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESV 106 (251)
Q Consensus 28 ~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~ 106 (251)
.++.+.. ++..-|.+-=.+.+..+.....+.| +.+|++| +....+---..+.+++...|..+..+-|...++.....
T Consensus 21 ~~i~~K~-E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~ 98 (298)
T TIGR01139 21 ANVFVKL-EGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTI-VEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKL 98 (298)
T ss_pred ceEEEEE-cccCCCCcchHHHHHHHHHHHHHcCCCCCCCEE-EEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHH
Confidence 3566653 3333343333333333444455556 4677776 45555555566677888899887777776666667888
Q ss_pred HhhcCccEEEEccc
Q psy4550 107 LDDAKPSIVITKGE 120 (251)
Q Consensus 107 l~~~~~~~vi~~~~ 120 (251)
++..++++++++..
T Consensus 99 ~~~~GA~v~~~~~~ 112 (298)
T TIGR01139 99 LKAYGAELVLTPGA 112 (298)
T ss_pred HHHcCCEEEEECCC
Confidence 99999999999765
No 164
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=75.01 E-value=2.7 Score=37.57 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=26.0
Q ss_pred CCCCCeEEEEeccCCCC-CCceEEeccHHHHH
Q psy4550 158 VGLDDIAYIVYSSGTTG-KPKGIVCPHRGAVH 188 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtTG-~pK~v~~s~~~l~~ 188 (251)
..++.+.+..-|||||| ++|.+.+|+..+-.
T Consensus 98 L~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 129 (612)
T PLN02620 98 LCSKPISEFLTSSGTSGGERKLMPTIEEELGR 129 (612)
T ss_pred cCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence 44677778889999997 69999999997765
No 165
>PLN02736 long-chain acyl-CoA synthetase
Probab=74.89 E-value=31 Score=31.35 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=64.0
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~ 96 (251)
.|+.+|++- ..| -.+|++.+...+..+.. ..++.++|++...+|-.- .-...+++++..|+..+...
T Consensus 219 ~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~- 294 (651)
T PLN02736 219 KPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL---STKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQ- 294 (651)
T ss_pred CccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh---ccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 356677653 222 35899998877665543 346788999888877432 12234566777888776544
Q ss_pred CCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 97 SYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.....+...++..++++++..+...+.+
T Consensus 295 -~~~~~~~~~i~~~~~t~~~~vP~~~~~l 322 (651)
T PLN02736 295 -GDNLKLMDDLAALRPTIFCSVPRLYNRI 322 (651)
T ss_pred -CCHHHHHHHHHHhCCcEEecchHHHHHH
Confidence 3667888999999999999887665443
No 166
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=73.54 E-value=16 Score=30.78 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=38.0
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-----CCHHHHHHHHhhcCccEEEE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~ 117 (251)
+...++++||.|.+-.+ .+.....++...|+.++.++.. .+.+++...++. +.++|+.
T Consensus 63 l~al~~~pGd~Viv~~~---t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~-~tk~Iip 125 (376)
T TIGR02379 63 ALLLDIQPGDEVIMPSY---TFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITH-RTKAIVP 125 (376)
T ss_pred HHHcCCCCcCEEEECCC---CcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEEE
Confidence 44557899999877554 4445556667889877776542 356777776653 5666654
No 167
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=73.02 E-value=55 Score=28.80 Aligned_cols=94 Identities=13% Similarity=0.000 Sum_probs=64.7
Q ss_pred CCCceEEEec-CC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH--HHHHHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVDH-DG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL--EWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~~-~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~i~ 95 (251)
.++.+|++-. .| -.+|++.+...+..... ..++.++|++....+-.- .+...+++.+..|+..+..+
T Consensus 188 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~ 264 (546)
T PRK08314 188 GPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVL---WSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMP 264 (546)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH---hhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecC
Confidence 3466776532 22 24889888776654433 345778998877766432 23456678888999888775
Q ss_pred CCCCHHHHHHHHhhcCccEEEEccchhh
Q psy4550 96 TSYPPALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
..+++.+.+.++..+++++...+....
T Consensus 265 -~~~~~~~~~~i~~~~~t~~~~~p~~~~ 291 (546)
T PRK08314 265 -RWDREAAARLIERYRVTHWTNIPTMVV 291 (546)
T ss_pred -CCCHHHHHHHHHHhcCceecccHHHHH
Confidence 467888999999999999888776543
No 168
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=72.99 E-value=52 Score=28.66 Aligned_cols=83 Identities=10% Similarity=-0.037 Sum_probs=59.2
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+.... ....+++++|++....+-... +...+++.+..|+..+..++..+...+...++..++.+++
T Consensus 180 ~~s~~~~~~~~~~~~--~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~ 257 (508)
T TIGR02262 180 VHTHSNPYWTAELYA--RNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFY 257 (508)
T ss_pred EEechhHHHHHHHHh--HHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEe
Confidence 578888876554322 233488999988777664433 2334566677888887777667888999999999999999
Q ss_pred Eccchhh
Q psy4550 117 TKGEYMD 123 (251)
Q Consensus 117 ~~~~~~~ 123 (251)
..+....
T Consensus 258 ~~P~~~~ 264 (508)
T TIGR02262 258 GVPTLYA 264 (508)
T ss_pred cchHHHH
Confidence 8876544
No 169
>PLN02614 long-chain acyl-CoA synthetase
Probab=72.87 E-value=42 Score=30.76 Aligned_cols=96 Identities=16% Similarity=0.086 Sum_probs=64.4
Q ss_pred CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeC
Q psy4550 27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLIN--QGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPL 94 (251)
Q Consensus 27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~--~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i 94 (251)
++.+|++- ..| -.+|.+.+...+..+...+.. .++.++|++..++|=+ .+.. ..+.++..|+..+..
T Consensus 222 ~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~-~~~~~l~~G~~v~~~ 300 (666)
T PLN02614 222 KSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRV-IEECFIQHGAAIGFW 300 (666)
T ss_pred CCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHH-HHHHHHHhCCEEEEe
Confidence 46666653 222 358999888776655444422 3577899988888743 2332 345556778877654
Q ss_pred CCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 95 ETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
. .++..+...++..++++++.-+...+.+
T Consensus 301 ~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l 329 (666)
T PLN02614 301 R--GDVKLLIEDLGELKPTIFCAVPRVLDRV 329 (666)
T ss_pred C--CCHHHHHHHHHHhCCeEEEecHHHHHHH
Confidence 3 4778899999999999999887765544
No 170
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=72.72 E-value=38 Score=30.72 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=70.5
Q ss_pred HhCCCceEEEe-cC-------CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHH-HHHHHHCCeEeeC
Q psy4550 24 KRTPDKIAVVD-HD-------GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY-IAIHKAGGGYLPL 94 (251)
Q Consensus 24 ~~~~~~~a~~~-~~-------~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~-~a~~~~G~~~v~i 94 (251)
...|+.+|.+- .. |-.+||+-+...+..+...+. -+++||++.-++|-+--+=-++ .++...|.+.+..
T Consensus 187 ~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~--~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~ 264 (613)
T COG1022 187 PPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP--PIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLF 264 (613)
T ss_pred CCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC--CCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEe
Confidence 34567777652 22 345999999999988877665 4789999999999553332232 5555555554433
Q ss_pred CCCCCHHHHHHHHhhcCccEEEEccchhhhhhc
Q psy4550 95 ETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127 (251)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (251)
..+...+..-+...+|++++.-+...+.+.+
T Consensus 265 --~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~ 295 (613)
T COG1022 265 --KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYK 295 (613)
T ss_pred --cCCHHHHHHHHHHhCCeEEeechHHHHHHHH
Confidence 3578889999999999999998887766543
No 171
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=72.51 E-value=7.7 Score=29.27 Aligned_cols=33 Identities=6% Similarity=0.153 Sum_probs=28.2
Q ss_pred CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q psy4550 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70 (251)
Q Consensus 38 ~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~ 70 (251)
.-+||.++.+.+.++|..+++.|.+|.-.|++.
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaia 37 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIA 37 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEc
Confidence 358999999999999999999999986555544
No 172
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=72.20 E-value=44 Score=28.18 Aligned_cols=64 Identities=11% Similarity=-0.055 Sum_probs=49.3
Q ss_pred HHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 56 LINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 56 L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
..+.| ++||....+....+---..+.++|...|..+..+-|...+.+-...++..+++++++++
T Consensus 101 a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~ 165 (368)
T PLN02556 101 AEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDP 165 (368)
T ss_pred HHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 33444 67885555556666666778888899999888887777778888999999999999974
No 173
>PRK06382 threonine dehydratase; Provisional
Probab=71.95 E-value=49 Score=28.27 Aligned_cols=65 Identities=12% Similarity=0.015 Sum_probs=44.4
Q ss_pred HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 55 YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 55 ~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
.+.+.+.++| | +....+=--..+.++|...|..+..+-|...+..-...++..+++++++...+.
T Consensus 66 ~~~~~~~~~g--v-v~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~~~~ 130 (406)
T PRK06382 66 KLSEDELRNG--V-ITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRDYD 130 (406)
T ss_pred hcchhccCCe--E-EEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECCCHH
Confidence 3444444455 2 333434444556788889998777777777777778889999999999887543
No 174
>PLN00011 cysteine synthase
Probab=71.93 E-value=46 Score=27.38 Aligned_cols=90 Identities=12% Similarity=-0.086 Sum_probs=57.6
Q ss_pred ceEEEecCCCeeeHHHHHHHHHHHHHHHHhcC-CCCC-CEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHH
Q psy4550 29 KIAVVDHDGRSITFKQLDEWTDIVGTYLINQG-CIVG-STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESV 106 (251)
Q Consensus 29 ~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g-~~~g-~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~ 106 (251)
++.+.. ++..=|.+-=.+.+..+.....+.| +.+| +.| +....+---..+.+++...|..+..+-|...++.....
T Consensus 33 ~i~~K~-E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~v-v~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~ 110 (323)
T PLN00011 33 RIAAKL-EMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTL-IEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRII 110 (323)
T ss_pred eEEEEe-cccCCccccchHHHHHHHHHHHHcCCCCCCCcEE-EEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHH
Confidence 455553 3222233322333444334444444 6777 555 34555666677778888999987777776666788889
Q ss_pred HhhcCccEEEEccc
Q psy4550 107 LDDAKPSIVITKGE 120 (251)
Q Consensus 107 l~~~~~~~vi~~~~ 120 (251)
++..+++++++++.
T Consensus 111 i~~~GA~V~~~~~~ 124 (323)
T PLN00011 111 LRALGAEVHLTDQS 124 (323)
T ss_pred HHHcCCEEEEECCC
Confidence 99999999998853
No 175
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=71.61 E-value=25 Score=29.68 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC-----CCCHHHHHHHHhhcCccEEEE
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET-----SYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~l~~~l~~~~~~~vi~ 117 (251)
..+--.|+.+++++||-|.+ .+.-|+.+.=++...|+.+|.+|- ..+++.++..+..- .+.|+.
T Consensus 60 ~AL~laL~al~ig~GDeVI~---ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~-tKAIip 128 (374)
T COG0399 60 AALHLALLALAIGPGDEVIV---PSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPR-TKAIIP 128 (374)
T ss_pred HHHHHHHHhcCCCCCCEEEe---cCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccC-CeEEEE
Confidence 44555577778999996543 356788899999999999988864 35788888888764 555554
No 176
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=71.27 E-value=57 Score=29.06 Aligned_cols=84 Identities=8% Similarity=-0.069 Sum_probs=57.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|++.+...+..+. .....++.+++++...+|-.-.+ ....++.+..|...+...+..+++.+...+++.++.+++.
T Consensus 200 ~~s~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~ 278 (576)
T PRK05620 200 VYSHRSLYLQSLSLR-TTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHG 278 (576)
T ss_pred EEEcHHHHHHHHHhh-hhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeee
Confidence 478887765443322 12235788899998887744332 3445677778887776666678899999999999999988
Q ss_pred ccchhh
Q psy4550 118 KGEYMD 123 (251)
Q Consensus 118 ~~~~~~ 123 (251)
.+....
T Consensus 279 ~P~~~~ 284 (576)
T PRK05620 279 VPTLWI 284 (576)
T ss_pred cCHHHH
Confidence 766543
No 177
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=70.70 E-value=21 Score=29.95 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=38.5
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--C---CCHHHHHHHHhhcCccEEEE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--S---YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~---~~~~~l~~~l~~~~~~~vi~ 117 (251)
+...++++||.|.+-.+. +.....++...|+.++.++. . .+.+++.+.++. ++++|+.
T Consensus 63 l~~~~~~~Gd~Viv~~~t---~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~-~tk~i~~ 125 (375)
T PRK11706 63 ALLLDIQPGDEVIMPSYT---FVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITP-KTRAIVP 125 (375)
T ss_pred HHHhCCCCCCEEEECCCC---cHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCC-CCeEEEE
Confidence 344578899998776554 44445567788987777753 2 457788887754 5666664
No 178
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=70.41 E-value=55 Score=26.51 Aligned_cols=90 Identities=10% Similarity=-0.023 Sum_probs=57.3
Q ss_pred CceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH
Q psy4550 28 DKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLES 105 (251)
Q Consensus 28 ~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~ 105 (251)
.++.+...+ +.+-|++. +.+..+...+.+.| +.+|+.| +....+---..+.+++...|..+..+-|...++.-..
T Consensus 22 ~~i~~K~E~~~ptGS~K~--R~a~~~~~~a~~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~ 98 (299)
T TIGR01136 22 ARVLAKLEGRNPSGSVKD--RIALSMIEDAEKRGLLKPGDTI-IEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRK 98 (299)
T ss_pred ceEEEEEcccCCCCCccH--HHHHHHHHHHHHcCCCCCCCEE-EEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 356665322 12233443 33333334445555 4677766 4555555566677788889988777777666677778
Q ss_pred HHhhcCccEEEEccc
Q psy4550 106 VLDDAKPSIVITKGE 120 (251)
Q Consensus 106 ~l~~~~~~~vi~~~~ 120 (251)
.++..++++++++..
T Consensus 99 ~~~~~GA~v~~~~~~ 113 (299)
T TIGR01136 99 LLRAYGAELILTPAE 113 (299)
T ss_pred HHHHcCCEEEEeCCC
Confidence 899999999998764
No 179
>PLN02246 4-coumarate--CoA ligase
Probab=70.15 E-value=60 Score=28.59 Aligned_cols=86 Identities=10% Similarity=-0.037 Sum_probs=59.7
Q ss_pred eeeHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVGTYL-INQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L-~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+|++.+...+....... ...++.++|++....+-.-. +...+++.+..|+.++..+. ...+++...++..+++++
T Consensus 198 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 276 (537)
T PLN02246 198 MLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPK-FEIGALLELIQRHKVTIA 276 (537)
T ss_pred EEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCC-CCHHHHHHHHHHhCceEE
Confidence 478888876655443322 23478889999887764322 23446677888998887754 678889999999999998
Q ss_pred EEccchhhhh
Q psy4550 116 ITKGEYMDRL 125 (251)
Q Consensus 116 i~~~~~~~~~ 125 (251)
...+.....+
T Consensus 277 ~~~p~~~~~l 286 (537)
T PLN02246 277 PFVPPIVLAI 286 (537)
T ss_pred EcchHHHHHH
Confidence 8776654433
No 180
>PRK09274 peptide synthase; Provisional
Probab=69.94 E-value=19 Score=31.76 Aligned_cols=87 Identities=13% Similarity=-0.069 Sum_probs=56.4
Q ss_pred CCCeEEEEeccCCC-CCCceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCc
Q psy4550 160 LDDIAYIVYSSGTT-GKPKGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDE 231 (251)
Q Consensus 160 ~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~ 231 (251)
++.++++....++. +..+-..+|...+...+..++. ..++.++|++...+ -+...+++++..|+..+..+.
T Consensus 20 p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~l~~- 98 (552)
T PRK09274 20 PDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDP- 98 (552)
T ss_pred CCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEEcCC-
Confidence 45566544322221 2233346899988776655444 45788999886543 345567889999999988876
Q ss_pred cccCchHHHhhhhcccc
Q psy4550 232 VIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~v 248 (251)
.+.+.++...+++.++
T Consensus 99 -~~~~~~l~~~l~~~~~ 114 (552)
T PRK09274 99 -GMGIKNLKQCLAEAQP 114 (552)
T ss_pred -CccHHHHHHHHHhcCC
Confidence 3677777777776554
No 181
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=69.85 E-value=43 Score=30.03 Aligned_cols=81 Identities=7% Similarity=0.017 Sum_probs=57.1
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|.+.+...+..+... .+++++|++...+|-.-. +...+++.+..|+..+. .+..+...+...++..+++++.
T Consensus 218 ~~sh~~l~~~~~~~~~~---~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~-~~~~~~~~~~~~i~~~~~t~~~ 293 (600)
T PRK08279 218 VMSHMRWLKAMGGFGGL---LRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLAL-RRKFSASRFWDDVRRYRATAFQ 293 (600)
T ss_pred EEeHHHHHHHHHHHHHh---cCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEE-cCCCCHHHHHHHHHHhcceEEe
Confidence 58999888777665443 578899999888875433 23345556666766664 5567788888899999999888
Q ss_pred Eccchhh
Q psy4550 117 TKGEYMD 123 (251)
Q Consensus 117 ~~~~~~~ 123 (251)
..+....
T Consensus 294 ~~p~l~~ 300 (600)
T PRK08279 294 YIGELCR 300 (600)
T ss_pred ehHHHHH
Confidence 7655543
No 182
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=69.46 E-value=26 Score=31.74 Aligned_cols=85 Identities=14% Similarity=-0.015 Sum_probs=59.6
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCc
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDE 231 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~ 231 (251)
.++.++++.... . ......+|++.|...+..++. ..|+.++|++...+ -+...+++++..|+..+..+.
T Consensus 80 ~p~~~Al~~~~~--~-~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~- 155 (637)
T PRK00174 80 RGDKVAIIWEGD--D-PGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFG- 155 (637)
T ss_pred CCCCeEEEEECC--C-CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCC-
Confidence 467777764321 1 113567899998877655554 45788999886644 345678899999999988886
Q ss_pred cccCchHHHhhhhcccc
Q psy4550 232 VIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~v 248 (251)
.+.+..+.+.++..++
T Consensus 156 -~~~~~~l~~~l~~~~~ 171 (637)
T PRK00174 156 -GFSAEALADRIIDAGA 171 (637)
T ss_pred -CCCHHHHHHHHHhcCC
Confidence 4788888888887665
No 183
>PRK07788 acyl-CoA synthetase; Validated
Probab=68.94 E-value=35 Score=30.15 Aligned_cols=83 Identities=8% Similarity=-0.076 Sum_probs=57.0
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|+..+...+.. .....++++++++....|-.-.+ +..++.++..|+.++.. ...+++++...+++.+++.+..
T Consensus 226 ~~s~~~~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~vt~~~~ 301 (549)
T PRK07788 226 PRPEPSPLAPLAG---LLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLR-RRFDPEATLEDIAKHKATALVV 301 (549)
T ss_pred eccCccHHHHHHH---HHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEEC-CCCCHHHHHHHHHHhCCcEEEE
Confidence 3677766554433 33445788899887776643222 33456677788877755 5678889999999999999998
Q ss_pred ccchhhhh
Q psy4550 118 KGEYMDRL 125 (251)
Q Consensus 118 ~~~~~~~~ 125 (251)
.+.....+
T Consensus 302 ~P~~~~~l 309 (549)
T PRK07788 302 VPVMLSRI 309 (549)
T ss_pred HHHHHHHH
Confidence 87665443
No 184
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=68.68 E-value=62 Score=29.88 Aligned_cols=81 Identities=7% Similarity=0.071 Sum_probs=56.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+..+.. ..++.++|++...+|-. ..+...+++.+..|+..+..+.......+...+++.+++.+.
T Consensus 384 ~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~ 460 (718)
T PRK08043 384 VHSHKSLLANVEQIKT---IADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLF 460 (718)
T ss_pred EEcHHHHHHHHHHHHH---hhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEE
Confidence 5899888776655443 34788999988877742 333455778888898887665444556677778888888887
Q ss_pred Eccchh
Q psy4550 117 TKGEYM 122 (251)
Q Consensus 117 ~~~~~~ 122 (251)
..+...
T Consensus 461 ~~p~~~ 466 (718)
T PRK08043 461 GTSTFL 466 (718)
T ss_pred chHHHH
Confidence 665543
No 185
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=68.47 E-value=85 Score=27.74 Aligned_cols=82 Identities=7% Similarity=0.009 Sum_probs=59.4
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|+..+...+.... ...++++++++....+-.-. ++..+++.+..|+.++.. +....+.+...++..++..++
T Consensus 216 ~~s~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~l~~~~vt~~~ 291 (547)
T PRK13295 216 MHTANTLMANIVPYA---ERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQ-DIWDPARAAELIRTEGVTFTM 291 (547)
T ss_pred EeccHHHHHHHHHHH---HHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeC-CCCCHHHHHHHHHHcCCcEEE
Confidence 478888776655533 34578889998888775422 345567778889887765 456789999999999999988
Q ss_pred Eccchhhh
Q psy4550 117 TKGEYMDR 124 (251)
Q Consensus 117 ~~~~~~~~ 124 (251)
..+.....
T Consensus 292 ~~p~~~~~ 299 (547)
T PRK13295 292 ASTPFLTD 299 (547)
T ss_pred ecHHHHHH
Confidence 76655443
No 186
>PLN03052 acetate--CoA ligase; Provisional
Probab=68.41 E-value=56 Score=30.39 Aligned_cols=85 Identities=12% Similarity=-0.132 Sum_probs=55.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|.+.+...+.. .....+++++|++....+-+- -....+++.+..|+..+..+.......+.+++++.+++++.+
T Consensus 375 v~sh~~~l~~~~~---~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~ 451 (728)
T PLN03052 375 PWTQLTPLRAAAD---AWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGT 451 (728)
T ss_pred EECchHHHHHHHH---HHHhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEE
Confidence 4677655443322 223358899998766554332 123356688899998887764434567899999999999998
Q ss_pred ccchhhhhh
Q psy4550 118 KGEYMDRLE 126 (251)
Q Consensus 118 ~~~~~~~~~ 126 (251)
.+.....+.
T Consensus 452 ~Pt~l~~l~ 460 (728)
T PLN03052 452 VPSIVKTWK 460 (728)
T ss_pred CHHHHHHHH
Confidence 877655443
No 187
>PRK06188 acyl-CoA synthetase; Validated
Probab=68.09 E-value=49 Score=28.94 Aligned_cols=82 Identities=10% Similarity=0.075 Sum_probs=60.4
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
.+|+..+...+... ....++..++++....+-+-.+...+++.+..|+..+..+ ...++.+...++..++++++..
T Consensus 187 ~~s~~~l~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~g~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~ 262 (524)
T PRK06188 187 MGTHRSIATMAQIQ---LAEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLA-KFDPAEVLRAIEEQRITATFLV 262 (524)
T ss_pred eeehHHHHHHHHHH---HhhcCCCcCcEEEEecCchhhhhHHHHHHHHcCCEEEEcC-CCCHHHHHHHHHHhCCEEEEeh
Confidence 47888777655433 3445788899998888866555556677788888877665 4678899999999999999987
Q ss_pred cchhhh
Q psy4550 119 GEYMDR 124 (251)
Q Consensus 119 ~~~~~~ 124 (251)
+.....
T Consensus 263 P~~l~~ 268 (524)
T PRK06188 263 PTMIYA 268 (524)
T ss_pred HHHHHH
Confidence 765443
No 188
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.72 E-value=89 Score=27.71 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=68.9
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~ 95 (251)
.++.+|++. ..| -.+|++.+...+..+...+... +.+.|++...+|-. .-+...+++.+..|...+...
T Consensus 169 ~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~-~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~ 247 (534)
T COG0318 169 DPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGG-LTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLS 247 (534)
T ss_pred CCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhccc-CCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 367777764 223 3489999998876666655532 67888877777733 344556777788888888776
Q ss_pred C-CCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 96 T-SYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 96 ~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
+ .+.++.+...+...++..+..-+.+...
T Consensus 248 ~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ 277 (534)
T COG0318 248 PEPFDPEEVLWLIEKYKVTVLSGVPTFLRE 277 (534)
T ss_pred CCCcCHHHHHHHHHHhcceEEecchHHHHH
Confidence 5 6888889998988887777776665444
No 189
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=67.53 E-value=34 Score=31.19 Aligned_cols=85 Identities=16% Similarity=-0.014 Sum_probs=59.8
Q ss_pred CCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCcc
Q psy4550 160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEV 232 (251)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~ 232 (251)
++.++++.-..+ .+ ....+|.+.|...+..++. ..|+.++|++...+ -+...+++++..|+..+....
T Consensus 75 ~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~-- 149 (647)
T PTZ00237 75 RDQDALIYECPY-LK--KTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFD-- 149 (647)
T ss_pred CCceEEEEEcCC-CC--ceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCC--
Confidence 456666543221 11 2357899988776655554 55899999987654 345678999999999888886
Q ss_pred ccCchHHHhhhhccccC
Q psy4550 233 IYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 233 ~~~~~~~~~~i~~~~vt 249 (251)
.+.++.+.+.++..++.
T Consensus 150 ~~~~~~l~~~l~~~~~~ 166 (647)
T PTZ00237 150 GYSVKSLIDRIETITPK 166 (647)
T ss_pred CCCHHHHHHHHHhcCCC
Confidence 48899999988877653
No 190
>PRK08308 acyl-CoA synthetase; Validated
Probab=67.09 E-value=72 Score=26.97 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=60.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH--HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL--EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+..+... .++..+|++...++-.- .++..++..+..|+..+..+ ..+++.+...++..++++++
T Consensus 120 ~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~ 195 (414)
T PRK08308 120 RRSWTEIDREIEAYNEA---LNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-NKNPKFALNILRNTPQHILY 195 (414)
T ss_pred EEehHhHHHHHHHHHHh---hCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-CCCHHHHHHHHHHhCCeEEE
Confidence 58999888766555443 45677888877776543 33456778888998877664 45678888999999999988
Q ss_pred Eccchhhhhh
Q psy4550 117 TKGEYMDRLE 126 (251)
Q Consensus 117 ~~~~~~~~~~ 126 (251)
..+.....+.
T Consensus 196 ~~P~~~~~l~ 205 (414)
T PRK08308 196 AVPLMLHILG 205 (414)
T ss_pred cCHHHHHHHH
Confidence 8776554443
No 191
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=66.88 E-value=76 Score=31.03 Aligned_cols=97 Identities=7% Similarity=0.053 Sum_probs=66.7
Q ss_pred CCCceEEEec-CC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVDH-DG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~~-~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~ 95 (251)
.++.++++-. .| -.+|.+.+...+..... ..++.++|++...+|-. ..+...+++.+..|+..+..+
T Consensus 780 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~ 856 (1146)
T PRK08633 780 KPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISD---VFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHP 856 (1146)
T ss_pred CCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHH---hcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeC
Confidence 3566776532 22 35888888776655433 34677899887766632 223334677778888877766
Q ss_pred CCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 96 TSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
...+.+.+...+++.+++.+...+...+.+
T Consensus 857 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 886 (1146)
T PRK08633 857 DPTDALGIAKLVAKHRATILLGTPTFLRLY 886 (1146)
T ss_pred CCCCHHHHHHHHHHcCCeEEEecHHHHHHH
Confidence 667889999999999999999887665443
No 192
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=66.79 E-value=55 Score=26.24 Aligned_cols=83 Identities=18% Similarity=0.109 Sum_probs=51.9
Q ss_pred eEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC----CHHHHHH
Q psy4550 30 IAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY----PPALLES 105 (251)
Q Consensus 30 ~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~----~~~~l~~ 105 (251)
++|+-..+..+-.+=+ -|...+|+.|++. |..|.+++.+......- .+...|..+..++-.. ...++..
T Consensus 2 i~ir~Da~~~iG~GHv-~Rcl~LA~~l~~~----g~~v~f~~~~~~~~~~~--~i~~~g~~v~~~~~~~~~~~d~~~~~~ 74 (279)
T TIGR03590 2 ILFRADASSEIGLGHV-MRCLTLARALHAQ----GAEVAFACKPLPGDLID--LLLSAGFPVYELPDESSRYDDALELIN 74 (279)
T ss_pred EEEEecCCccccccHH-HHHHHHHHHHHHC----CCEEEEEeCCCCHHHHH--HHHHcCCeEEEecCCCchhhhHHHHHH
Confidence 3444223333444443 3566788888765 44677777776555433 3356777776664432 2456888
Q ss_pred HHhhcCccEEEEcc
Q psy4550 106 VLDDAKPSIVITKG 119 (251)
Q Consensus 106 ~l~~~~~~~vi~~~ 119 (251)
.++..+++++|+|.
T Consensus 75 ~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 75 LLEEEKFDILIVDH 88 (279)
T ss_pred HHHhcCCCEEEEcC
Confidence 88888999999886
No 193
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=65.73 E-value=66 Score=25.48 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=48.7
Q ss_pred HHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHH------C--CeEeeCCCC---CCHHHHHHHHhhcCccEEEE
Q psy4550 50 DIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKA------G--GGYLPLETS---YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 50 ~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~------G--~~~v~i~~~---~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++.+.+.+.+ +.+|++|+|..+-+.+.++++..+... | ...+-++.. .+.+.+..+.+..+..+.+.
T Consensus 14 ~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~~~~lgI~~~v~ 93 (258)
T PRK10696 14 RQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEYLESLGVPYHIE 93 (258)
T ss_pred HHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHHHHHhCCCEEEE
Confidence 34455566654 668999999999999999888777553 2 344555553 34455677888888888776
Q ss_pred cc
Q psy4550 118 KG 119 (251)
Q Consensus 118 ~~ 119 (251)
+.
T Consensus 94 ~~ 95 (258)
T PRK10696 94 EQ 95 (258)
T ss_pred Ee
Confidence 53
No 194
>PRK07476 eutB threonine dehydratase; Provisional
Probab=65.13 E-value=77 Score=26.05 Aligned_cols=90 Identities=12% Similarity=-0.155 Sum_probs=55.0
Q ss_pred CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHH
Q psy4550 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVL 107 (251)
Q Consensus 28 ~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l 107 (251)
-++.+.. ++..-|.+-=.+.+..+...+.+.|..+| | +....+---..+.+++...|..++.+-|...++.....+
T Consensus 34 ~~l~~K~-E~~nptGS~K~R~a~~~i~~a~~~~~~~g--v-v~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~ 109 (322)
T PRK07476 34 VPVWLKL-ETLQPTGSFKLRGATNALLSLSAQERARG--V-VTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAI 109 (322)
T ss_pred CeEEEEE-ccCCCCCCchHHHHHHHHHhhhhhhhCCe--E-EEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHH
Confidence 3566664 33222333222333333333455554443 2 333444455677778889998877777777777788889
Q ss_pred hhcCccEEEEccch
Q psy4550 108 DDAKPSIVITKGEY 121 (251)
Q Consensus 108 ~~~~~~~vi~~~~~ 121 (251)
+..++++++++...
T Consensus 110 ~~~GA~V~~~~~~~ 123 (322)
T PRK07476 110 RALGAEVRIVGRSQ 123 (322)
T ss_pred HHcCCEEEEECCCH
Confidence 99999999998643
No 195
>PRK10717 cysteine synthase A; Provisional
Probab=65.12 E-value=77 Score=26.12 Aligned_cols=66 Identities=9% Similarity=-0.076 Sum_probs=47.5
Q ss_pred HHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 54 TYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 54 ~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
....+.| +++|+.|.- ...+---..+.++|...|..+..+-|...++.....++..++++++++..
T Consensus 53 ~~a~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~ 119 (330)
T PRK10717 53 WDAEKRGLLKPGGTIVE-GTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAA 119 (330)
T ss_pred HHHHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCc
Confidence 3344445 467776533 55555566777788889987777777667777888999999999999853
No 196
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.55 E-value=30 Score=21.76 Aligned_cols=65 Identities=18% Similarity=0.040 Sum_probs=50.7
Q ss_pred eeeHHHHHHHHHHHHH---HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIVGT---YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~---~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
..||++|.+.-+.++. .|....++..|.++|+.-++... .-++.++...+.+++.+.+++.++++
T Consensus 9 i~t~keL~eE~~~Fv~~kA~l~k~~L~dDde~aIfnI~gT~S-----------y~V~Fl~~~~s~eev~~ele~mga~i 76 (88)
T COG4009 9 IATYKELDEELKDFVRLKAHLAKVDLNDDDELAIFNIEGTSS-----------YYVVFLEEVESEEEVERELEDMGAEI 76 (88)
T ss_pred heeHHhhhHHHHHHHHHHHHhcccccCCCCcEEEEEecCcee-----------EEEEEEeccCCHHHHHHHHHHhCchh
Confidence 4789998887776655 35566788999999998877543 34567788889999999999988765
No 197
>PRK07529 AMP-binding domain protein; Validated
Probab=64.40 E-value=1e+02 Score=27.90 Aligned_cols=97 Identities=14% Similarity=-0.004 Sum_probs=62.9
Q ss_pred CCCceEEEec-CC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVDH-DG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~~-~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~ 95 (251)
.++.++++.. .| -.+|++.+...+...+. ..++.++|++....|-. ...+..+++.+..|+.++..+
T Consensus 211 ~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~ 287 (632)
T PRK07529 211 GPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL---LLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLAT 287 (632)
T ss_pred CcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH---hcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecC
Confidence 3466666532 22 24888888766544433 34678899988777743 233446778888898877665
Q ss_pred CCC-C----HHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 96 TSY-P----PALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 96 ~~~-~----~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
+.. . ...+..++++.+++.++..+.....+
T Consensus 288 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 322 (632)
T PRK07529 288 PQGYRGPGVIANFWKIVERYRINFLSGVPTVYAAL 322 (632)
T ss_pred ccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHH
Confidence 421 1 25677889999999999877655444
No 198
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=64.08 E-value=42 Score=28.26 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-----CCHHHHHHHHhhcCccEEE
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi 116 (251)
.+...|...++++||.|.+-.+. +.....++...|+.++.++.. .+.+.+...+.. +.++|+
T Consensus 60 al~lal~al~~~~Gd~Viv~~~~---~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~-~tkav~ 126 (379)
T PRK11658 60 GMHITLMALGIGPGDEVITPSLT---WVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITP-RTKAII 126 (379)
T ss_pred HHHHHHHHcCCCCCCEEEECCCc---HHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhccc-CCeEEE
Confidence 34444566678899998765443 444455667789887766532 357778877753 556665
No 199
>PRK05852 acyl-CoA synthetase; Validated
Probab=64.08 E-value=1e+02 Score=27.10 Aligned_cols=84 Identities=10% Similarity=-0.000 Sum_probs=58.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH--HHHHHHHHHHHHCCeEee-CCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL--EWTISYIAIHKAGGGYLP-LETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~-i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+|++.+...+..+...+ +++++|++....+-.. .+...+++.+..|...+. -....++..+...++..+++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~ 271 (534)
T PRK05852 195 PWTHANIASSVRAIITGY---RLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWY 271 (534)
T ss_pred EecHHHHHHHHHHHHHHh---CCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEE
Confidence 478888877666555433 6788998888777443 344567777777765443 2335678889999999999999
Q ss_pred EEccchhhhh
Q psy4550 116 ITKGEYMDRL 125 (251)
Q Consensus 116 i~~~~~~~~~ 125 (251)
+..+.....+
T Consensus 272 ~~~P~~~~~l 281 (534)
T PRK05852 272 TAVPTIHQIL 281 (534)
T ss_pred EcChHHHHHH
Confidence 9877765544
No 200
>PRK13388 acyl-CoA synthetase; Provisional
Probab=63.68 E-value=1.1e+02 Score=27.14 Aligned_cols=91 Identities=8% Similarity=-0.041 Sum_probs=58.6
Q ss_pred CCCceEEEec-CC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVDH-DG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~~-~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~ 95 (251)
.++.++++-. .| -.+|++.+...+.... ...+++++|++....+-.-. +...+++.+..|+..+. .
T Consensus 148 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~-~ 223 (540)
T PRK13388 148 DAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALT---ERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVAL-P 223 (540)
T ss_pred CCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHH---HHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEE-C
Confidence 3466776532 22 2488888876555443 33478899998877764322 22334456667776654 4
Q ss_pred CCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 96 TSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
+..++..+...++..+++++...+.
T Consensus 224 ~~~~~~~~~~~i~~~~vt~~~~~p~ 248 (540)
T PRK13388 224 AKFSASGFLDDVRRYGATYFNYVGK 248 (540)
T ss_pred CCCCHHHHHHHHHHhCCeEEEehHH
Confidence 5577888999999999998865443
No 201
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=63.40 E-value=1e+02 Score=26.98 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=64.7
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH---HHHHHHHHCCeEeeC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI---SYIAIHKAGGGYLPL 94 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~---~~~a~~~~G~~~v~i 94 (251)
.++.+|++- ..| -.+|.+.+...+.... ...++.++|++...+|-...+-. ..++++..|+..+..
T Consensus 181 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~ 257 (527)
T TIGR02275 181 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSV---EICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLA 257 (527)
T ss_pred CCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHH---hhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEEC
Confidence 455666653 222 3588888876655433 34577889999888775433321 356777888877654
Q ss_pred CCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 95 ETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
+...+..+...+++.+++++...+.....+
T Consensus 258 -~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 287 (527)
T TIGR02275 258 -PDPSPTDCFPLIERHKVTVTALVPPAVALW 287 (527)
T ss_pred -CCCCHHHHHHHHHHhCCeEEEecHHHHHHH
Confidence 445778888899999999999887765443
No 202
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=62.96 E-value=68 Score=27.80 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=59.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCC--CCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETS--YPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~--~~~~~l~~~l~~~~~~~v 115 (251)
.+|++.+...+..+.. ..++..++++....+-+ ...+..+++++..|+..+..++. .....+.+.++..+++.+
T Consensus 160 ~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (502)
T TIGR01734 160 QISHDNLVSFTNWMLA---DFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVW 236 (502)
T ss_pred EEecHHHHHHHHHHHH---hCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEE
Confidence 5889888766654433 35778888888777644 23355677889999998877653 467788888999999888
Q ss_pred EEccchhhh
Q psy4550 116 ITKGEYMDR 124 (251)
Q Consensus 116 i~~~~~~~~ 124 (251)
...+...+.
T Consensus 237 ~~~p~~~~~ 245 (502)
T TIGR01734 237 VSTPSFVDM 245 (502)
T ss_pred EEChhHHHH
Confidence 887765443
No 203
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=62.86 E-value=22 Score=23.89 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
..+...+...|+.+++.|.+++.++.....+.+.+...|..
T Consensus 64 ~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~ 104 (118)
T cd01449 64 EELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYK 104 (118)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 45566677889889999999999887777777777777763
No 204
>PLN03102 acyl-activating enzyme; Provisional
Probab=62.85 E-value=28 Score=31.11 Aligned_cols=68 Identities=6% Similarity=-0.095 Sum_probs=51.2
Q ss_pred EeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 180 VCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.+|.+.|...+..++. ..|+.++|++...+ -+...+|+++..|+.++..+. .+++.++...+++.+++
T Consensus 39 ~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~~--~~~~~~l~~~l~~~~~~ 113 (579)
T PLN03102 39 RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINT--RLDATSIAAILRHAKPK 113 (579)
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccc--cCCHHHHHHHHhccCCe
Confidence 5888888776655554 45788999886543 345567899999999988887 47899999888887653
No 205
>PRK14057 epimerase; Provisional
Probab=61.67 E-value=80 Score=25.09 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC----------eEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG----------GYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~----------~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
++...+.+.| .|.|.+..+.+....-.+--+...|+ .-+.++|..+.+.+..++...+.-+|.+
T Consensus 89 ~~i~~~~~aG---ad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMt 162 (254)
T PRK14057 89 TAAQACVKAG---AHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLA 162 (254)
T ss_pred HHHHHHHHhC---CCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEE
Confidence 3444455555 67899998876655556666777775 7888999999999999999877666665
No 206
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=61.67 E-value=54 Score=27.50 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC-----CCCHHHHHHHHhh---cCccEEEE
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET-----SYPPALLESVLDD---AKPSIVIT 117 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~l~~~l~~---~~~~~vi~ 117 (251)
..+...+...++++||.|.+-.+. +....-++...|+.++.++. ..+.+++...++. -++++|+.
T Consensus 55 ~al~~~l~al~~~~Gd~Viv~~~~---~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~ 127 (380)
T TIGR03588 55 SALHIACLALGVGPGDRVWTTPIT---FVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVP 127 (380)
T ss_pred HHHHHHHHHcCCCCCCEEEeCCcc---hHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEE
Confidence 334444556678899998776554 34445667778887766543 2467888888863 35566653
No 207
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=61.59 E-value=93 Score=28.46 Aligned_cols=97 Identities=12% Similarity=0.005 Sum_probs=64.4
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEee
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLIN--QGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLP 93 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~--~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~ 93 (251)
.++.+|.+- ..| -.+|.+.+...+..+...+.. ..+.++|++..++|-. .+... .+.++..|+..+.
T Consensus 218 ~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~ 296 (660)
T PLN02861 218 QKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVI-ETYCISKGASIGF 296 (660)
T ss_pred CCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEE
Confidence 356666653 222 358999988777665544321 2356789888887743 23333 3446788887665
Q ss_pred CCCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.. ..+..+...++..++++++.-+...+.+
T Consensus 297 ~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l 326 (660)
T PLN02861 297 WQ--GDIRYLMEDVQALKPTIFCGVPRVYDRI 326 (660)
T ss_pred eC--CCHHHHHHHHHHhCCcEEeechHHHHHH
Confidence 42 4678899999999999999887766654
No 208
>PLN02654 acetate-CoA ligase
Probab=61.26 E-value=58 Score=29.80 Aligned_cols=85 Identities=13% Similarity=-0.035 Sum_probs=59.0
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhHH----HHHHHHHhhhcCccEEEecCc
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNVF----FVWEMLRPLTQGIPMYVISDE 231 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~l~~G~~~v~~~~~ 231 (251)
.++.+|++..... .| ....+|.+.|...+..++. ..|+.++|++...++ +...+++++..|+..+..+.
T Consensus 102 ~~~~~Al~~~~~~-~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~- 177 (666)
T PLN02654 102 NGDKIAIYWEGNE-PG--FDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFA- 177 (666)
T ss_pred CCCCEEEEEEcCC-CC--ceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCC-
Confidence 3466776542221 11 2356899988776655443 568999999876553 35678999999999888876
Q ss_pred cccCchHHHhhhhcccc
Q psy4550 232 VIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~v 248 (251)
.+.++.+...++..++
T Consensus 178 -~~~~~~l~~~l~~~~~ 193 (666)
T PLN02654 178 -GFSAESLAQRIVDCKP 193 (666)
T ss_pred -CCCHHHHHHHHHhcCc
Confidence 4888888888877654
No 209
>PRK06839 acyl-CoA synthetase; Validated
Probab=61.18 E-value=94 Score=26.85 Aligned_cols=83 Identities=13% Similarity=0.030 Sum_probs=57.1
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|+..+...+.. .....++.++|++...+|-.-. +....++.+..|+..+. .....++++...+++.+++++.
T Consensus 168 ~~s~~~l~~~~~~---~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~-~~~~~~~~~~~~i~~~~~t~~~ 243 (496)
T PRK06839 168 VLTQENMFWNALN---NTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIV-PRKFEPTKALSMIEKHKVTVVM 243 (496)
T ss_pred EEEhHHHHHHHHH---HHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEE-ccCCCHHHHHHHHHhhCCeEEE
Confidence 4788877543332 2344578899998887774322 23344667777877654 4567889999999999999999
Q ss_pred Eccchhhhh
Q psy4550 117 TKGEYMDRL 125 (251)
Q Consensus 117 ~~~~~~~~~ 125 (251)
..+.....+
T Consensus 244 ~~P~~~~~l 252 (496)
T PRK06839 244 GVPTIHQAL 252 (496)
T ss_pred ehHHHHHHH
Confidence 877765544
No 210
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=60.69 E-value=48 Score=29.89 Aligned_cols=86 Identities=15% Similarity=-0.002 Sum_probs=58.9
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCc
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDE 231 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~ 231 (251)
.++.++++.... .+| ....+|.+.|...+..++. ..|+.++|++...+ -+...+++++..|+..+..+.
T Consensus 70 ~p~~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~- 145 (625)
T TIGR02188 70 RPDKVAIIWEGD-EPG--EVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFG- 145 (625)
T ss_pred CCCCeEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCC-
Confidence 456777764322 122 2456888888766554443 45889999886644 335568889999998888876
Q ss_pred cccCchHHHhhhhccccC
Q psy4550 232 VIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~vt 249 (251)
.+.+..+...++..++.
T Consensus 146 -~~~~~~l~~~l~~~~~~ 162 (625)
T TIGR02188 146 -GFSAEALADRINDAGAK 162 (625)
T ss_pred -CCCHHHHHHHHHhcCCC
Confidence 48888888888776653
No 211
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=60.47 E-value=1e+02 Score=30.71 Aligned_cols=96 Identities=8% Similarity=0.003 Sum_probs=66.2
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~ 96 (251)
.++.+|++- ..| -.+|.+.+........ ...+++++|++....+-+.+. +.-+++.+..|+..+..++
T Consensus 596 ~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 672 (1296)
T PRK10252 596 QPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQ---NHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEP 672 (1296)
T ss_pred CCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHH---HhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECCh
Confidence 355666653 222 3588887766544332 345788999999888765444 3446777888998887665
Q ss_pred --CCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 97 --SYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 97 --~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
...++.+...+++.+++++...+.....
T Consensus 673 ~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~ 702 (1296)
T PRK10252 673 EAHRDPLAMQQFFAEYGVTTTHFVPSMLAA 702 (1296)
T ss_pred hccCCHHHHHHHHHHcCCeEEEeCHHHHHH
Confidence 4568889999999999999887765443
No 212
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=60.30 E-value=95 Score=25.48 Aligned_cols=91 Identities=13% Similarity=-0.060 Sum_probs=58.1
Q ss_pred CCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH
Q psy4550 27 PDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLES 105 (251)
Q Consensus 27 ~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~ 105 (251)
+.++.+.... +-.=|+++ +.+..+...+.+.|..+++.|.... .+---..+.++|...|..++.+-|...+.....
T Consensus 15 g~~i~~K~E~~nptGS~K~--R~a~~~l~~a~~~g~~~~~~vv~aS-sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~ 91 (316)
T cd06448 15 GCNVFLKLENLQPSGSFKI--RGIGHLCQKSAKQGLNECVHVVCSS-GGNAGLAAAYAARKLGVPCTIVVPESTKPRVVE 91 (316)
T ss_pred CCeEEEEeccCCCcCChHH--HHHHHHHHHHHHhhcccCCeEEEeC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 3467776422 12233433 2233333334444544566654444 455556777888899998888878777788889
Q ss_pred HHhhcCccEEEEccc
Q psy4550 106 VLDDAKPSIVITKGE 120 (251)
Q Consensus 106 ~l~~~~~~~vi~~~~ 120 (251)
.++..++++++++..
T Consensus 92 ~l~~~GA~v~~~~~~ 106 (316)
T cd06448 92 KLRDEGATVVVHGKV 106 (316)
T ss_pred HHHHcCCEEEEECCc
Confidence 999999999998765
No 213
>PRK07470 acyl-CoA synthetase; Validated
Probab=59.78 E-value=1.2e+02 Score=26.53 Aligned_cols=86 Identities=14% Similarity=0.078 Sum_probs=54.5
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC-CCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE-TSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~-~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|.+.+...+......+. .+..++|++..+.+-+-.+-...+..+..|+..+.++ ...+++.+...++..++++++.
T Consensus 182 ~~s~~~l~~~~~~~~~~~~-~~~~~~d~~l~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~ 260 (528)
T PRK07470 182 VLTHGQMAFVITNHLADLM-PGTTEQDASLVVAPLSHGAGIHQLCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFT 260 (528)
T ss_pred EEehhhHHHHHHHHHHHhc-cCCCcccEEEEeccchhHHHHHHHHHHhcCceEEEecccCcCHHHHHHHHHhcCCeEEec
Confidence 4888887544332111111 2567889888888755443333333345555554443 3568899999999999999999
Q ss_pred ccchhhhh
Q psy4550 118 KGEYMDRL 125 (251)
Q Consensus 118 ~~~~~~~~ 125 (251)
.+.....+
T Consensus 261 ~P~~~~~l 268 (528)
T PRK07470 261 VPTILKML 268 (528)
T ss_pred hHHHHHHH
Confidence 87766544
No 214
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=59.41 E-value=36 Score=28.74 Aligned_cols=48 Identities=13% Similarity=-0.089 Sum_probs=29.1
Q ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhc---CccEEEE
Q psy4550 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDA---KPSIVIT 117 (251)
Q Consensus 64 g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~---~~~~vi~ 117 (251)
+-+++.+.+.+.+.+ ...|..+..++...+.+.+...+... +.++++.
T Consensus 98 ~~~i~aVG~~Ta~aL------~~~G~~~~~~p~~~~~e~L~~~l~~~~~~g~~vli~ 148 (381)
T PRK07239 98 SARLLARGPKATGAI------RAAGLREEWSPASESSAEVLEYLLEEGVAGKRIAVQ 148 (381)
T ss_pred CCeEEEECccHHHHH------HHcCCCCccCCCCCccHHHHHHHhcCCCCCCEEEEE
Confidence 455666666554433 35677666666677777777776542 3455554
No 215
>PRK13383 acyl-CoA synthetase; Provisional
Probab=59.37 E-value=86 Score=27.42 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=50.7
Q ss_pred HHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 54 TYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 54 ~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
..+...+++++|++....|-. .-.....++.+..|+.++... ..+.+.+...++..+++.+...+.....+
T Consensus 207 ~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 278 (516)
T PRK13383 207 TILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHR-HFDAEAALAQASLHRADAFTAVPVVLARI 278 (516)
T ss_pred hHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECC-CCCHHHHHHHHHHhCCcEEEecHHHHHHH
Confidence 344556889999998877732 223344566677788877654 56788888999999999999877765444
No 216
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=59.23 E-value=1e+02 Score=26.68 Aligned_cols=90 Identities=11% Similarity=-0.181 Sum_probs=57.6
Q ss_pred CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHH
Q psy4550 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESV 106 (251)
Q Consensus 28 ~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~ 106 (251)
.++.+.. ++..-|.+-=.+.+..+.....+.|. ++|+.|. .+..+---..+.++|...|..+..+-|...+++-...
T Consensus 26 ~~i~~K~-E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv-~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~ 103 (454)
T TIGR01137 26 CELLAKC-EFFNPGGSVKDRIALRMIEDAEASGRLKPGDTII-EPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDV 103 (454)
T ss_pred ceEEEEE-hhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEE-EeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHH
Confidence 3566653 33222332223334344444444554 6777654 4455556677778889999988777776666778888
Q ss_pred HhhcCccEEEEcc
Q psy4550 107 LDDAKPSIVITKG 119 (251)
Q Consensus 107 l~~~~~~~vi~~~ 119 (251)
++..++++++++.
T Consensus 104 ~~~~GA~v~~~~~ 116 (454)
T TIGR01137 104 LKALGAEIVRTPT 116 (454)
T ss_pred HHHCCCEEEEcCC
Confidence 9999999999864
No 217
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=59.19 E-value=1e+02 Score=27.15 Aligned_cols=83 Identities=7% Similarity=-0.024 Sum_probs=59.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH---HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW---TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~---~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+|.+.+...+.... ...+++++|++...+|-.-.+ ....++++..|+..+.. +..++..+...+++.+++++
T Consensus 201 ~~s~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~ 276 (536)
T PRK10946 201 PRTHNDYYYSVRRSV---EICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLA-PDPSATLCFPLIEKHQVNVT 276 (536)
T ss_pred EEehHHHHHHHHHHH---HhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEEC-CCCCHHHHHHHHHHhCCcEE
Confidence 589998888666543 345788999998877754322 22467788889887755 44577778889999999999
Q ss_pred EEccchhhhh
Q psy4550 116 ITKGEYMDRL 125 (251)
Q Consensus 116 i~~~~~~~~~ 125 (251)
...+.....+
T Consensus 277 ~~~p~~~~~l 286 (536)
T PRK10946 277 ALVPPAVSLW 286 (536)
T ss_pred EeChHHHHHH
Confidence 8877655443
No 218
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=59.19 E-value=72 Score=29.05 Aligned_cols=67 Identities=10% Similarity=-0.021 Sum_probs=48.7
Q ss_pred cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC---CCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 59 QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET---SYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.+++++|++....+.+......+++.+..|+..+..+. ...++.+..++++.+++++.+.+.....+
T Consensus 300 ~~~~~~d~~~~~~~~~~~~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 369 (655)
T PRK03584 300 CDLGPGDRFFWYTTCGWMMWNWLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDAC 369 (655)
T ss_pred cCCCCCCEEEEcCCchHHhHHHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHH
Confidence 47888998876666554333456788899998887653 24678899999999999988876655443
No 219
>PRK10595 SOS cell division inhibitor; Provisional
Probab=59.19 E-value=59 Score=23.90 Aligned_cols=66 Identities=8% Similarity=-0.017 Sum_probs=41.6
Q ss_pred HHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC--C-CCCHHHHHH---HHhhcCccEEEEc
Q psy4550 53 GTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE--T-SYPPALLES---VLDDAKPSIVITK 118 (251)
Q Consensus 53 a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~--~-~~~~~~l~~---~l~~~~~~~vi~~ 118 (251)
+.+|.+.|+..+..+.|...+..+.+.++-=+++.|...+.+- | ..+.+++.+ ..+..++-.++.-
T Consensus 70 ~~~L~~~Gl~l~rvl~v~~~~~~d~Lwa~EqaLrsG~~~aVL~Wlp~~l~~~~~RRLQlAAe~g~~l~fl~R 141 (164)
T PRK10595 70 REWLQASGLPLTKVMQLSQLSPCHTVEAMERALRTGNYSVVLGWLPDELTEEEHARLVDAAQEGNAMGFIMR 141 (164)
T ss_pred HHHHHHcCCCcccEEEEecCCcHHHHHHHHHHHhhCCCcEEEECCcccCCHHHHHHHHHHHHhCCCEEEEEe
Confidence 4668888888777776767777888888888888885333222 3 555554444 3344455444443
No 220
>PRK05857 acyl-CoA synthetase; Validated
Probab=59.15 E-value=40 Score=29.80 Aligned_cols=68 Identities=9% Similarity=-0.171 Sum_probs=50.2
Q ss_pred EEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 179 IVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
..+|...+...+..++. ..++.+++++...+ .++..+++++..|+..+..+. .++++.+.+.++..++
T Consensus 40 ~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l~~--~~~~~~l~~~~~~~~~ 114 (540)
T PRK05857 40 SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADG--NLPIAAIERFCQITDP 114 (540)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCc--cCCHHHHHHHHHhcCC
Confidence 45899988776665554 44788888886543 345668899999999998886 4788888888876654
No 221
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=58.97 E-value=32 Score=22.56 Aligned_cols=52 Identities=6% Similarity=-0.131 Sum_probs=37.7
Q ss_pred eeeHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 39 SITFKQLDEWT----DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 39 ~~T~~~l~~~~----~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.+.+.++.... ..+...+...+..+++.|.+++.++.....+...+...|..
T Consensus 37 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~ 92 (106)
T cd01519 37 NIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSKAAAELARSLGYE 92 (106)
T ss_pred EechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHHHHHHHHHHcCCc
Confidence 36677765432 34566677778778899999999988877777777778863
No 222
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=58.65 E-value=38 Score=25.21 Aligned_cols=47 Identities=2% Similarity=-0.141 Sum_probs=33.1
Q ss_pred CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH
Q psy4550 37 GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84 (251)
Q Consensus 37 ~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~ 84 (251)
...+||.|+.+.+.++|..+.+. +...+.+.+...++...++..+|-
T Consensus 14 ~~~~s~~~i~~~i~~la~~i~~~-~~~~~~viV~i~~gg~~~A~~La~ 60 (181)
T PRK09162 14 DCLVSAAEVEAAIDRMADEITAD-LADENPLVLCVMGGGLVFTGQLLP 60 (181)
T ss_pred cEeecHHHHHHHHHHHHHHHHHH-cCCCCeEEEEECCCcHHHHHHHHH
Confidence 34589999999999999999885 222223556666666666666654
No 223
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=58.54 E-value=11 Score=23.10 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEE
Q psy4550 49 TDIVGTYLINQGCIVGSTVGV 69 (251)
Q Consensus 49 ~~~~a~~L~~~g~~~g~~V~l 69 (251)
..-+-..|++.|+++||.|-|
T Consensus 42 ~~Gv~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 42 KMGVEKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HTTHHHHHHTTT--TT-EEEE
T ss_pred HCCHHHHHHHcCCCCCCEEEE
Confidence 333566788899999999976
No 224
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=58.46 E-value=1.3e+02 Score=29.52 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=63.5
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~ 95 (251)
.++.++.+- ..| -.+|.+.+...+..... ..++.++|++...+|-. ..+...++..+..|...+..+
T Consensus 791 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~ 867 (1140)
T PRK06814 791 DPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAA---RIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYP 867 (1140)
T ss_pred CCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHH---hhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEec
Confidence 456666653 222 24899888766655543 34678899998887743 223345666777888877665
Q ss_pred CCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 96 TSYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
.......+...+++.+++.+...+...+.
T Consensus 868 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~ 896 (1140)
T PRK06814 868 SPLHYRIIPELIYDTNATILFGTDTFLNG 896 (1140)
T ss_pred CcccHHHHHHHHHhcCCEEEEecHHHHHH
Confidence 55556677788889999988887665443
No 225
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=58.23 E-value=36 Score=34.14 Aligned_cols=88 Identities=16% Similarity=0.013 Sum_probs=57.5
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCc
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDE 231 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~ 231 (251)
.|+.++++...+...+......+|++.+...+..++. ..|+.+++++...+ -+...+++++..|+..+..+.
T Consensus 249 ~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp- 327 (1389)
T TIGR03443 249 HPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDP- 327 (1389)
T ss_pred CCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCC-
Confidence 4567776643221111122446899988877665554 44788888876543 345678999999999998887
Q ss_pred cccCchHHHhhhhcccc
Q psy4550 232 VIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~v 248 (251)
.+.+..+...++..++
T Consensus 328 -~~p~~~~~~~l~~~~~ 343 (1389)
T TIGR03443 328 -AYPPARQTIYLSVAKP 343 (1389)
T ss_pred -CCcHHHHHHHHHhcCC
Confidence 3677777777766554
No 226
>PLN02550 threonine dehydratase
Probab=58.06 E-value=1.5e+02 Score=26.96 Aligned_cols=92 Identities=11% Similarity=0.083 Sum_probs=54.6
Q ss_pred CCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH
Q psy4550 27 PDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLES 105 (251)
Q Consensus 27 ~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~ 105 (251)
+.++.+...+ +.+-||+. +-..+++ ..|......+| .|+ ...+=-...+.++|..+|+.+..+-|...+..-..
T Consensus 123 g~~IylK~E~lqptGSFK~-RGA~n~I-~~L~~e~~~~G-VV~--aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~ 197 (591)
T PLN02550 123 GVKVLLKREDLQPVFSFKL-RGAYNMM-AKLPKEQLDKG-VIC--SSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQ 197 (591)
T ss_pred CCEEEEEEcCCCCCCcHHH-HHHHHHH-HHHHHhcCCCC-EEE--ECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 3455555322 22234443 2223333 33433345566 444 34444445566788899987777777677777778
Q ss_pred HHhhcCccEEEEccchhh
Q psy4550 106 VLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 106 ~l~~~~~~~vi~~~~~~~ 123 (251)
.++..+++++++.+.+.+
T Consensus 198 ~~r~~GAeVvl~g~~~de 215 (591)
T PLN02550 198 SVERLGATVVLVGDSYDE 215 (591)
T ss_pred HHHHcCCEEEEeCCCHHH
Confidence 889999999999875433
No 227
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=58.01 E-value=98 Score=24.92 Aligned_cols=67 Identities=9% Similarity=-0.035 Sum_probs=48.1
Q ss_pred HHHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 54 TYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 54 ~~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
..+.+.|. ++|+.|.. ...+---..+.++|...|..++.+-|...+......++..++++++++...
T Consensus 42 ~~a~~~g~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~ 109 (291)
T cd01561 42 EDAEKRGLLKPGTTIIE-PTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAE 109 (291)
T ss_pred HHHHHcCCCCCCCEEEE-eCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCC
Confidence 34455553 35666543 555556677778888999987777776666777788999999999997654
No 228
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=57.91 E-value=14 Score=22.60 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=15.3
Q ss_pred HHHHHHhcCCCCCCEEEEE
Q psy4550 52 VGTYLINQGCIVGSTVGVL 70 (251)
Q Consensus 52 ~a~~L~~~g~~~g~~V~l~ 70 (251)
+-..|++.|+++||.|-+.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHHcCCCCCCEEEEc
Confidence 4556788899999999774
No 229
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=57.81 E-value=1e+02 Score=24.97 Aligned_cols=90 Identities=7% Similarity=-0.104 Sum_probs=59.3
Q ss_pred CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHH
Q psy4550 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESV 106 (251)
Q Consensus 28 ~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~ 106 (251)
.++.+.. ++..-|.+-=.+.+..+.....+.| +.+|+.|.- ...+---..+.++|...|..+..+-|...+..-...
T Consensus 23 ~~i~~K~-E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~ 100 (290)
T TIGR01138 23 SEVWLKL-EGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIE-ATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAA 100 (290)
T ss_pred CeEEEEE-ccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEE-ECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 4566663 4333344333344444444455555 467776644 555556677778888899887777776666777788
Q ss_pred HhhcCccEEEEcc
Q psy4550 107 LDDAKPSIVITKG 119 (251)
Q Consensus 107 l~~~~~~~vi~~~ 119 (251)
++..++++++++.
T Consensus 101 ~~~~GA~v~~v~~ 113 (290)
T TIGR01138 101 MRAYGAELILVTK 113 (290)
T ss_pred HHHcCCEEEEeCC
Confidence 9999999999875
No 230
>PLN02356 phosphateglycerate kinase
Probab=57.47 E-value=1.1e+02 Score=26.51 Aligned_cols=72 Identities=8% Similarity=-0.076 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 46 DEWTDIVGTYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 46 ~~~~~~~a~~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
.+-+..+...+.+.|. ++|..|. .....---..+.++|...|..++.+-|...+.+-...++..+++++.++
T Consensus 85 dR~A~~~i~~a~~~g~~~~~g~Vv-eaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~ 157 (423)
T PLN02356 85 DRVAVKIIEEALESGQLFPGGVVT-EGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVR 157 (423)
T ss_pred HHHHHHHHHHHHhCCccCCCCEEE-EeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEEC
Confidence 3444444444555553 4776654 3444444677888888999887777777777777889999999999985
No 231
>PRK07868 acyl-CoA synthetase; Validated
Probab=57.07 E-value=1.2e+02 Score=29.57 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=45.5
Q ss_pred cCCCCCCEEEEEccCCHHH--HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 59 QGCIVGSTVGVLMERCLEW--TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~~~~--~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.++.++|++...+|=+-.+ ...+++.+..|.. +.+.+..+++.+...+++.+++++...+.....+
T Consensus 641 ~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~-vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L 708 (994)
T PRK07868 641 AALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSR-IALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREV 708 (994)
T ss_pred cCCCCCCeEEEecChHHHhHHHHHHHHHhccceE-EEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHH
Confidence 4788899988887743222 2233444444444 4455678999999999999999999876655444
No 232
>PRK06381 threonine synthase; Validated
Probab=56.55 E-value=50 Score=27.06 Aligned_cols=89 Identities=13% Similarity=-0.013 Sum_probs=56.0
Q ss_pred CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHH
Q psy4550 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVL 107 (251)
Q Consensus 28 ~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l 107 (251)
.++.+.. ++..-|.+-=.+.+..+...+.+.|. +.| +....+---..+.++|...|..+..+-|...++.-...+
T Consensus 31 ~~i~~K~-E~~nptGS~K~R~a~~~l~~a~~~g~---~~l-v~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l 105 (319)
T PRK06381 31 RKIYLKF-EGANPTGTQKDRIAEAHVRRAMRLGY---SGI-TVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEM 105 (319)
T ss_pred ceEEEEe-cCCCCccCcHHHHHHHHHHHHHHcCC---CEE-EEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHH
Confidence 4677764 33222322222333344444555553 334 445556666777888889998777766666666777789
Q ss_pred hhcCccEEEEccch
Q psy4550 108 DDAKPSIVITKGEY 121 (251)
Q Consensus 108 ~~~~~~~vi~~~~~ 121 (251)
+..+++++++...+
T Consensus 106 ~~~GA~V~~~~~~~ 119 (319)
T PRK06381 106 EKYGAEIIYVDGKY 119 (319)
T ss_pred HHcCCEEEEcCCCH
Confidence 99999999998654
No 233
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=56.15 E-value=83 Score=27.23 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHH--HHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYI--AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~--a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+ .++.......++ .+...|+.+..++...+++++...++. +.++|+..
T Consensus 97 l~~GD~VI~-~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~-~Tk~I~~e 154 (432)
T PRK06702 97 CSSGDHLLC-SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND-KTKLVYAE 154 (432)
T ss_pred cCCCCEEEE-CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCc-CCeEEEEE
Confidence 678887755 333333222222 246678888888776677778887754 56666654
No 234
>PRK09088 acyl-CoA synthetase; Validated
Probab=54.95 E-value=60 Score=28.05 Aligned_cols=69 Identities=7% Similarity=-0.161 Sum_probs=49.1
Q ss_pred EEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 179 IVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
..+|...+...+..++. ..++..++++.... .+...+++++..|+..+..+. ...+..+...+++.+++
T Consensus 21 ~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~--~~~~~~~~~~~~~~~~~ 96 (488)
T PRK09088 21 RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNW--RLSASELDALLQDAEPR 96 (488)
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCc--cCCHHHHHHHHHhCCCC
Confidence 35788888766554443 45788888875533 345567899999999988886 37788888888776653
No 235
>KOG0025|consensus
Probab=54.66 E-value=82 Score=25.72 Aligned_cols=65 Identities=17% Similarity=-0.023 Sum_probs=51.2
Q ss_pred CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe-eCCCCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 60 GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL-PLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v-~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
.+++||.|.=-..||.---+.+-=|-..|+-.+ .+-.+...+++...|+..+++.||++++...+
T Consensus 157 ~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~ 222 (354)
T KOG0025|consen 157 QLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDR 222 (354)
T ss_pred hcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcch
Confidence 577899988888888777667767777776444 34556678999999999999999999887644
No 236
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=54.53 E-value=30 Score=28.47 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=41.7
Q ss_pred eeHHHHHHH------HHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 40 ITFKQLDEW------TDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 40 ~T~~~l~~~------~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
+.|.++... ...+...+.++|+.+++.|.++|.++......++++..+|..-+
T Consensus 239 ip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v 297 (320)
T PLN02723 239 VPFPQMLDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDV 297 (320)
T ss_pred cCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCe
Confidence 566665432 35667778888999999999999999998889999998886533
No 237
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=54.19 E-value=31 Score=27.68 Aligned_cols=52 Identities=10% Similarity=0.113 Sum_probs=41.9
Q ss_pred eeeHHHHHH-----HHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 39 SITFKQLDE-----WTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 39 ~~T~~~l~~-----~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.+.|.++.. ....+...|.+.|+.+++.|.++|.++...-.+++++..+|..
T Consensus 201 ~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~ 257 (281)
T PRK11493 201 NVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVP 257 (281)
T ss_pred CCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 466777763 2455666678889999999999999999999999999888875
No 238
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=54.08 E-value=70 Score=27.68 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=36.3
Q ss_pred CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-----CCHHHHHHHHhhcCccEEEEc
Q psy4550 60 GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~~ 118 (251)
++++||.|.+-.+.. .....++...|+.+++++.. .+.+.+...+.. +.++|+..
T Consensus 107 ~~~pGd~VIv~~~t~---~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~-~tkaVi~~ 166 (438)
T PRK15407 107 ALKPGDEVITVAAGF---PTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSP-KTKAIMIA 166 (438)
T ss_pred CCCCCCEEEECCCCc---HHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCc-CCeEEEEe
Confidence 789999987765543 44456667789887766542 356777777643 55666653
No 239
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=53.71 E-value=49 Score=29.37 Aligned_cols=68 Identities=7% Similarity=0.003 Sum_probs=49.3
Q ss_pred EEeccHHHHHHHHHHHHh----CCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 179 IVCPHRGAVHAYKWRHRA----YPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
..+|+..+...+..++.. .++.++|++...+ .+...+++++..|+..+..+. .+..+++...+++.++
T Consensus 48 ~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~~--~~~~~~l~~~l~~~~~ 123 (562)
T PRK05677 48 KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNP--LYTAREMEHQFNDSGA 123 (562)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecCC--CCCHHHHHHHHhccCc
Confidence 358999888776666543 4788899886543 445678899999999988886 3677777777766543
No 240
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=53.61 E-value=1e+02 Score=26.56 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=39.1
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC---------CCH-----HHHHHHHhhcC-cc----EEEEccch
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS---------YPP-----ALLESVLDDAK-PS----IVITKGEY 121 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~---------~~~-----~~l~~~l~~~~-~~----~vi~~~~~ 121 (251)
+++||+| ++-+|+-..+.. |+...|+.++-++|. .++ +.+...++... ++ ++|+.+.+
T Consensus 103 ~~~gd~V-Lv~RN~HkSv~~--alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY 179 (417)
T PF01276_consen 103 CRPGDKV-LVDRNCHKSVYN--ALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY 179 (417)
T ss_dssp TTTTCEE-EEETT--HHHHH--HHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T
T ss_pred cCCCCEE-EEcCCcHHHHHH--HHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC
Confidence 5789986 666777666665 999999999987763 233 78888887654 33 56666654
No 241
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=53.02 E-value=52 Score=29.04 Aligned_cols=84 Identities=7% Similarity=-0.111 Sum_probs=56.2
Q ss_pred eeeHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYL-INQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L-~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|...+.... .+..+ ...++.++|++..+.+-.-. .....++.+..|+..+...+...++.+...++..+++.+.
T Consensus 195 ~~s~~~~~~~~--~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~ 272 (539)
T PRK07008 195 LYSHRSTVLHA--YGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSA 272 (539)
T ss_pred EEecHHHHHHH--HHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEE
Confidence 47776664322 22222 23478889988877763222 2333467788898877666777889999999999999988
Q ss_pred Eccchhhh
Q psy4550 117 TKGEYMDR 124 (251)
Q Consensus 117 ~~~~~~~~ 124 (251)
..+.....
T Consensus 273 ~~P~~~~~ 280 (539)
T PRK07008 273 GVPTVWLG 280 (539)
T ss_pred echHHHHH
Confidence 87665443
No 242
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=52.31 E-value=1.4e+02 Score=25.83 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=29.7
Q ss_pred CCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHH----HHHHHhhcCccEEEEcc
Q psy4550 63 VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPAL----LESVLDDAKPSIVITKG 119 (251)
Q Consensus 63 ~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~----l~~~l~~~~~~~vi~~~ 119 (251)
.|.+|+|..+....+-++-+ +..+|..++.+......++ +...+.......++++.
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~-L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 358 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRF-VLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDG 358 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHH-HHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeC
Confidence 47788888864322222222 2367877655544443333 33445555566666654
No 243
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=52.26 E-value=1.5e+02 Score=25.42 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=46.3
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC--CCCCCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL--ETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i--~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
--.|-+|+.+++=..+...++..+..+|+-+... ||..+.++....|...+..+.-.
T Consensus 29 pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~ 87 (406)
T TIGR00936 29 PLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAW 87 (406)
T ss_pred CCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEe
Confidence 3358899999999999999999999999876655 77778888888888888876644
No 244
>PRK07867 acyl-CoA synthetase; Validated
Probab=52.20 E-value=1.7e+02 Score=25.83 Aligned_cols=78 Identities=10% Similarity=0.022 Sum_probs=50.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+..+. ...++.++|++....+-.-. .+..++..+..|+..+ +.+..+++.+...++..++..+.
T Consensus 171 ~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~-~~~~~~~~~~~~~i~~~~vt~~~ 246 (529)
T PRK07867 171 RCTHRKVASAGVMLA---QRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIA-LRRKFSASGFLPDVRRYGATYAN 246 (529)
T ss_pred EecHHHHHHHHHHHH---HhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEE-ecCCCCHHHHHHHHHHhCCeEEe
Confidence 578888865555443 23477888988776663322 2233444555676555 44567788899999999998886
Q ss_pred Eccc
Q psy4550 117 TKGE 120 (251)
Q Consensus 117 ~~~~ 120 (251)
..+.
T Consensus 247 ~~p~ 250 (529)
T PRK07867 247 YVGK 250 (529)
T ss_pred ccHH
Confidence 5443
No 245
>PRK07787 acyl-CoA synthetase; Validated
Probab=51.70 E-value=1.4e+02 Score=25.70 Aligned_cols=82 Identities=6% Similarity=0.043 Sum_probs=57.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+..+... .++.++|++...++- ...+...+++.+..|+.++... ..+++.+...++ .++..+.
T Consensus 147 ~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~-~~~t~~~ 221 (471)
T PRK07787 147 VLSRRAIAADLDALAEA---WQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTG-RPTPEAYAQALS-EGGTLYF 221 (471)
T ss_pred EEeHHHHHHHHHHHHHh---cCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecC-CCCHHHHHHHHh-hCceEEE
Confidence 47898888766555443 467788887666553 2234556788888998888664 457888999998 8888888
Q ss_pred Eccchhhhh
Q psy4550 117 TKGEYMDRL 125 (251)
Q Consensus 117 ~~~~~~~~~ 125 (251)
..+.....+
T Consensus 222 ~~P~~~~~l 230 (471)
T PRK07787 222 GVPTVWSRI 230 (471)
T ss_pred cchHHHHHH
Confidence 776654433
No 246
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=51.52 E-value=56 Score=27.19 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=44.8
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
|+..+++||++|+|..--..-.+...+|-.. |+-++.++ ..++-....++.+++.++...
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~---~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAIT---RSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEe---CChHHHHHHHHhCCcEEEEcC
Confidence 5667899999999999998888888777644 47777775 334445556677888888754
No 247
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=51.38 E-value=1.2e+02 Score=23.76 Aligned_cols=65 Identities=22% Similarity=0.153 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC---CeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG---GGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G---~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.++...+.+.| .|.|.+-.+.+....-.+--+...| ..-+.++|..+.+.+..++...+--+|.+
T Consensus 81 ~~~i~~~~~aG---ad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMt 148 (228)
T PRK08091 81 FEVAKACVAAG---ADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILT 148 (228)
T ss_pred HHHHHHHHHhC---CCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEE
Confidence 34445555555 5788888887666556666677777 47788899999999999998777656555
No 248
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=51.16 E-value=1.6e+02 Score=25.92 Aligned_cols=76 Identities=11% Similarity=-0.001 Sum_probs=51.1
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCC-CC--CHHHHHHHHhhcCcc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCI-VGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLET-SY--PPALLESVLDDAKPS 113 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~-~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~-~~--~~~~l~~~l~~~~~~ 113 (251)
.+|++.+...+..+... .++. ++|++....|-.-. .+..+++.+..|+..+..++ .. .+..+...++..++.
T Consensus 171 ~~th~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t 247 (525)
T PRK05851 171 ILSPGAVLSNLRGLNAR---VGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRAT 247 (525)
T ss_pred EecHHHHHHHHHHHHHH---hCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCe
Confidence 58999888776655433 4666 78988887774422 23356677888888776543 12 456788888888888
Q ss_pred EEEE
Q psy4550 114 IVIT 117 (251)
Q Consensus 114 ~vi~ 117 (251)
++.+
T Consensus 248 ~~~~ 251 (525)
T PRK05851 248 LTAA 251 (525)
T ss_pred EEeC
Confidence 6644
No 249
>PF02073 Peptidase_M29: Thermophilic metalloprotease (M29); InterPro: IPR000787 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M29 (aminopeptidase T family, clan M-). The protein fold of the peptidase domain and the active site residues are not known for any members of the thermophilic metallo-aminopeptidases family.; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 2AYI_D 1ZJC_A.
Probab=50.63 E-value=68 Score=27.41 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCEEEEEccCC-HHHH-HHHHHHHHHCC
Q psy4550 45 LDEWTDIVGTYLINQ--GCIVGSTVGVLMERC-LEWT-ISYIAIHKAGG 89 (251)
Q Consensus 45 l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~-~~~~-~~~~a~~~~G~ 89 (251)
+..+.+++|..|.+. ++++|+.|.|..+.. .+++ .+.-.+..+|+
T Consensus 3 ~~~~l~kyA~llV~~glnvq~Gq~v~I~~~~~~~~l~r~l~~~ay~aGA 51 (398)
T PF02073_consen 3 FDERLEKYAELLVKYGLNVQPGQKVLIRAPVEAAPLARALVEEAYEAGA 51 (398)
T ss_dssp HHHHHHHHHHHHHHTTT---TT-EEEEEEETT-HHHHHHHHHHHHHTT-
T ss_pred chHHHHHHHHHHHHhccCCCCCCEEEEEecccHHHHHHHHHHHHHHcCC
Confidence 567888999998875 789999999999955 3333 35667888898
No 250
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=50.61 E-value=1.8e+02 Score=25.64 Aligned_cols=81 Identities=6% Similarity=-0.011 Sum_probs=56.6
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH--HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL--EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|.+.+...+.... ...+++.+|++...++-.- .++..++..+..|...+. .+..++..+...+++.++.++.
T Consensus 214 ~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~-~~~~~~~~~~~~l~~~~vt~~~ 289 (538)
T TIGR03208 214 MHTANTLFSNIHPYA---ERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVL-QDIWNPARAAELIRETGVTFTM 289 (538)
T ss_pred EeehHHHHHHHHHHH---hhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEe-cCccCHHHHHHHHHHhCCeEEe
Confidence 478877766555443 3346788999888887543 234456677777877664 4567889999999999999988
Q ss_pred Eccchhh
Q psy4550 117 TKGEYMD 123 (251)
Q Consensus 117 ~~~~~~~ 123 (251)
..+....
T Consensus 290 ~~p~~~~ 296 (538)
T TIGR03208 290 ASTPFLT 296 (538)
T ss_pred cCHHHHH
Confidence 7665443
No 251
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=50.43 E-value=1.5e+02 Score=24.92 Aligned_cols=90 Identities=10% Similarity=-0.084 Sum_probs=56.0
Q ss_pred CCceEEEecCCC--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHH
Q psy4550 27 PDKIAVVDHDGR--SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLE 104 (251)
Q Consensus 27 ~~~~a~~~~~~~--~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~ 104 (251)
+.++.+.. ++. +=|+++ +-+......+.+.|..+ -.+....+---..+.++|...|..+..+-|...+..-.
T Consensus 14 g~~i~~K~-E~~~ptgS~K~--R~a~~~i~~~~~~~~~~---~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~ 87 (380)
T TIGR01127 14 GSEVYLKL-ENLQKTGSFKI--RGALNKIANLSEDQRQR---GVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKV 87 (380)
T ss_pred CCeEEEEe-cCCCCCCCcHH--HHHHHHHHhcchhccCC---EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHH
Confidence 45677764 332 334433 22333333344444332 23444445555677788899998877777777777788
Q ss_pred HHHhhcCccEEEEccchh
Q psy4550 105 SVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 105 ~~l~~~~~~~vi~~~~~~ 122 (251)
..++..+++++++...+.
T Consensus 88 ~~~~~~GA~V~~~~~~~~ 105 (380)
T TIGR01127 88 KATKSYGAEVILHGDDYD 105 (380)
T ss_pred HHHHHCCCEEEEECCCHH
Confidence 889999999999876543
No 252
>KOG1250|consensus
Probab=50.10 E-value=1.4e+02 Score=25.49 Aligned_cols=76 Identities=9% Similarity=-0.016 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 46 DEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 46 ~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
.+-+..+...|.+.+.++| .++--..|+ ...+.++++.+|+.+..+=|..++..-...++..++++++..+...+.
T Consensus 98 ~RGa~~~~~kla~~~~~~g-ViasSaGNh--a~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~~~deA 173 (457)
T KOG1250|consen 98 IRGAGNALQKLAKQQKKAG-VIASSAGNH--AQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGEDWDEA 173 (457)
T ss_pred hhhHHHHHHHHHHhhhcCc-eEEecCccH--HHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecccHHHH
Confidence 3444444444444443332 344444444 466788999999999989999999999999999999999998765443
No 253
>PRK07798 acyl-CoA synthetase; Validated
Probab=49.91 E-value=70 Score=27.91 Aligned_cols=69 Identities=10% Similarity=-0.127 Sum_probs=49.1
Q ss_pred EEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 179 IVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
-.+|...+...+..++. ..++.++|++.... -+...+++++..|+..+..+. .+.+..+.+.+++.++.
T Consensus 27 ~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~--~~~~~~l~~~l~~~~~~ 102 (533)
T PRK07798 27 RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNY--RYVEDELRYLLDDSDAV 102 (533)
T ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCc--CCCHHHHHHHHhhcCCC
Confidence 46888888766554443 45788888875533 345567889999999998886 37788888888776543
No 254
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=49.79 E-value=1.4e+02 Score=27.98 Aligned_cols=97 Identities=13% Similarity=0.021 Sum_probs=61.6
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~ 96 (251)
.|+.+|.+- ..| -.+|.+.+...+..+..... .+..++|++..++|=+ +--....+.++..|+..+..+.
T Consensus 302 ~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~-~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~ 380 (746)
T PTZ00342 302 DPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSI-FKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSK 380 (746)
T ss_pred CccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhccc-ccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence 356666653 222 35899998877765543211 1223457777777733 2222345667788888776543
Q ss_pred CCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 97 SYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
++..+...++..++++++.-+...+++
T Consensus 381 --~~~~l~~di~~~~pT~~~~VP~v~~~i 407 (746)
T PTZ00342 381 --DINYFSKDIYNSKGNILAGVPKVFNRI 407 (746)
T ss_pred --CHHHHHHHHHHhCCcEEEchHHHHHHH
Confidence 678889999999999999877665544
No 255
>PRK12483 threonine dehydratase; Reviewed
Probab=49.62 E-value=1.9e+02 Score=25.79 Aligned_cols=55 Identities=11% Similarity=0.028 Sum_probs=41.2
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
+.+..+=-...+.++|..+|..+..+=|...+..-...++..+++++++.+.+.+
T Consensus 89 V~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~~d~ 143 (521)
T PRK12483 89 ITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGESFPD 143 (521)
T ss_pred EEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 3444444556677788899988887777777777778899999999999766533
No 256
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=49.30 E-value=51 Score=21.01 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=18.4
Q ss_pred eeHHHHHH-HHHHHHHHHHhcCCC
Q psy4550 40 ITFKQLDE-WTDIVGTYLINQGCI 62 (251)
Q Consensus 40 ~T~~~l~~-~~~~~a~~L~~~g~~ 62 (251)
++-.|+.+ +..+++..|+++|++
T Consensus 31 lDg~efl~eri~~L~~~L~kRgv~ 54 (86)
T PF09153_consen 31 LDGEEFLRERISRLIEFLKKRGVS 54 (86)
T ss_dssp SSHHHHHH-HHHHHHHHHHHTT--
T ss_pred eccHHHHHHHHHHHHHHHHhcCce
Confidence 55678888 999999999999754
No 257
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=49.22 E-value=1.2e+02 Score=23.48 Aligned_cols=93 Identities=9% Similarity=-0.112 Sum_probs=57.9
Q ss_pred CCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHH
Q psy4550 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESV 106 (251)
Q Consensus 27 ~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~ 106 (251)
+.++.+.. ++..-|.+-=.+.+..+...+.+.|..+++.|.. ...+---..+.++|...|..++.+-|...+..-...
T Consensus 14 ~~~l~~K~-e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~-~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~ 91 (244)
T cd00640 14 GANIYLKL-EFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIE-STGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQ 91 (244)
T ss_pred CCEEEEEe-cccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 34566653 3333332222223333344455555334555544 444555677778888899988888777778888888
Q ss_pred HhhcCccEEEEccch
Q psy4550 107 LDDAKPSIVITKGEY 121 (251)
Q Consensus 107 l~~~~~~~vi~~~~~ 121 (251)
++..+++++.++..+
T Consensus 92 ~~~~Ga~v~~~~~~~ 106 (244)
T cd00640 92 MRALGAEVVLVPGDF 106 (244)
T ss_pred HHHCCCEEEEECCCH
Confidence 999999999998764
No 258
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=48.91 E-value=58 Score=22.88 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCCCEEEEEcc--CCHHHHHHHHHHHHHCCeEeeC
Q psy4550 43 KQLDEWTDIVGTYLINQ-GCIVGSTVGVLME--RCLEWTISYIAIHKAGGGYLPL 94 (251)
Q Consensus 43 ~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~--~~~~~~~~~~a~~~~G~~~v~i 94 (251)
..-.++-.-++..+.+. .+++||.+.++.. +++..+-++..+...|+..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 82 SNDLEYDEGFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp HHHTTGGGTHHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred hcccchhhHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 33334444566666553 6799999888876 5678888888889999887754
No 259
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=48.90 E-value=52 Score=20.30 Aligned_cols=46 Identities=11% Similarity=0.275 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHHhCCC-------ceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 11 AEGALHYMFRNQAKRTPD-------KIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~-------~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
...|+.+++.....++|. ..++ ..+++.++ .+.-++.||+|+++-|
T Consensus 24 ~~~tv~~ll~~l~~~~~~~~~~~~~~~~v-~vNg~~v~---------------~~~~l~~gD~v~i~pp 76 (80)
T cd00754 24 EGATVGELLDALEARYPGLLEELLARVRI-AVNGEYVR---------------LDTPLKDGDEVAIIPP 76 (80)
T ss_pred CCCcHHHHHHHHHHHCchHHHhhhhcEEE-EECCeEcC---------------CCcccCCCCEEEEeCC
Confidence 356888888888777764 2222 34665544 2235788999998866
No 260
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=48.86 E-value=84 Score=27.41 Aligned_cols=68 Identities=9% Similarity=-0.065 Sum_probs=48.6
Q ss_pred EeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 180 VCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.+|...+...+..++. ..++.++|++.... .+...+++++..|+..+..+. .+.+..+...+++.+++
T Consensus 37 ~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~~--~~~~~~l~~~l~~~~~~ 111 (517)
T PRK08008 37 RYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINA--RLLREESAWILQNSQAS 111 (517)
T ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcCc--ccCHHHHHHHHHhcCce
Confidence 4788887766655554 45888888876533 345567889999999888876 47788888887776643
No 261
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=48.22 E-value=1.8e+02 Score=25.11 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=25.1
Q ss_pred CCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCC----HHHHHHHHhh
Q psy4550 63 VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP----PALLESVLDD 109 (251)
Q Consensus 63 ~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~----~~~l~~~l~~ 109 (251)
.|.+|+|+......+-.+-+ +..+|..++.+-.... .+++...++.
T Consensus 302 ~gkrv~i~g~~~~~~~la~~-L~elGm~v~~~~~~~~~~~~~~~~~~~l~~ 351 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSF-LLELGMEPVHVLTGNGGKRFEKEMQALLDA 351 (435)
T ss_pred CCCEEEEEcChHHHHHHHHH-HHHCCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence 47889888865443333222 3378887754432222 3445555655
No 262
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=47.95 E-value=50 Score=18.55 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=34.2
Q ss_pred CCCcCchhhhHHHHHHHHHHhCCCceEEEecCCC---eeeHHHHHHHH
Q psy4550 5 NLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGR---SITFKQLDEWT 49 (251)
Q Consensus 5 ~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~---~~T~~~l~~~~ 49 (251)
++..++...++.+.+....+..-....++|.+++ .+|.+++.+..
T Consensus 8 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 8 PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5566777889999999998888777888765654 47888887654
No 263
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=47.76 E-value=88 Score=29.04 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=42.8
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC---------C-----HHHHHHHHhhc-Ccc----EEEEccch
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY---------P-----PALLESVLDDA-KPS----IVITKGEY 121 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~---------~-----~~~l~~~l~~~-~~~----~vi~~~~~ 121 (251)
+++||.| ++-+|+-..+.- |+..+|+.++-+.|.. + ++.+...++.. +++ ++|+.+.+
T Consensus 232 ~~~Gd~V-LvdRN~HKSv~h--aLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY 308 (714)
T PRK15400 232 APAGSTV-LIDRNCHKSLTH--LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY 308 (714)
T ss_pred cCCCCEE-EeecccHHHHHH--HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC
Confidence 6789977 578888777655 9999999999998753 3 67788887665 233 77776654
No 264
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=47.68 E-value=1e+02 Score=27.91 Aligned_cols=85 Identities=15% Similarity=0.056 Sum_probs=57.1
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH---HhCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCc
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH---RAYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDE 231 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~ 231 (251)
.++.++++.. +..+| ..-.+|.+.|...+..++ ...|+.++|++...+ -+...+++++..|+..+....
T Consensus 66 ~p~~~A~~~~-~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~- 141 (629)
T PRK10524 66 RPEQLALIAV-STETD--EERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFG- 141 (629)
T ss_pred CCCCeEEEEE-cCCCC--ceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCC-
Confidence 4567776543 22222 234678888876654444 355889999987654 345678899999998888776
Q ss_pred cccCchHHHhhhhcccc
Q psy4550 232 VIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~v 248 (251)
.+.+..+...++..++
T Consensus 142 -~~~~~~l~~~l~~~~~ 157 (629)
T PRK10524 142 -GFASHSLAARIDDAKP 157 (629)
T ss_pred -CCCHHHHHHHHHhcCC
Confidence 3788888888776654
No 265
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=47.39 E-value=35 Score=21.10 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.6
Q ss_pred cCCCeeeHHHHHHHHHHHHHHHHhcCCC
Q psy4550 35 HDGRSITFKQLDEWTDIVGTYLINQGCI 62 (251)
Q Consensus 35 ~~~~~~T~~~l~~~~~~~a~~L~~~g~~ 62 (251)
..|+.+|..++.+.++++.+.+++.|.-
T Consensus 26 ~~g~~l~~~~l~~~~~~l~~~y~~~GY~ 53 (76)
T PF08479_consen 26 YIGRCLTLADLQQLADALTNYYREKGYI 53 (76)
T ss_dssp GTTSBB-HHHHHHHHHHHHHHHHHTT-T
T ss_pred hcCCCcCHHHHHHHHHHHHHHHHHcCce
Confidence 4578999999999999999999999854
No 266
>PRK05939 hypothetical protein; Provisional
Probab=47.35 E-value=1.1e+02 Score=26.03 Aligned_cols=56 Identities=5% Similarity=-0.024 Sum_probs=33.0
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+.-..-......+-.+.+.|+.+..++.. ..+++...++ -+.++|+..
T Consensus 83 l~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-d~e~l~~~l~-~~tklV~ve 138 (397)
T PRK05939 83 LRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-DVQNVAAAIR-PNTRMVFVE 138 (397)
T ss_pred cCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC-CHHHHHHhCC-CCCeEEEEE
Confidence 6788887664432222222333455678877777653 5677777774 356666664
No 267
>KOG1138|consensus
Probab=47.10 E-value=38 Score=29.62 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=46.4
Q ss_pred HHhcCCCCCCEEEEEccC-CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhc
Q psy4550 56 LINQGCIVGSTVGVLMER-CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~-~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (251)
+.-.|..+...|.+.-|+ +...+.+=+-=+...++..|++.+..-.++.+++.+.+++++++.+++.+....
T Consensus 410 ~e~~g~sp~NsvI~tdpD~~~~~vl~PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vlcpeaytqp~~~ 482 (653)
T KOG1138|consen 410 LECWGLSPKNSVIFTDPDFSYLLVLAPFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVLCPEAYTQPIPL 482 (653)
T ss_pred HHHhcCCCCCceEEeCCCCchhhhhcCCccccceeEeccccccccHHHHHHHHHHhCCCEEEChhhhcCCCCc
Confidence 333455544445444442 222222223333446778888888889999999999999999998887665443
No 268
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=47.04 E-value=1.8e+02 Score=25.78 Aligned_cols=82 Identities=7% Similarity=0.017 Sum_probs=57.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|...+....... ....++++++++...++-.-. .+..+++.+..|+.+++.+ ..+++.+...+++.+++.+..
T Consensus 199 ~~t~~~~~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~ 274 (542)
T PRK06155 199 CCPHAQFYWWGRNS---AEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEP-RFSASGFWPAVRRHGATVTYL 274 (542)
T ss_pred EEEHHHHHHHHHHH---HHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeC-CCCHHHHHHHHHHhCCcEEEc
Confidence 37888876554333 344578899998887774322 2335678888898877654 567899999999999999887
Q ss_pred ccchhhh
Q psy4550 118 KGEYMDR 124 (251)
Q Consensus 118 ~~~~~~~ 124 (251)
.......
T Consensus 275 ~p~~~~~ 281 (542)
T PRK06155 275 LGAMVSI 281 (542)
T ss_pred hHHHHHH
Confidence 7654433
No 269
>KOG1252|consensus
Probab=47.00 E-value=1.7e+02 Score=24.42 Aligned_cols=61 Identities=8% Similarity=-0.159 Sum_probs=50.6
Q ss_pred CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 60 GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
-+.||..+.+-.-++=--+.+.+.|...|..++.+=|..-..+-..+|+..++.+|.++.+
T Consensus 99 ~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a 159 (362)
T KOG1252|consen 99 LITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPA 159 (362)
T ss_pred CccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChH
Confidence 4788988877776666667788888889998888888777788888999999999999865
No 270
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=46.93 E-value=1.8e+02 Score=25.63 Aligned_cols=84 Identities=14% Similarity=0.026 Sum_probs=54.0
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCC-CCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGC-IVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLE-TSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~-~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~-~~~~~~~l~~~l~~~~~~~v 115 (251)
.+|++.+...+..+. ...++ ..++++....+-. .-.+..+++.+..|+..+..+ ...+++.+...++..+++.+
T Consensus 193 ~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~ 269 (542)
T PRK07786 193 VLTHANLTGQAMTCL---RTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGI 269 (542)
T ss_pred hhhHHHHHHHHHHHH---HhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEE
Confidence 478888766655443 33355 4455555444422 112345677788888776543 24578999999999999999
Q ss_pred EEccchhhhh
Q psy4550 116 ITKGEYMDRL 125 (251)
Q Consensus 116 i~~~~~~~~~ 125 (251)
...+.....+
T Consensus 270 ~~~P~~l~~l 279 (542)
T PRK07786 270 FLVPAQWQAV 279 (542)
T ss_pred EehHHHHHHH
Confidence 9877665443
No 271
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=46.93 E-value=62 Score=28.63 Aligned_cols=68 Identities=10% Similarity=0.016 Sum_probs=48.8
Q ss_pred EEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 179 IVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
..+|+..+...+..++. ..++.++|++.... .+...+++++..|+..+..+. .+.+.++...+++.+.
T Consensus 47 ~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~~--~~~~~~~~~~~~~~~~ 121 (557)
T PRK07059 47 KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNP--LYTPRELEHQLKDSGA 121 (557)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccCc--ccCHHHHHHHHHccCc
Confidence 46899988776655554 34788889876543 345667899999999998876 3677777777776543
No 272
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=46.92 E-value=38 Score=24.60 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=25.2
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~ 74 (251)
-+||.|+.+.++++|..+.+.| + -+.|.-.+..+
T Consensus 9 ~is~~~i~~~i~~la~~I~~~~-~-~d~vvgv~~GG 42 (156)
T PRK09177 9 PVSWDQLHRDARALAWRLLPAG-Q-WKGIIAVTRGG 42 (156)
T ss_pred EcCHHHHHHHHHHHHHHHHhhC-C-CCEEEEEecCC
Confidence 4899999999999999998875 3 25554444444
No 273
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=46.88 E-value=87 Score=25.68 Aligned_cols=89 Identities=11% Similarity=0.001 Sum_probs=53.2
Q ss_pred CceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHH
Q psy4550 28 DKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESV 106 (251)
Q Consensus 28 ~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~ 106 (251)
.++.+...+ +-+=|++ .+.+..+...+.+.| ++.|... ..+-.-..+.++|...|..+..+-|...+..-...
T Consensus 38 ~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g---~~~vv~~-SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~ 111 (324)
T cd01563 38 KNLYVKDEGLNPTGSFK--DRGMTVAVSKAKELG---VKAVACA-STGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQ 111 (324)
T ss_pred CceEEEecCCCCcccHH--HhhHHHHHHHHHHcC---CCEEEEe-CCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHH
Confidence 457776422 2223333 233333444444445 4444443 33334445557888889877776666666777888
Q ss_pred HhhcCccEEEEccchh
Q psy4550 107 LDDAKPSIVITKGEYM 122 (251)
Q Consensus 107 l~~~~~~~vi~~~~~~ 122 (251)
++..++++++++....
T Consensus 112 l~~~GA~Vi~~~~~~~ 127 (324)
T cd01563 112 ALAYGATVLAVEGNFD 127 (324)
T ss_pred HHHcCCEEEEECCcHH
Confidence 8999999999986543
No 274
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=46.78 E-value=1.9e+02 Score=28.04 Aligned_cols=70 Identities=7% Similarity=-0.021 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH-HHHCCeEeeCCCCCCHHHHHHHHhhc-----CccEEEEccc
Q psy4550 48 WTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI-HKAGGGYLPLETSYPPALLESVLDDA-----KPSIVITKGE 120 (251)
Q Consensus 48 ~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~-~~~G~~~v~i~~~~~~~~l~~~l~~~-----~~~~vi~~~~ 120 (251)
++..+...|+.. .+++|.|++......-.+.-.+ ...|..++.++...+..+-...++.. ++.++|+++.
T Consensus 480 Ki~~L~~~L~~~---~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 480 RVEWLIDFLKSH---RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred HHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 334455555543 3778888887654444444444 24588888898888887777666654 4678887754
No 275
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=46.53 E-value=1.3e+02 Score=27.57 Aligned_cols=64 Identities=8% Similarity=0.043 Sum_probs=45.1
Q ss_pred cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC--CCC-CHHHHHHHHhhcCccEEEEccchh
Q psy4550 59 QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE--TSY-PPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~--~~~-~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
.+++++|++....+-+......+++.+..|+..+..+ |.. .+..+..+++..+++++.+.....
T Consensus 301 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~ 367 (652)
T TIGR01217 301 CDLGPGDRLFYYTTTGWMMWNWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYV 367 (652)
T ss_pred cCCCCCcEEEEeCCcchhhhHHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHH
Confidence 4789999888776655333333557888899888764 222 567888999999999876655443
No 276
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=46.32 E-value=69 Score=24.09 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=19.4
Q ss_pred eeeHHHHHHHHHHHHHHHHhc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~ 59 (251)
-+||.|+.+++.++|..+.+.
T Consensus 11 lis~~~I~~~i~~lA~~I~~~ 31 (189)
T PLN02238 11 LWTAEDISARVAELAAQIASD 31 (189)
T ss_pred EcCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999885
No 277
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.30 E-value=92 Score=25.13 Aligned_cols=81 Identities=5% Similarity=0.078 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCHH---HHHHHHhhcCccEEE
Q psy4550 42 FKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPPA---LLESVLDDAKPSIVI 116 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~~---~l~~~l~~~~~~~vi 116 (251)
+.++.++...+-..+++.--....+..+...+...++.-.+++-..+.. -+.+ ..++. ++...++..++++||
T Consensus 156 ~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~H~af~Yl~~~~gl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~If 233 (286)
T cd01019 156 LEAFNARLAELDATIKERLAPVKTKPFFVFHDAYGYFEKRYGLTQAGVF--TIDPEIDPGAKRLAKIRKEIKEKGATCVF 233 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCeEEEecccHHHHHHHcCCceeeee--cCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 4444444444444444421112355667777788887766655433321 1222 33455 455566788999999
Q ss_pred Eccchhhh
Q psy4550 117 TKGEYMDR 124 (251)
Q Consensus 117 ~~~~~~~~ 124 (251)
+++....+
T Consensus 234 ~e~~~~~~ 241 (286)
T cd01019 234 AEPQFHPK 241 (286)
T ss_pred ecCCCChH
Confidence 98776544
No 278
>PF07538 ChW: Clostridial hydrophobic W; InterPro: IPR006637 This hydrophobic repeat is found in a number of Chlostridium proteins. It contains a conserved tryptophan residue.
Probab=46.19 E-value=15 Score=19.26 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.5
Q ss_pred ccCCCCCCceEE
Q psy4550 169 SSGTTGKPKGIV 180 (251)
Q Consensus 169 TSGtTG~pK~v~ 180 (251)
++||+|..|.+.
T Consensus 16 ~aGt~G~~~rlE 27 (36)
T PF07538_consen 16 TAGTTGQGLRLE 27 (36)
T ss_pred ecccCCCCcEEE
Confidence 579999988764
No 279
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=45.92 E-value=2.2e+02 Score=26.16 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=60.2
Q ss_pred CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeC
Q psy4550 27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLIN--QGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPL 94 (251)
Q Consensus 27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~--~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i 94 (251)
|+.++.+- ..| -.+|.+.+...+..+...... .++.++|++..++|-+ .+.... +.++..|+..+..
T Consensus 219 ~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~-~~~l~~G~~i~~~ 297 (660)
T PLN02430 219 PLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIE-EYFFRKGASVGYY 297 (660)
T ss_pred cCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHH-HHHHHcCCEEEEe
Confidence 56666653 222 358998887766555433222 2567889888887743 222333 3345677766544
Q ss_pred CCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 95 ETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.. ....+...++..++++++.-+...+++
T Consensus 298 ~~--~~~~l~~~l~~~~pt~~~~vP~~~~~l 326 (660)
T PLN02430 298 HG--DLNALRDDLMELKPTLLAGVPRVFERI 326 (660)
T ss_pred CC--ChhhHHHHHHHhCCcEEEecHHHHHHH
Confidence 32 566788899999999999877665543
No 280
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=45.09 E-value=84 Score=25.18 Aligned_cols=81 Identities=11% Similarity=0.009 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC--CCH---HHHHHHHhhcCccEE
Q psy4550 43 KQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS--YPP---ALLESVLDDAKPSIV 115 (251)
Q Consensus 43 ~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~--~~~---~~l~~~l~~~~~~~v 115 (251)
..+.++...+-..+++. .+..+.++.+..++...++.-.+++-..+..- +++. -++ .++...++..++++|
T Consensus 137 ~~~~~~L~~l~~~~~~~l~~~~~~~~~~~t~H~af~Y~~~~ygl~~~~~~~--~~~~~eps~~~l~~l~~~ik~~~v~~i 214 (276)
T cd01016 137 EAYVEELDSLDAYAKKKIAEIPEQQRVLVTAHDAFGYFGRAYGFEVKGLQG--ISTDSEAGLRDINELVDLIVERKIKAI 214 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchhcCeEEEecCcHHHHHHHcCCeEecCcC--CCcccCCCHHHHHHHHHHHHHcCCCEE
Confidence 33444444444444332 12334577788888888888777666555321 2222 234 455666778899999
Q ss_pred EEccchhhhh
Q psy4550 116 ITKGEYMDRL 125 (251)
Q Consensus 116 i~~~~~~~~~ 125 (251)
|+++....+.
T Consensus 215 f~e~~~~~~~ 224 (276)
T cd01016 215 FVESSVNQKS 224 (276)
T ss_pred EEeCCCCHHH
Confidence 9988766543
No 281
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=45.03 E-value=88 Score=21.10 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=22.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCC
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGS 65 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~ 65 (251)
.++|.++.+.++.+|..|.+.+.....
T Consensus 4 ~~~~~~~~~~~~~la~~i~~~~~~~~~ 30 (125)
T PF00156_consen 4 ILSPEQIEALAERLAEQIKESGFDFDV 30 (125)
T ss_dssp EEBHHHHHHHHHHHHHHHHHHTTTSSE
T ss_pred EEcHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 479999999999999999998755433
No 282
>PRK08813 threonine dehydratase; Provisional
Probab=44.87 E-value=1.9e+02 Score=24.29 Aligned_cols=69 Identities=6% Similarity=-0.158 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
.....+.+.|...| .+....+---..+.++|...|..+..+-|...+..-...++.+++.++.+...+.
T Consensus 70 ~~l~~a~~~~~~~~---VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~~~ 138 (349)
T PRK08813 70 NALLAGLERGDERP---VICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGNSYD 138 (349)
T ss_pred HHHHHHHHcCCCCe---EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 33334445554333 3445555556777888999998776666666666777778999999999976543
No 283
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=44.55 E-value=1.2e+02 Score=24.38 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=35.6
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC----------CCCHHHHHHHHhh-cCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET----------SYPPALLESVLDD-AKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~----------~~~~~~l~~~l~~-~~~~~vi~~ 118 (251)
+++||+|.+.-+.. ...+-++...|+.++.+++ ..+.+++...++. .++++++..
T Consensus 96 ~~~gd~Vlv~~~~h---~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~ 161 (294)
T cd00615 96 CGPGDKILIDRNCH---KSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVIT 161 (294)
T ss_pred CCCCCEEEEeCCch---HHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEE
Confidence 56899887765433 3334556678887776654 2467888888865 456665543
No 284
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=44.46 E-value=1.7e+02 Score=23.83 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=49.5
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH----------------------------HHHHHHHHHHHCCeEe
Q psy4550 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE----------------------------WTISYIAIHKAGGGYL 92 (251)
Q Consensus 41 T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~----------------------------~~~~~~a~~~~G~~~v 92 (251)
.+.+..+....+..+++++|+. ..|.|.+-+.-. ..+..+|+++.|+.++
T Consensus 127 ~~~~~e~~~~DI~~f~~~~~~d--~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~~~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 127 KREQVEQIREDIRDFKKENGLD--RVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPEISASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-S--CEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TTHHHHHHHHHHHHHTTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhCCC--cEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCcCChHHHHHHHHHHCCCCeE
Confidence 3555566667788888888864 456665554432 3456788899999999
Q ss_pred eCCCCCCH--HHHHHHHhhcCccEEEEccc
Q psy4550 93 PLETSYPP--ALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 93 ~i~~~~~~--~~l~~~l~~~~~~~vi~~~~ 120 (251)
--.|.... ..+..+.++.+. .+..++
T Consensus 205 N~tP~~~a~~P~l~ela~~~gv--pi~GdD 232 (295)
T PF07994_consen 205 NGTPSNIADDPALVELAEEKGV--PIAGDD 232 (295)
T ss_dssp E-SSSTTTTSHHHHHHHHHHTE--EEEESS
T ss_pred eccCccccCCHHHHHHHHHcCC--Ceecch
Confidence 87776654 788888887665 344444
No 285
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=44.39 E-value=30 Score=20.32 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.1
Q ss_pred HHHHHhcCCCCCCEEEEEccCC
Q psy4550 53 GTYLINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 53 a~~L~~~g~~~g~~V~l~~~~~ 74 (251)
..||++.|+..|+.|-|-..++
T Consensus 30 G~WL~~aGF~~G~~v~V~v~~g 51 (57)
T PF08845_consen 30 GKWLEEAGFTIGDPVKVRVMPG 51 (57)
T ss_pred hhhhHHhCCCCCCEEEEEEECC
Confidence 4789999999999998876543
No 286
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=44.36 E-value=1.6e+02 Score=24.87 Aligned_cols=56 Identities=14% Similarity=-0.021 Sum_probs=27.9
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++||.|.+..+.-......+-.....+.+.+...+....+.+...++. ++++|+.
T Consensus 87 l~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l 142 (382)
T TIGR02080 87 LGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLI 142 (382)
T ss_pred cCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEE
Confidence 5678877655554433333333333444333333233456666666643 4566664
No 287
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=44.12 E-value=1.7e+02 Score=25.06 Aligned_cols=57 Identities=9% Similarity=-0.143 Sum_probs=44.3
Q ss_pred EEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh
Q psy4550 67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 67 V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
-.+....+=--..+.+++...|..++.+-|...+.+-...++..+++++.++....+
T Consensus 136 ~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~~~~ 192 (404)
T cd06447 136 SIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETDYSK 192 (404)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCCHHH
Confidence 345555555567788899999998877777778888888999999999999865443
No 288
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=44.03 E-value=1.4e+02 Score=27.12 Aligned_cols=85 Identities=11% Similarity=-0.001 Sum_probs=55.8
Q ss_pred eeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCC---CCCHHHHHHHHhhcCc
Q psy4550 39 SITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLET---SYPPALLESVLDDAKP 112 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~ 112 (251)
.+|.+.+... .+..+.. .+++++|++....+-+-. +...+++.+..|+..+..+. ...+..+..++++.++
T Consensus 251 ~~sh~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~v 327 (628)
T TIGR02316 251 QRDVGGYAVA---LALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGV 327 (628)
T ss_pred EECCcHHHHH---HHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCC
Confidence 3666654322 2223333 478899988776664322 23457788899988776542 2357888999999999
Q ss_pred cEEEEccchhhhhh
Q psy4550 113 SIVITKGEYMDRLE 126 (251)
Q Consensus 113 ~~vi~~~~~~~~~~ 126 (251)
+++.+.+.....+.
T Consensus 328 t~~~~~P~~~~~l~ 341 (628)
T TIGR02316 328 RTMFSAPTAIRVLK 341 (628)
T ss_pred eEEEeCHHHHHHHH
Confidence 99999877655443
No 289
>TIGR00623 sula cell division inhibitor SulA. All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.
Probab=43.93 E-value=1e+02 Score=22.70 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=14.8
Q ss_pred HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 55 YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 55 ~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
+|.+.|+.....+.|...+..+.+.+.-=|++.|
T Consensus 76 ~L~~~Gl~l~rvlli~~~~~~d~lwa~EQaLrSG 109 (168)
T TIGR00623 76 WVQSSGLPLTKVMQISQLSPCNTVESMIRALRTG 109 (168)
T ss_pred HHHHcCCChhHEEEEecCCchhHHHHHHHHHHhC
Confidence 3444454443333333334444444444444444
No 290
>PTZ00297 pantothenate kinase; Provisional
Probab=43.88 E-value=1.5e+02 Score=30.28 Aligned_cols=85 Identities=8% Similarity=0.023 Sum_probs=60.8
Q ss_pred CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC-CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER-CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 38 ~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~-~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
-.+|.+.+...+..+.......+..++|++..++|= ++.-....++++..|+... ..+++.+...++..+|++++
T Consensus 619 VmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~----~~d~~~lledL~~~rPTv~~ 694 (1452)
T PTZ00297 619 VRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVA----TVDAAHLQRAFVKFQPTILV 694 (1452)
T ss_pred EEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEE----eCCHHHHHHHHHHHCCEEEE
Confidence 359999999998887653211235678998888883 3222345677778887764 24678899999999999999
Q ss_pred Eccchhhhhh
Q psy4550 117 TKGEYMDRLE 126 (251)
Q Consensus 117 ~~~~~~~~~~ 126 (251)
.-+...+++.
T Consensus 695 ~VPrv~ekI~ 704 (1452)
T PTZ00297 695 AAPSLFSTSR 704 (1452)
T ss_pred ecHHHHHHHH
Confidence 9887666543
No 291
>PRK08526 threonine dehydratase; Provisional
Probab=43.87 E-value=2.1e+02 Score=24.54 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=39.8
Q ss_pred EccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh
Q psy4550 70 LMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 70 ~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
....+---..+.++|...|..+..+-|...+..-...++..+++++++.+.+.+
T Consensus 73 ~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~~~~~ 126 (403)
T PRK08526 73 AASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNYDE 126 (403)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECCCHHH
Confidence 344444556677788999987777777666666667789999999999765443
No 292
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=43.84 E-value=1.4e+02 Score=24.15 Aligned_cols=54 Identities=11% Similarity=-0.076 Sum_probs=40.2
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
+....+---..+.++|...|..++.+-|...+.+....++..++++++++..+.
T Consensus 69 v~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~~~ 122 (304)
T cd01562 69 VAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGEDFD 122 (304)
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHH
Confidence 333455566677778888998777776766667778899999999999987543
No 293
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=43.43 E-value=2e+02 Score=25.08 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=46.0
Q ss_pred hcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 58 NQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 58 ~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
..++.+++++....+-.. ......+..+..|+..+.. +..+++.+...++..++++++..+.....+
T Consensus 190 ~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 257 (509)
T PRK12406 190 IYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQ-PRFDPEELLQLIERHRITHMHMVPTMFIRL 257 (509)
T ss_pred hcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEc-cCCCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence 457889998887766332 1122333445667776654 457889999999999999999877665433
No 294
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=43.33 E-value=1.4e+02 Score=25.28 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=30.9
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+........+-.+...|+.+..+++ ..+++...++..+.++|+.+
T Consensus 89 l~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~--d~~~l~~~i~~~~tklV~ie 144 (385)
T PRK08574 89 LKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP--STEDIIEAIKEGRTKLVFIE 144 (385)
T ss_pred hCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECC--CHHHHHHhcCccCceEEEEE
Confidence 567888776655443333322222445665554444 35667777665466677754
No 295
>PRK13390 acyl-CoA synthetase; Provisional
Probab=42.85 E-value=1e+02 Score=26.72 Aligned_cols=68 Identities=12% Similarity=-0.098 Sum_probs=48.2
Q ss_pred EEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 179 IVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
-.+|...+...+..++. ..++.++|++.... .+...+++++..|+..+..+. .+.+.++...++..++
T Consensus 23 ~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~--~~~~~~~~~~~~~~~~ 97 (501)
T PRK13390 23 EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINH--HLTAPEADYIVGDSGA 97 (501)
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecccc--CCCHHHHHHHHHhcCC
Confidence 35888988776665554 44788888876533 345568889999998887776 3677777777766554
No 296
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=42.43 E-value=84 Score=21.21 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccC-CHHHHHHHHHHHHHCCe
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMER-CLEWTISYIAIHKAGGG 90 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~-~~~~~~~~~a~~~~G~~ 90 (251)
..+.+.+.+.|+.+++.|.+++.. +.....+.+.+...|..
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHE 106 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCC
Confidence 345556677788889999999988 46666666777777754
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.22 E-value=1.3e+02 Score=25.67 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=10.6
Q ss_pred cCchHHHhhhhcccc
Q psy4550 234 YDPPRLTSGWVRLPL 248 (251)
Q Consensus 234 ~~~~~~~~~i~~~~v 248 (251)
++|..+++.+-.+++
T Consensus 358 ~~~~~~~~~l~g~~~ 372 (388)
T PRK12723 358 AEPLTFIKKINGYRI 372 (388)
T ss_pred CCHHHHHHHhcCCCc
Confidence 577778877766655
No 298
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=41.96 E-value=2.4e+02 Score=24.78 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=57.3
Q ss_pred CCceEEEec-CC-------CeeeHHHHHHHHHHHHHHHHhcCCCCC-CEEEEEccCC--HHHHHHHHHHHHHCCeEeeCC
Q psy4550 27 PDKIAVVDH-DG-------RSITFKQLDEWTDIVGTYLINQGCIVG-STVGVLMERC--LEWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 27 ~~~~a~~~~-~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g-~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~ 95 (251)
++.++++.. .| -.+|++.+...+..... ..++.++ |++...+|-. ..++..+.+.+..|+..+.+.
T Consensus 151 ~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~ 227 (545)
T PRK07768 151 EDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFV---AAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVT 227 (545)
T ss_pred CCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHH---hcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeC
Confidence 456666532 22 35889888765544433 3466666 7877776643 344445666788888877765
Q ss_pred CC---CCHHHHHHHHhhcCccEEEEcc
Q psy4550 96 TS---YPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 96 ~~---~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+. ..+..+..++++.+++++.+..
T Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~ 254 (545)
T PRK07768 228 PMDFLRDPLLWAELISKYRGTMTAAPN 254 (545)
T ss_pred HHHHHHhHHHHHHHHHHhCCEEEECch
Confidence 53 2466777889999998765543
No 299
>PRK06060 acyl-CoA synthetase; Validated
Probab=41.84 E-value=2.1e+02 Score=26.36 Aligned_cols=85 Identities=11% Similarity=-0.005 Sum_probs=55.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|.+.+...+..+.. ...++.++|++....+-... +...++..+..|+..+..+.......+...++..+++++.
T Consensus 164 ~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 241 (705)
T PRK06060 164 IHRHADPLTFVDAMCR--KALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLY 241 (705)
T ss_pred EEccccHHHHHHHHHH--HhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEe
Confidence 4788777665544322 23467788887666553222 2234566677888777666566778888889999999988
Q ss_pred Eccchhhhh
Q psy4550 117 TKGEYMDRL 125 (251)
Q Consensus 117 ~~~~~~~~~ 125 (251)
..+.....+
T Consensus 242 ~~P~~l~~l 250 (705)
T PRK06060 242 GVPNFFARV 250 (705)
T ss_pred eHHHHHHHH
Confidence 876655443
No 300
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=41.73 E-value=56 Score=29.04 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=49.5
Q ss_pred EeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 180 VCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
.+|+..+...+..++. ..++..+|++.... .+...+++++..|+..+..+. .+.+..+.+.+++.++
T Consensus 57 ~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~--~~~~~~l~~~l~~~~~ 130 (573)
T PRK05605 57 TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNP--LYTAHELEHPFEDHGA 130 (573)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCc--CCCHHHHHHHHhccCC
Confidence 4788888766655544 45788888876532 445678899999999988876 4788888888887664
No 301
>smart00728 ChW Clostridial hydrophobic, with a conserved W residue, domain.
Probab=41.52 E-value=17 Score=20.33 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=9.5
Q ss_pred ccCCCCCCceEE
Q psy4550 169 SSGTTGKPKGIV 180 (251)
Q Consensus 169 TSGtTG~pK~v~ 180 (251)
++||+|..+.+.
T Consensus 17 ~aGT~G~~lriE 28 (46)
T smart00728 17 IAGTVGQGLRIE 28 (46)
T ss_pred EcccCCCCceeE
Confidence 689999887653
No 302
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.49 E-value=1.1e+02 Score=24.78 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCH---HHHHHHHhhcCccEEEE
Q psy4550 43 KQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP---ALLESVLDDAKPSIVIT 117 (251)
Q Consensus 43 ~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~---~~l~~~l~~~~~~~vi~ 117 (251)
..+.++...+-..+++. .+....+..+..++...++.--+|+-..+..-.-=...-++ .++...+++.++++||+
T Consensus 153 ~~~~~~L~~l~~~~~~~l~~~~~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~ 232 (287)
T cd01137 153 AAYKAKLKALDEWAKAKFATIPAEKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFV 232 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCEEEEecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 34444444444444432 23333566777888888877666555443211100112344 44555677889999999
Q ss_pred ccchhhh
Q psy4550 118 KGEYMDR 124 (251)
Q Consensus 118 ~~~~~~~ 124 (251)
++....+
T Consensus 233 e~~~~~~ 239 (287)
T cd01137 233 ESTVNDR 239 (287)
T ss_pred eCCCChH
Confidence 8776544
No 303
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=41.44 E-value=72 Score=21.76 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=24.6
Q ss_pred CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcC
Q psy4550 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQG 60 (251)
Q Consensus 28 ~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g 60 (251)
|+++.+ .++..+|++|+.+++..+...+...|
T Consensus 2 D~IvAv-Vn~eiIt~sel~~~~~~~~~~~~~~~ 33 (118)
T PF09312_consen 2 DRIVAV-VNDEIITQSELEQRLAQLKAQIQQQG 33 (118)
T ss_dssp --EEEE-ESSSEEEHHHHHHHHHHHHHHHHTTT
T ss_pred CeEEEE-ECCcCcCHHHHHHHHHHHHHHHHhcC
Confidence 455555 58889999999999999888777654
No 304
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=41.33 E-value=1.7e+02 Score=25.84 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=51.1
Q ss_pred eeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEccCCHHHH---HHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQG-CIVGSTVGVLMERCLEWT---ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~---~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+|+..+...+.....++...+ +.+++.+.+......... ...+..+..|...+.+........+...++..++++
T Consensus 227 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~ 306 (560)
T PRK08751 227 MLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTA 306 (560)
T ss_pred EEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeE
Confidence 4788888887777666664433 677776655433222111 122333445554444444457788888899999888
Q ss_pred EEEccchhh
Q psy4550 115 VITKGEYMD 123 (251)
Q Consensus 115 vi~~~~~~~ 123 (251)
+...+....
T Consensus 307 ~~~~p~~~~ 315 (560)
T PRK08751 307 FTGVNTLFN 315 (560)
T ss_pred ecChHHHHH
Confidence 877555443
No 305
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=40.91 E-value=2.4e+02 Score=24.69 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=41.5
Q ss_pred eeHHHHHHHHHHH--------------HHH-HHhcCCCCCCEEEEEccCCHHHHHHHHH-HHHHCCeEeeC---------
Q psy4550 40 ITFKQLDEWTDIV--------------GTY-LINQGCIVGSTVGVLMERCLEWTISYIA-IHKAGGGYLPL--------- 94 (251)
Q Consensus 40 ~T~~~l~~~~~~~--------------a~~-L~~~g~~~g~~V~l~~~~~~~~~~~~~a-~~~~G~~~v~i--------- 94 (251)
-||.+|.+.+..+ |.. +...++++||.| +.. .++...-+ +...|++++-+
T Consensus 78 ~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V----p~n-~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~ 152 (460)
T PRK13237 78 RNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV----PGN-MYFTTTRYHQELNGGIFVDIIIDEAHDAQ 152 (460)
T ss_pred CcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE----CCc-cchHhhHHHHHhCCcEEEeeecccccccc
Confidence 4777777777654 223 334589999965 322 33444444 67888877634
Q ss_pred -----CCCCCHHHHHHHHhhc
Q psy4550 95 -----ETSYPPALLESVLDDA 110 (251)
Q Consensus 95 -----~~~~~~~~l~~~l~~~ 110 (251)
....+.+.+...++..
T Consensus 153 ~~~p~tgnlD~d~Le~~I~~~ 173 (460)
T PRK13237 153 SDHPFKGNVDLDKLQALIDEV 173 (460)
T ss_pred cCCCCCCCcCHHHHHHHhccc
Confidence 3346788899988754
No 306
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=40.84 E-value=2.5e+02 Score=25.08 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=27.7
Q ss_pred CCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCC----HHHHHHHHhhc
Q psy4550 63 VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP----PALLESVLDDA 110 (251)
Q Consensus 63 ~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~----~~~l~~~l~~~ 110 (251)
.|.+|+|+.+....+-.+-+- ..+|..++.+-.... .+++..+++.+
T Consensus 362 ~GKrvaI~gdpd~~~~l~~fL-~ElGmepv~v~~~~~~~~~~~~l~~ll~~~ 412 (515)
T TIGR01286 362 HGKRFAIYGDPDFVMGLVRFV-LELGCEPVHILCTNGTKRWKAEMKALLAAS 412 (515)
T ss_pred cCceEEEECCHHHHHHHHHHH-HHCCCEEEEEEeCCCCHHHHHHHHHHHhcC
Confidence 488999998665443333333 378987765543333 45566666543
No 307
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=40.77 E-value=1.2e+02 Score=23.47 Aligned_cols=59 Identities=19% Similarity=0.031 Sum_probs=40.4
Q ss_pred CCCCCCcCchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCC
Q psy4550 2 DSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63 (251)
Q Consensus 2 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~ 63 (251)
.+..++..+.-..+.+.+.+..+....++||+=..+..-+|.++.+ +..+.|+++|+..
T Consensus 7 s~~~~~~~~~~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~---k~~~~l~~lg~~v 65 (224)
T COG3340 7 SSSTFSFEDVLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVE---KVRNALAKLGLEV 65 (224)
T ss_pred cCCCcccchhhhhhhHHHHHHhcCCCceEEEEecCccccchHHHHH---HHHHHHHHcCCee
Confidence 3445566666777888888888777778999843455666755544 4556688888654
No 308
>COG3220 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.61 E-value=91 Score=24.80 Aligned_cols=50 Identities=8% Similarity=0.053 Sum_probs=40.6
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhc
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~ 59 (251)
|....+|+++....++.+-++.++..+...=-+.+|...+.+++.+....
T Consensus 223 pV~~~VW~Ll~~a~a~~gp~ptllErD~~~Pp~a~L~aE~~~i~~lq~~~ 272 (282)
T COG3220 223 PVKDEVWDLLEAAYARLGPRPTLLERDFNIPPFAELLAEVEAIAELQDRI 272 (282)
T ss_pred ccchhHHHHHHHHHHhcCCCCeeeeeccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999877766667889988887777766554
No 309
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=40.53 E-value=77 Score=27.97 Aligned_cols=68 Identities=4% Similarity=-0.136 Sum_probs=48.3
Q ss_pred EEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 179 IVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
..+|+..+...+..++. ..++.+++++...+ -+...+++++..|+..+..+. ...+.++...+++.++
T Consensus 54 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~--~~~~~~l~~~l~~~~~ 128 (546)
T PLN02330 54 KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANP--TALESEIKKQAEAAGA 128 (546)
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCc--cCCHHHHHHHHHhcCC
Confidence 46888988776655544 44788888876543 334567899999998887765 3677888888877654
No 310
>KOG1176|consensus
Probab=40.16 E-value=44 Score=29.81 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=52.5
Q ss_pred eEEeccHHHHHHHHHHHHhCC-----CCCCChhhhhH---H-HHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 178 GIVCPHRGAVHAYKWRHRAYP-----YDEDDREACNV---F-FVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 178 ~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~~~~~---~-~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
|..+|+..+...+..++..+. ++.+|++...+ + +..-.++++..|+.+.-.+. .+++.++...++..+.
T Consensus 43 g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np--~~~~~ei~~~~~~s~~ 120 (537)
T KOG1176|consen 43 GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNP--RLTASEIAKQLKDSKP 120 (537)
T ss_pred CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCc--ccCHHHHHHHHHhcCC
Confidence 889999998888776666443 67799987644 2 34456888999998888887 5888888888876654
No 311
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=40.15 E-value=85 Score=24.26 Aligned_cols=38 Identities=21% Similarity=-0.122 Sum_probs=27.4
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~ 77 (251)
=||.++.+|+...-..+......+|+.|+|+++..+--
T Consensus 150 ES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir 187 (228)
T PRK14119 150 ESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIR 187 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeChHHHH
Confidence 48999999998876665544445678888888865433
No 312
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=39.71 E-value=2.5e+02 Score=24.24 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=57.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCC--CCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETS--YPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~--~~~~~l~~~l~~~~~~~v 115 (251)
.+|++.+...+...... .++..++++....+-+... +..+++.+..|...+..+.. .++..+...++..++..+
T Consensus 162 ~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~ 238 (503)
T PRK04813 162 QISHDNLVSFTNWMLED---FALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVW 238 (503)
T ss_pred EeehHHHHHHHHHHHHH---cCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEE
Confidence 58999888766655443 4677788887777654322 34556777888887766643 467788888899999888
Q ss_pred EEccchhh
Q psy4550 116 ITKGEYMD 123 (251)
Q Consensus 116 i~~~~~~~ 123 (251)
...+...+
T Consensus 239 ~~~p~~~~ 246 (503)
T PRK04813 239 VSTPSFAD 246 (503)
T ss_pred EeChHHHH
Confidence 87766543
No 313
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=39.62 E-value=2.7e+02 Score=24.55 Aligned_cols=77 Identities=9% Similarity=0.050 Sum_probs=53.6
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|+..+...+.. .....++.++|++....+-.-. ++..+++.+..|+..+... ..+++.+...++..++.+++
T Consensus 206 ~~t~~~l~~~~~~---~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 281 (547)
T PRK06087 206 MLTHNNILASERA---YCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD-IFTPDACLALLEQQRCTCML 281 (547)
T ss_pred EEecHHHHHHHHH---HHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCCEEe
Confidence 4788887655443 2344578889998777664322 3445667778888877664 45788888899999999887
Q ss_pred Ecc
Q psy4550 117 TKG 119 (251)
Q Consensus 117 ~~~ 119 (251)
...
T Consensus 282 ~~~ 284 (547)
T PRK06087 282 GAT 284 (547)
T ss_pred ccH
Confidence 643
No 314
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=39.42 E-value=1.7e+02 Score=24.65 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=35.4
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC------CCCHHHHHHHHhhc------CccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET------SYPPALLESVLDDA------KPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~------~~~~~~l~~~l~~~------~~~~vi~~ 118 (251)
+++||+|.+-.. .+...+.++...|+.++.++. ..+.+.+...++.. ++++|+.+
T Consensus 99 ~~~gd~Vlv~~~---~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~ 165 (387)
T PRK09331 99 CKKGDYVVLDGL---AHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLT 165 (387)
T ss_pred cCCCCEEEECCC---chHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEE
Confidence 468998876533 333334567778887777654 14678888877653 56767654
No 315
>PLN02409 serine--glyoxylate aminotransaminase
Probab=39.08 E-value=2.2e+02 Score=24.18 Aligned_cols=57 Identities=12% Similarity=-0.075 Sum_probs=30.4
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC--CC--CCCHHHHHHHHhh---cCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL--ET--SYPPALLESVLDD---AKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i--~~--~~~~~~l~~~l~~---~~~~~vi~~ 118 (251)
+++||.|.+..+...... ..-.+.+.|+.++.+ ++ ....+++...++. .++++|+..
T Consensus 81 ~~~Gd~Vlv~~~~~~~~~-~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~ 144 (401)
T PLN02409 81 LSPGDKVVSFRIGQFSLL-WIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVV 144 (401)
T ss_pred CCCCCEEEEeCCCchhHH-HHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEE
Confidence 567888777664332222 123344556544444 32 2356777777765 255665553
No 316
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=39.03 E-value=1.4e+02 Score=27.78 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=41.9
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC---------CH-----HHHHHHHhhcC-c----cEEEEccch
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY---------PP-----ALLESVLDDAK-P----SIVITKGEY 121 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~---------~~-----~~l~~~l~~~~-~----~~vi~~~~~ 121 (251)
+++||+| ++-+|+-..+.- |+..+|+.++-+.|.. ++ +.+...++... + .+||+.+.+
T Consensus 232 ~~~Gd~V-LvdRN~HKSv~~--aLilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY 308 (713)
T PRK15399 232 APAGSTL-LIDRNCHKSLAH--LLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY 308 (713)
T ss_pred cCCCCEE-EeecccHHHHHH--HHHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC
Confidence 6789977 578888777655 9999999999998753 23 77888886652 2 466665543
No 317
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=38.92 E-value=1.2e+02 Score=22.21 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=18.7
Q ss_pred eeHHHHHHHHHHHHHHHHhc
Q psy4550 40 ITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~ 59 (251)
+||.|+.+.+.++|..+.+.
T Consensus 3 is~~~i~~~i~~lA~~I~~~ 22 (166)
T TIGR01203 3 IPEEQIKARIAELAKQITED 22 (166)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999875
No 318
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=38.75 E-value=1.5e+02 Score=21.84 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=19.2
Q ss_pred eeeHHHHHHHHHHHHHHHHhc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~ 59 (251)
-+||.|+.+++.++|..+.+.
T Consensus 6 l~s~~~i~~~i~~la~~i~~~ 26 (176)
T PRK05205 6 ILDAEALRRALTRIAHEIIER 26 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999885
No 319
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=38.74 E-value=2.3e+02 Score=23.46 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=34.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC----CCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET----SYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~----~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|++-.|. +.....++...|+..++++. ....+++...++..++++|+..
T Consensus 97 ~~~gd~Vlv~~p~---y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~ 155 (351)
T PRK14807 97 INKGDVVIYPHPS---FAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLC 155 (351)
T ss_pred cCCCCEEEEeCCC---hHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEe
Confidence 5689998876543 23344455667876666643 2456777777766577777643
No 320
>PRK09224 threonine dehydratase; Reviewed
Probab=38.71 E-value=2.8e+02 Score=24.59 Aligned_cols=54 Identities=6% Similarity=-0.015 Sum_probs=40.2
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
+.+..+--...+.+++...|..++.+-|..++..-...++..+++++++.+.+.
T Consensus 72 V~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~~~~ 125 (504)
T PRK09224 72 ITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDSFD 125 (504)
T ss_pred EEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHH
Confidence 344445555667778899998777777777777777789999999999976544
No 321
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=38.32 E-value=2.4e+02 Score=23.66 Aligned_cols=58 Identities=7% Similarity=0.041 Sum_probs=47.3
Q ss_pred EEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 66 TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 66 ~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.|+--..|+-+-+ .+||.+.|...+.+=|..++..-..-++.+++.++++.+.+.+..
T Consensus 77 ViaaSaGNHaQGv--A~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~~dda~ 134 (347)
T COG1171 77 VIAASAGNHAQGV--AYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNFDDAY 134 (347)
T ss_pred eEEecCCcHHHHH--HHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECCCHHHHH
Confidence 6777777877765 579999998888888888888888889999999999988775543
No 322
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=38.21 E-value=43 Score=25.76 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=25.0
Q ss_pred HHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 81 YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 81 ~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+=++..+|+.+++|++..+.+.+..+++..+- ++++.
T Consensus 30 v~~i~~aG~~pv~ip~~~~~~~~~~~l~~idG-lll~G 66 (217)
T PF07722_consen 30 VKAIEAAGGRPVPIPYDADDEELDELLDRIDG-LLLPG 66 (217)
T ss_dssp HHHHHHTT-EEEEE-SS--HHHHHHHHHCSSE-EEE--
T ss_pred HHHHHHcCCEEEEEccCCCHHHHHHHHhhcCE-EEEcC
Confidence 34567889999999999999999999997764 45543
No 323
>PLN02574 4-coumarate--CoA ligase-like
Probab=38.17 E-value=2.9e+02 Score=24.53 Aligned_cols=86 Identities=8% Similarity=0.060 Sum_probs=54.3
Q ss_pred eeeHHHHHHHHHHHHHHHHh-cCCCCCC-EEEEEccCC--HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIVGTYLIN-QGCIVGS-TVGVLMERC--LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~-~g~~~g~-~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+|++.+...+..+...... .+...++ ++...+|-. ..+...+++.+..|+..+..+ ..+++++...+++.++++
T Consensus 217 ~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 295 (560)
T PLN02574 217 VLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMR-RFDASDMVKVIDRFKVTH 295 (560)
T ss_pred EEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEec-CCCHHHHHHHHHHcCCeE
Confidence 58999988777666543332 2333233 433333321 112233456667788877654 568899999999999999
Q ss_pred EEEccchhhhh
Q psy4550 115 VITKGEYMDRL 125 (251)
Q Consensus 115 vi~~~~~~~~~ 125 (251)
+...+.....+
T Consensus 296 ~~~~P~~~~~l 306 (560)
T PLN02574 296 FPVVPPILMAL 306 (560)
T ss_pred EecCCHHHHHH
Confidence 98877765544
No 324
>PRK07503 methionine gamma-lyase; Provisional
Probab=38.12 E-value=1.9e+02 Score=24.64 Aligned_cols=55 Identities=18% Similarity=0.074 Sum_probs=30.9
Q ss_pred CCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++||.|.+-.+.-... .....++...|+.+..++.. ..+++...++. ++++|+.
T Consensus 101 l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-d~~~l~~~i~~-~tklV~l 156 (403)
T PRK07503 101 LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-DPAALKAAISD-KTRMVYF 156 (403)
T ss_pred cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC-CHHHHHHhcCc-cCcEEEE
Confidence 67888876644322111 11223445577777776653 56667766644 5666665
No 325
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=38.06 E-value=2.9e+02 Score=24.51 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=53.5
Q ss_pred eeeHHHHHHHHHHHHHHHHhcC------CCCCCEEEEEccCCHH---HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhh
Q psy4550 39 SITFKQLDEWTDIVGTYLINQG------CIVGSTVGVLMERCLE---WTISYIAIHKAGGGYLPLETSYPPALLESVLDD 109 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g------~~~g~~V~l~~~~~~~---~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~ 109 (251)
.+|++.+...+..+...+...+ +..++.+.+....-.. +....+.++..|...+..........+...++.
T Consensus 226 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~ 305 (562)
T PRK12492 226 MLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGK 305 (562)
T ss_pred EEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHH
Confidence 5889999888877777765433 4556655443222211 122334455667655555444567778888899
Q ss_pred cCccEEEEccchhhh
Q psy4550 110 AKPSIVITKGEYMDR 124 (251)
Q Consensus 110 ~~~~~vi~~~~~~~~ 124 (251)
.++..++..+.....
T Consensus 306 ~~~t~~~~~p~~~~~ 320 (562)
T PRK12492 306 WRFSALLGLNTLFVA 320 (562)
T ss_pred hCCceeeCcHHHHHH
Confidence 999988876655443
No 326
>cd07050 BMC_EutL_repeat2 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 2 (the second BMC domain of EutL).
Probab=38.00 E-value=84 Score=19.96 Aligned_cols=38 Identities=26% Similarity=0.223 Sum_probs=31.3
Q ss_pred HHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 54 TYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 54 ~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
.+|.+ .|++.|+.++.+.....|.+..+=+.+++.-+-
T Consensus 4 sYls~~agi~eGe~lAYLIapPlEa~y~lDaALKAAdV~ 42 (87)
T cd07050 4 SYLSKTAGIAEGEALAYLIAPPLEAMYGLDAALKAADVE 42 (87)
T ss_pred hhhHHhcCCCCCCeeeeeecCcHHHHHHHHHHHHhhcee
Confidence 45655 499999999999999999999888888876443
No 327
>PRK06721 threonine synthase; Reviewed
Probab=37.93 E-value=1.6e+02 Score=24.54 Aligned_cols=89 Identities=8% Similarity=-0.079 Sum_probs=50.7
Q ss_pred CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC-CHHHHHHH
Q psy4550 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY-PPALLESV 106 (251)
Q Consensus 28 ~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~l~~~ 106 (251)
.++.+.. ++..-|.+-=.+.+..+.....+.|. +.| +....+---..+.++|...|..++.+-|.. .+..-...
T Consensus 43 ~~i~~K~-E~~nptGS~KdR~a~~~i~~a~~~g~---~~v-V~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~ 117 (352)
T PRK06721 43 IQLYGKY-EGANPTGSFKDRGMVMAVAKAKEEGS---EAI-ICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQ 117 (352)
T ss_pred CeEEEEe-cCCCCccchHHHHHHHHHHHHHHCCC---CEE-EEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHH
Confidence 3567764 33222332222333333333455552 233 333344444667777888998777666654 35556667
Q ss_pred HhhcCccEEEEccch
Q psy4550 107 LDDAKPSIVITKGEY 121 (251)
Q Consensus 107 l~~~~~~~vi~~~~~ 121 (251)
++..+++++++....
T Consensus 118 ~~~~GA~V~~~~~~~ 132 (352)
T PRK06721 118 AVAYGAEIISIEGNF 132 (352)
T ss_pred HHHcCCEEEEECCCH
Confidence 889999999997654
No 328
>PRK08162 acyl-CoA synthetase; Validated
Probab=37.80 E-value=61 Score=28.52 Aligned_cols=68 Identities=7% Similarity=-0.078 Sum_probs=50.2
Q ss_pred EeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 180 VCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.+|...+...+..++. ..++..+|++.... .+...+++++..|+..+..+. .+++..+...+++.+++
T Consensus 43 ~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~--~~~~~~~~~~l~~~~~~ 117 (545)
T PRK08162 43 RRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNT--RLDAASIAFMLRHGEAK 117 (545)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEecccc--ccChHHHHHHHHhCCCe
Confidence 5888888776655554 34788888886533 345668899999998888886 47888888888877654
No 329
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=37.36 E-value=1e+02 Score=25.02 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=43.7
Q ss_pred eeeHHHHHHH------HHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 39 SITFKQLDEW------TDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 39 ~~T~~~l~~~------~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.+.|.++.+. .+.+...+...|+.+++.|.++|..+......++|+..+|....
T Consensus 203 Nipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~ 262 (285)
T COG2897 203 NIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNN 262 (285)
T ss_pred CcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCc
Confidence 5788888871 22334444578999999999999999999999999999998766
No 330
>PRK05638 threonine synthase; Validated
Probab=37.08 E-value=1.5e+02 Score=25.75 Aligned_cols=58 Identities=7% Similarity=-0.199 Sum_probs=38.7
Q ss_pred CEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh
Q psy4550 65 STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 65 ~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
+.|.. ...+---..+.+.+..+|..+..+-|...+..-...++..+++++.++....+
T Consensus 113 ~~vv~-aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~~~~~ 170 (442)
T PRK05638 113 NGFIV-ASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGESVDE 170 (442)
T ss_pred CEEEE-eCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECCCHHH
Confidence 34433 44444445555667788876666666555666677899999999999765443
No 331
>PF05114 DUF692: Protein of unknown function (DUF692); InterPro: IPR007801 The proteins in this entry are functionally uncharacterised.; PDB: 3BWW_A.
Probab=36.88 E-value=96 Score=24.99 Aligned_cols=51 Identities=10% Similarity=0.085 Sum_probs=31.9
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcC
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQG 60 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g 60 (251)
|...-+++++.+..++.+.++.++.+|+.-=.+.++.+.+.++...+.+.+
T Consensus 221 ~V~~~Vw~Ll~~~l~r~~~~~~llE~D~~~P~~~~l~~E~~~a~~~~~~~~ 271 (274)
T PF05114_consen 221 PVPEEVWDLLEEVLRRFGPRPTLLERDNNIPPLAELLAELDRARAILARAR 271 (274)
T ss_dssp ----HHHHHHHHHHTT-SS--EEE--------HHHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 345678999999999999999998777765589999999999988887754
No 332
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=36.81 E-value=62 Score=16.43 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=22.6
Q ss_pred CeeeHHHHHHHHHHHHHHHHhcCCCCC
Q psy4550 38 RSITFKQLDEWTDIVGTYLINQGCIVG 64 (251)
Q Consensus 38 ~~~T~~~l~~~~~~~a~~L~~~g~~~g 64 (251)
.++|+.|+...+.++-.+..+.|--|.
T Consensus 3 ~~i~~~~~~d~a~rv~~f~~~ngRlPn 29 (33)
T PF09373_consen 3 GTISKEEYLDMASRVNNFYESNGRLPN 29 (33)
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCC
Confidence 469999999999999999888875553
No 333
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=36.73 E-value=2.3e+02 Score=24.54 Aligned_cols=31 Identities=3% Similarity=-0.011 Sum_probs=14.6
Q ss_pred HHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 85 HKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 85 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+.|+.+..+++. ..+++...++. +.++|++
T Consensus 125 ~~~Gi~v~~vd~~-d~~~l~~~i~~-~TklV~~ 155 (433)
T PRK08134 125 RRFGIETTFVKPG-DIDGWRAAIRP-NTRLLFG 155 (433)
T ss_pred hhCCeEEEEECCC-CHHHHHHhcCC-CCeEEEE
Confidence 3455555555543 44555555532 3444443
No 334
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=36.52 E-value=1.2e+02 Score=24.40 Aligned_cols=57 Identities=7% Similarity=0.040 Sum_probs=35.2
Q ss_pred EEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCH---HHHHHHHhhcCccEEEEccchhhh
Q psy4550 66 TVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPP---ALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 66 ~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~---~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
+..+...+...++.-.+++-..+.. .+.+ .-++ .++...++..++++||+++....+
T Consensus 172 ~~~v~~H~af~Y~~~~~gl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~ 233 (282)
T cd01017 172 KTFVTQHAAFGYLARRYGLKQIAIV--GVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSK 233 (282)
T ss_pred CeEEEecccHHHHHHHCCCeEEecc--cCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChH
Confidence 4456777788877766665544321 1122 2344 445556677889999998876554
No 335
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=36.51 E-value=2.6e+02 Score=24.68 Aligned_cols=67 Identities=10% Similarity=-0.078 Sum_probs=45.8
Q ss_pred hcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 58 NQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 58 ~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
..+++++|++....+-.-. .....++++..|+.++.-......+.+.+.+++.+++++...+.....
T Consensus 214 ~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~ 281 (542)
T PRK06018 214 ALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLM 281 (542)
T ss_pred hcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHH
Confidence 4578889988766653211 122234566778877654456678889999999999999987765543
No 336
>PRK07514 malonyl-CoA synthase; Validated
Probab=36.49 E-value=86 Score=27.17 Aligned_cols=70 Identities=17% Similarity=0.025 Sum_probs=49.8
Q ss_pred eEEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 178 GIVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 178 ~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
+..+|...+...+..++. ..++.++|++.... -+...+++++..|+..+..+. .+.+.++...+++.+++
T Consensus 26 ~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~--~~~~~~~~~~l~~~~~~ 102 (504)
T PRK07514 26 GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNT--AYTLAELDYFIGDAEPA 102 (504)
T ss_pred CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCC--CCCHHHHHHHHHhCCCc
Confidence 346888877665554443 45788898875533 345667899999999988886 37788888888877653
No 337
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=36.48 E-value=1.6e+02 Score=25.54 Aligned_cols=58 Identities=9% Similarity=-0.173 Sum_probs=43.6
Q ss_pred EEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 67 V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
-.+....+=--..+.+++...|..++.+=|...+..-...++..+++++++...+.+.
T Consensus 154 ~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~~~~a 211 (431)
T TIGR02035 154 SIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESDYGVA 211 (431)
T ss_pred eEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 3344454555566778888889877777777788888889999999999998765443
No 338
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=36.37 E-value=2.2e+02 Score=22.70 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~ 91 (251)
.-+.+++....+.-++++.+.|..| ..+-.++.+.+..+.+.+ .++-.+.+.++|...+ +.-.+++..+|+..
T Consensus 138 ~~~~~~~~~~~~~g~~~i~l~DT~G-~~~P~~v~~lv~~l~~~~-----~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~ 211 (266)
T cd07944 138 EELLELLELVNEIKPDVFYIVDSFG-SMYPEDIKRIISLLRSNL-----DKDIKLGFHAHNNLQLALANTLEAIELGVEI 211 (266)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCC-CCCHHHHHHHHHHHHHhc-----CCCceEEEEeCCCccHHHHHHHHHHHcCCCE
Confidence 4566677776666788888887666 588888877777665432 2345799999988766 56788888999765
Q ss_pred e
Q psy4550 92 L 92 (251)
Q Consensus 92 v 92 (251)
+
T Consensus 212 v 212 (266)
T cd07944 212 I 212 (266)
T ss_pred E
Confidence 4
No 339
>KOG1371|consensus
Probab=36.20 E-value=2.4e+02 Score=23.49 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 97 SYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
..+.+.|+++.+..+.+.|+.-..+.
T Consensus 63 l~D~~~L~kvF~~~~fd~V~Hfa~~~ 88 (343)
T KOG1371|consen 63 LNDAEALEKLFSEVKFDAVMHFAALA 88 (343)
T ss_pred cCCHHHHHHHHhhcCCceEEeehhhh
Confidence 45677888888888888888765543
No 340
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=36.03 E-value=1.1e+02 Score=19.11 Aligned_cols=40 Identities=13% Similarity=-0.081 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.+...+...+..+++.|.+++.++.....+...+...|..
T Consensus 43 ~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 43 EFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred HHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 3444556667888999999998887777777777777754
No 341
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=35.90 E-value=53 Score=25.86 Aligned_cols=81 Identities=9% Similarity=0.097 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCHH---HHHHHHhhcCccEEE
Q psy4550 42 FKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPPA---LLESVLDDAKPSIVI 116 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~~---~l~~~l~~~~~~~vi 116 (251)
+.++.++...+...+++.--.-..+..+...+..+++.-.+++...+.. -..+ ..++. ++...++..++++||
T Consensus 127 ~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~h~~~~Y~~~~~gl~~~~~~--~~~~~~~ps~~~l~~l~~~ik~~~v~~i~ 204 (256)
T PF01297_consen 127 AEKYLKELDELDAEIKEKLAKLPGRPVVVYHDAFQYFAKRYGLKVIGVI--EISPGEEPSPKDLAELIKLIKENKVKCIF 204 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSGGEEEEEESTTHHHHHHTT-EEEEEE--SSSSSSSS-HHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCeEEEEChHHHHHHHhcCCceeeee--ccccccCCCHHHHHHHHHHhhhcCCcEEE
Confidence 4556666666666655531111226667888888888887766555433 1222 23444 455566888999999
Q ss_pred Eccchhhh
Q psy4550 117 TKGEYMDR 124 (251)
Q Consensus 117 ~~~~~~~~ 124 (251)
+++....+
T Consensus 205 ~e~~~~~~ 212 (256)
T PF01297_consen 205 TEPQFSSK 212 (256)
T ss_dssp EETTS-TH
T ss_pred ecCCCChH
Confidence 98765444
No 342
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=35.56 E-value=2.2e+02 Score=25.27 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=21.9
Q ss_pred CCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC
Q psy4550 63 VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 63 ~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~ 96 (251)
.|.+|+|+.+....+-++-+....+|..++....
T Consensus 294 ~Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv~~gt 327 (511)
T TIGR01278 294 TGKRAFVFGDATHAVGMTKILARELGIHIVGAGT 327 (511)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHhCCCEEEecCC
Confidence 4788988887654444444444468888776543
No 343
>PRK07409 threonine synthase; Validated
Probab=35.10 E-value=1.8e+02 Score=24.22 Aligned_cols=53 Identities=9% Similarity=-0.110 Sum_probs=35.8
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCC-CHHHHHHHHhhcCccEEEEccch
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSY-PPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
+....+---..+.++|...|..+..+-|.. .+..-...++..++++++++..+
T Consensus 82 v~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~~ 135 (353)
T PRK07409 82 ICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDGNF 135 (353)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECCCH
Confidence 333444335777888899998766555554 34555556788999999998643
No 344
>PRK15029 arginine decarboxylase; Provisional
Probab=34.97 E-value=1.7e+02 Score=27.50 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=42.5
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC---------C-----HHHHHHHHhhcC-cc---------EEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY---------P-----PALLESVLDDAK-PS---------IVI 116 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~---------~-----~~~l~~~l~~~~-~~---------~vi 116 (251)
+++||+| ++-+|+-..+.. |+..+|+.++-+.|.. + ++.+...++... ++ +++
T Consensus 242 ~~~gd~V-lv~RN~HKSv~~--al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvl 318 (755)
T PRK15029 242 MTDNDVV-VVDRNCHKSIEQ--GLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVV 318 (755)
T ss_pred cCCCCEE-EeecccHHHHHH--HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEE
Confidence 5789976 577888777666 9999999999998753 3 778888886553 32 666
Q ss_pred Eccch
Q psy4550 117 TKGEY 121 (251)
Q Consensus 117 ~~~~~ 121 (251)
+.+.+
T Consensus 319 t~PTY 323 (755)
T PRK15029 319 TNCTY 323 (755)
T ss_pred ECCCC
Confidence 66654
No 345
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=34.97 E-value=57 Score=19.81 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
..+.+.|.++|+.+|..|-+.-.
T Consensus 22 ~~~~~~L~~lGl~~G~~i~v~~~ 44 (74)
T PF04023_consen 22 PELLRRLADLGLTPGSEITVIRK 44 (74)
T ss_dssp HHHHHHHHHCT-STTEEEEEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEe
Confidence 45667899999999999988854
No 346
>PRK12582 acyl-CoA synthetase; Provisional
Probab=34.73 E-value=97 Score=28.03 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=46.9
Q ss_pred EEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCc-----hHHHhhhhcc
Q psy4550 179 IVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDP-----PRLTSGWVRL 246 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~-----~~~~~~i~~~ 246 (251)
-.+|+..+...+..++. ..|+.++|++...+ -+...+++++..|+..+..+.. +++ .++...++..
T Consensus 79 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~--~~~~~~~~~~l~~~l~~~ 156 (624)
T PRK12582 79 RKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPA--YSLMSHDHAKLKHLFDLV 156 (624)
T ss_pred EEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCc--cccccCCHHHHHHHHHhc
Confidence 46888888776655554 45788899886543 3455678899999998888762 332 6677776665
Q ss_pred cc
Q psy4550 247 PL 248 (251)
Q Consensus 247 ~v 248 (251)
++
T Consensus 157 ~~ 158 (624)
T PRK12582 157 KP 158 (624)
T ss_pred CC
Confidence 54
No 347
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=34.70 E-value=1.7e+02 Score=23.98 Aligned_cols=82 Identities=10% Similarity=0.063 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC--CCHHH---HHHHHhhcCccEEE
Q psy4550 42 FKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS--YPPAL---LESVLDDAKPSIVI 116 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~--~~~~~---l~~~l~~~~~~~vi 116 (251)
+..+.++...+-..+++.--....+..+...+...++.--+++-..|.. -+.+. -++.+ +...++..++++||
T Consensus 180 ~~~~~~~L~~l~~~~~~~l~~~~~~~~i~~H~af~Yf~~~ygl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~If 257 (311)
T PRK09545 180 LKDFEAQLAQTDKQIGNQLAPVKGKGYFVFHDAYGYFEKHYGLTPLGHF--TVNPEIQPGAQRLHEIRTQLVEQKATCVF 257 (311)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcEEEECchHHHHHHhCCCceeeee--ccCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3344444444444444431011234456677788888777776655532 23332 24455 55566678899999
Q ss_pred Eccchhhhh
Q psy4550 117 TKGEYMDRL 125 (251)
Q Consensus 117 ~~~~~~~~~ 125 (251)
+++....+.
T Consensus 258 ~e~~~~~~~ 266 (311)
T PRK09545 258 AEPQFRPAV 266 (311)
T ss_pred ecCCCChHH
Confidence 988765543
No 348
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=34.53 E-value=3.3e+02 Score=24.15 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=60.2
Q ss_pred cCchhhhHHHHHHHHHHhCCCceEEEecCCC---eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH
Q psy4550 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGR---SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84 (251)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~---~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~ 84 (251)
..+...++.+.+....+..-....+++.+++ -+|..++.+.-..--....+.| .=+|+.....+.+...-..++
T Consensus 173 tv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~G---rL~Vgaavg~~~~~~~~~~~l 249 (495)
T PTZ00314 173 VGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNG---QLLVGAAISTRPEDIERAAAL 249 (495)
T ss_pred EeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCC---CEEEEEEECCCHHHHHHHHHH
Confidence 3445567788888777777777777765553 4788888876542111111122 346777888888889999999
Q ss_pred HHHCCeEeeCCCC
Q psy4550 85 HKAGGGYLPLETS 97 (251)
Q Consensus 85 ~~~G~~~v~i~~~ 97 (251)
..+|+..+-++..
T Consensus 250 ~~ag~d~i~id~a 262 (495)
T PTZ00314 250 IEAGVDVLVVDSS 262 (495)
T ss_pred HHCCCCEEEEecC
Confidence 9999999988873
No 349
>PRK06234 methionine gamma-lyase; Provisional
Probab=34.42 E-value=2.6e+02 Score=23.76 Aligned_cols=56 Identities=13% Similarity=-0.038 Sum_probs=31.8
Q ss_pred CCCCCEEEEEccCCHHHHH-HHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTI-SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~-~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+....... ...++...|+.+..++.. +.+++...++. +.++|+..
T Consensus 100 l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-d~e~l~~~i~~-~tklI~ie 156 (400)
T PRK06234 100 LKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-NLEEVRNALKA-NTKVVYLE 156 (400)
T ss_pred hCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC-CHHHHHHHhcc-CCeEEEEE
Confidence 5678877665543322222 223456677777777653 56667666643 45666643
No 350
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=34.21 E-value=2.9e+02 Score=23.41 Aligned_cols=82 Identities=11% Similarity=0.046 Sum_probs=50.7
Q ss_pred CeeeHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEccCCH--HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 38 RSITFKQLDEWTDIVGTYLINQGCI--VGSTVGVLMERCL--EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 38 ~~~T~~~l~~~~~~~a~~L~~~g~~--~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
-.+|++.+...+..++..+ ++. +.+++..++|-.- .+...++..+..|+.++... ..++..+...++.. +
T Consensus 113 V~~sh~~l~~~~~~~~~~~---~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~-~~~~~~~l~~i~~~--t 186 (386)
T TIGR02372 113 VTHSWAALLSEAQAIAKIL---GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA-AAPASGIMRHARPG--D 186 (386)
T ss_pred eEeeHHHHHHHHHHHHHHh---CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC-CCChHHHHHhhccC--C
Confidence 3589999988887776654 443 3456777766442 23344566667888777664 45666655555432 5
Q ss_pred EEEEccchhhhh
Q psy4550 114 IVITKGEYMDRL 125 (251)
Q Consensus 114 ~vi~~~~~~~~~ 125 (251)
+++..+.....+
T Consensus 187 ~~~~~P~~l~~l 198 (386)
T TIGR02372 187 LIVGTPFIWEQL 198 (386)
T ss_pred EEEECcHHHHHH
Confidence 666666655544
No 351
>PRK02991 D-serine dehydratase; Provisional
Probab=34.19 E-value=2e+02 Score=25.07 Aligned_cols=56 Identities=11% Similarity=-0.137 Sum_probs=41.6
Q ss_pred EEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh
Q psy4550 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 68 ~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
.+....+=--..+.+++...|..+..+-|...+..-...++..+++++++...+.+
T Consensus 160 VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~~~~ 215 (441)
T PRK02991 160 IAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGDYGV 215 (441)
T ss_pred EEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHH
Confidence 34445554556677888889987777767677777778899999999999876543
No 352
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=33.98 E-value=2.5e+02 Score=23.69 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhCCCceEEEe----------cCCCeeeHHHHHHHHHHH---HHHH---------HhcCCCCCCEEEEE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVD----------HDGRSITFKQLDEWTDIV---GTYL---------INQGCIVGSTVGVL 70 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~----------~~~~~~T~~~l~~~~~~~---a~~L---------~~~g~~~g~~V~l~ 70 (251)
+++.+.=+...+..||.+|+-- ....+++..|..+.-+.. +.++ ++.|++||+
T Consensus 25 ~SveeVrr~I~~~~PDaVAVELd~~R~~sLl~~~~~~ldl~~vlk~Gk~~~~l~~~lLa~~Qrklg~~~Gv~PGs----- 99 (388)
T COG1916 25 DSVEEVRRIILEEKPDAVAVELDEARLLSLLGGSREELDLAQVLKEGKAFFLLAGLLLAYFQRKLGKELGVKPGS----- 99 (388)
T ss_pred hHHHHHHHHHHhcCCCeEEEEecHHHHHHHhcCCcccCCHHHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCChH-----
Confidence 4556666666789999999841 112358888888554432 2222 123777754
Q ss_pred ccCCHHHHHHHHHHHHHCCeEeeCCCC
Q psy4550 71 MERCLEWTISYIAIHKAGGGYLPLETS 97 (251)
Q Consensus 71 ~~~~~~~~~~~~a~~~~G~~~v~i~~~ 97 (251)
|...++-++...|+.+.++|-.
T Consensus 100 -----Emk~AIe~A~e~ga~V~lIDRd 121 (388)
T COG1916 100 -----EMKAAIEAARELGAPVALIDRD 121 (388)
T ss_pred -----HHHHHHHHHHHcCCCEEEeccc
Confidence 9999999999999999999863
No 353
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=33.91 E-value=1.5e+02 Score=24.51 Aligned_cols=88 Identities=9% Similarity=0.046 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcCCCCC----------C-EEEEEccCCHHHHHH---HHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCc
Q psy4550 47 EWTDIVGTYLINQGCIVG----------S-TVGVLMERCLEWTIS---YIAIHKAGGGYLPLETSYPPALLESVLDDAKP 112 (251)
Q Consensus 47 ~~~~~~a~~L~~~g~~~g----------~-~V~l~~~~~~~~~~~---~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~ 112 (251)
-.+..+++.|+++|.+++ . ...++.+++.-..+. ++=....+ ++|.+.+ ...+....+++...+
T Consensus 52 P~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~-~~V~V~~-dR~~~~~~~~~~~~~ 129 (326)
T PF02606_consen 52 PLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP-VPVIVGP-DRVAAARAALKEFPA 129 (326)
T ss_pred HHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC-CcEEEeC-cHHHHHHHHHHHCCC
Confidence 346677888888765431 1 133333333111111 11122333 4455543 356677778887789
Q ss_pred cEEEEccchhhhhhccCCCeeeec
Q psy4550 113 SIVITKGEYMDRLERTSVPKVKLE 136 (251)
Q Consensus 113 ~~vi~~~~~~~~~~~~~~~~~~~~ 136 (251)
++||.|+.+...........+.++
T Consensus 130 dviilDDGfQh~~L~rDl~Ivl~D 153 (326)
T PF02606_consen 130 DVIILDDGFQHRRLKRDLDIVLVD 153 (326)
T ss_pred CEEEEcCCcccccccCCcEEEEEe
Confidence 999999988776555555555544
No 354
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=33.88 E-value=75 Score=17.47 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=15.1
Q ss_pred HHHhcCCCCCCEEEEEccCC
Q psy4550 55 YLINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 55 ~L~~~g~~~g~~V~l~~~~~ 74 (251)
+...+|+++||.|.+...+.
T Consensus 15 ~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 15 IREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp HHHHTTSSTTTEEEEEEETT
T ss_pred HHHHcCCCCCCEEEEEEeCC
Confidence 45567999999998877643
No 355
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=33.79 E-value=1e+02 Score=28.05 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
..+...+.+.|+.+++.|.++|..+.....+++++..+|..-+
T Consensus 209 ~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V 251 (610)
T PRK09629 209 QDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRV 251 (610)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCc
Confidence 4567778888999999999999999888888999999997533
No 356
>PRK08638 threonine dehydratase; Validated
Probab=33.71 E-value=2.8e+02 Score=23.02 Aligned_cols=54 Identities=7% Similarity=-0.113 Sum_probs=41.3
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
+....+-.-..+.++|...|..+..+-|...+..-...++..+++++++.....
T Consensus 79 v~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 132 (333)
T PRK08638 79 VACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDNFN 132 (333)
T ss_pred EEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECcCHH
Confidence 344445556777888899998777777776777778899999999999976543
No 357
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=33.55 E-value=3.3e+02 Score=23.84 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=42.9
Q ss_pred eeHHHHHHHHHHH--------------H-HHHHhcCCCCCCEEEEEccCCHHHHHHHHH-HHHHCCeEeeC--C------
Q psy4550 40 ITFKQLDEWTDIV--------------G-TYLINQGCIVGSTVGVLMERCLEWTISYIA-IHKAGGGYLPL--E------ 95 (251)
Q Consensus 40 ~T~~~l~~~~~~~--------------a-~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a-~~~~G~~~v~i--~------ 95 (251)
-||.+|.+.+..+ | +.+...++++||.| ++ ..++...-+ +...|++++-+ +
T Consensus 71 ~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV----ps-n~~f~Tt~ahIe~~Gav~vDi~~dea~~~~ 145 (450)
T TIGR02618 71 RNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV----PG-NMYFTTTRYHQEKNGATFVDIIIDEAHDAQ 145 (450)
T ss_pred CcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE----CC-ceeHHHHHHHHHhCCeEEEeeecccccccc
Confidence 3777887776544 2 22445689999977 33 455555555 67888876666 2
Q ss_pred ---C---CCCHHHHHHHHhhc
Q psy4550 96 ---T---SYPPALLESVLDDA 110 (251)
Q Consensus 96 ---~---~~~~~~l~~~l~~~ 110 (251)
| ..+.+.+...++..
T Consensus 146 ~~~p~~GniD~~~Le~aI~~~ 166 (450)
T TIGR02618 146 LNIPFKGNVDLKKLQKLIDEV 166 (450)
T ss_pred cCCCCCCCcCHHHHHHHhccc
Confidence 1 24688899888754
No 358
>PRK06145 acyl-CoA synthetase; Validated
Probab=33.41 E-value=3.2e+02 Score=23.61 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=55.4
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+. ......++..++++....+-.-. +....++.+..|+..+.. +..++..+...+++.+++.+.
T Consensus 168 ~~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~~~~~t~~~ 243 (497)
T PRK06145 168 MHSYGNLHWKSI---DHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIH-REFDPEAVLAAIERHRLTCAW 243 (497)
T ss_pred EEecHHHHHHHH---HHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEEC-CcCCHHHHHHHHHHhCCeEEE
Confidence 488888865443 23445588899998877764322 122335566677766654 456889999999999999988
Q ss_pred Eccchhhh
Q psy4550 117 TKGEYMDR 124 (251)
Q Consensus 117 ~~~~~~~~ 124 (251)
..+.....
T Consensus 244 ~~P~~~~~ 251 (497)
T PRK06145 244 MAPVMLSR 251 (497)
T ss_pred ehHHHHHH
Confidence 87665443
No 359
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=33.37 E-value=1.5e+02 Score=26.16 Aligned_cols=80 Identities=9% Similarity=-0.002 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC--CH---HHHHHHHhhcCccE
Q psy4550 42 FKQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY--PP---ALLESVLDDAKPSI 114 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~--~~---~~l~~~l~~~~~~~ 114 (251)
+.++.++..++-..+++. .+....+..+..++...++.--+++-..|.+ -+++.. ++ .++...+++.++++
T Consensus 346 a~ay~~eL~~Ld~~~~~~la~ip~k~r~vvt~H~af~YLa~~YGL~~~~~~--~~~~~~ePS~~~L~~Li~~IK~~~V~~ 423 (479)
T TIGR03772 346 ASAYIHRLERLDTYVRRTIATIPPSRRHLITTHDAYSYLGQAYGLNIAGFV--TPNPAVEPSLADRRRLTRTIENLKVPA 423 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCEEEEECCcHHHHHHHCCCeEEeee--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 334444444444444333 2222346778888899988888877666522 233322 33 55666777889999
Q ss_pred EEEccchhh
Q psy4550 115 VITKGEYMD 123 (251)
Q Consensus 115 vi~~~~~~~ 123 (251)
||+++....
T Consensus 424 IF~Epq~~~ 432 (479)
T TIGR03772 424 VFLEPNLAA 432 (479)
T ss_pred EEEeCCCCC
Confidence 999887643
No 360
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=33.23 E-value=2.5e+02 Score=23.10 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=36.6
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+...++++|++|++... +.--..+...+...|+.++.++ .+++.+. .++..+++.++..
T Consensus 159 ~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~--~~~~~~~-~~~~~Ga~~~i~~ 217 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAID--IDPEKLE-MMKGFGADLTLNP 217 (349)
T ss_pred HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEc--CCHHHHH-HHHHhCCceEecC
Confidence 34457899999999998 5444444444555687555443 3455554 4466777777643
No 361
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=33.20 E-value=1e+02 Score=26.39 Aligned_cols=68 Identities=15% Similarity=-0.021 Sum_probs=48.2
Q ss_pred EEeccHHHHHHHHHHHHh---CCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 179 IVCPHRGAVHAYKWRHRA---YPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
..+|+..+...+..++.. .++.+++++.... .+...+++++..|+..+..+. .+.+..+-..+++.++
T Consensus 27 ~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~--~~~~~~~~~~~~~~~~ 101 (458)
T PRK09029 27 EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNP--QLPQPLLEELLPSLTL 101 (458)
T ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCC--CCCHHHHHHHHHhcCC
Confidence 357888887776655543 4788888876543 345567889999999998876 3677777777766554
No 362
>PRK13391 acyl-CoA synthetase; Provisional
Probab=33.11 E-value=2.8e+02 Score=24.13 Aligned_cols=64 Identities=6% Similarity=-0.003 Sum_probs=45.0
Q ss_pred cCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh
Q psy4550 59 QGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
.++.+++++....+-. ...+...++++..|+..+..+ ...++.+...++..+++++...+....
T Consensus 195 ~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~ 259 (511)
T PRK13391 195 WGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME-HFDAEQYLALIEEYGVTHTQLVPTMFS 259 (511)
T ss_pred cCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECC-CCCHHHHHHHHHHhCCeEEEehHHHHH
Confidence 4667777776555422 222344567888898877765 467889999999999999998776543
No 363
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=33.06 E-value=1.3e+02 Score=27.69 Aligned_cols=69 Identities=10% Similarity=-0.032 Sum_probs=50.4
Q ss_pred EEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 179 IVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
..+|...+...+..++. ..|+.++|++...+ -+....++++..|+..+.... .+.++++...++..++.
T Consensus 105 ~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~--~~~~~~l~~il~~s~~~ 180 (696)
T PLN02387 105 EWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYA--SLGEEALCHSLNETEVT 180 (696)
T ss_pred EEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecC--CCCHHHHHHHHHccCCC
Confidence 45788888776655554 55888999875533 345567889999999998886 47888888888776653
No 364
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=33.03 E-value=1.3e+02 Score=23.71 Aligned_cols=36 Identities=11% Similarity=-0.085 Sum_probs=25.7
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~ 75 (251)
=||.|+.+|+...-..+......+|+.|+++++..+
T Consensus 149 ES~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~v 184 (245)
T TIGR01258 149 ESLKDTIARVLPYWNDEIAPDLLSGKRVLIVAHGNS 184 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCCEEEEEcChHH
Confidence 488899999988766654333346788888888553
No 365
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=33.00 E-value=1.2e+02 Score=24.91 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCe-EeeCC
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGG-YLPLE 95 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~-~v~i~ 95 (251)
..++..|.+.|+.+++.|.+++.++..+ .-+++.+...|.. +..++
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~Ld 136 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLD 136 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcC
Confidence 5678889999999999999998776443 4556777778864 33444
No 366
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=32.97 E-value=1.8e+02 Score=20.68 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhc---CCCCCCEEEEEc-cCCHHH-HHHHHHHHHHCCeEeeCCCCC-------CHHHHHHHHhhcC
Q psy4550 44 QLDEWTDIVGTYLINQ---GCIVGSTVGVLM-ERCLEW-TISYIAIHKAGGGYLPLETSY-------PPALLESVLDDAK 111 (251)
Q Consensus 44 ~l~~~~~~~a~~L~~~---g~~~g~~V~l~~-~~~~~~-~~~~~a~~~~G~~~v~i~~~~-------~~~~l~~~l~~~~ 111 (251)
.+.+++..+-....+. ..-+|..|+++. .+|... +..-.|+.++|+.++-+++.. +.++..+++...
T Consensus 16 ~ll~~A~~lk~~~~~~~~~~~l~gk~v~~lF~e~StRTR~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~- 94 (142)
T PF02729_consen 16 ALLDLAKELKAAPKKGKPSQLLKGKTVALLFFEPSTRTRLSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRY- 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTTTTCEEEEEESS--HHHHHHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhhcCCCcccCCCCEEEEEecCCCchhhhhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHh-
Confidence 3444454444444443 244566665554 466666 556678999999999998654 346777788888
Q ss_pred ccEEEEcc
Q psy4550 112 PSIVITKG 119 (251)
Q Consensus 112 ~~~vi~~~ 119 (251)
+++|+.-.
T Consensus 95 ~D~iv~R~ 102 (142)
T PF02729_consen 95 VDAIVIRH 102 (142)
T ss_dssp CSEEEEEE
T ss_pred hheEEEEe
Confidence 77777643
No 367
>PRK13382 acyl-CoA synthetase; Provisional
Probab=32.96 E-value=3.4e+02 Score=23.88 Aligned_cols=83 Identities=7% Similarity=-0.002 Sum_probs=55.6
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|+..+...+.. .+...++.+++++....+-.-.+ +..+++.+..|+.++.. +..+++++...+++.+++++..
T Consensus 215 ~~s~~~~~~~~~~---~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~~~~vt~~~~ 290 (537)
T PRK13382 215 RRSGPGGIGTLKA---ILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTR-RRFDPEATLDLIDRHRATGLAV 290 (537)
T ss_pred EeccchHHHHHHH---HHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEEC-CCcCHHHHHHHHHHhCCEEEEe
Confidence 3666555444333 34445677889887666533222 33456677788877754 5678999999999999999998
Q ss_pred ccchhhhh
Q psy4550 118 KGEYMDRL 125 (251)
Q Consensus 118 ~~~~~~~~ 125 (251)
.+.....+
T Consensus 291 ~P~~~~~l 298 (537)
T PRK13382 291 VPVMFDRI 298 (537)
T ss_pred hHHHHHHH
Confidence 87765543
No 368
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=32.81 E-value=1.2e+02 Score=24.26 Aligned_cols=43 Identities=12% Similarity=0.012 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCe
Q psy4550 48 WTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGG 90 (251)
Q Consensus 48 ~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~ 90 (251)
....+...|.+.|+.+++.|.+++..... ...+.+.+...|..
T Consensus 71 ~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~ 114 (281)
T PRK11493 71 RPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVE 114 (281)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCC
Confidence 35678888999999999999999987543 33455667777855
No 369
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=32.75 E-value=1.5e+02 Score=22.08 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=19.1
Q ss_pred eeeHHHHHHHHHHHHHHHHhc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~ 59 (251)
-+|..|+.+++.++|..+.+.
T Consensus 8 l~~~~~i~~~i~~lA~~I~~~ 28 (178)
T PRK15423 8 MIPEAEIKARIAELGRQITER 28 (178)
T ss_pred ecCHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999885
No 370
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=32.74 E-value=1.2e+02 Score=24.14 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=38.6
Q ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCe---EeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 64 GSTVGVLMERCLEWTISYIAIHKAGGG---YLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 64 g~~V~l~~~~~~~~~~~~~a~~~~G~~---~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+.++.+-.-+..+.+. .|..+|.. .+.+.+.+|.+.=..++++.+++++||-+
T Consensus 150 ~~~~~~RvLP~~~~l~---~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~ 205 (256)
T TIGR00715 150 EAVVFVRVLPYPQALA---QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKA 205 (256)
T ss_pred CceEEEEECCCchhhH---HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 4555555555555554 66777764 67777888888888999999999999954
No 371
>PLN02970 serine racemase
Probab=32.54 E-value=2.9e+02 Score=22.83 Aligned_cols=54 Identities=11% Similarity=-0.125 Sum_probs=40.2
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
+....+---..+.++|...|..+..+-|...+++....++..+++++.++....
T Consensus 79 v~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~~~ 132 (328)
T PLN02970 79 VTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPTVE 132 (328)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCCHH
Confidence 344555566777888889998777666666666666789999999999987543
No 372
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=32.40 E-value=2.2e+02 Score=23.06 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=37.1
Q ss_pred HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 57 INQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 57 ~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
...++++|++|+|......-..+..+|....|+.++.+. .+++.... ++..+++.++..
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~--~~~~~~~~-~~~~g~~~v~~~ 214 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVD--INDDKLAL-AKEVGADLTINS 214 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEe--CChHHHHH-HHHcCCcEEecc
Confidence 345789999999998655566666666654577655553 23333333 366677776654
No 373
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=32.35 E-value=3.4e+02 Score=23.67 Aligned_cols=136 Identities=17% Similarity=0.146 Sum_probs=73.3
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC---CCCHHHHHHHHhhcCccEEEEccchhhhhh-----------
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET---SYPPALLESVLDDAKPSIVITKGEYMDRLE----------- 126 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----------- 126 (251)
+++||+|++=-|. +.-++-+....|..+++|+. ...++.+...++..+++++++.+.+.....
T Consensus 176 ~~pGd~v~vE~Pt---Y~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~L 252 (459)
T COG1167 176 LDPGDTVLVEDPT---YPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKAL 252 (459)
T ss_pred CCCCCEEEEcCCC---cHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHH
Confidence 4467887766552 33333334444555555443 556899999999999999999876432111
Q ss_pred -c--cCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCC--CCCCceEEeccHHHHHHHHHHHHhCCCC
Q psy4550 127 -R--TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGT--TGKPKGIVCPHRGAVHAYKWRHRAYPYD 200 (251)
Q Consensus 127 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt--TG~pK~v~~s~~~l~~~~~~~~~~~~~~ 200 (251)
+ ......+++++....+.-...... ....-..++.+.++--.|=| -|.--|.+.....++.............
T Consensus 253 l~lA~~~~~~IIEDD~y~el~~~~~p~~-~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~~~~~ 330 (459)
T COG1167 253 LALAEKYDVLIIEDDYYGELRYDGPPPP-PLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQAADLG 330 (459)
T ss_pred HHHHHHcCCeEEeeCcchhhhcCCCCCC-ChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHHHhcCC
Confidence 1 123344455555444443322211 01111223455555433433 3555677888877776666555544443
No 374
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=32.30 E-value=3e+02 Score=22.95 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCe
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGG 90 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~ 90 (251)
...+.+......+.-++.+.+.|..| ..+-.++.+.+..+-..+ .++-.|.+.++|...+ +.-.+++..+|+.
T Consensus 143 ~e~l~~~a~~~~~~Ga~~i~i~DT~G-~~~P~~v~~~v~~l~~~l-----~~~i~ig~H~HnnlGla~ANslaAi~aGa~ 216 (337)
T PRK08195 143 PEKLAEQAKLMESYGAQCVYVVDSAG-ALLPEDVRDRVRALRAAL-----KPDTQVGFHGHNNLGLGVANSLAAVEAGAT 216 (337)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCC-CCCHHHHHHHHHHHHHhc-----CCCCeEEEEeCCCcchHHHHHHHHHHhCCC
Confidence 34566666666666788888887666 588888888887766533 3556799999988765 6677888899977
Q ss_pred EeeCC--------CCCCHHHHHHHHhhcC
Q psy4550 91 YLPLE--------TSYPPALLESVLDDAK 111 (251)
Q Consensus 91 ~v~i~--------~~~~~~~l~~~l~~~~ 111 (251)
.+=.. -..+-+.+...++..+
T Consensus 217 ~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g 245 (337)
T PRK08195 217 RIDGSLAGLGAGAGNTPLEVLVAVLDRMG 245 (337)
T ss_pred EEEecChhhcccccCccHHHHHHHHHhcC
Confidence 54221 1234566666666544
No 375
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=32.26 E-value=1.4e+02 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=19.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~ 59 (251)
-+|+.|+.+++.++|..+.+.
T Consensus 27 lis~e~I~~~i~~LA~~I~~~ 47 (211)
T PTZ00271 27 LVTQEQVWAATAKCAKKIAED 47 (211)
T ss_pred ecCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999875
No 376
>COG2746 Aminoglycoside N3'-acetyltransferase [Defense mechanisms]
Probab=32.20 E-value=58 Score=25.63 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCC
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~ 74 (251)
..+...|.++|+++|+.|.+.+..+
T Consensus 15 ~~l~~~l~~lG~k~G~~v~vHssl~ 39 (251)
T COG2746 15 QDLKDDLYKLGLKEGDTVIVHSSLS 39 (251)
T ss_pred HHHHHHHHHhcCCCCCEEEEehhhh
Confidence 4455668888999999999988765
No 377
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=32.19 E-value=1.1e+02 Score=20.37 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhCCCceEEEecCCC----------eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHH
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHDGR----------SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~~~----------~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a 83 (251)
.+...+-+...+...++.+++.+.. .+-|++..+ -..|++.|+..-+.|.+..++....+.+...
T Consensus 8 ~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~-----~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~ 82 (116)
T PF02254_consen 8 RIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATD-----PEVLERAGIEKADAVVILTDDDEENLLIALL 82 (116)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTS-----HHHHHHTTGGCESEEEEESSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchh-----hhHHhhcCccccCEEEEccCCHHHHHHHHHH
Confidence 4555555666664446777753321 111122111 1336677777777888888877777777666
Q ss_pred HHHHCC-eEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 84 IHKAGG-GYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 84 ~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+...+- ..+. ......+....++..+++.++.
T Consensus 83 ~r~~~~~~~ii--~~~~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 83 ARELNPDIRII--ARVNDPENAELLRQAGADHVIS 115 (116)
T ss_dssp HHHHTTTSEEE--EEESSHHHHHHHHHTT-SEEEE
T ss_pred HHHHCCCCeEE--EEECCHHHHHHHHHCCcCEEEC
Confidence 666443 2221 2234455566677788877764
No 378
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=32.09 E-value=1.6e+02 Score=19.80 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=30.6
Q ss_pred HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
..+...|.-++-+.+..+.+++...+.+.++++|..+.
T Consensus 21 ~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 21 RALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 33444678888888889999999999999999888754
No 379
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=31.99 E-value=1.8e+02 Score=22.56 Aligned_cols=55 Identities=7% Similarity=-0.182 Sum_probs=38.5
Q ss_pred hcCCCCCCEEEEEccCCH----HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCc
Q psy4550 58 NQGCIVGSTVGVLMERCL----EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKP 112 (251)
Q Consensus 58 ~~g~~~g~~V~l~~~~~~----~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~ 112 (251)
.-|+.+|+.+.|..++.. -..-.++.....|-.++-+...-+++++.+.++..+.
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGW 73 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCC
Confidence 459999999999999885 2222234444668777777777788887777665543
No 380
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=31.96 E-value=62 Score=21.36 Aligned_cols=49 Identities=16% Similarity=-0.002 Sum_probs=33.6
Q ss_pred EEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH
Q psy4550 32 VVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84 (251)
Q Consensus 32 ~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~ 84 (251)
+.|.+|.-|...+....+..+.+.|++.| .++.++..|+......+..-
T Consensus 2 l~D~dGvl~~g~~~ipga~e~l~~L~~~g----~~~~~lTNns~~s~~~~~~~ 50 (101)
T PF13344_consen 2 LFDLDGVLYNGNEPIPGAVEALDALRERG----KPVVFLTNNSSRSREEYAKK 50 (101)
T ss_dssp EEESTTTSEETTEE-TTHHHHHHHHHHTT----SEEEEEES-SSS-HHHHHHH
T ss_pred EEeCccEeEeCCCcCcCHHHHHHHHHHcC----CCEEEEeCCCCCCHHHHHHH
Confidence 44778877888888888888888898875 56888888875554443333
No 381
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=31.82 E-value=2.4e+02 Score=23.13 Aligned_cols=58 Identities=9% Similarity=-0.067 Sum_probs=36.5
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+...++++|++|+|...-..-..+ ...+...|+.++.+.. +++. ..++++.+++.++.
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a-~~~a~~~G~~vi~~~~--~~~~-~~~a~~~Ga~~vi~ 215 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLT-AQVALAQGATVHVMTR--GAAA-RRLALALGAASAGG 215 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHH-HHHHHHCCCeEEEEeC--ChHH-HHHHHHhCCceecc
Confidence 344678999999999874444443 3444556775554432 3333 45677788887774
No 382
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=31.79 E-value=2.1e+02 Score=22.63 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH
Q psy4550 16 HYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84 (251)
Q Consensus 16 ~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~ 84 (251)
.+.+.+..+..|. +..+.++...|.....+|+ .++.++|--.|.+|.++.++..-.+++.+-.
T Consensus 3 l~~~~~i~~~RP~--~~~~~DQ~~~T~eT~~~Ra----~~~~~~gdL~gk~il~lGDDDLtSlA~al~~ 65 (243)
T PF01861_consen 3 LEKFSEIVKNRPE--PDVELDQGYATPETTLRRA----ALMAERGDLEGKRILFLGDDDLTSLALALTG 65 (243)
T ss_dssp HHHHHHHHTT-------GGGT---B-HHHHHHHH----HHHHHTT-STT-EEEEES-TT-HHHHHHHHT
T ss_pred HHHHHHHHHcCCC--CccccccccccHHHHHHHH----HHHHhcCcccCCEEEEEcCCcHHHHHHHhhC
Confidence 4556666666663 2224566668887777766 5566777667999999998876666665433
No 383
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=31.65 E-value=2.9e+02 Score=22.66 Aligned_cols=52 Identities=8% Similarity=-0.132 Sum_probs=40.0
Q ss_pred EccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 70 LMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 70 ~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
....+-.-..+.++|...|..++.+-|...++.-...++..++++++++..+
T Consensus 72 ~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~~~ 123 (317)
T TIGR02991 72 AASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRSQ 123 (317)
T ss_pred EECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCCCH
Confidence 4444555667778888999888777776667777888999999999998653
No 384
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=31.51 E-value=3.7e+02 Score=23.84 Aligned_cols=51 Identities=8% Similarity=0.012 Sum_probs=39.4
Q ss_pred ccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 71 ~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
+..+=-...+.++|...|..++.+-|..++..-...++..+++++++.+.+
T Consensus 71 aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~~ 121 (499)
T TIGR01124 71 ASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGANF 121 (499)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCcCH
Confidence 444444566777888999888777777777777788999999999997654
No 385
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=31.32 E-value=3.3e+02 Score=23.11 Aligned_cols=89 Identities=12% Similarity=0.033 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCe
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGG 90 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~ 90 (251)
..-+.+++....+..++++.+.|..| ..+-.++.+.+..+...+ + -.+.+.++|.... +...++++.+|+.
T Consensus 144 ~~~l~~~~~~~~~~Ga~~I~l~DT~G-~~~P~~v~~lv~~l~~~~---~----~~l~~H~Hnd~GlA~AN~laAv~aGa~ 215 (378)
T PRK11858 144 LDFLIEFAKAAEEAGADRVRFCDTVG-ILDPFTMYELVKELVEAV---D----IPIEVHCHNDFGMATANALAGIEAGAK 215 (378)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCC-CCCHHHHHHHHHHHHHhc---C----CeEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 34566677766666778888887666 478888888777765544 2 3599999988766 5678888999976
Q ss_pred EeeC--CC------CCCHHHHHHHHh
Q psy4550 91 YLPL--ET------SYPPALLESVLD 108 (251)
Q Consensus 91 ~v~i--~~------~~~~~~l~~~l~ 108 (251)
.+=. +. ..+-+++...++
T Consensus 216 ~vd~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 216 QVHTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred EEEEeeccccccccCccHHHHHHHHH
Confidence 5532 21 234566666665
No 386
>PRK07050 cystathionine beta-lyase; Provisional
Probab=31.06 E-value=2.9e+02 Score=23.50 Aligned_cols=25 Identities=8% Similarity=-0.094 Sum_probs=14.6
Q ss_pred CCCceEEec-cHHHHHHHHHHHHhCC
Q psy4550 174 GKPKGIVCP-HRGAVHAYKWRHRAYP 198 (251)
Q Consensus 174 G~pK~v~~s-~~~l~~~~~~~~~~~~ 198 (251)
+.+-|++++ .+.+...++......|
T Consensus 218 ~~~gG~v~~~~~~~~~~~~~~~~~~G 243 (394)
T PRK07050 218 DVLMGATITADAELHAKLKLARMRLG 243 (394)
T ss_pred CeeEEEEEECCHHHHHHHHHHHHhcC
Confidence 345776665 4566666665555444
No 387
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.56 E-value=3.9e+02 Score=23.80 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=33.3
Q ss_pred CCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCC--HHHHHHHHhhcCccEEEEc
Q psy4550 63 VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP--PALLESVLDDAKPSIVITK 118 (251)
Q Consensus 63 ~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~--~~~l~~~l~~~~~~~vi~~ 118 (251)
.|.+|+|+.+.+.-+-+.-+....+|..++....... .+.+...++.....+++.+
T Consensus 304 ~Gkrv~I~gd~~~a~~l~~~L~~ELGm~vv~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 361 (513)
T CHL00076 304 TGKKAVVFGDATHAASMTKILAREMGIRVSCAGTYCKHDAEWFKEQVQGFCDEILITD 361 (513)
T ss_pred CCCEEEEEcCchHHHHHHHHHHHhCCCEEEEecCcccchhHHHHHHHHHhccCcEEec
Confidence 5889999998766666565666788988875533221 2333344444444445544
No 388
>PRK08197 threonine synthase; Validated
Probab=30.45 E-value=2.4e+02 Score=23.99 Aligned_cols=53 Identities=9% Similarity=-0.061 Sum_probs=35.7
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
+....+---..+.+++...|..+..+-|...++.-...++..+++++.++...
T Consensus 131 v~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~~ 183 (394)
T PRK08197 131 AMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDGLI 183 (394)
T ss_pred EEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 33344444455566677788766666555555666788999999999997643
No 389
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=30.38 E-value=2.2e+02 Score=24.11 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=29.2
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+.-......+-.....++ .+..++ ....+.+...++. ++++|+..
T Consensus 88 ~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-~~d~e~l~~~l~~-~tklV~l~ 144 (386)
T PRK08045 88 LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-QGDEQALRAALAE-KPKLVLVE 144 (386)
T ss_pred cCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-CCCHHHHHHhccc-CCeEEEEE
Confidence 46788877665544433333333333344 333343 3456667666643 56666653
No 390
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=30.26 E-value=1.5e+02 Score=24.46 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=27.0
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeec
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLE 136 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 136 (251)
+|.+.+. ..+.....++..++++||.|+.+...........+.++
T Consensus 102 ~V~V~~d-R~~a~~~~~~~~~~dviilDDGfQh~~l~rD~~IvlvD 146 (311)
T TIGR00682 102 TVVASKD-RKDAILLILEQLDPDVIILDDGLQHRKLHRDVEIVVVD 146 (311)
T ss_pred cEEEeCh-HHHHHHHHHhcCCCCEEEECCCCcCccccCCeEEEEEC
Confidence 4445432 33445555666689999999987665444444444443
No 391
>PF09351 DUF1993: Domain of unknown function (DUF1993); InterPro: IPR018531 This family of proteins are functionally uncharacterised. ; PDB: 2OQM_C 3QTH_A.
Probab=29.88 E-value=1.3e+02 Score=22.04 Aligned_cols=58 Identities=19% Similarity=0.128 Sum_probs=38.0
Q ss_pred cCCCeeeHHHHHHHHHHHHHHHHhcC-----CCCCCEEEE------------------EccCCHHHHHHHHHHHHHCCeE
Q psy4550 35 HDGRSITFKQLDEWTDIVGTYLINQG-----CIVGSTVGV------------------LMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 35 ~~~~~~T~~~l~~~~~~~a~~L~~~g-----~~~g~~V~l------------------~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
.++..-|+.++.+++.+....|.+.. -..+..|.+ .+||-..++.+.++++|..+++
T Consensus 75 ~~~~~~tfa~L~~ri~~ti~~L~~~~~~~~~~~~~~~v~~~~~~~~~~~tg~~y~~~falPNfyFH~ttAYaILR~~GV~ 154 (162)
T PF09351_consen 75 FEDNETTFAELQARIAKTIAYLESIDPDAFDGAEDRTVTLPGGGKELDFTGEDYLLSFALPNFYFHLTTAYAILRHKGVP 154 (162)
T ss_dssp --S--SSHHHHHHHHHHHHHHHHCS-GGGHCCCCT-EEEECECCCCEEEEHHHHHHHTHHHHHHHHHHHHHHHHHHCT--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCHHHhCcccCCeEEecCCCccccccHHHHHHHhcccHHHHHHHHHHHHHHhcCCC
Confidence 34556899999999999999997751 112334444 3567777888999999988775
Q ss_pred e
Q psy4550 92 L 92 (251)
Q Consensus 92 v 92 (251)
+
T Consensus 155 l 155 (162)
T PF09351_consen 155 L 155 (162)
T ss_dssp -
T ss_pred C
Confidence 4
No 392
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=29.66 E-value=56 Score=22.43 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=39.4
Q ss_pred eHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEccCCHHHHHHH--HHHHHH-CCeEeeC
Q psy4550 41 TFKQLDEWTDIVGTYL-INQGCIVGSTVGVLMERCLEWTISY--IAIHKA-GGGYLPL 94 (251)
Q Consensus 41 T~~~l~~~~~~~a~~L-~~~g~~~g~~V~l~~~~~~~~~~~~--~a~~~~-G~~~v~i 94 (251)
|-.++.+.+..+-..+ ++.++.+.|.|.++..-..+.-..| .|+-.. |...||+
T Consensus 14 t~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~Gw~~Vpl 71 (117)
T TIGR01796 14 EAEEIGEAVAELLTELMERNELTPEDLISVIFTVTEDLHADFPAAAARGLPGWTDVPV 71 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCcccccChHHHHHhccCCCCcce
Confidence 5678888888877665 4468999999999988776654444 555566 7777776
No 393
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.60 E-value=3.1e+02 Score=23.73 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=29.9
Q ss_pred CCCCCEEEEEccCCHHHHHH-HHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTIS-YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~-~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+.-...... --.+...|+.++.++. .+.+++...++. ++++|+..
T Consensus 100 l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~-~d~e~l~~ai~~-~tklV~l~ 156 (431)
T PRK08248 100 ASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP-SDPENFEAAITD-KTKALFAE 156 (431)
T ss_pred hCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC-CCHHHHHHhcCC-CCeEEEEE
Confidence 56788776554322111111 1234456777776654 356667766654 55666553
No 394
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=29.47 E-value=66 Score=24.73 Aligned_cols=29 Identities=14% Similarity=-0.009 Sum_probs=21.1
Q ss_pred CCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 60 GCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
..++||.++|+.+|..+.+-.++..+...
T Consensus 41 ~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~ 69 (219)
T PF00667_consen 41 SYQPGDHLGVYPPNDPEEVERLLKRLGLD 69 (219)
T ss_dssp ---TT-EEEEE-SSEHHHHHHHHHHHTSG
T ss_pred cccCCCEEEEEccCCHHHHHHHHHHhCCC
Confidence 46799999999999999999988876553
No 395
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=29.43 E-value=1.8e+02 Score=19.40 Aligned_cols=47 Identities=13% Similarity=0.011 Sum_probs=33.2
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.+.+.++.+ .+...+..+++.|.++|.++...-.+...+...|...+
T Consensus 42 niP~~~l~~-------~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v 88 (104)
T PRK10287 42 NIPLKEVKE-------RIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHA 88 (104)
T ss_pred ECCHHHHHH-------HHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCeE
Confidence 466766543 34455555677899999998887777777788887554
No 396
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=29.32 E-value=3.2e+02 Score=22.42 Aligned_cols=57 Identities=12% Similarity=0.013 Sum_probs=32.2
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCe--EeeCCC--CCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGG--YLPLET--SYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~--~v~i~~--~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++|+.|.+..+...... ..-++...|+. .+++++ ..+.+++...++..++++|+..
T Consensus 71 ~~~g~~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~ 131 (356)
T cd06451 71 LEPGDKVLVGVNGVFGDR-WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLT 131 (356)
T ss_pred CCCCCEEEEecCCchhHH-HHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEe
Confidence 357888877655443321 12334556654 444443 3457788887765566666553
No 397
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=29.30 E-value=67 Score=20.43 Aligned_cols=23 Identities=13% Similarity=-0.130 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
-.++..+++..+++||+|+++.-
T Consensus 55 ~~L~~~~~~g~~~~Gd~vl~~~~ 77 (90)
T PF08541_consen 55 INLADALEEGRIKPGDRVLLVGF 77 (90)
T ss_dssp HHHHHHHHTTSSCTTEEEEEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEE
Confidence 34556677777999999998753
No 398
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=29.20 E-value=3.5e+02 Score=22.78 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~ 91 (251)
.-+.++.....+..++++.+.|..| ..+-.++.+.+..+...+ + -.+.+.++|.... +...++++.+|+..
T Consensus 142 ~~l~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv~~l~~~~---~----v~l~~H~HNd~GlA~ANalaA~~aGa~~ 213 (365)
T TIGR02660 142 DFLVELAEVAAEAGADRFRFADTVG-ILDPFSTYELVRALRQAV---D----LPLEMHAHNDLGMATANTLAAVRAGATH 213 (365)
T ss_pred HHHHHHHHHHHHcCcCEEEEcccCC-CCCHHHHHHHHHHHHHhc---C----CeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 4556666666666678888877556 477788887776665433 2 3589999988665 66788889999865
Q ss_pred ee--CCC------CCCHHHHHHHH-hhcCcc
Q psy4550 92 LP--LET------SYPPALLESVL-DDAKPS 113 (251)
Q Consensus 92 v~--i~~------~~~~~~l~~~l-~~~~~~ 113 (251)
+= ++. ..+-+++...+ ...+..
T Consensus 214 vd~tl~GiGeraGN~~lE~lv~~L~~~~g~~ 244 (365)
T TIGR02660 214 VNTTVNGLGERAGNAALEEVAMALKRLLGRD 244 (365)
T ss_pred EEEEeeccccccccCCHHHHHHHHHHhcCCC
Confidence 53 221 34567777767 444443
No 399
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=29.19 E-value=2.6e+02 Score=23.60 Aligned_cols=59 Identities=7% Similarity=-0.078 Sum_probs=42.8
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-----CC---HHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-----YP---PALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-----~~---~~~l~~~l~~~~~~~vi~~~ 119 (251)
++++++|++.++-+.|..++.+-+...|.-++.+.-. .+ .+....+.+..+....+.+-
T Consensus 2 ~~~~~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~ 68 (360)
T PRK14665 2 MEKNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDA 68 (360)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEec
Confidence 4678999999999999999888888888655544221 12 23356788888888777653
No 400
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=29.15 E-value=1.5e+02 Score=22.94 Aligned_cols=35 Identities=17% Similarity=-0.072 Sum_probs=24.8
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~ 74 (251)
=|+.++.+|+.+.-..+......+|+.|+|+++..
T Consensus 149 Es~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHgg 183 (227)
T PRK14118 149 ENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGN 183 (227)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHH
Confidence 48899999998876655432224577888888755
No 401
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=29.09 E-value=1.4e+02 Score=25.98 Aligned_cols=69 Identities=12% Similarity=-0.123 Sum_probs=47.6
Q ss_pred EEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 179 IVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
-.+|...+...+...+. ..++.++|++.... .+...+++++..|+..+..+. .+....+.+.+++.+++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~--~~~~~~~~~~~~~~~~~ 85 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINW--HLTAAEIAYIVDDSGAK 85 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEeccc--ccCHHHHHHHHhcCCCC
Confidence 34777777655544443 45788899886543 345568889999998888876 36777777777776653
No 402
>PRK08005 epimerase; Validated
Probab=28.97 E-value=2.7e+02 Score=21.42 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 52 VGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 52 ~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+...+.+.| .|.|.+-.+.+....-.+-.+...|+ .-+.++|..+.+.+..++...+--+|.+
T Consensus 73 ~i~~~~~~g---ad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMs 136 (210)
T PRK08005 73 WLPWLAAIR---PGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMT 136 (210)
T ss_pred HHHHHHHhC---CCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEE
Confidence 334445555 46788887766555555555666664 6677888888888888888666555554
No 403
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=28.76 E-value=2e+02 Score=24.04 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=33.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC------CCHHHHHHHHhh------cCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS------YPPALLESVLDD------AKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~------~~~~~l~~~l~~------~~~~~vi~ 117 (251)
+++||.|.+-.+++.. .+.++...|+.+..++.. .+.+++...++. .++++|+.
T Consensus 87 ~~~gd~Vl~~~~~h~s---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~ 152 (370)
T TIGR02539 87 CKEGDWVVLDGLAHYT---SYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALL 152 (370)
T ss_pred hCCCCEEEECCcccHH---HHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEE
Confidence 3678888774444332 235677888877766543 367888887753 24556664
No 404
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=28.60 E-value=3.1e+02 Score=21.97 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=44.8
Q ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 64 g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
++.| +....+---..+.++|...|..++.+-|...++.-...++..+++++.+...
T Consensus 56 ~~~v-v~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 111 (306)
T PF00291_consen 56 GRTV-VGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD 111 (306)
T ss_dssp TSEE-EEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST
T ss_pred ccee-eeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEcccc
Confidence 4556 6666676777788889899998888878778888888999999999987653
No 405
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=28.57 E-value=65 Score=20.59 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=22.6
Q ss_pred cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC
Q psy4550 35 HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 35 ~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~ 74 (251)
.+|.++++.-|+.. .+++++|++.||.|.+.-.+.
T Consensus 29 l~G~~VsratLhN~-----~~i~~~~i~~Gd~V~V~raGd 63 (82)
T PF03120_consen 29 LDGTTVSRATLHNY-----DYIKELDIRIGDTVLVTRAGD 63 (82)
T ss_dssp CTTCEEEEEE--SH-----HHHHHTT-BBT-EEEEEEETT
T ss_pred ECCeEEEEEEecCH-----HHHHHcCCCCCCEEEEEECCC
Confidence 46777776666543 567889999999999876543
No 406
>KOG0387|consensus
Probab=28.51 E-value=3e+02 Score=26.06 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=63.1
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHH--HCCeEeeCCCCCCHHHHHHHHhhcC----ccEEE-Eccch-h-hhhhccCCC
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHK--AGGGYLPLETSYPPALLESVLDDAK----PSIVI-TKGEY-M-DRLERTSVP 131 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~--~G~~~v~i~~~~~~~~l~~~l~~~~----~~~vi-~~~~~-~-~~~~~~~~~ 131 (251)
.+.|++|.++.... ..+-.+--++. -|..++=++-..+...-..++++++ ..+.+ |+..- + -.+. ..-+
T Consensus 543 ~kqg~rvllFsqs~-~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLT-gAnR 620 (923)
T KOG0387|consen 543 KKQGDRVLLFSQSR-QMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLT-GANR 620 (923)
T ss_pred hhCCCEEEEehhHH-HHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccc-cCce
Confidence 56789998887644 44444444444 5889999998888777666776665 22222 22110 0 0011 1235
Q ss_pred eeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCC
Q psy4550 132 KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTG 174 (251)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG 174 (251)
.++.+.+|......+.... ........+-+.|-+.|+||--
T Consensus 621 VIIfDPdWNPStD~QAreR--awRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 621 VIIFDPDWNPSTDNQARER--AWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred EEEECCCCCCccchHHHHH--HHhhcCccceEEEEEecCCcHH
Confidence 6677777775555444321 2233344456678888999864
No 407
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=28.51 E-value=2.6e+02 Score=21.10 Aligned_cols=85 Identities=14% Similarity=0.034 Sum_probs=57.4
Q ss_pred cCCCeeeHHHHHHHHHHHHHHHHhc-------CCCCCCEEEEEccCCHH----HHHHHHHHHHHCCeEeeCCCCCCHHHH
Q psy4550 35 HDGRSITFKQLDEWTDIVGTYLINQ-------GCIVGSTVGVLMERCLE----WTISYIAIHKAGGGYLPLETSYPPALL 103 (251)
Q Consensus 35 ~~~~~~T~~~l~~~~~~~a~~L~~~-------g~~~g~~V~l~~~~~~~----~~~~~~a~~~~G~~~v~i~~~~~~~~l 103 (251)
|+..+++..|..-.+..+-..+... +..++-+|.+.+..+-. .......+...|.-++-+-...+.+++
T Consensus 46 w~~~~i~va~e~~as~~~~~~l~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 46 YEEGEIFVPELLMAADAMKAGLDLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred HccCCeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 4445688888877766655544332 22124466666655422 333444555678888888899999999
Q ss_pred HHHHhhcCccEEEEcc
Q psy4550 104 ESVLDDAKPSIVITKG 119 (251)
Q Consensus 104 ~~~l~~~~~~~vi~~~ 119 (251)
...+.+.++++|..+-
T Consensus 126 ~~~~~~~~~d~v~lS~ 141 (201)
T cd02070 126 VEAVKEHKPDILGLSA 141 (201)
T ss_pred HHHHHHcCCCEEEEec
Confidence 9999999999988764
No 408
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=28.45 E-value=2.5e+02 Score=22.92 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=34.7
Q ss_pred CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhc----CccEEEEc
Q psy4550 62 IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDA----KPSIVITK 118 (251)
Q Consensus 62 ~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~----~~~~vi~~ 118 (251)
++||.|.+-- +.+.....++...|+.++++. ....+++..+++.. ...++++.
T Consensus 83 ~~gd~Vl~~~---~~~~~~~~~~~~~g~~~~~~~-~~~~~~le~~i~~~~~~~~~~~v~~~ 139 (349)
T cd06454 83 GKGDLIISDS---LNHASIIDGIRLSGAKKRIFK-HNDMEDLEKLLREARRPYGKKLIVTE 139 (349)
T ss_pred CCCCEEEEeh---hhhHHHHHHHHHcCCceEEec-CCCHHHHHHHHHHhhccCCCeEEEEe
Confidence 6789887643 345555566777888777664 35667888888763 35556653
No 409
>PRK13578 ornithine decarboxylase; Provisional
Probab=28.31 E-value=2.6e+02 Score=26.19 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=34.4
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC---------CH-----HHHHHHHhhc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY---------PP-----ALLESVLDDA 110 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~---------~~-----~~l~~~l~~~ 110 (251)
+++||.| |+-+|+-..+.-- |+..+|+.++-+.|.. ++ +.+...++..
T Consensus 211 ~~~Gd~V-LvdRN~HKSv~hg-aLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~ 272 (720)
T PRK13578 211 LTPGDLV-LFDRNNHKSNHHG-ALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREV 272 (720)
T ss_pred cCCCCEE-EeecccHHHHHHH-HHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhc
Confidence 6789977 5777877764432 6899999999987754 33 3378777765
No 410
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=28.28 E-value=2.8e+02 Score=21.33 Aligned_cols=86 Identities=8% Similarity=0.064 Sum_probs=58.2
Q ss_pred cCCCeeeHHHHHHHHHHHHHHHH-------hcC-C-CCCCEEEEEccCC----HHHHHHHHHHHHHCCeEeeCCCCCCHH
Q psy4550 35 HDGRSITFKQLDEWTDIVGTYLI-------NQG-C-IVGSTVGVLMERC----LEWTISYIAIHKAGGGYLPLETSYPPA 101 (251)
Q Consensus 35 ~~~~~~T~~~l~~~~~~~a~~L~-------~~g-~-~~g~~V~l~~~~~----~~~~~~~~a~~~~G~~~v~i~~~~~~~ 101 (251)
++..+++-.|.+-.++.+...+. ... . +..-+|.+.+..+ +-..+.-.-+...|.-++-+-...+.+
T Consensus 50 w~~gei~vaqe~~as~~~~~~l~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e 129 (213)
T cd02069 50 FGAGKMFLPQVLKSARVMKAAVAYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIE 129 (213)
T ss_pred HccCCCcHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHH
Confidence 34456887787766655554432 222 1 1234566666654 333445555667899999999999999
Q ss_pred HHHHHHhhcCccEEEEccc
Q psy4550 102 LLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 102 ~l~~~l~~~~~~~vi~~~~ 120 (251)
++...+.+.++++|..+.-
T Consensus 130 ~~v~~~~~~~~~~V~lS~~ 148 (213)
T cd02069 130 KILEAAKEHKADIIGLSGL 148 (213)
T ss_pred HHHHHHHHcCCCEEEEccc
Confidence 9999999999999987643
No 411
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=28.19 E-value=1.6e+02 Score=22.49 Aligned_cols=55 Identities=18% Similarity=-0.043 Sum_probs=38.5
Q ss_pred hcCCCCCCEEEEEccCCH----HHHHHHHHHHHH-CCeEeeCCCCCCHHHHHHHHhhcCc
Q psy4550 58 NQGCIVGSTVGVLMERCL----EWTISYIAIHKA-GGGYLPLETSYPPALLESVLDDAKP 112 (251)
Q Consensus 58 ~~g~~~g~~V~l~~~~~~----~~~~~~~a~~~~-G~~~v~i~~~~~~~~l~~~l~~~~~ 112 (251)
.-|+.+|..+++..++.. -..-.+++.... |-.++-+....+++++...++..+.
T Consensus 13 ~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 13 GGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGW 72 (226)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS
T ss_pred cCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCC
Confidence 458999999999999884 333344455555 8888888888888888888877664
No 412
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=27.96 E-value=2.9e+02 Score=21.46 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=43.3
Q ss_pred HHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 52 VGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 52 ~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+...+.+.| .|.|.+....+....-++-.+...|+ .-+.++|..+.+.+..++...+.-++.+
T Consensus 77 ~i~~~~~~g---ad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMt 140 (223)
T PRK08745 77 IVPDFADAG---ATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMS 140 (223)
T ss_pred HHHHHHHhC---CCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEE
Confidence 334444555 56788888866555555566666774 6677888888888888888777656655
No 413
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.85 E-value=1.7e+02 Score=23.20 Aligned_cols=79 Identities=8% Similarity=0.040 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCH---HHHHHHHhhcCccEEE
Q psy4550 42 FKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPP---ALLESVLDDAKPSIVI 116 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~---~~l~~~l~~~~~~~vi 116 (251)
+..+.++...+-..+++.--....+..+...+...++.-.+++-..+.. .+ .-++ .++...+++.++++||
T Consensus 147 ~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~H~af~Y~~~~ygl~~~~~~----~~~~eps~~~l~~l~~~ik~~~v~~if 222 (266)
T cd01018 147 LDALLAELDALDSEIRTILSKLKQRAFMVYHPAWGYFARDYGLTQIPIE----EEGKEPSPADLKRLIDLAKEKGVRVVF 222 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCeEEEECchhHHHHHHcCCEEEecC----CCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3444444444444444431011235566777777777766655544321 12 2233 5566677888999999
Q ss_pred Eccchhhh
Q psy4550 117 TKGEYMDR 124 (251)
Q Consensus 117 ~~~~~~~~ 124 (251)
+++....+
T Consensus 223 ~e~~~~~~ 230 (266)
T cd01018 223 VQPQFSTK 230 (266)
T ss_pred EcCCCCcH
Confidence 98765443
No 414
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=27.69 E-value=3.3e+02 Score=21.94 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=44.1
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe--eCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYL--PLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v--~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
-=.|-+|+.+++=..+...++..+..+|+-+. .-||..+.++....|...++.+.-.-.
T Consensus 40 Pl~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~g 100 (268)
T PF05221_consen 40 PLKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKG 100 (268)
T ss_dssp TTTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT
T ss_pred CCCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEEeCC
Confidence 33589999999999999999999999998554 557888999999999988886665433
No 415
>PRK06352 threonine synthase; Validated
Probab=27.18 E-value=3e+02 Score=22.99 Aligned_cols=89 Identities=10% Similarity=-0.092 Sum_probs=49.9
Q ss_pred CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC-CHHHHHHH
Q psy4550 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY-PPALLESV 106 (251)
Q Consensus 28 ~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~l~~~ 106 (251)
-++.+.. ++..-|.+-=.+.+..+...+.+.|. +.| +....+=.-..+.+++...|..+..+-|.. .+..-...
T Consensus 43 ~~l~~K~-E~~nptGS~KdR~a~~~i~~a~~~g~---~~v-V~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~ 117 (351)
T PRK06352 43 VTLYGKY-EGLNPTGSFKDRGMVMAVAKAKEEGA---EAV-ICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQ 117 (351)
T ss_pred CeEEEEe-cCCCCccChHHHHHHHHHHHHHHCCC---CEE-EEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHH
Confidence 4566664 33222332222333333333445552 233 333333334667778888898777777764 35556667
Q ss_pred HhhcCccEEEEccch
Q psy4550 107 LDDAKPSIVITKGEY 121 (251)
Q Consensus 107 l~~~~~~~vi~~~~~ 121 (251)
++..+++++++...+
T Consensus 118 ~~a~GA~V~~~~~~~ 132 (351)
T PRK06352 118 AVMYGADIISIQGNF 132 (351)
T ss_pred HHhcCCEEEEECCCH
Confidence 789999999997643
No 416
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.09 E-value=3.9e+02 Score=23.82 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=28.9
Q ss_pred CCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC--CHHHHHHHHhhcCccEEEE
Q psy4550 63 VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY--PPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 63 ~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~--~~~~l~~~l~~~~~~~vi~ 117 (251)
.|.+|+|+.+.....-+.-+..-.+|..++.+-... ..+.+...++.....+++.
T Consensus 292 ~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~ 348 (519)
T PRK02910 292 TGKRVFVFGDATHAVAAARILSDELGFEVVGAGTYLREDARWVRAAAKEYGDEALIT 348 (519)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEecCCcchhHHHHHHHHhcCCCeEEe
Confidence 477888888755444444444445787766543211 1333444444444444443
No 417
>PRK07591 threonine synthase; Validated
Probab=26.99 E-value=3e+02 Score=23.74 Aligned_cols=87 Identities=16% Similarity=0.030 Sum_probs=51.6
Q ss_pred ceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHH
Q psy4550 29 KIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVL 107 (251)
Q Consensus 29 ~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l 107 (251)
++.+.+.. +-+-|+++- .+........+.|. +.| +....+=--..+..+|...|..+..+-|...+..-...+
T Consensus 106 ~l~~K~E~~nPtGSfKdR--ga~~~v~~A~~~g~---~~v-v~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~ 179 (421)
T PRK07591 106 NLYIKDDSVNPTHSFKDR--VVSVALTAARELGF---TTV-ACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGT 179 (421)
T ss_pred cEEEEeCCCCCccChHHH--HHHHHHHHHHHcCC---CEE-EEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHH
Confidence 56666422 234455552 12222233444553 344 445555555666777778898666666655555666777
Q ss_pred hhcCccEEEEccch
Q psy4550 108 DDAKPSIVITKGEY 121 (251)
Q Consensus 108 ~~~~~~~vi~~~~~ 121 (251)
+..+++++.++..+
T Consensus 180 ~~~GA~Vi~v~g~~ 193 (421)
T PRK07591 180 LVYGPTLVAVDGNY 193 (421)
T ss_pred HHcCCEEEEECCCH
Confidence 89999999998653
No 418
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=26.96 E-value=4.2e+02 Score=22.99 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=39.6
Q ss_pred cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh
Q psy4550 59 QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
.|+..|++++++..-+....-. +......+...+...+.++....|+..++++++..+....
T Consensus 138 ~g~~~g~r~a~~~~~~~~ly~~---~~~~~~~~~~~~l~~~~~~~l~~L~~~~P~~L~g~pS~l~ 199 (430)
T TIGR02304 138 DGLFAKHRIAFFLRADNNLYQS---VNNRWISLDFFDLLAPFQAHIKRLNQRKPSIIVAPPSVLR 199 (430)
T ss_pred cccccCCcEEEEEccChhHHHH---HHhccceeeecCCCcCHHHHHHHHHHhCCCEEEEcHHHHH
Confidence 3888999999995433222221 2222221333444466788889999999999998876544
No 419
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=26.92 E-value=3.9e+02 Score=22.63 Aligned_cols=21 Identities=14% Similarity=-0.028 Sum_probs=11.7
Q ss_pred eEEeccHHHHHHHHHHHHhCC
Q psy4550 178 GIVCPHRGAVHAYKWRHRAYP 198 (251)
Q Consensus 178 ~v~~s~~~l~~~~~~~~~~~~ 198 (251)
|++.+...++..+.......+
T Consensus 218 G~vv~~~~~~~~~~~~~~~~g 238 (390)
T PRK08133 218 GAVVGSKELMEEVFGFLRTAG 238 (390)
T ss_pred EEEEcCHHHHHHHHHHHHHhC
Confidence 677777766655444343333
No 420
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=26.71 E-value=2.7e+02 Score=20.70 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEe-cCCC--eeeHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEc
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVD-HDGR--SITFKQ--LDEWTDIVGTYLINQGCIVGSTVGVLM 71 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~-~~~~--~~T~~~--l~~~~~~~a~~L~~~g~~~g~~V~l~~ 71 (251)
......+-+....+++|.....+. +.+. +-.|.+ =.+|++.++.+|.+.|+.++ ++.+..
T Consensus 97 ~~~~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~~-~i~~~G 161 (190)
T COG2885 97 KAQATLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGVVAD-RISTVG 161 (190)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCCCcc-cEEEEE
Confidence 455667777778889987666653 1111 123332 24688899999999998877 665543
No 421
>PLN02479 acetate-CoA ligase
Probab=26.68 E-value=4.6e+02 Score=23.31 Aligned_cols=83 Identities=6% Similarity=-0.089 Sum_probs=48.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|++.+...+.... ...+++++++.....+-. .......+.+...++..+.+ +..++..+...+++.++++++.
T Consensus 214 ~~sh~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~t~~~~ 289 (567)
T PLN02479 214 VLHHRGAYLMALSNA---LIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICL-RQVTAKAIYSAIANYGVTHFCA 289 (567)
T ss_pred EeccHHHHHHHHHHH---hhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEec-cCCCHHHHHHHHHHcCCeEEEe
Confidence 478877654443222 234677888765554421 11112223233334434434 4578999999999999999998
Q ss_pred ccchhhhh
Q psy4550 118 KGEYMDRL 125 (251)
Q Consensus 118 ~~~~~~~~ 125 (251)
.+.....+
T Consensus 290 ~P~~~~~l 297 (567)
T PLN02479 290 APVVLNTI 297 (567)
T ss_pred cHHHHHHH
Confidence 77766544
No 422
>PRK05409 hypothetical protein; Provisional
Probab=26.64 E-value=2.6e+02 Score=22.65 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhc
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~ 59 (251)
....+++++....++.+.++.++.+++..-.+.++.+.+.++...+++.
T Consensus 224 V~~~Vw~L~~~~l~~~g~~ptLlE~D~~iP~~~~l~~E~~~ar~~~~~~ 272 (281)
T PRK05409 224 VIDPVWDLYEYAIARHGPVPTLLERDFNIPPFAELLAELDKARAILARA 272 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 3457899999999888778888888887778999999999998877775
No 423
>PRK06450 threonine synthase; Validated
Probab=26.63 E-value=3.3e+02 Score=22.63 Aligned_cols=78 Identities=10% Similarity=-0.026 Sum_probs=46.8
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+-||++ +.+..+...+++.|. +.| +.....=--..+...+..+|..+..+-|...+..-...++..+++++.++
T Consensus 77 TGSfKD--Rga~~~i~~a~~~g~---~~v-v~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~ 150 (338)
T PRK06450 77 TGSYKD--RGSVTLISYLAEKGI---KQI-SEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVR 150 (338)
T ss_pred cCCCHH--HHHHHHHHHHHHcCC---CEE-EEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Confidence 345544 334444445555553 233 33333334455666677778766555555566667777889999999997
Q ss_pred cchh
Q psy4550 119 GEYM 122 (251)
Q Consensus 119 ~~~~ 122 (251)
....
T Consensus 151 ~~~~ 154 (338)
T PRK06450 151 GSRE 154 (338)
T ss_pred CCHH
Confidence 6654
No 424
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=26.58 E-value=4.1e+02 Score=22.77 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=39.6
Q ss_pred CCCCCCEEEEEccCCHHHH----HHHH--HHHHHCCeE---eeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 60 GCIVGSTVGVLMERCLEWT----ISYI--AIHKAGGGY---LPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~~----~~~~--a~~~~G~~~---v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+++||.|.+.++..+..- ..++ .+.+.|+.+ .-.+-..+.+++..+++..+|+.+|-
T Consensus 315 ~l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ip 381 (422)
T TIGR00649 315 RIRKGDTVVFSAPPIPGNENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLRLLKPKYIIP 381 (422)
T ss_pred EeCCCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHHHhCCCEEEe
Confidence 4568999988885444222 2222 255677744 23455678999999999999998874
No 425
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=26.55 E-value=3e+02 Score=21.19 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~ 91 (251)
.-+.++.....+..++.+.+.|..| ..+-.++.+.+..+-..+.. -.+.+.++|...+ +...++++.+|+..
T Consensus 137 ~~~~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~lv~~~~~~~~~------~~l~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 137 EELLELAEALAEAGADIIYLADTVG-IMTPEDVAELVRALREALPD------IPLGFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp HHHHHHHHHHHHHT-SEEEEEETTS--S-HHHHHHHHHHHHHHSTT------SEEEEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHHHcCCeEEEeeCccC-CcCHHHHHHHHHHHHHhccC------CeEEEEecCCccchhHHHHHHHHcCCCE
Confidence 3556666666667788888887666 46766666665544333322 5788999887665 66788889999876
Q ss_pred e
Q psy4550 92 L 92 (251)
Q Consensus 92 v 92 (251)
+
T Consensus 210 i 210 (237)
T PF00682_consen 210 I 210 (237)
T ss_dssp E
T ss_pred E
Confidence 5
No 426
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=26.43 E-value=26 Score=21.47 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=34.6
Q ss_pred chhhhHHHHHHHHHHhCC-----CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 10 DAEGALHYMFRNQAKRTP-----DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~-----~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
+...|+.+++.....++| +..++. .+++.+.. +- .+.-++.||.|+++-+
T Consensus 19 ~~~~tv~~ll~~l~~~~p~~~~~~~~~v~-vN~~~v~~-~~-----------~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 19 PEGSTVRDLLEALAERYPELALRDRVAVA-VNGEIVPD-DG-----------LDTPLKDGDEVAILPP 73 (77)
T ss_dssp SSTSBHHHHHHHHCHHTGGGHTTTTEEEE-ETTEEEGG-GT-----------TTSBEETTEEEEEEES
T ss_pred CCCCcHHHHHHHHHhhccccccCccEEEE-ECCEEcCC-cc-----------CCcCcCCCCEEEEECC
Confidence 456689999999999997 666664 57765554 31 1234678888888765
No 427
>KOG0023|consensus
Probab=26.33 E-value=3.5e+02 Score=22.59 Aligned_cols=62 Identities=19% Similarity=0.113 Sum_probs=46.7
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
|.+.|+.||+.|+|..--..-.+...+|-. .|..++.++... ..-+..++..++...+...+
T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKA-MG~rV~vis~~~--~kkeea~~~LGAd~fv~~~~ 235 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKA-MGMRVTVISTSS--KKKEEAIKSLGADVFVDSTE 235 (360)
T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHH-hCcEEEEEeCCc--hhHHHHHHhcCcceeEEecC
Confidence 778899999999999999988888888764 567777776543 23445677778887776543
No 428
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=26.32 E-value=67 Score=19.68 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=13.8
Q ss_pred HHHHhcCCCCCCEEEEEcc
Q psy4550 54 TYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 54 ~~L~~~g~~~g~~V~l~~~ 72 (251)
..+++.|+++||.|.=...
T Consensus 34 ~~Irr~~LR~GD~V~G~vr 52 (68)
T cd04459 34 SQIRRFNLRTGDTVVGQIR 52 (68)
T ss_pred HHHHHhCCCCCCEEEEEEe
Confidence 3456779999998865443
No 429
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=26.30 E-value=3.6e+02 Score=22.06 Aligned_cols=79 Identities=8% Similarity=-0.056 Sum_probs=49.3
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH----HHHC--CeEeeCCCCCCHHHHHHHHhhcC---
Q psy4550 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI----HKAG--GGYLPLETSYPPALLESVLDDAK--- 111 (251)
Q Consensus 41 T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~----~~~G--~~~v~i~~~~~~~~l~~~l~~~~--- 111 (251)
.+.+....+..+...|++.| -.+++++.|..+.+...+.- .... ...+-.+..-.++.+.++++..+
T Consensus 28 ~~~~~~~~~~e~L~~L~~~G----i~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~ 103 (320)
T TIGR01686 28 NLSPLHKTLQEKIKTLKKQG----FLLALASKNDEDDAKKVFERRKDFILQAEDFDARSINWGPKSESLRKIAKKLNLGT 103 (320)
T ss_pred ccCccHHHHHHHHHHHHhCC----CEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEecCchHHHHHHHHHHhCCCc
Confidence 44456677777777777764 56999999998877665543 1111 12222344445677777777664
Q ss_pred ccEEEEccchhh
Q psy4550 112 PSIVITKGEYMD 123 (251)
Q Consensus 112 ~~~vi~~~~~~~ 123 (251)
-.+|+.++...+
T Consensus 104 ~~~vfidD~~~d 115 (320)
T TIGR01686 104 DSFLFIDDNPAE 115 (320)
T ss_pred CcEEEECCCHHH
Confidence 467777776544
No 430
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=26.29 E-value=3.7e+02 Score=22.15 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=35.5
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC----CCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET----SYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~----~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|++-.|.-. ....++...|+.+++++- ..+.+.+...+...++++|+..
T Consensus 102 ~~~gd~vlv~~P~y~---~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~ 160 (356)
T PRK04870 102 AKPGATVLAPEPGFV---MYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLA 160 (356)
T ss_pred cCCCCEEEECCCCHH---HHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEc
Confidence 367888887766433 334456677877666643 3456778887766677777654
No 431
>PRK08329 threonine synthase; Validated
Probab=26.23 E-value=3.4e+02 Score=22.64 Aligned_cols=76 Identities=13% Similarity=-0.000 Sum_probs=45.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+=||++ +.+......+.+.|. +.|.... .+=--..+.+++..+|..+..+-|...+..-...++..++++++++
T Consensus 84 tGSfKd--Rga~~~i~~a~~~g~---~~vv~aS-sGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~ 157 (347)
T PRK08329 84 TGSFKD--RGTYVTVAKLKEEGI---NEVVIDS-SGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVE 157 (347)
T ss_pred CcCCHH--HHHHHHHHHHHHcCC---CEEEEEC-CCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEEC
Confidence 344444 333344444556664 3444433 3333344455666788766666565666777788899999999997
Q ss_pred cc
Q psy4550 119 GE 120 (251)
Q Consensus 119 ~~ 120 (251)
.+
T Consensus 158 ~~ 159 (347)
T PRK08329 158 GD 159 (347)
T ss_pred CC
Confidence 55
No 432
>PRK06437 hypothetical protein; Provisional
Probab=26.18 E-value=1.1e+02 Score=18.49 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=31.3
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
++...|+.+++.+.. -.++.+++. .+++-+. .+.-+++||+|.++-.
T Consensus 17 i~~~~tv~dLL~~Lg-i~~~~vaV~-vNg~iv~---------------~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 17 IDHELTVNDIIKDLG-LDEEEYVVI-VNGSPVL---------------EDHNVKKEDDVLILEV 63 (67)
T ss_pred cCCCCcHHHHHHHcC-CCCccEEEE-ECCEECC---------------CceEcCCCCEEEEEec
Confidence 344467888887753 356777775 6776664 3446788999988754
No 433
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=26.18 E-value=2e+02 Score=23.80 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhCCCceEEEecCCC-eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH----HHHHHHHHHHHHC
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHDGR-SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL----EWTISYIAIHKAG 88 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~~~-~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~----~~~~~~~a~~~~G 88 (251)
.+...+.+..+++++...+.-.+.. .-...-+...+..+-..|-.-|+..|..|-++.+.+. ..+.++..+...|
T Consensus 2 ~l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g 81 (322)
T PF00154_consen 2 ALEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQG 81 (322)
T ss_dssp HHHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhccc
Confidence 4566777778888877666421111 1111122333333334444468999999999999762 2334444566789
Q ss_pred CeEeeCCCCCC--HHHHHHHHhhcCccEEEEccch
Q psy4550 89 GGYLPLETSYP--PALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 89 ~~~v~i~~~~~--~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
..++.+++..+ ++.+..+ ..---+++++.++.
T Consensus 82 ~~~a~ID~e~~ld~~~a~~l-Gvdl~rllv~~P~~ 115 (322)
T PF00154_consen 82 GICAFIDAEHALDPEYAESL-GVDLDRLLVVQPDT 115 (322)
T ss_dssp -EEEEEESSS---HHHHHHT-T--GGGEEEEE-SS
T ss_pred ceeEEecCcccchhhHHHhc-CccccceEEecCCc
Confidence 99999988544 2222222 21122566665544
No 434
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.10 E-value=3.7e+02 Score=22.00 Aligned_cols=77 Identities=10% Similarity=-0.057 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHH---HHHHHHHHCCeE--eeCCCCCCHHHHHHHHhhc----Ccc
Q psy4550 44 QLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTI---SYIAIHKAGGGY--LPLETSYPPALLESVLDDA----KPS 113 (251)
Q Consensus 44 ~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~---~~~a~~~~G~~~--v~i~~~~~~~~l~~~l~~~----~~~ 113 (251)
++.+...+-...|++. |.+|+=.+.+..++...... -.=+|...|..+ .-++...+.+++...++.. +.+
T Consensus 12 ~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~ 91 (293)
T PRK14185 12 QIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVD 91 (293)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3444444444456655 88886555555544433332 345888899877 4466777788888766655 455
Q ss_pred EEEEccc
Q psy4550 114 IVITKGE 120 (251)
Q Consensus 114 ~vi~~~~ 120 (251)
-|+..-.
T Consensus 92 GIlvqlP 98 (293)
T PRK14185 92 GFIVQLP 98 (293)
T ss_pred eEEEecC
Confidence 6666544
No 435
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=25.91 E-value=96 Score=19.73 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=24.9
Q ss_pred eeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHH
Q psy4550 39 SITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLE 76 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~ 76 (251)
--|-.+=.+.-+.++..|.+ .|+.+.|...++..|+.+
T Consensus 39 gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~e 77 (82)
T PF14552_consen 39 GRSTEQKKALYRALAERLAEKLGIRPEDVMIVLVENPRE 77 (82)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GG
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEECCcc
Confidence 34667777777888899977 699999999888887643
No 436
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=25.91 E-value=2.3e+02 Score=23.25 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=49.4
Q ss_pred ceEEEe-cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC-CHHHHHHH
Q psy4550 29 KIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY-PPALLESV 106 (251)
Q Consensus 29 ~~a~~~-~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~l~~~ 106 (251)
++.+.+ ..+.+-|+++-- +..+...+.+.| ....+....+-.-..+.+++...|..++.+-|.. .+..-...
T Consensus 40 ~i~~K~E~~nptGSfKdR~--a~~~l~~a~~~g----~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~ 113 (328)
T TIGR00260 40 NLYVLELFHNPTLSFKDRG--MAVALTKALELG----NDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQ 113 (328)
T ss_pred cEEehhhccCCchhhHhhh--HHHHHHHHHHcC----CCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHH
Confidence 566653 223345555544 333333334444 2233334333333444477888898777776765 44566666
Q ss_pred HhhcCccEEEEccch
Q psy4550 107 LDDAKPSIVITKGEY 121 (251)
Q Consensus 107 l~~~~~~~vi~~~~~ 121 (251)
++..++++++++..+
T Consensus 114 ~~~~GA~Vi~~~~~~ 128 (328)
T TIGR00260 114 ALGYNAEVVAIDGNF 128 (328)
T ss_pred HHhcCcEEEEecCCH
Confidence 778999999998643
No 437
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=25.83 E-value=5e+02 Score=23.44 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=57.6
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~ 95 (251)
.++.++++- ..| -.+|++.+...+..+...+...+ ..++++...+|-. ......++.++..|+.++..+
T Consensus 207 ~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~ 285 (614)
T PRK08180 207 GPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLA-EEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDD 285 (614)
T ss_pred CcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccC-CCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeC
Confidence 356666653 222 35899988877665544432211 1456766666532 223445666778888877654
Q ss_pred CCCCH---HHHHHHHhhcCccEEEEccchhh
Q psy4550 96 TSYPP---ALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 96 ~~~~~---~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
...++ .++...++..++++++.-+....
T Consensus 286 ~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~ 316 (614)
T PRK08180 286 GKPTPGGFDETLRNLREISPTVYFNVPKGWE 316 (614)
T ss_pred CCccchhHHHHHHHHHHhCCcEEechHHHHH
Confidence 33333 35666778889998887665443
No 438
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=25.81 E-value=3.5e+02 Score=21.73 Aligned_cols=12 Identities=8% Similarity=0.183 Sum_probs=8.5
Q ss_pred CCCEEEEEccCC
Q psy4550 63 VGSTVGVLMERC 74 (251)
Q Consensus 63 ~g~~V~l~~~~~ 74 (251)
.+..++++.+++
T Consensus 193 ~~~vi~~vGptG 204 (282)
T TIGR03499 193 QGGVIALVGPTG 204 (282)
T ss_pred CCeEEEEECCCC
Confidence 456777777766
No 439
>PRK08198 threonine dehydratase; Provisional
Probab=25.76 E-value=4.2e+02 Score=22.57 Aligned_cols=52 Identities=10% Similarity=-0.117 Sum_probs=39.6
Q ss_pred ccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 71 ~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
...+---..+.++|...|..++.+-|...+..-...++..+++++++...+.
T Consensus 76 aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~~~~ 127 (404)
T PRK08198 76 ASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDVYD 127 (404)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHH
Confidence 3444455666788999998887777777777777788999999999976543
No 440
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=25.56 E-value=2.9e+02 Score=20.65 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=36.8
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEec----------CCCeeeHHHHHHHHHHHHHHHHhcCCCC
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDH----------DGRSITFKQLDEWTDIVGTYLINQGCIV 63 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~----------~~~~~T~~~l~~~~~~~a~~L~~~g~~~ 63 (251)
.-...+..++....+++|+.|.+.-. ....-++.++.+..++....|++.|.+.
T Consensus 75 ~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~n 138 (178)
T PF14606_consen 75 EFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKN 138 (178)
T ss_dssp THHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TT
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 33456788888889999999887521 1134688999999999999998887554
No 441
>PRK06178 acyl-CoA synthetase; Validated
Probab=25.56 E-value=4.7e+02 Score=23.13 Aligned_cols=79 Identities=5% Similarity=-0.083 Sum_probs=51.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|++.+...+....... ..++++|++....+-..- ....+++.+..|+..+..+ ...++.+...++..++..+.
T Consensus 228 ~~t~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~-~~~~~~~~~~i~~~~~t~~~ 304 (567)
T PRK06178 228 EHTQRDMVYTAAAAYAVA--VVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA-RWDAVAFMAAVERYRVTRTV 304 (567)
T ss_pred EeccHHHHHHHHHHHHHh--ccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC-CCCHHHHHHHHHHhCCeEEe
Confidence 478887765544433222 456778887766663221 1234566677888877664 56788999999999998887
Q ss_pred Eccc
Q psy4550 117 TKGE 120 (251)
Q Consensus 117 ~~~~ 120 (251)
....
T Consensus 305 ~~~~ 308 (567)
T PRK06178 305 MLVD 308 (567)
T ss_pred ccHH
Confidence 6543
No 442
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=25.48 E-value=4.1e+02 Score=22.34 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=25.2
Q ss_pred CCCCCEEEEEccCCHHHHHHH-HHHHHHCCeEeeC--CCC--CCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISY-IAIHKAGGGYLPL--ETS--YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~-~a~~~~G~~~v~i--~~~--~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++||.|.+..+...-.+..+ ..+...|+.++.+ ++. ...+++...++. +.++|+.
T Consensus 103 ~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~-~t~lv~i 163 (398)
T TIGR03392 103 LQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP-RTRILAL 163 (398)
T ss_pred CCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc-CceEEEE
Confidence 456776665544433322222 2234456544443 322 245566655532 3444443
No 443
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=25.45 E-value=3.5e+02 Score=21.51 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEe
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYL 92 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v 92 (251)
-+.++..+..+.-++.+.+.|..| ..+-.++.+.+..+.+.+... .-.+.+.++|...+ +...++++.+|+..+
T Consensus 144 ~~~~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~~lv~~l~~~~~~~----~i~l~~H~Hn~~GlA~An~laAi~aG~~~i 218 (268)
T cd07940 144 FLIEVVEAAIEAGATTINIPDTVG-YLTPEEFGELIKKLKENVPNI----KVPISVHCHNDLGLAVANSLAAVEAGARQV 218 (268)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCC-CCCHHHHHHHHHHHHHhCCCC----ceeEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 445555555555677777776555 477777777776665433110 24688888888665 567788888886544
Q ss_pred eC--C------CCCCHHHHHHHHhhcC
Q psy4550 93 PL--E------TSYPPALLESVLDDAK 111 (251)
Q Consensus 93 ~i--~------~~~~~~~l~~~l~~~~ 111 (251)
=. . -..+-+++...++..+
T Consensus 219 D~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 219 ECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred EEEeeccccccccccHHHHHHHHHhcc
Confidence 22 1 1234566666665443
No 444
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=25.43 E-value=14 Score=18.48 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=7.9
Q ss_pred ccCC-CCCCceEE
Q psy4550 169 SSGT-TGKPKGIV 180 (251)
Q Consensus 169 TSGt-TG~pK~v~ 180 (251)
|||| +|.|-.|.
T Consensus 11 tSGSGSG~p~Lvq 23 (30)
T smart00467 11 TSGSGSGLPLLVQ 23 (30)
T ss_pred cCCCCCCchhHHH
Confidence 7887 57775543
No 445
>KOG1529|consensus
Probab=25.23 E-value=77 Score=25.54 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=44.7
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~ 95 (251)
+...++......+-..+.+.|+..++.|.+-|.-.+..-+..+|+.++| +.+.+.
T Consensus 212 ~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lY 266 (286)
T KOG1529|consen 212 LDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLY 266 (286)
T ss_pred cccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCccee
Confidence 4455555556677778888999999999999999999999999999999 555554
No 446
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=25.23 E-value=5.1e+02 Score=23.41 Aligned_cols=71 Identities=13% Similarity=-0.103 Sum_probs=44.4
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCCC-C--CHHHHHHHHhhcCc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLETS-Y--PPALLESVLDDAKP 112 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~~-~--~~~~l~~~l~~~~~ 112 (251)
.+|++.+...+..+. ...++.++|++...+|-.- --+...+.++..|+..+.+.+. . .+..+...++..+.
T Consensus 199 ~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 273 (631)
T PRK07769 199 QITHLNLPTNVLQVI---DALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPG 273 (631)
T ss_pred EEcHHHHHHHHHHHH---HHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhcc
Confidence 489988877665543 3346788999888887442 2222334445678877766552 2 56666677766654
No 447
>PRK06110 hypothetical protein; Provisional
Probab=25.20 E-value=3.9e+02 Score=21.96 Aligned_cols=54 Identities=6% Similarity=-0.050 Sum_probs=38.5
Q ss_pred EEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 68 ~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
.+....+-.-..+.++|...|..+..+-|...+..-...++..+++++.+...+
T Consensus 73 vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~ 126 (322)
T PRK06110 73 VISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGEDF 126 (322)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 344445555677788889999866666555555556688999999999997554
No 448
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.18 E-value=2.3e+02 Score=19.32 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 79 ~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
.........|.-++-+-+..+.+++.....+.++++|+.+..
T Consensus 18 ~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~ 59 (122)
T cd02071 18 VIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSL 59 (122)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccc
Confidence 334445566788888888889999999999999988887643
No 449
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=25.13 E-value=3.9e+02 Score=22.04 Aligned_cols=14 Identities=0% Similarity=-0.187 Sum_probs=8.3
Q ss_pred CchHHHhhhhcccc
Q psy4550 235 DPPRLTSGWVRLPL 248 (251)
Q Consensus 235 ~~~~~~~~i~~~~v 248 (251)
+...+.+.+++.++
T Consensus 310 ~~~~v~~~L~~~gi 323 (363)
T TIGR02326 310 RFADFYQRLKEQGF 323 (363)
T ss_pred CHHHHHHHHHHCCE
Confidence 34567777766553
No 450
>PRK12342 hypothetical protein; Provisional
Probab=25.11 E-value=3.5e+02 Score=21.51 Aligned_cols=85 Identities=9% Similarity=0.044 Sum_probs=55.7
Q ss_pred cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCC-eEeeC--------CCCCCHHHHH
Q psy4550 35 HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGG-GYLPL--------ETSYPPALLE 104 (251)
Q Consensus 35 ~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~-~~v~i--------~~~~~~~~l~ 104 (251)
.++-.+--..+...+-..|-.|+++| |+.+++.+.+.. +-..+.--++..|+ -.+.+ ++..+...|.
T Consensus 26 r~~~~~~iNp~D~~AlE~AlrLk~~g---~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La 102 (254)
T PRK12342 26 FDNAEAKISQFDLNAIEAASQLATDG---DEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALA 102 (254)
T ss_pred cCCCCccCChhhHHHHHHHHHHhhcC---CEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHH
Confidence 34555667788888999999998654 677777776643 33334344666675 22222 2233467788
Q ss_pred HHHhhcCccEEEEccchh
Q psy4550 105 SVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 105 ~~l~~~~~~~vi~~~~~~ 122 (251)
..++..++++||+.....
T Consensus 103 ~~i~~~~~DLVl~G~~s~ 120 (254)
T PRK12342 103 AAIEKIGFDLLLFGEGSG 120 (254)
T ss_pred HHHHHhCCCEEEEcCCcc
Confidence 888888999999976543
No 451
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=25.07 E-value=3.1e+02 Score=20.88 Aligned_cols=53 Identities=13% Similarity=-0.100 Sum_probs=34.6
Q ss_pred cCCCCCCEEEEEccCCHHH--HHH--HHHHHHHCCeEeeCCCCCCHHHHHHHHhhcC
Q psy4550 59 QGCIVGSTVGVLMERCLEW--TIS--YIAIHKAGGGYLPLETSYPPALLESVLDDAK 111 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~~~~--~~~--~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~ 111 (251)
-|+.+|+.+++..+++.-- +.. ..++...|-.++.++...+.+++....+..+
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFG 71 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhC
Confidence 4899999999999987432 222 2234455766677777777777665554443
No 452
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=25.03 E-value=2.5e+02 Score=19.78 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 77 WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 77 ~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
.......+...|.-++-+-...+++++.....+.++++|..+.-
T Consensus 20 ~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~ 63 (137)
T PRK02261 20 NKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSL 63 (137)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCc
Confidence 34455666678999999999999999999999999999998653
No 453
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=24.93 E-value=2.5e+02 Score=19.79 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=29.3
Q ss_pred CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH---HHHHHHHHHHCCeEeeC
Q psy4550 36 DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW---TISYIAIHKAGGGYLPL 94 (251)
Q Consensus 36 ~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~---~~~~~a~~~~G~~~v~i 94 (251)
+++.++..+|.+...+.. .. .+...|.|..+....+ +-.+=.|..+|..-+.+
T Consensus 77 ~~~~v~~~~L~~~L~~~~---~~---~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l 132 (141)
T PRK11267 77 GNDPVTDETMITALDALT---EG---KKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGL 132 (141)
T ss_pred CCccccHHHHHHHHHHHH---hc---CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 345567766665544422 11 2455677777766433 44566666777654433
No 454
>COG4006 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.69 E-value=3.5e+02 Score=21.34 Aligned_cols=50 Identities=16% Similarity=-0.059 Sum_probs=36.6
Q ss_pred eHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEccCC--HHHHHHHHHHHHHCCe
Q psy4550 41 TFKQLDEWTDIVGTYLINQG---CIVGSTVGVLMERC--LEWTISYIAIHKAGGG 90 (251)
Q Consensus 41 T~~~l~~~~~~~a~~L~~~g---~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~ 90 (251)
..++|+.....+.+.+...+ ..+|..|-|..-.+ ++..++.+|...+|+.
T Consensus 125 ~~g~fyeGLsdL~~~v~~di~~~~~~gn~vyinaTgGfKPES~fltLagsLaGa~ 179 (278)
T COG4006 125 VFGRFYEGLSDLVREVYCDIKVRIGRGNVVYINATGGFKPESGFLTLAGSLAGAS 179 (278)
T ss_pred chhHHHHHHHHHHHHHHHHhheeccCCceEEEecCCCCCchHHHHHHHHHHcCCc
Confidence 45667776666666665543 34677777777655 8999999999999987
No 455
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=24.63 E-value=2.1e+02 Score=22.13 Aligned_cols=36 Identities=14% Similarity=-0.109 Sum_probs=24.5
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~ 75 (251)
=||.++.+|+...-..+......+++.|+|+++..+
T Consensus 150 Es~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~v 185 (228)
T PRK14116 150 ENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNS 185 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHH
Confidence 478999999988665543222235678888888553
No 456
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=24.58 E-value=4.1e+02 Score=22.11 Aligned_cols=85 Identities=13% Similarity=-0.008 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC---------CCHHHHHHHHhhcCc
Q psy4550 42 FKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS---------YPPALLESVLDDAKP 112 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~---------~~~~~l~~~l~~~~~ 112 (251)
-.++......++..|.+.. | |.|. +..+..+.+++.+|+...++.++-+... ...+...+++....-
T Consensus 49 ~~~~~~~~~~~~~~~~~~~--P-d~Vl-v~GD~~~~la~alaA~~~~ipv~HieaGlRs~d~~~g~~de~~R~~i~~la~ 124 (346)
T PF02350_consen 49 AKSTGLAIIELADVLEREK--P-DAVL-VLGDRNEALAAALAAFYLNIPVAHIEAGLRSGDRTEGMPDEINRHAIDKLAH 124 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHT----SEEE-EETTSHHHHHHHHHHHHTT-EEEEES-----S-TTSSTTHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHhcC--C-CEEE-EEcCCchHHHHHHHHHHhCCCEEEecCCCCccccCCCCchhhhhhhhhhhhh
Confidence 3566666777777777763 3 6554 5556889999999999999999988665 455666666655544
Q ss_pred cEEEEccchhhhhhccCC
Q psy4550 113 SIVITKGEYMDRLERTSV 130 (251)
Q Consensus 113 ~~vi~~~~~~~~~~~~~~ 130 (251)
=.+..++...+++.+.+.
T Consensus 125 lhf~~t~~~~~~L~~~G~ 142 (346)
T PF02350_consen 125 LHFAPTEEARERLLQEGE 142 (346)
T ss_dssp EEEESSHHHHHHHHHTT-
T ss_pred hhccCCHHHHHHHHhcCC
Confidence 334444555566655433
No 457
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=24.58 E-value=3.2e+02 Score=23.37 Aligned_cols=55 Identities=11% Similarity=-0.103 Sum_probs=39.6
Q ss_pred EEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 68 ~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
.+....+=--..+.++|...|..+..+-|...+..-...++..++++++++..+.
T Consensus 116 vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~~~ 170 (396)
T TIGR03528 116 FVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLNYD 170 (396)
T ss_pred EEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCCHH
Confidence 3444444455667788888998777766666666677777999999999986543
No 458
>PRK06608 threonine dehydratase; Provisional
Probab=24.55 E-value=4.1e+02 Score=22.07 Aligned_cols=64 Identities=11% Similarity=-0.081 Sum_probs=42.4
Q ss_pred HHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 54 TYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 54 ~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
..+.+.|..+ +.| +....+---..+.++|...|..++.+-|...+++-...++..++++++++.
T Consensus 63 ~~a~~~g~~~-~~v-v~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~ 126 (338)
T PRK06608 63 LELKEQGKLP-DKI-VAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT 126 (338)
T ss_pred HHhhhhcCcC-CeE-EEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC
Confidence 3445555422 233 233344444555678888998777777766677788889999999999964
No 459
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=24.32 E-value=1.6e+02 Score=21.11 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=22.7
Q ss_pred ecCCCeeeHHHHHHHHHHHHHHHHhc
Q psy4550 34 DHDGRSITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 34 ~~~~~~~T~~~l~~~~~~~a~~L~~~ 59 (251)
..+|+++||.|+.++++.....++..
T Consensus 43 ~VnGe~Is~~ef~~~v~~~~~~~k~~ 68 (145)
T PF13623_consen 43 EVNGEKISYQEFQQRVEQATENYKQQ 68 (145)
T ss_pred eECCEEcCHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999888764
No 460
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.31 E-value=4.6e+02 Score=22.58 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC-CCCCHHHHHHHHhh------cCccEEEEc
Q psy4550 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLE-TSYPPALLESVLDD------AKPSIVITK 118 (251)
Q Consensus 64 g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~-~~~~~~~l~~~l~~------~~~~~vi~~ 118 (251)
|.+|+|+.+...-+-.+-+-.-..|..++.+. ...+++.....++. ..+.+++.+
T Consensus 293 ~k~vai~~~~~~~~~l~~~L~~elGm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 354 (427)
T cd01971 293 PRRFAVIADSTYALGLARFLVNELGWVPAKQVITDNPPEKYRSAIENEFEAEGVSAEVVFSE 354 (427)
T ss_pred CceEEEECChHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHhcCCCCcEEEec
Confidence 67899998765444444444446898776552 33334444443332 345555554
No 461
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=24.29 E-value=1.6e+02 Score=17.94 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEccCC
Q psy4550 46 DEWTDIVGTYLINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 46 ~~~~~~~a~~L~~~g~~~g~~V~l~~~~~ 74 (251)
.+++.+--..|+..|++| |-|..|+.
T Consensus 2 ~~RV~khR~~lRa~GLRP---VqiWVPDt 27 (65)
T PF11455_consen 2 RERVRKHRERLRAAGLRP---VQIWVPDT 27 (65)
T ss_pred hHHHHHHHHHHHHcCCCc---ceeeCCCC
Confidence 367788888899999998 88888854
No 462
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=24.24 E-value=1.5e+02 Score=20.78 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=23.9
Q ss_pred ecCCCeeeHHHHHHHHHHHHHHHHhcCCC
Q psy4550 34 DHDGRSITFKQLDEWTDIVGTYLINQGCI 62 (251)
Q Consensus 34 ~~~~~~~T~~~l~~~~~~~a~~L~~~g~~ 62 (251)
|.+.+.-|-....+...+++..|.+.|..
T Consensus 76 D~D~~~~Tn~~V~~a~~~l~~~L~~~G~~ 104 (130)
T PF12965_consen 76 DADTKPKTNKNVRRAIKRLGKLLKEAGCK 104 (130)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHCCCE
Confidence 45555788999999999999999998743
No 463
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=24.01 E-value=4e+02 Score=21.68 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe-EeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG-YLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~-~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+...++++|++|+|.....+-..+. ..+...|+. ++.++. +++.+ .+++..+++.++..
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~-~~ak~~G~~~vi~~~~--~~~~~-~~~~~~ga~~~i~~ 215 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGAL-MLARALGAEDVIGVDP--SPERL-ELAKALGADFVINS 215 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHH-HHHHHcCCCEEEEECC--CHHHH-HHHHHhCCCEEEcC
Confidence 4556889999999996544444444 444567776 554533 33443 34466777777653
No 464
>PRK07334 threonine dehydratase; Provisional
Probab=23.87 E-value=4.6e+02 Score=22.38 Aligned_cols=53 Identities=8% Similarity=-0.020 Sum_probs=39.3
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
+....+---..+.++|...|..+..+-|...++.-...++..++++++++...
T Consensus 75 v~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~ 127 (403)
T PRK07334 75 IAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGETL 127 (403)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECcCH
Confidence 33444555567788899999877777666666666688999999999997554
No 465
>PRK10537 voltage-gated potassium channel; Provisional
Probab=23.74 E-value=1.6e+02 Score=25.18 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=38.9
Q ss_pred HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 55 YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 55 ~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
.|++.|++.-+.|.+..+|..+-....+++...+-. +.+-.....++-...++..+++.++...+.
T Consensus 294 ~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~-~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l 359 (393)
T PRK10537 294 VLKKAGAARARAILALRDNDADNAFVVLAAKEMSSD-VKTVAAVNDSKNLEKIKRVHPDMIFSPQLL 359 (393)
T ss_pred HHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCC-CcEEEEECCHHHHHHHHhcCCCEEECHHHH
Confidence 356667777777777777777777777777766521 011112233344556667777777765543
No 466
>KOG0633|consensus
Probab=23.60 E-value=53 Score=26.28 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCC--HHHHHHHHhhc-CccEEEEccc
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP--PALLESVLDDA-KPSIVITKGE 120 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~--~~~l~~~l~~~-~~~~vi~~~~ 120 (251)
.+...+.+.-.-||.-=.+.+|.+...+....++.-++.+-+|++|.++ .+.+..+++.- .++++|..+.
T Consensus 97 E~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSP 169 (375)
T KOG0633|consen 97 ELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSP 169 (375)
T ss_pred HHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCC
Confidence 3444455555678855557888899999999999999999999999765 57777777654 8899887654
No 467
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=23.55 E-value=1.7e+02 Score=19.54 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=24.2
Q ss_pred HHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550 54 TYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (251)
Q Consensus 54 ~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~ 87 (251)
+-|.+.|+.+|.+|.++..+..+-+.++=-....
T Consensus 59 rTLssyGv~sgSvl~LlideP~~d~~~~~~~~~~ 92 (107)
T cd01795 59 ATLGTLGVIPESVILLKADEPIADYAAMDDVMQV 92 (107)
T ss_pred ccHHhcCCCCCCEEEEEecCCcccHHHHHHHHHh
Confidence 3477889999999999987666555554444443
No 468
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=23.51 E-value=1.9e+02 Score=24.40 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=33.1
Q ss_pred CCCCCEEEEEccCCHHHHHHHH--HHHHHCC--eEeeCCC-----CCCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYI--AIHKAGG--GYLPLET-----SYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~--a~~~~G~--~~v~i~~-----~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+++||.|.+..+.....+.... ++...|+ ..++++. ....+++...+...++++++...
T Consensus 102 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~ 169 (402)
T cd00378 102 LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGA 169 (402)
T ss_pred cCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecC
Confidence 4678888777655322221111 1333454 3444432 33678888888766788777643
No 469
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=23.37 E-value=1.8e+02 Score=17.49 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHh
Q psy4550 44 QLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLD 108 (251)
Q Consensus 44 ~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~ 108 (251)
++.+.+..+.....+.|+..|.. ++++-....++||...|.. -+..++....+
T Consensus 13 ~v~~~A~~i~~~~~~~~~~~Gr~-----~~~iaAA~iY~acr~~~~~-------~t~~eIa~~~~ 65 (71)
T PF00382_consen 13 DVRERAKEIYKKAQERGLLKGRS-----PESIAAACIYLACRLNGVP-------RTLKEIAEAAG 65 (71)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTS------HHHHHHHHHHHHHHHTTSS-------SSHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCcccCC-----HHHHHHHHHHHHHHHcCCC-------cCHHHHHHHhC
Confidence 66777888888888888777764 4555666788888877632 25555555443
No 470
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=23.36 E-value=2e+02 Score=23.34 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCC
Q psy4550 49 TDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGG 89 (251)
Q Consensus 49 ~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~ 89 (251)
...++..|.++|++.++.|.++-.++ ....-++|-....|.
T Consensus 75 ~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh 116 (285)
T COG2897 75 PEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGH 116 (285)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCC
Confidence 36888999999999999999998644 333445555555564
No 471
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=23.36 E-value=4.9e+02 Score=22.53 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=20.0
Q ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC
Q psy4550 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 64 g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~ 96 (251)
|.+|+|......-+-++-+ +..+|..++.+..
T Consensus 311 Gkrvai~~~~~~~~~l~~~-l~elGm~v~~~~~ 342 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATF-FTSMGAQIVAAVT 342 (432)
T ss_pred CCEEEEEcCHHHHHHHHHH-HHHCCCEEEEEEe
Confidence 7888888866543333333 5678887665543
No 472
>PF01035 DNA_binding_1: 6-O-methylguanine DNA methyltransferase, DNA binding domain; InterPro: IPR014048 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase This entry represents the DNA binding region of 6-O-methylguanine-DNA methyltransferases. The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources [].; GO: 0003824 catalytic activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A 2KIM_A 2KIF_A ....
Probab=23.26 E-value=85 Score=20.04 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=16.3
Q ss_pred cCCCeeeHHHHHHHHH------HHHHHHHh
Q psy4550 35 HDGRSITFKQLDEWTD------IVGTYLIN 58 (251)
Q Consensus 35 ~~~~~~T~~~l~~~~~------~~a~~L~~ 58 (251)
.-|+..||+|+.+.+. .++..|..
T Consensus 15 P~G~v~TYg~iA~~~g~p~~ar~Vg~al~~ 44 (85)
T PF01035_consen 15 PYGKVTTYGEIARLLGRPKAARAVGSALAR 44 (85)
T ss_dssp -TT-BEEHHHHHHHTT-TTCHHHHHHHHHT
T ss_pred CCCceEeHHHHHHHHhhcccHHHHHHHhcc
Confidence 4688999999998876 45555544
No 473
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=23.20 E-value=1.2e+02 Score=17.93 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=31.4
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
+...++.+++.... ..++.+++. .+++-++..+.. ..-++.||+|.++-+
T Consensus 12 ~~~~tv~~ll~~l~-~~~~~i~V~-vNg~~v~~~~~~-----------~~~L~~gD~V~ii~~ 61 (65)
T cd00565 12 EEGATLAELLEELG-LDPRGVAVA-LNGEIVPRSEWA-----------STPLQDGDRIEIVTA 61 (65)
T ss_pred CCCCCHHHHHHHcC-CCCCcEEEE-ECCEEcCHHHcC-----------ceecCCCCEEEEEEe
Confidence 34457888887653 445667664 677655544322 233788999988765
No 474
>PRK06815 hypothetical protein; Provisional
Probab=23.11 E-value=4.2e+02 Score=21.67 Aligned_cols=53 Identities=9% Similarity=-0.029 Sum_probs=38.9
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
+....+---..+.++|...|..+..+-|...+..-...++..+++++++..+.
T Consensus 72 v~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~ 124 (317)
T PRK06815 72 ITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDA 124 (317)
T ss_pred EEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 33455555667778888999876666565555667778899999999998754
No 475
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=23.09 E-value=5.5e+02 Score=23.04 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=61.6
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCC--CCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETS--YPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~--~~~~~l~~~l~~~~~~~ 114 (251)
..|.+.+.-.....+...-. +++||++--..+-.-- ....+++-+..|+..+..+.. .+++.+..++++.++++
T Consensus 190 ~H~~gg~l~~~~~~~~~~~~--~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~ 267 (528)
T COG0365 190 VHSHGGYLVEHRLTAKFHGD--LLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTI 267 (528)
T ss_pred EEeCchHHHHHHHHHHHhhC--CCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCce
Confidence 46777777776666554444 4488876555444422 234568999999998866432 25899999999999999
Q ss_pred EEEccchhhhhhcc
Q psy4550 115 VITKGEYMDRLERT 128 (251)
Q Consensus 115 vi~~~~~~~~~~~~ 128 (251)
+.+.+.....+.+.
T Consensus 268 ~~tsPT~~R~l~~~ 281 (528)
T COG0365 268 FGTSPTFLRRLMKL 281 (528)
T ss_pred EeeCHHHHHHHHhc
Confidence 99998776655544
No 476
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=23.06 E-value=4.6e+02 Score=22.06 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=9.4
Q ss_pred CchHHHhhhhcccc
Q psy4550 235 DPPRLTSGWVRLPL 248 (251)
Q Consensus 235 ~~~~~~~~i~~~~v 248 (251)
++.++.+.+.+.+|
T Consensus 337 ~~~~~~~~L~~~gI 350 (401)
T PRK10874 337 HHSDLVTLLAEYGI 350 (401)
T ss_pred CHHHHHHHHHHCCc
Confidence 45677777777665
No 477
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=23.06 E-value=3.1e+02 Score=22.94 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=27.0
Q ss_pred eEeeCCCCCCHHHHHHHHhh-cCccEEEEccchhhhhhccCCCeeeec
Q psy4550 90 GYLPLETSYPPALLESVLDD-AKPSIVITKGEYMDRLERTSVPKVKLE 136 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~-~~~~~vi~~~~~~~~~~~~~~~~~~~~ 136 (251)
++|.+.+. ..+....+++. .++++||.|+.+...........+.++
T Consensus 128 ~~V~V~~d-R~~aa~~l~~~~~~~dviIlDDGfQH~~L~RDleIvl~D 174 (338)
T PRK01906 128 APVWVCPD-RVAAAQALLAAHPGVDVIVSDDGLQHYRLARDVEIVVFD 174 (338)
T ss_pred CeEEEeCc-HHHHHHHHHHhCCCCCEEEECCCCccchhcCCcEEEEEc
Confidence 44555442 22334445543 479999999987766555455555554
No 478
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=23.03 E-value=96 Score=18.36 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=30.7
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
+...++.+++.... -.+..+++. .+++-++..+.. ..-++.||+|.++-+
T Consensus 11 ~~~~tv~~ll~~l~-~~~~~v~v~-vN~~iv~~~~~~-----------~~~L~~gD~veii~~ 60 (64)
T TIGR01683 11 EDGLTLAALLESLG-LDPRRVAVA-VNGEIVPRSEWD-----------DTILKEGDRIEIVTF 60 (64)
T ss_pred CCCCcHHHHHHHcC-CCCCeEEEE-ECCEEcCHHHcC-----------ceecCCCCEEEEEEe
Confidence 34457888887653 345666663 677655543322 224778999988754
No 479
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.01 E-value=3.7e+02 Score=20.98 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEe
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYL 92 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v 92 (251)
-+.+++....+.-++.+.+.|..| ..+-.++.+.+..+...+. .-.+.+.++|...+ +...++++.+|+..+
T Consensus 147 ~l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~li~~l~~~~~------~~~~~~H~Hn~~gla~an~laA~~aG~~~i 219 (265)
T cd03174 147 YVLEVAKALEEAGADEISLKDTVG-LATPEEVAELVKALREALP------DVPLGLHTHNTLGLAVANSLAALEAGADRV 219 (265)
T ss_pred HHHHHHHHHHHcCCCEEEechhcC-CcCHHHHHHHHHHHHHhCC------CCeEEEEeCCCCChHHHHHHHHHHcCCCEE
Confidence 456666666666678888877656 4777777666655543322 25788888888666 667888889997654
Q ss_pred eCC--------CCCCHHHHHHHHhhcC
Q psy4550 93 PLE--------TSYPPALLESVLDDAK 111 (251)
Q Consensus 93 ~i~--------~~~~~~~l~~~l~~~~ 111 (251)
=.. -..+-+++...++..+
T Consensus 220 d~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 220 DGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred EeccccccccccCccHHHHHHHHHhcC
Confidence 221 1234566666666543
No 480
>PRK01112 phosphoglyceromutase; Provisional
Probab=23.01 E-value=2.1e+02 Score=22.15 Aligned_cols=35 Identities=14% Similarity=-0.131 Sum_probs=22.8
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~ 74 (251)
=||.++.+|+..+-..+......+++.|+|+++-.
T Consensus 149 ES~~d~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~ 183 (228)
T PRK01112 149 ESLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGN 183 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCHH
Confidence 47889999887776644322233567788887644
No 481
>KOG0024|consensus
Probab=22.98 E-value=4.5e+02 Score=21.98 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=40.5
Q ss_pred HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 55 YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 55 ~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
..+..|+++|++|+++.- ++--+.+.+.+...|+.=+.+. ...+.+++. .++.+++.+.-...
T Consensus 161 Acr~~~vk~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~-d~~~~Rle~-Ak~~Ga~~~~~~~~ 223 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGA-GPIGLLTGLVAKAMGASDVVIT-DLVANRLEL-AKKFGATVTDPSSH 223 (354)
T ss_pred hhhhcCcccCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEe-ecCHHHHHH-HHHhCCeEEeeccc
Confidence 345569999999988877 4555566667777777544442 234444443 34488888886554
No 482
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=22.91 E-value=2.1e+02 Score=18.16 Aligned_cols=48 Identities=15% Similarity=-0.022 Sum_probs=29.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
.+.+.++......+.. +.. ..+++.|.+++.++.........+...|.
T Consensus 34 ~ip~~~~~~~~~~~~~-~~~--~~~~~~ivv~c~~g~~s~~~~~~l~~~G~ 81 (96)
T cd01529 34 SIPGAALVLRSQELQA-LEA--PGRATRYVLTCDGSLLARFAAQELLALGG 81 (96)
T ss_pred eCCHHHhcCCHHHHHH-hhc--CCCCCCEEEEeCChHHHHHHHHHHHHcCC
Confidence 3566666544444332 222 35678899999887777666666666775
No 483
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=22.87 E-value=2.9e+02 Score=21.69 Aligned_cols=54 Identities=17% Similarity=-0.089 Sum_probs=41.3
Q ss_pred cCCCCCCEEEEEccCCH----HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCc
Q psy4550 59 QGCIVGSTVGVLMERCL----EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKP 112 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~~----~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~ 112 (251)
-|+.+|..++|..++.. ...-.++.....|-.++.+...-+++++.......+.
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGW 75 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCC
Confidence 58999999999999773 3344555556667888888888899998888876654
No 484
>PLN02409 serine--glyoxylate aminotransaminase
Probab=22.68 E-value=4.1e+02 Score=22.51 Aligned_cols=75 Identities=7% Similarity=-0.057 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHH-HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 43 KQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISY-IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 43 ~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~-~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
.++.+...++...+++. |.++++.| ++..++...+... ..++..|-.++..++.........+++..+.+++...
T Consensus 38 ~~~~~~~~~~~~~l~~~~g~~~~~~v-i~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~ 114 (401)
T PLN02409 38 PAFPALTKELLEDVKYIFKTKSGTPF-IFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVE 114 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEE-EEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEE
Confidence 34455555555555554 65544544 4555555544443 3444556555555554545555677777788877764
No 485
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=22.62 E-value=59 Score=22.34 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEeccCCC-CCCceEEeccHHHHH
Q psy4550 165 YIVYSSGTT-GKPKGIVCPHRGAVH 188 (251)
Q Consensus 165 ~i~~TSGtT-G~pK~v~~s~~~l~~ 188 (251)
-..||||.+ ..|-|+|..|..+..
T Consensus 80 ~y~YtSg~~l~Tp~G~M~GhY~M~~ 104 (126)
T COG2967 80 EYQYTSGCPLDTPSGTMQGHYEMID 104 (126)
T ss_pred ceEEcCCcCccCCcceEEEEEEEec
Confidence 357999987 799999999987653
No 486
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=22.60 E-value=3.7e+02 Score=20.79 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 52 VGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 52 ~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+...+.+.| -|.|.+..+.+....-.+-.+...|+ ..+.++|..+.+.+..++...+--++.+
T Consensus 73 ~i~~~~~~g---ad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMt 136 (220)
T PRK08883 73 IIPDFAKAG---ASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMS 136 (220)
T ss_pred HHHHHHHhC---CCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEE
Confidence 334444444 45677777765554445555666663 5666777778888888877666555544
No 487
>PLN02893 Cellulose synthase-like protein
Probab=22.44 E-value=2.2e+02 Score=26.67 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=42.7
Q ss_pred CCCcCchhhhHHHHHHHHHHhCC-CceEEE--ecCCCeeeHHHHHHHHHHHHHHH---HhcCCCCC
Q psy4550 5 NLSDYDAEGALHYMFRNQAKRTP-DKIAVV--DHDGRSITFKQLDEWTDIVGTYL---INQGCIVG 64 (251)
Q Consensus 5 ~~~~~~~~~~l~~~l~~~~~~~~-~~~a~~--~~~~~~~T~~~l~~~~~~~a~~L---~~~g~~~g 64 (251)
+...+|+..++.-+|.-.+-.+| +|.+.. |.+|..+||.-|.+.++-...|+ +++++++.
T Consensus 111 DP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~~WvPFCrk~~ie~R 176 (734)
T PLN02893 111 DPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFATHWLPFCKKNKIVER 176 (734)
T ss_pred CcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHHhhcccccccCCCcC
Confidence 34456666677777777788888 565553 45567899999998877666665 77888764
No 488
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=22.38 E-value=2.4e+02 Score=24.27 Aligned_cols=66 Identities=6% Similarity=0.019 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHH---hCCC-CCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 182 PHRGAVHAYKWRHR---AYPY-DEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 182 s~~~l~~~~~~~~~---~~~~-~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
..+.|...+...+. ..+. ..+++++... -++..+++++..|+.++..+. .+.+.++...+++.++.
T Consensus 21 ~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~--~~~~~~~~~~~~~~~~~ 94 (452)
T PRK07445 21 NSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANP--HWGQQEWQQVLNLVQPD 94 (452)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeecc--CCCHHHHHHHHHhcCCC
Confidence 34556555544443 3344 4577664432 345678899999999999886 47888888888877653
No 489
>PRK06260 threonine synthase; Validated
Probab=22.26 E-value=4.1e+02 Score=22.63 Aligned_cols=87 Identities=13% Similarity=-0.015 Sum_probs=46.1
Q ss_pred ceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC-CHHHHHHH
Q psy4550 29 KIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY-PPALLESV 106 (251)
Q Consensus 29 ~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~l~~~ 106 (251)
++.+.+.. +-+-||++-- +..+.....+.|. +.|. ....+---..+...+...|..++.+-|.. .+..-...
T Consensus 84 ~l~~K~E~~nPTGSfKdRg--a~~~v~~a~~~g~---~~vv-~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~ 157 (397)
T PRK06260 84 ELYVKHEGANPTGSFKDRG--MTVGVTKALELGV---KTVA-CASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQ 157 (397)
T ss_pred cEEEEeCCCCCCcCcHHHH--HHHHHHHHHHcCC---CEEE-EeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHH
Confidence 56666422 2334454432 2222333445553 2333 33333334444556667787666665643 34444446
Q ss_pred HhhcCccEEEEccch
Q psy4550 107 LDDAKPSIVITKGEY 121 (251)
Q Consensus 107 l~~~~~~~vi~~~~~ 121 (251)
++..+++++.++..+
T Consensus 158 ~~~~GA~vi~v~~~~ 172 (397)
T PRK06260 158 ALLHGAKVLEVDGNF 172 (397)
T ss_pred HHhcCCEEEEECCcH
Confidence 778999999997644
No 490
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=22.21 E-value=3.2e+02 Score=20.76 Aligned_cols=54 Identities=11% Similarity=-0.106 Sum_probs=35.7
Q ss_pred cCCCCCCEEEEEccCCHHH--HHHHHH--HHHHCCeEeeCCCCCCHHHHHHHHhhcCc
Q psy4550 59 QGCIVGSTVGVLMERCLEW--TISYIA--IHKAGGGYLPLETSYPPALLESVLDDAKP 112 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~~~~--~~~~~a--~~~~G~~~v~i~~~~~~~~l~~~l~~~~~ 112 (251)
.|+.+|+.+.+..+++.-- +...++ ....|-.++-++...+++++...++..+.
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGW 68 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCC
Confidence 4888899999988877432 222222 33447677777777788887777766553
No 491
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=22.21 E-value=4e+02 Score=21.07 Aligned_cols=75 Identities=15% Similarity=0.013 Sum_probs=41.6
Q ss_pred eeHHHHHHHHHHH---HHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe-EeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 40 ITFKQLDEWTDIV---GTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG-YLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 40 ~T~~~l~~~~~~~---a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~-~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
+++.+........ .+.+++.+..+|++|+|+..-.+-...+.+| ...|+. ++.++ .+++.+ .+.+..+++.+
T Consensus 94 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~--~~~~r~-~~a~~~Ga~~~ 169 (280)
T TIGR03366 94 LPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAAD--PSPDRR-ELALSFGATAL 169 (280)
T ss_pred CCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEC--CCHHHH-HHHHHcCCcEe
Confidence 5665544332222 2234555677999999997654554544444 456764 44443 233333 45566777766
Q ss_pred EEc
Q psy4550 116 ITK 118 (251)
Q Consensus 116 i~~ 118 (251)
+..
T Consensus 170 i~~ 172 (280)
T TIGR03366 170 AEP 172 (280)
T ss_pred cCc
Confidence 643
No 492
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=22.09 E-value=2e+02 Score=20.24 Aligned_cols=35 Identities=14% Similarity=-0.038 Sum_probs=25.4
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~ 74 (251)
-||.++..++.++-..+.+.....++.|+++.+..
T Consensus 116 Es~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~ 150 (155)
T smart00855 116 ESLADVVERLVRALEELIATHDKSGQNVLIVSHGG 150 (155)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCc
Confidence 38999999998887777654334567787777654
No 493
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=21.82 E-value=5.6e+02 Score=22.64 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=49.8
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH---HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE---WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~---~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+|++.+...+......+ .+..+++.+.+...+-.. +...++..+..|+..+..+ ..+...+...++..+++++
T Consensus 225 ~~s~~~l~~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 301 (563)
T PRK06710 225 MLTHKNLVSNTLMGVQWL--YNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP-KFDMKMVFEAIKKHKVTLF 301 (563)
T ss_pred EEehHHHHHHHHHHHhhc--cCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcC-CCCHHHHHHHHHHcCCeEE
Confidence 478888865433222222 244556655444332211 1223345566787777654 4678889999999999999
Q ss_pred EEccchhhh
Q psy4550 116 ITKGEYMDR 124 (251)
Q Consensus 116 i~~~~~~~~ 124 (251)
...+.....
T Consensus 302 ~~~P~~~~~ 310 (563)
T PRK06710 302 PGAPTIYIA 310 (563)
T ss_pred eccHHHHHH
Confidence 887665443
No 494
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=21.80 E-value=2.4e+02 Score=26.05 Aligned_cols=70 Identities=6% Similarity=-0.133 Sum_probs=49.5
Q ss_pred ceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 177 KGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 177 K~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
....+|.+.+...+..++. ..|+.++|++...+ -+....++++..|+..+.... .+.++++...++..++
T Consensus 118 ~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~--~~~~~~l~~il~~s~~ 194 (700)
T PTZ00216 118 ETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYA--NLGEDALAYALRETEC 194 (700)
T ss_pred CceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCC--CCCHHHHHhhhhccCc
Confidence 3567888888776655543 45888999876543 345667888999988877775 3677777777766554
No 495
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=21.69 E-value=5.1e+02 Score=22.08 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=27.5
Q ss_pred CCCCCEEEEEccCCHHHHHHHH-HHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYI-AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~-a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++||.|.+..+.-......+- .+...|+.+..++. ...+.+...++. +.++|+.
T Consensus 100 l~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-~d~e~l~~~i~~-~tklV~i 155 (398)
T PRK08249 100 LKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET-GDHEQIEAEIAK-GCDLLYL 155 (398)
T ss_pred cCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-CCHHHHHHhcCC-CCeEEEE
Confidence 4567776554443222221121 13445666655543 456666666643 4556654
No 496
>PRK11347 antitoxin ChpS; Provisional
Probab=21.52 E-value=2.3e+02 Score=18.07 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcC
Q psy4550 54 TYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAK 111 (251)
Q Consensus 54 ~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~ 111 (251)
..++++|+..||.|-+...+. +.+..|+.+.++ +..++..+.
T Consensus 19 ~il~~l~l~~G~~v~i~v~~~-------------~iii~p~~~~~t---L~eLla~~~ 60 (83)
T PRK11347 19 IVMKELNLQPGQSVEAQVSNN-------------QLILTPISRRYS---LDELLAQCD 60 (83)
T ss_pred HHHHHcCCCCCCEEEEEEECC-------------EEEEEECCCCCC---HHHHHhcCC
Confidence 346778999999999888764 356667766544 444454443
No 497
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=21.45 E-value=2.5e+02 Score=18.51 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=34.9
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCC
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGC 61 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~ 61 (251)
.+....+..+|-+.+.+..-..++.|-++..+ ..++..++..+++.|+
T Consensus 56 ~~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~-----~grv~a~~~~~r~~Gl 103 (103)
T cd00432 56 VEAAYLVGRLLAKRALEKGIKKVVFDRGGYRY-----HGRVKALAKGAREGGL 103 (103)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCccc-----ccHHHHHHHHHHHcCC
Confidence 34456788888888887777677766555433 8889999999988774
No 498
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=21.43 E-value=2.3e+02 Score=22.06 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=31.5
Q ss_pred hCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCC
Q psy4550 25 RTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIV 63 (251)
Q Consensus 25 ~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~ 63 (251)
.+||+..| |-| +...+|.+..+.+..+-..|.+.|+..
T Consensus 91 e~PD~lvf-DLDP~~~~~f~~v~~~A~~vr~~L~~lgL~~ 129 (223)
T cd04866 91 NKPSEIVF-DLDPPSRDHFSLAVEAANLLKEILDALGLTS 129 (223)
T ss_pred CCCCeEEE-ECCCCCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 67888777 644 456899999999999999999998764
No 499
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=21.43 E-value=2.3e+02 Score=22.06 Aligned_cols=36 Identities=17% Similarity=-0.067 Sum_probs=24.5
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~ 75 (251)
=||.++.+|+...-..+...-..+|+.|+|+++..+
T Consensus 137 ES~~~~~~Rv~~~l~~li~~~~~~~~~vliVsHG~v 172 (236)
T PTZ00123 137 ECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNS 172 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCHHH
Confidence 588999999988766543222235778888888553
No 500
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=21.39 E-value=2.3e+02 Score=22.15 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=43.9
Q ss_pred hCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHH
Q psy4550 25 RTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALL 103 (251)
Q Consensus 25 ~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l 103 (251)
.+||+..| |-| +...+|.++.+.+..+-..|.++|+.. .+-.-...+. -+++||.+..+-++.
T Consensus 96 e~PD~lvf-DLDP~~~~~f~~v~~~A~~vr~~L~~lgL~~--f~KTSG~kGl-------------HV~vPl~~~~~~~~~ 159 (227)
T cd04861 96 ERPDRLVF-DLDPGPGVPFEDVVEAALLLRELLDELGLES--FPKTSGGKGL-------------HVYVPLAPRYTWDEV 159 (227)
T ss_pred CCCCEEEE-ECCCCCCCCHHHHHHHHHHHHHHHHHcCCcc--ceEccCCCeE-------------EEEEEcCCCCCHHHH
Confidence 56787777 544 446899999999999999999998764 1111111110 278899988875544
Q ss_pred HHH
Q psy4550 104 ESV 106 (251)
Q Consensus 104 ~~~ 106 (251)
..+
T Consensus 160 r~f 162 (227)
T cd04861 160 RAF 162 (227)
T ss_pred HHH
Confidence 433
Done!