Query psy4550
Match_columns 251
No_of_seqs 147 out of 1167
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 19:56:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r44_A Fatty acyl COA syntheta 100.0 2.9E-39 9.8E-44 278.8 25.0 239 5-249 8-260 (517)
2 1amu_A GRSA, gramicidin synthe 100.0 8.2E-39 2.8E-43 278.4 24.1 234 9-249 35-275 (563)
3 1t5h_X 4-chlorobenzoyl COA lig 100.0 7.4E-39 2.5E-43 275.5 22.3 232 12-249 1-246 (504)
4 3g7s_A Long-chain-fatty-acid-- 100.0 6.9E-39 2.4E-43 278.3 22.1 233 11-249 17-270 (549)
5 3ni2_A 4-coumarate:COA ligase; 100.0 1.1E-38 3.7E-43 276.4 22.3 238 8-250 17-274 (536)
6 4dg8_A PA1221; ANL superfamily 100.0 8.4E-39 2.9E-43 280.9 21.8 231 6-249 20-255 (620)
7 3ivr_A Putative long-chain-fat 100.0 1.4E-38 4.8E-43 274.1 22.4 234 12-250 5-251 (509)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.2E-38 4.1E-43 276.2 21.7 233 12-250 24-275 (539)
9 3fce_A D-alanine--poly(phospho 100.0 9.6E-39 3.3E-43 275.3 20.8 231 14-249 2-237 (512)
10 3o83_A Peptide arylation enzym 100.0 2E-38 6.8E-43 275.2 22.6 233 12-250 29-284 (544)
11 4gr5_A Non-ribosomal peptide s 100.0 3.3E-38 1.1E-42 275.2 20.4 230 10-250 72-306 (570)
12 1v25_A Long-chain-fatty-acid-C 100.0 6E-38 2E-42 272.0 21.6 234 12-250 17-270 (541)
13 3kxw_A Saframycin MX1 syntheta 100.0 1.6E-38 5.5E-43 278.3 18.0 239 9-249 7-262 (590)
14 3t5a_A Long-chain-fatty-acid-- 100.0 1.6E-38 5.4E-43 271.9 17.2 231 12-249 23-284 (480)
15 3l8c_A D-alanine--poly(phospho 100.0 2.4E-37 8.3E-42 267.1 22.9 231 12-249 3-240 (521)
16 3rix_A Luciferase, luciferin 4 100.0 1.4E-37 4.9E-42 270.1 19.1 236 12-250 19-284 (550)
17 3e7w_A D-alanine--poly(phospho 100.0 2.4E-37 8.1E-42 266.6 20.0 230 14-250 2-237 (511)
18 3rg2_A Enterobactin synthase c 100.0 2.1E-37 7E-42 272.4 19.9 234 11-250 25-277 (617)
19 2d1s_A Luciferase, luciferin 4 100.0 5.2E-37 1.8E-41 266.4 22.1 235 9-249 21-285 (548)
20 3tsy_A Fusion protein 4-coumar 100.0 3.3E-37 1.1E-41 283.7 21.1 240 8-250 56-321 (979)
21 3ipl_A 2-succinylbenzoate--COA 100.0 2.6E-37 8.8E-42 265.8 18.9 230 14-250 2-254 (501)
22 3etc_A AMP-binding protein; ad 100.0 8.6E-37 3E-41 266.5 22.0 238 12-250 55-319 (580)
23 4fuq_A Malonyl COA synthetase; 100.0 6.6E-37 2.3E-41 263.3 20.9 225 17-244 4-241 (503)
24 2v7b_A Benzoate-coenzyme A lig 100.0 7.1E-37 2.4E-41 264.7 19.6 232 12-249 23-276 (529)
25 1pg4_A Acetyl-COA synthetase; 100.0 1.6E-36 5.5E-41 268.1 21.6 235 13-249 76-352 (652)
26 2vsq_A Surfactin synthetase su 100.0 2E-36 6.8E-41 285.0 22.4 229 13-249 464-699 (1304)
27 1ry2_A Acetyl-coenzyme A synth 100.0 5E-36 1.7E-40 265.3 23.2 234 13-249 82-358 (663)
28 3ite_A SIDN siderophore synthe 100.0 6.1E-36 2.1E-40 260.6 22.3 238 8-249 15-274 (562)
29 3gqw_A Fatty acid AMP ligase; 100.0 2.4E-36 8.2E-41 263.8 19.7 238 7-249 15-272 (576)
30 3c5e_A Acyl-coenzyme A synthet 100.0 8.8E-36 3E-40 259.7 22.7 232 12-249 37-299 (570)
31 3nyq_A Malonyl-COA ligase; A/B 100.0 3E-35 1E-39 253.1 10.5 220 10-249 19-245 (505)
32 4gs5_A Acyl-COA synthetase (AM 99.6 5.8E-16 2E-20 127.3 6.1 85 160-249 36-125 (358)
33 2y4o_A Phenylacetate-coenzyme 99.5 2.8E-14 9.7E-19 120.6 6.3 90 157-249 88-186 (443)
34 3qov_A Phenylacetate-coenzyme 99.4 1.8E-13 6E-18 115.5 6.5 90 157-249 81-180 (436)
35 2y27_A Phenylacetate-coenzyme 99.4 4.8E-13 1.6E-17 112.8 8.3 90 157-249 86-184 (437)
36 3hgu_A EHPF; phenazine, antibi 99.3 4.1E-13 1.4E-17 110.8 4.4 88 158-249 88-207 (369)
37 2y27_A Phenylacetate-coenzyme 95.8 0.089 3E-06 43.8 11.0 85 39-124 109-195 (437)
38 2y4o_A Phenylacetate-coenzyme 95.8 0.11 3.6E-06 43.4 11.2 85 39-124 111-197 (443)
39 3qov_A Phenylacetate-coenzyme 95.7 0.12 4.2E-06 42.9 11.1 86 39-125 105-192 (436)
40 3ipl_A 2-succinylbenzoate--COA 93.2 1.6 5.5E-05 36.8 12.4 97 26-126 161-266 (501)
41 4gs5_A Acyl-COA synthetase (AM 92.8 1.1 3.6E-05 36.2 10.3 111 6-125 18-137 (358)
42 3hgu_A EHPF; phenazine, antibi 92.1 0.62 2.1E-05 37.6 8.1 85 39-125 110-219 (369)
43 2d1s_A Luciferase, luciferin 4 90.7 2.1 7.1E-05 36.7 10.3 96 28-125 192-297 (548)
44 3rix_A Luciferase, luciferin 4 89.9 2.5 8.6E-05 36.1 10.2 86 39-125 209-295 (550)
45 1mdb_A 2,3-dihydroxybenzoate-A 89.6 4.9 0.00017 34.2 11.8 96 26-125 180-286 (539)
46 3o83_A Peptide arylation enzym 89.5 4.4 0.00015 34.6 11.4 94 27-124 190-294 (544)
47 3r44_A Fatty acyl COA syntheta 88.6 5 0.00017 34.0 11.1 82 39-125 189-272 (517)
48 3ivr_A Putative long-chain-fat 87.3 8.2 0.00028 32.5 11.6 83 39-125 179-262 (509)
49 3fce_A D-alanine--poly(phospho 87.2 2.7 9.4E-05 35.5 8.6 96 26-124 142-248 (512)
50 3rg2_A Enterobactin synthase c 84.6 16 0.00055 31.6 12.3 94 27-124 183-287 (617)
51 3kxw_A Saframycin MX1 syntheta 84.6 5.2 0.00018 34.4 9.2 94 26-122 165-271 (590)
52 3e7w_A D-alanine--poly(phospho 84.0 6.7 0.00023 33.1 9.4 96 26-124 141-247 (511)
53 3tbh_A O-acetyl serine sulfhyd 83.7 7.2 0.00024 31.1 9.0 91 28-120 35-127 (334)
54 4b2g_A GH3-1 auxin conjugating 82.8 0.51 1.8E-05 41.0 2.0 32 157-188 95-127 (609)
55 1t5h_X 4-chlorobenzoyl COA lig 82.7 6.9 0.00024 32.9 9.0 96 26-125 151-258 (504)
56 3c5e_A Acyl-coenzyme A synthet 82.6 12 0.00041 32.2 10.5 97 27-126 205-312 (570)
57 3g7s_A Long-chain-fatty-acid-- 81.9 9 0.00031 32.7 9.5 83 39-125 199-282 (549)
58 3nyq_A Malonyl-COA ligase; A/B 78.9 22 0.00074 29.9 10.8 94 26-124 153-256 (505)
59 4eql_A 4-substituted benzoates 78.8 0.81 2.8E-05 39.6 1.9 31 158-188 90-121 (581)
60 4epl_A Jasmonic acid-amido syn 78.7 0.78 2.7E-05 39.7 1.7 32 157-188 94-126 (581)
61 3vc3_A Beta-cyanoalnine syntha 78.3 13 0.00044 29.8 8.7 66 55-120 76-142 (344)
62 3ni2_A 4-coumarate:COA ligase; 77.6 7.7 0.00026 33.0 7.6 99 26-125 176-285 (536)
63 1v25_A Long-chain-fatty-acid-C 77.5 9.5 0.00032 32.5 8.2 85 39-124 195-280 (541)
64 1amu_A GRSA, gramicidin synthe 77.1 10 0.00034 32.6 8.2 96 27-125 181-287 (563)
65 3t5a_A Long-chain-fatty-acid-- 74.6 19 0.00064 29.8 9.2 91 26-120 181-290 (480)
66 4gr5_A Non-ribosomal peptide s 74.1 13 0.00045 31.8 8.2 96 26-125 212-317 (570)
67 4dg8_A PA1221; ANL superfamily 73.6 15 0.00051 32.0 8.5 95 27-125 163-267 (620)
68 1pg4_A Acetyl-COA synthetase; 72.6 19 0.00065 31.5 9.0 85 39-125 275-364 (652)
69 3gqw_A Fatty acid AMP ligase; 70.4 21 0.00073 30.3 8.7 94 27-122 175-281 (576)
70 3tsy_A Fusion protein 4-coumar 70.0 20 0.00068 33.1 8.8 98 26-124 223-331 (979)
71 4aec_A Cysteine synthase, mito 69.0 31 0.0011 28.5 9.0 64 56-119 165-229 (430)
72 2v7b_A Benzoate-coenzyme A lig 67.4 22 0.00076 30.0 8.1 96 27-125 182-288 (529)
73 4h1h_A LMO1638 protein; MCCF-l 66.9 31 0.0011 27.3 8.3 60 60-119 8-86 (327)
74 1ry2_A Acetyl-coenzyme A synth 66.9 26 0.00087 30.8 8.6 85 159-248 95-187 (663)
75 3l8c_A D-alanine--poly(phospho 66.9 41 0.0014 28.2 9.7 96 27-123 144-250 (521)
76 4fuq_A Malonyl COA synthetase; 65.6 13 0.00045 31.2 6.3 68 179-248 27-101 (503)
77 2q3b_A Cysteine synthase A; py 64.7 48 0.0016 25.8 9.2 89 28-119 31-121 (313)
78 3sr3_A Microcin immunity prote 64.6 36 0.0012 27.1 8.3 60 60-119 9-87 (336)
79 3tla_A MCCF; serine protease, 63.0 40 0.0014 27.3 8.3 61 59-119 38-117 (371)
80 4eez_A Alcohol dehydrogenase 1 62.7 17 0.00058 28.8 6.2 77 39-118 136-215 (348)
81 3etc_A AMP-binding protein; ad 62.6 26 0.0009 30.1 7.7 98 26-126 223-331 (580)
82 3ju7_A Putative PLP-dependent 62.3 25 0.00084 28.3 7.1 60 55-117 69-135 (377)
83 2pqm_A Cysteine synthase; OASS 61.2 54 0.0019 26.0 8.9 63 56-119 69-132 (343)
84 1z7w_A Cysteine synthase; tran 60.9 58 0.002 25.5 9.2 65 56-120 57-122 (322)
85 3tqh_A Quinone oxidoreductase; 60.5 35 0.0012 26.6 7.6 77 39-119 125-204 (321)
86 2egu_A Cysteine synthase; O-ac 60.5 53 0.0018 25.5 8.6 90 28-120 29-120 (308)
87 4e5s_A MCCFLIKE protein (BA_56 58.3 45 0.0015 26.5 7.8 60 60-119 8-86 (331)
88 1eg5_A Aminotransferase; PLP-d 57.6 62 0.0021 25.4 8.8 57 61-118 86-146 (384)
89 3dwg_A Cysteine synthase B; su 56.9 67 0.0023 25.3 8.6 63 56-119 64-127 (325)
90 3ri6_A O-acetylhomoserine sulf 56.6 62 0.0021 26.6 8.7 56 61-118 118-174 (430)
91 3l6b_A Serine racemase; pyrido 56.0 25 0.00087 28.0 6.1 50 72-121 83-132 (346)
92 3dzz_A Putative pyridoxal 5'-p 54.6 66 0.0022 25.4 8.5 55 61-118 106-167 (391)
93 1zsy_A Mitochondrial 2-enoyl t 53.7 81 0.0028 25.0 9.0 79 39-118 139-223 (357)
94 3ite_A SIDN siderophore synthe 53.4 33 0.0011 29.1 6.8 85 39-123 194-284 (562)
95 3goh_A Alcohol dehydrogenase, 51.6 47 0.0016 25.8 7.0 73 39-116 115-190 (315)
96 3ijw_A Aminoglycoside N3-acety 51.0 13 0.00043 28.7 3.3 23 50-72 18-40 (268)
97 1ve1_A O-acetylserine sulfhydr 50.7 85 0.0029 24.3 9.3 65 55-120 50-117 (304)
98 1mdo_A ARNB aminotransferase; 48.3 66 0.0023 25.5 7.5 59 56-118 71-134 (393)
99 2nyg_A YOKD protein; PFAM02522 48.1 15 0.0005 28.4 3.3 21 52-72 18-38 (273)
100 3sma_A FRBF; N-acetyl transfer 48.0 15 0.00051 28.6 3.3 30 36-72 18-47 (286)
101 1o69_A Aminotransferase; struc 47.9 79 0.0027 25.2 8.0 61 56-119 64-130 (394)
102 2ayi_A Aminopeptidase T; metal 47.3 39 0.0013 27.8 5.9 50 45-94 4-57 (408)
103 3two_A Mannitol dehydrogenase; 47.1 87 0.003 24.6 8.0 74 39-116 149-225 (348)
104 3s2e_A Zinc-containing alcohol 45.4 69 0.0024 25.1 7.1 76 39-118 139-217 (340)
105 1y7l_A O-acetylserine sulfhydr 45.3 1.1E+02 0.0036 23.9 8.9 90 28-120 26-117 (316)
106 1h2b_A Alcohol dehydrogenase; 45.0 71 0.0024 25.3 7.1 60 55-118 176-238 (359)
107 2vsq_A Surfactin synthetase su 44.3 50 0.0017 31.6 7.0 96 26-125 605-711 (1304)
108 1gu7_A Enoyl-[acyl-carrier-pro 44.0 82 0.0028 24.9 7.4 79 39-118 138-223 (364)
109 4b7c_A Probable oxidoreductase 43.5 1.1E+02 0.0037 23.9 8.0 59 57-117 143-201 (336)
110 1zjc_A Aminopeptidase AMPS; me 43.4 43 0.0015 27.6 5.6 50 45-94 7-60 (418)
111 2duw_A Putative COA-binding pr 43.2 65 0.0022 21.8 5.8 49 65-114 72-120 (145)
112 2e7j_A SEP-tRNA:Cys-tRNA synth 43.1 1.2E+02 0.004 23.7 9.2 55 61-118 90-154 (371)
113 3b8x_A WBDK, pyridoxamine 5-ph 43.0 1.2E+02 0.0042 23.9 8.6 54 60-117 76-134 (390)
114 3mfq_A TROA, high-affinity zin 42.9 23 0.00078 27.4 3.7 82 41-124 137-225 (282)
115 3nvb_A Uncharacterized protein 42.7 1.4E+02 0.0046 24.4 10.1 99 21-123 215-340 (387)
116 3krt_A Crotonyl COA reductase; 42.6 91 0.0031 25.7 7.6 77 39-118 198-280 (456)
117 2jtq_A Phage shock protein E; 42.4 53 0.0018 19.5 5.6 45 38-89 22-66 (85)
118 4ej6_A Putative zinc-binding d 42.3 88 0.003 25.0 7.3 59 55-117 174-233 (370)
119 3jv7_A ADH-A; dehydrogenase, n 42.2 70 0.0024 25.1 6.7 77 40-119 143-224 (345)
120 3a2b_A Serine palmitoyltransfe 41.9 1.3E+02 0.0044 23.9 9.2 56 61-120 124-182 (398)
121 3isl_A Purine catabolism prote 41.9 1.1E+02 0.0037 24.4 7.9 58 61-119 83-144 (416)
122 3a2k_A TRNA(Ile)-lysidine synt 41.3 1.4E+02 0.0048 24.8 8.6 69 51-119 4-86 (464)
123 1vjk_A Molybdopterin convertin 41.2 42 0.0015 21.0 4.3 47 10-72 34-94 (98)
124 2z9v_A Aspartate aminotransfer 41.0 1.1E+02 0.0039 24.0 7.9 58 61-119 80-142 (392)
125 1elu_A L-cysteine/L-cystine C- 40.5 1E+02 0.0036 24.1 7.6 58 60-118 97-161 (390)
126 3n75_A LDC, lysine decarboxyla 39.6 1E+02 0.0034 27.5 7.6 56 61-119 232-306 (715)
127 3ndn_A O-succinylhomoserine su 39.6 1.5E+02 0.0052 24.0 8.7 56 61-118 117-173 (414)
128 1oft_A SULA, hypothetical prot 39.5 96 0.0033 21.7 6.4 37 53-89 89-125 (161)
129 1toa_A Tromp-1, protein (perip 39.5 33 0.0011 27.0 4.2 81 42-124 172-259 (313)
130 1zl0_A Hypothetical protein PA 39.5 1.3E+02 0.0043 23.7 7.5 60 60-119 13-88 (311)
131 4h27_A L-serine dehydratase/L- 39.3 67 0.0023 25.8 6.1 54 68-121 96-149 (364)
132 4dup_A Quinone oxidoreductase; 38.9 1.3E+02 0.0044 23.7 7.8 76 39-117 139-218 (353)
133 4hvk_A Probable cysteine desul 38.8 73 0.0025 24.9 6.3 56 62-118 86-145 (382)
134 1ofu_X SULA, hypothetical prot 38.7 82 0.0028 20.7 7.1 54 52-105 46-101 (119)
135 2z61_A Probable aspartate amin 38.4 1.2E+02 0.0043 23.6 7.7 51 61-117 110-160 (370)
136 3fpc_A NADP-dependent alcohol 38.4 82 0.0028 24.8 6.5 76 39-118 139-218 (352)
137 3qwb_A Probable quinone oxidor 38.0 1.4E+02 0.0048 23.2 9.2 57 59-118 144-200 (334)
138 2l66_A SSO7C4, transcriptional 37.6 42 0.0014 18.3 3.3 19 56-74 21-39 (53)
139 3frk_A QDTB; aminotransferase, 37.4 53 0.0018 25.9 5.3 58 56-117 68-130 (373)
140 3e19_A FEOA; transcriptional r 37.3 37 0.0013 20.1 3.4 23 50-72 25-47 (77)
141 2d59_A Hypothetical protein PH 37.2 84 0.0029 21.2 5.6 48 65-113 79-126 (144)
142 2cf5_A Atccad5, CAD, cinnamyl 37.2 1.3E+02 0.0044 23.8 7.5 78 39-119 152-233 (357)
143 2ch1_A 3-hydroxykynurenine tra 37.1 1.5E+02 0.0051 23.4 8.0 57 61-118 90-150 (396)
144 4eye_A Probable oxidoreductase 36.9 1.1E+02 0.0038 24.0 7.1 77 39-118 131-211 (342)
145 3ujp_A Mn transporter subunit; 36.5 44 0.0015 26.2 4.5 81 42-124 165-252 (307)
146 1y81_A Conserved hypothetical 36.3 71 0.0024 21.4 5.0 49 64-113 70-118 (138)
147 4dq6_A Putative pyridoxal phos 36.2 1.4E+02 0.0047 23.5 7.6 52 61-117 111-170 (391)
148 1e5e_A MGL, methionine gamma-l 36.1 1.6E+02 0.0054 23.7 8.0 56 61-118 98-154 (404)
149 2rkb_A Serine dehydratase-like 36.1 90 0.0031 24.3 6.3 53 69-121 58-110 (318)
150 2c81_A Glutamine-2-deoxy-scyll 36.0 79 0.0027 25.4 6.2 58 56-117 74-136 (418)
151 4eb5_A Probable cysteine desul 36.0 67 0.0023 25.2 5.7 56 62-118 86-145 (382)
152 4a0s_A Octenoyl-COA reductase/ 35.9 1.1E+02 0.0039 25.0 7.2 76 39-117 190-271 (447)
153 3pc3_A CG1753, isoform A; CBS, 35.7 1.9E+02 0.0066 24.4 8.7 63 56-119 104-167 (527)
154 1o58_A O-acetylserine sulfhydr 35.6 1.5E+02 0.0052 22.8 9.0 63 55-120 57-120 (303)
155 1b9h_A AHBA synthase, protein 35.2 1.2E+02 0.0043 23.8 7.2 57 56-116 70-131 (388)
156 1d2f_A MALY protein; aminotran 35.2 1.6E+02 0.0056 23.1 8.2 54 61-117 108-168 (390)
157 3uko_A Alcohol dehydrogenase c 35.2 1.7E+02 0.0058 23.3 8.0 76 39-118 165-245 (378)
158 3jx9_A Putative phosphoheptose 35.1 71 0.0024 22.6 4.9 39 58-96 72-112 (170)
159 2jgn_A DBX, DDX3, ATP-dependen 35.1 1.2E+02 0.004 21.4 9.4 74 48-123 32-108 (185)
160 1t3i_A Probable cysteine desul 34.8 1.2E+02 0.0042 24.0 7.2 57 61-118 115-176 (420)
161 1c7n_A Cystalysin; transferase 34.8 1.5E+02 0.0051 23.4 7.6 54 61-117 110-170 (399)
162 1yqd_A Sinapyl alcohol dehydro 34.8 1.7E+02 0.0058 23.2 8.1 62 55-119 178-240 (366)
163 3kax_A Aminotransferase, class 34.5 1.6E+02 0.0056 22.9 8.7 53 61-117 103-162 (383)
164 3ohp_A Hypoxanthine phosphorib 34.4 1.2E+02 0.0041 21.4 6.2 21 39-59 8-28 (177)
165 1y80_A Predicted cobalamin bin 34.2 1.3E+02 0.0045 21.7 7.9 83 38-120 55-148 (210)
166 2oga_A Transaminase; PLP-depen 34.2 1.4E+02 0.0049 23.7 7.4 58 56-117 95-157 (399)
167 2v03_A Cysteine synthase B; py 34.1 1.6E+02 0.0055 22.7 8.9 64 55-119 51-115 (303)
168 3kki_A CAI-1 autoinducer synth 33.9 1.4E+02 0.0049 23.7 7.4 56 61-120 140-195 (409)
169 3uog_A Alcohol dehydrogenase; 33.7 1E+02 0.0036 24.4 6.4 75 39-117 161-239 (363)
170 3nnk_A Ureidoglycine-glyoxylat 33.2 1.8E+02 0.0061 23.0 8.0 58 61-119 85-146 (411)
171 2a3d_A Protein (de novo three- 33.1 42 0.0014 18.6 2.7 20 41-60 3-22 (73)
172 4a2c_A Galactitol-1-phosphate 33.0 1.4E+02 0.0048 23.3 7.1 62 54-119 151-213 (346)
173 1xvl_A Mn transporter, MNTC pr 32.9 44 0.0015 26.3 4.0 81 42-124 179-266 (321)
174 1uuf_A YAHK, zinc-type alcohol 32.8 1.3E+02 0.0045 23.9 6.9 75 40-118 168-245 (369)
175 3hh8_A Metal ABC transporter s 32.7 45 0.0016 25.9 4.0 80 42-123 158-244 (294)
176 3mhx_A Putative ferrous iron t 32.6 47 0.0016 20.1 3.3 23 51-73 26-48 (85)
177 2cb1_A O-acetyl homoserine sul 32.5 1.4E+02 0.0048 24.0 7.2 55 61-118 92-147 (412)
178 1kol_A Formaldehyde dehydrogen 32.5 1.4E+02 0.0049 23.9 7.2 57 56-116 178-235 (398)
179 3ppl_A Aspartate aminotransfer 32.5 1.9E+02 0.0066 23.1 9.9 53 64-119 133-188 (427)
180 3cq5_A Histidinol-phosphate am 32.3 1.8E+02 0.0061 22.7 8.0 55 61-118 113-171 (369)
181 2e18_A NH(3)-dependent NAD(+) 32.2 1.5E+02 0.005 22.2 6.8 74 40-119 4-83 (257)
182 1vjo_A Alanine--glyoxylate ami 32.0 1.9E+02 0.0063 22.8 7.9 57 61-118 106-166 (393)
183 1e0c_A Rhodanese, sulfurtransf 31.9 77 0.0026 23.9 5.2 40 50-89 67-107 (271)
184 1pl8_A Human sorbitol dehydrog 31.7 1.5E+02 0.0052 23.3 7.1 75 39-118 145-223 (356)
185 3gaz_A Alcohol dehydrogenase s 31.6 1.6E+02 0.0054 23.1 7.2 74 39-116 122-199 (343)
186 3zrp_A Serine-pyruvate aminotr 31.4 1.5E+02 0.0052 23.1 7.1 58 61-119 74-135 (384)
187 2cw6_A Hydroxymethylglutaryl-C 31.1 1.8E+02 0.0062 22.4 7.4 94 12-112 155-263 (298)
188 1vj0_A Alcohol dehydrogenase, 31.1 1.5E+02 0.0051 23.7 7.0 76 39-118 167-247 (380)
189 3cai_A Possible aminotransfera 30.8 1.5E+02 0.0051 23.5 7.0 57 61-118 110-172 (406)
190 2k5l_A FEOA; structure, NESG, 30.7 46 0.0016 20.0 3.0 23 51-73 23-45 (81)
191 3kgw_A Alanine-glyoxylate amin 30.6 1.9E+02 0.0066 22.5 8.3 58 61-119 95-156 (393)
192 1urh_A 3-mercaptopyruvate sulf 30.5 77 0.0026 24.0 5.0 40 50-89 72-112 (280)
193 1p5j_A L-serine dehydratase; l 30.5 1.2E+02 0.0041 24.3 6.3 53 69-121 97-149 (372)
194 3ble_A Citramalate synthase fr 30.5 2E+02 0.0069 22.7 7.6 91 13-110 169-268 (337)
195 2wlr_A Putative thiosulfate su 30.4 92 0.0031 25.5 5.7 52 39-90 171-229 (423)
196 2ef7_A Hypothetical protein ST 30.4 1.1E+02 0.0037 19.6 5.4 47 6-52 77-126 (133)
197 2j8z_A Quinone oxidoreductase; 30.3 2E+02 0.0068 22.6 7.7 76 39-117 134-213 (354)
198 1yfb_A Transition state regula 30.3 58 0.002 18.4 3.1 19 56-74 31-49 (59)
199 2fnu_A Aminotransferase; prote 30.0 94 0.0032 24.3 5.6 52 61-116 71-126 (375)
200 3aey_A Threonine synthase; PLP 29.9 1.1E+02 0.0038 24.2 5.9 53 69-121 81-134 (351)
201 2prs_A High-affinity zinc upta 29.9 50 0.0017 25.4 3.8 57 66-124 175-236 (284)
202 3hvy_A Cystathionine beta-lyas 29.8 1.2E+02 0.0043 24.8 6.4 59 61-119 113-184 (427)
203 4d9i_A Diaminopropionate ammon 29.8 2.2E+02 0.0076 23.0 9.1 54 69-122 116-169 (398)
204 2lx9_A Ferrous iron transport 29.7 62 0.0021 19.6 3.5 23 50-72 20-42 (83)
205 1rjw_A ADH-HT, alcohol dehydro 29.7 1.7E+02 0.0058 22.8 7.0 59 55-117 156-214 (339)
206 2q5w_D Molybdopterin convertin 29.5 68 0.0023 18.7 3.6 47 10-72 23-73 (77)
207 1piw_A Hypothetical zinc-type 29.5 1.7E+02 0.0058 23.1 7.0 76 39-118 152-230 (360)
208 3pdi_B Nitrogenase MOFE cofact 29.3 2.1E+02 0.0073 23.7 7.7 70 64-134 313-398 (458)
209 2h3j_A Hypothetical protein PA 29.2 47 0.0016 19.4 2.8 23 51-73 22-44 (75)
210 2o1e_A YCDH; alpha-beta protei 29.1 51 0.0017 25.8 3.7 79 42-124 167-252 (312)
211 1e0c_A Rhodanese, sulfurtransf 29.1 91 0.0031 23.4 5.2 40 51-90 210-249 (271)
212 1e3j_A NADP(H)-dependent ketos 29.0 1.8E+02 0.0062 22.8 7.1 74 39-117 142-218 (352)
213 1kmj_A Selenocysteine lyase; p 29.0 1.5E+02 0.0052 23.3 6.7 58 61-119 110-172 (406)
214 3i16_A Aluminum resistance pro 28.8 71 0.0024 26.3 4.7 59 61-119 112-184 (427)
215 3gqv_A Enoyl reductase; medium 28.8 1.8E+02 0.006 23.1 7.0 52 62-118 163-215 (371)
216 3t18_A Aminotransferase class 28.7 2.2E+02 0.0075 22.6 8.4 54 61-117 122-184 (413)
217 3gi1_A LBP, laminin-binding pr 28.7 61 0.0021 25.0 4.1 80 42-125 156-242 (286)
218 2dr1_A PH1308 protein, 386AA l 28.6 2.1E+02 0.0071 22.3 8.2 57 61-118 92-153 (386)
219 3uwc_A Nucleotide-sugar aminot 28.3 94 0.0032 24.4 5.3 57 56-116 70-130 (374)
220 1gr0_A Inositol-3-phosphate sy 28.3 2.3E+02 0.008 22.8 7.8 59 52-113 130-192 (367)
221 1dqn_A Guanine phosphoribosylt 28.2 1.3E+02 0.0045 22.3 5.7 46 38-83 34-80 (230)
222 2jwk_A Protein TOLR; periplasm 28.1 90 0.0031 17.9 4.7 12 38-49 25-36 (74)
223 3nyt_A Aminotransferase WBPE; 28.1 55 0.0019 25.8 3.9 59 55-117 66-129 (367)
224 2d1f_A Threonine synthase; ami 28.0 1.5E+02 0.005 23.6 6.4 53 69-121 89-142 (360)
225 1p0f_A NADP-dependent alcohol 28.0 2.2E+02 0.0077 22.5 7.6 57 58-118 186-243 (373)
226 2huf_A Alanine glyoxylate amin 27.9 2.2E+02 0.0075 22.3 8.0 57 61-118 91-151 (393)
227 3po0_A Small archaeal modifier 27.7 1E+02 0.0035 18.6 4.3 47 10-72 25-85 (89)
228 3ss7_X D-serine dehydratase; t 27.7 2.6E+02 0.0088 23.1 9.3 57 67-123 162-218 (442)
229 3pdi_A Nitrogenase MOFE cofact 27.6 2.7E+02 0.0093 23.3 10.4 54 64-118 332-386 (483)
230 2fsx_A RV0390, COG0607: rhodan 27.4 43 0.0015 22.7 2.8 38 52-89 68-105 (148)
231 3lvm_A Cysteine desulfurase; s 27.4 2.3E+02 0.008 22.5 8.4 57 62-119 111-171 (423)
232 2ctz_A O-acetyl-L-homoserine s 27.3 2.4E+02 0.0084 22.7 8.3 57 61-119 94-152 (421)
233 2dph_A Formaldehyde dismutase; 27.2 2.1E+02 0.0072 22.9 7.3 55 56-114 178-233 (398)
234 2zsj_A Threonine synthase; PLP 27.1 1.2E+02 0.0042 24.0 5.8 53 69-121 83-136 (352)
235 1jbq_A B, cystathionine beta-s 27.1 2.7E+02 0.0091 23.0 8.8 62 57-119 153-215 (435)
236 2gcx_A FEOA, ferrous iron tran 27.0 41 0.0014 19.7 2.2 23 50-72 20-42 (75)
237 3ecd_A Serine hydroxymethyltra 27.0 1.9E+02 0.0065 23.0 7.1 58 61-118 115-179 (425)
238 1mio_B Nitrogenase molybdenum 27.0 2.5E+02 0.0085 23.2 7.8 48 63-111 311-362 (458)
239 3op7_A Aminotransferase class 26.9 1.3E+02 0.0046 23.5 6.0 54 61-118 102-161 (375)
240 3f9t_A TDC, L-tyrosine decarbo 26.9 2.2E+02 0.0077 22.1 9.1 55 60-117 119-177 (397)
241 3bb8_A CDP-4-keto-6-deoxy-D-gl 26.9 2.2E+02 0.0074 23.0 7.4 53 61-117 107-164 (437)
242 4df3_A Fibrillarin-like rRNA/T 26.7 1E+02 0.0036 22.9 4.9 57 50-109 64-121 (233)
243 3o7m_A Hypoxanthine phosphorib 26.7 1.7E+02 0.0059 20.8 6.1 21 39-59 12-32 (186)
244 1uar_A Rhodanese; sulfurtransf 26.7 79 0.0027 24.0 4.4 40 50-89 219-259 (285)
245 1tt7_A YHFP; alcohol dehydroge 26.6 2.1E+02 0.0071 22.1 7.0 76 39-117 119-201 (330)
246 3euc_A Histidinol-phosphate am 26.5 1.2E+02 0.0041 23.6 5.7 55 61-118 106-164 (367)
247 3hzu_A Thiosulfate sulfurtrans 26.2 1.2E+02 0.004 23.7 5.4 40 50-89 97-137 (318)
248 2trc_P Phosducin, MEKA, PP33; 26.2 6.2 0.00021 29.2 -2.0 18 169-187 3-20 (217)
249 2k4y_A FEOA-like protein; GFT 26.0 57 0.0019 19.9 2.8 22 51-72 26-47 (86)
250 2h6e_A ADH-4, D-arabinose 1-de 26.0 2.3E+02 0.008 22.0 7.4 53 60-117 168-222 (344)
251 3mbk_A Ubiquitin-associated an 26.0 81 0.0028 23.7 4.3 37 40-76 161-197 (264)
252 2k0z_A Uncharacterized protein 25.9 93 0.0032 19.6 4.1 43 39-88 38-80 (110)
253 3d1p_A Putative thiosulfate su 25.8 1.2E+02 0.0042 19.9 4.9 52 39-90 62-117 (139)
254 2bkw_A Alanine-glyoxylate amin 25.6 2.4E+02 0.0081 21.9 8.4 56 62-118 84-144 (385)
255 3u7q_B Nitrogenase molybdenum- 25.5 2.8E+02 0.0097 23.5 7.9 32 63-95 363-394 (523)
256 1wy5_A TILS, hypothetical UPF0 25.5 2.4E+02 0.0081 21.9 9.1 70 49-118 8-91 (317)
257 3jzl_A Putative cystathionine 25.3 1.3E+02 0.0045 24.4 5.7 58 61-119 98-167 (409)
258 1zd0_A Hypothetical protein PF 25.1 1.7E+02 0.0059 20.2 5.9 56 52-110 88-144 (150)
259 2rfv_A Methionine gamma-lyase; 25.0 2.6E+02 0.0088 22.2 8.2 56 61-118 100-156 (398)
260 2cqa_A RUVB-like 2; TIP48, TIP 24.9 75 0.0026 20.0 3.1 23 50-72 52-74 (95)
261 1j32_A Aspartate aminotransfer 24.7 2.5E+02 0.0086 21.9 8.2 53 61-117 111-169 (388)
262 4dvj_A Putative zinc-dependent 24.7 2E+02 0.0069 22.7 6.7 78 39-119 138-225 (363)
263 3d4i_A STS-2 protein; PGM, 2H- 24.7 1.5E+02 0.0052 22.2 5.7 36 40-75 170-205 (273)
264 3cog_A Cystathionine gamma-lya 24.6 2.1E+02 0.0073 22.9 6.9 56 61-118 102-158 (403)
265 2ehv_A Hypothetical protein PH 24.6 1.7E+02 0.0057 21.3 5.9 49 60-108 26-79 (251)
266 3jyn_A Quinone oxidoreductase; 24.4 2.4E+02 0.0084 21.7 8.9 77 39-118 112-192 (325)
267 2hcy_A Alcohol dehydrogenase 1 24.4 2.2E+02 0.0076 22.2 6.8 76 39-117 142-220 (347)
268 3utn_X Thiosulfate sulfurtrans 24.4 1.6E+02 0.0055 23.2 5.8 37 59-95 270-306 (327)
269 2nx9_A Oxaloacetate decarboxyl 24.2 3.1E+02 0.011 22.9 7.9 92 13-112 158-258 (464)
270 3utn_X Thiosulfate sulfurtrans 24.2 1E+02 0.0034 24.4 4.6 41 49-89 98-139 (327)
271 3ip1_A Alcohol dehydrogenase, 24.1 2.8E+02 0.0096 22.3 8.5 55 60-118 210-265 (404)
272 3l8a_A METC, putative aminotra 24.0 2.1E+02 0.0071 22.9 6.8 55 61-118 140-201 (421)
273 1ydo_A HMG-COA lyase; TIM-barr 23.9 1.9E+02 0.0064 22.5 6.1 94 12-112 156-264 (307)
274 2ywu_A Hypoxanthine-guanine ph 23.7 2E+02 0.0067 20.3 6.1 22 38-59 12-33 (181)
275 1e3i_A Alcohol dehydrogenase, 23.6 2.7E+02 0.0094 22.0 7.3 76 39-118 167-247 (376)
276 1f0z_A THis protein; ubiquitin 23.6 70 0.0024 18.2 2.8 50 10-72 13-62 (66)
277 2i2x_B MTAC, methyltransferase 23.4 2.4E+02 0.0081 21.2 7.1 84 36-119 89-182 (258)
278 1iz0_A Quinone oxidoreductase; 23.2 1.8E+02 0.0062 22.1 6.0 76 39-117 98-176 (302)
279 3tqx_A 2-amino-3-ketobutyrate 23.1 1.6E+02 0.0054 23.2 5.8 55 61-119 124-183 (399)
280 3dr4_A Putative perosamine syn 23.0 1.1E+02 0.0036 24.3 4.7 57 57-117 89-150 (391)
281 2dr3_A UPF0273 protein PH0284; 22.9 1.8E+02 0.006 21.1 5.7 54 58-111 17-74 (247)
282 3ff4_A Uncharacterized protein 22.8 1.4E+02 0.0048 19.6 4.4 49 67-115 61-109 (122)
283 1z5z_A Helicase of the SNF2/RA 22.8 2.5E+02 0.0085 21.2 7.9 47 63-110 111-159 (271)
284 3n0l_A Serine hydroxymethyltra 22.7 1.5E+02 0.0051 23.6 5.6 59 61-119 108-172 (417)
285 2vyc_A Biodegradative arginine 22.6 3.2E+02 0.011 24.4 8.1 46 61-109 242-301 (755)
286 1fc4_A 2-amino-3-ketobutyrate 22.5 2.3E+02 0.0077 22.4 6.6 55 61-119 126-185 (401)
287 2d8a_A PH0655, probable L-thre 22.1 2.7E+02 0.0092 21.7 6.9 57 56-117 161-218 (348)
288 1cdo_A Alcohol dehydrogenase; 21.9 3E+02 0.01 21.7 7.4 76 39-118 164-244 (374)
289 3ht4_A Aluminum resistance pro 21.9 1.1E+02 0.0037 25.2 4.6 58 61-119 104-173 (431)
290 3gms_A Putative NADPH:quinone 21.8 2.4E+02 0.0083 21.9 6.5 76 39-118 116-196 (340)
291 1pq4_A Periplasmic binding pro 21.7 57 0.0019 25.2 2.7 79 42-124 167-250 (291)
292 1rqb_A Transcarboxylase 5S sub 21.5 3.8E+02 0.013 22.9 8.4 93 13-111 175-276 (539)
293 1t5i_A C_terminal domain of A 21.4 2E+02 0.007 19.7 8.5 69 50-121 20-91 (172)
294 1xa0_A Putative NADPH dependen 21.3 2.1E+02 0.0071 22.1 6.0 60 56-118 141-201 (328)
295 2j3h_A NADP-dependent oxidored 21.2 2.9E+02 0.01 21.4 7.2 58 58-117 150-207 (345)
296 3hvu_A Hypoxanthine phosphorib 21.1 2.2E+02 0.0075 20.6 5.6 21 39-59 34-54 (204)
297 1urh_A 3-mercaptopyruvate sulf 21.1 1.3E+02 0.0045 22.7 4.7 52 39-90 200-256 (280)
298 1uar_A Rhodanese; sulfurtransf 21.0 1.1E+02 0.0037 23.2 4.2 39 51-89 66-105 (285)
299 3pdw_A Uncharacterized hydrola 21.0 2.4E+02 0.0082 20.7 6.2 42 29-74 7-48 (266)
300 3qhx_A Cystathionine gamma-syn 21.0 3.1E+02 0.011 21.8 7.2 56 61-118 102-158 (392)
301 1b5p_A Protein (aspartate amin 21.0 2.5E+02 0.0085 22.1 6.6 53 61-117 112-170 (385)
302 2jhf_A Alcohol dehydrogenase E 21.0 3.1E+02 0.011 21.6 7.3 76 39-118 163-243 (374)
303 2vn8_A Reticulon-4-interacting 20.9 3.1E+02 0.011 21.6 7.8 53 61-118 181-234 (375)
304 1pff_A Methionine gamma-lyase; 20.7 2.8E+02 0.0096 21.1 7.1 56 61-118 34-90 (331)
305 3cx3_A Lipoprotein; zinc-bindi 20.7 45 0.0015 25.7 1.9 79 42-124 154-239 (284)
306 3olh_A MST, 3-mercaptopyruvate 20.6 98 0.0034 23.9 3.9 51 40-90 224-280 (302)
307 2k5f_A Ferrous iron transport 20.6 97 0.0033 19.8 3.2 24 50-73 21-44 (105)
308 3ly1_A Putative histidinol-pho 20.4 3E+02 0.01 21.1 8.9 54 61-117 89-147 (354)
309 1jvb_A NAD(H)-dependent alcoho 20.3 3.1E+02 0.011 21.3 7.9 75 39-117 143-222 (347)
310 2fzw_A Alcohol dehydrogenase c 20.3 3.2E+02 0.011 21.5 7.2 75 39-117 162-241 (373)
311 1jg8_A L-ALLO-threonine aldola 20.1 75 0.0026 24.6 3.2 57 61-117 74-138 (347)
312 1ni5_A Putative cell cycle pro 20.1 3.1E+02 0.01 22.5 6.9 58 61-118 10-80 (433)
313 3bww_A Protein of unknown func 20.1 2.2E+02 0.0076 22.3 5.6 48 11-58 247-295 (307)
314 3kc2_A Uncharacterized protein 20.1 61 0.0021 25.9 2.6 104 27-135 12-118 (352)
315 1rhs_A Sulfur-substituted rhod 20.0 1.5E+02 0.0052 22.6 4.9 40 51-90 227-266 (296)
No 1
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.9e-39 Score=278.81 Aligned_cols=239 Identities=20% Similarity=0.286 Sum_probs=190.5
Q ss_pred CCCcCchhhhHHHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHH
Q psy4550 5 NLSDYDAEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (251)
Q Consensus 5 ~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a 83 (251)
...+.+.+.++.++|.+.++++|+++|+++.+ ++.+||+||.++++++|.+|+++|+++||+|+++++|+++++++++|
T Consensus 8 ~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 87 (517)
T 3r44_A 8 HVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYG 87 (517)
T ss_dssp ----CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cCCCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHH
Confidence 34556778899999999999999999998642 23899999999999999999999999999999999999999999999
Q ss_pred HHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CC-eeeec--chhhhhhhhhhhcccCCCC
Q psy4550 84 IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VP-KVKLE--NDFLSKMISENEKLHNVDF 155 (251)
Q Consensus 84 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~--~~~~~~~~~~~~~~~~~~~ 155 (251)
|+++|++++|++|..+.+++.+++++++++++|+++...+.+.... .. .+... ..+..... ........
T Consensus 88 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 164 (517)
T 3r44_A 88 AAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLR---SAAADEPA 164 (517)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHH---HCCCCCCC
T ss_pred HHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhh---ccCcCCCC
Confidence 9999999999999999999999999999999999987765543221 11 11111 11111111 11112334
Q ss_pred CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecC
Q psy4550 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISD 230 (251)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~ 230 (251)
....++++++|+|||||||.||||++||+++.+.+......+++.++|++++.+|+ ....+.++..|+++++.+.
T Consensus 165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~ 244 (517)
T 3r44_A 165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQ 244 (517)
T ss_dssp CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCC
Confidence 45678999999999999999999999999999999999999999999999875543 2233455559999999987
Q ss_pred ccccCchHHHhhhhccccC
Q psy4550 231 EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 231 ~~~~~~~~~~~~i~~~~vt 249 (251)
+++..+++.|+++++|
T Consensus 245 ---~~~~~~~~~i~~~~~t 260 (517)
T 3r44_A 245 ---FDATKVWSLIVEERVC 260 (517)
T ss_dssp ---CCHHHHHHHHHHTTCC
T ss_pred ---CCHHHHHHHHHHhCCe
Confidence 9999999999999997
No 2
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=8.2e-39 Score=278.45 Aligned_cols=234 Identities=25% Similarity=0.473 Sum_probs=188.8
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
++...++.++|.+.++++|+++|+++ +++.+||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+++|
T Consensus 35 ~~~~~~l~~~l~~~a~~~p~~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 113 (563)
T 1amu_A 35 YPRDKTIHQLFEEQVSKRPNNVAIVC-ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAG 113 (563)
T ss_dssp CCTTCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHCCCCeEEEe-CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 44457899999999999999999985 67789999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCC--eeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEE
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP--KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYI 166 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 166 (251)
++++|++|.++.+++.+++++++++++|++++..+........ ......... .. ...........++++++|
T Consensus 114 av~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~d~a~i 187 (563)
T 1amu_A 114 GAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTI---KI---REGTNLHVPSKSTDLAYV 187 (563)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTT---TT---SCCSCCCCCCCTTSEEEE
T ss_pred CEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhh---cc---ccCccCCCCCCCCCeEEE
Confidence 9999999999999999999999999999998765544332211 111111100 00 001112234567899999
Q ss_pred EeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH-----HHHHHHHhhhcCccEEEecCccccCchHHHh
Q psy4550 167 VYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF-----FVWEMLRPLTQGIPMYVISDEVIYDPPRLTS 241 (251)
Q Consensus 167 ~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~ 241 (251)
+|||||||.||||++||+++.+.+......+++.++|++++.++ ..+.++.++..|+++++.+....+++..+++
T Consensus 188 ~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~ 267 (563)
T 1amu_A 188 IYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQ 267 (563)
T ss_dssp EEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHH
T ss_pred EECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHH
Confidence 99999999999999999999999888888899999999876443 3456788999999999988644579999999
Q ss_pred hhhccccC
Q psy4550 242 GWVRLPLN 249 (251)
Q Consensus 242 ~i~~~~vt 249 (251)
.|+++++|
T Consensus 268 ~i~~~~~t 275 (563)
T 1amu_A 268 YINQKEIT 275 (563)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCc
Confidence 99999987
No 3
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=7.4e-39 Score=275.53 Aligned_cols=232 Identities=18% Similarity=0.215 Sum_probs=184.1
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
|+++.++|.+.++++|+++|+.+.+ ++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 80 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV 80 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence 4589999999999999999998632 678999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEE--ccchhhhh-hccCCCeeeecchhhhhhhhhhh--cccCCCCCCCCCCCeEE
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVIT--KGEYMDRL-ERTSVPKVKLENDFLSKMISENE--KLHNVDFPQVGLDDIAY 165 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 165 (251)
++|++|..+.+++.+++++++++++++ +++..+.+ .......+.. +.+....... ...........++++++
T Consensus 81 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 157 (504)
T 1t5h_X 81 PALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF---LGDLVRDGEPYSYGPPIEDPQREPAQPAF 157 (504)
T ss_dssp EEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE---GGGTEETTEECCCSCCCCCCCCCTTSEEE
T ss_pred EEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE---ecchhhcCcccccCCccCCCCCCCCCeEE
Confidence 999999999999999999999999999 76655444 2211111111 1111110000 00111123456789999
Q ss_pred EEeccCCCCCCceEEeccHHHHHHHHHHHHhCCC--CCCChhhhhHHHH------HHHHHhhhcCccEEEecCccccCch
Q psy4550 166 IVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPY--DEDDREACNVFFV------WEMLRPLTQGIPMYVISDEVIYDPP 237 (251)
Q Consensus 166 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~~~ 237 (251)
|+|||||||.||||+++|+++.+.+......+++ .++|++++.+|++ ..++.++..|+++++.+. ++|.
T Consensus 158 i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~ 234 (504)
T 1t5h_X 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE---FRPV 234 (504)
T ss_dssp EEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS---CCHH
T ss_pred EEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC---CCHH
Confidence 9999999999999999999999999888888888 7888887755432 346788999999999987 9999
Q ss_pred HHHhhhhccccC
Q psy4550 238 RLTSGWVRLPLN 249 (251)
Q Consensus 238 ~~~~~i~~~~vt 249 (251)
.+++.|+++++|
T Consensus 235 ~~~~~i~~~~~t 246 (504)
T 1t5h_X 235 DALQLVQQEQVT 246 (504)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhCCe
Confidence 999999999998
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=6.9e-39 Score=278.34 Aligned_cols=233 Identities=18% Similarity=0.252 Sum_probs=190.9
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHH
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a 83 (251)
+..++.++|.+.++++|+++|+++.++ +++||+||.++++++|.+|+++|+++||+|+++++|+++++++++|
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 96 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYA 96 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 456899999999999999999986542 7899999999999999999999999999999999999999999999
Q ss_pred HHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc----hhhhhhhhhhhcccCCCC
Q psy4550 84 IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN----DFLSKMISENEKLHNVDF 155 (251)
Q Consensus 84 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 155 (251)
|+++|++++|++|..+.+++.+++++++++++|+++...+.+... ....+.... .+........ .....
T Consensus 97 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 173 (549)
T 3g7s_A 97 LWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGS---EDFEN 173 (549)
T ss_dssp HHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHHHSC---SCCCC
T ss_pred HHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHhcCc---ccccc
Confidence 999999999999999999999999999999999998876554332 222222111 1111111111 11122
Q ss_pred CCCC-CCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEec
Q psy4550 156 PQVG-LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVIS 229 (251)
Q Consensus 156 ~~~~-~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~ 229 (251)
.... ++++++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|+ +..++.++..|+++++.+
T Consensus 174 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 253 (549)
T 3g7s_A 174 VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG 253 (549)
T ss_dssp CCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES
T ss_pred ccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC
Confidence 2233 3899999999999999999999999999999999999999999998775543 233677899999999998
Q ss_pred CccccCchHHHhhhhccccC
Q psy4550 230 DEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 230 ~~~~~~~~~~~~~i~~~~vt 249 (251)
. +++..+++.|+++++|
T Consensus 254 ~---~~~~~~~~~i~~~~~t 270 (549)
T 3g7s_A 254 M---FNQEMLAENIEKYKGT 270 (549)
T ss_dssp S---CCHHHHHHHHHHTTCC
T ss_pred C---CCHHHHHHHHHHhCCe
Confidence 7 9999999999999997
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.1e-38 Score=276.35 Aligned_cols=238 Identities=17% Similarity=0.284 Sum_probs=192.9
Q ss_pred cCchhhhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550 8 DYDAEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (251)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~ 86 (251)
.+|...++.++|.+.++++|+++|+++. +++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||++
T Consensus 17 ~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~ 96 (536)
T 3ni2_A 17 YIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASH 96 (536)
T ss_dssp CCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 3455578999999999999999999874 468899999999999999999999999999999999999999999999999
Q ss_pred HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecch-----hhhhhhhhhhcccCCCCCC
Q psy4550 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEND-----FLSKMISENEKLHNVDFPQ 157 (251)
Q Consensus 87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 157 (251)
+|++++|++|..+.+++.+++++++++++|+++...+.+... ....+..+.. ......... ........
T Consensus 97 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 174 (536)
T 3ni2_A 97 RGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQAD--ENEAPQVD 174 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHTSC--GGGCCCCC
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhhcc--ccccccCC
Confidence 999999999999999999999999999999998776554432 2222222210 011111111 11123345
Q ss_pred CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH----hCCCCCCChhhhhHHHH------HHHHHhhhcCccEEE
Q psy4550 158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR----AYPYDEDDREACNVFFV------WEMLRPLTQGIPMYV 227 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~ 227 (251)
..++++++|+|||||||.||||+++|+++.+.+..... .+++.++|++++.+|++ ..++.++..|+++++
T Consensus 175 ~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 254 (536)
T 3ni2_A 175 ISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILI 254 (536)
T ss_dssp CCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEE
T ss_pred CCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEE
Confidence 67899999999999999999999999999988776554 44678889887755432 345788999999999
Q ss_pred ecCccccCchHHHhhhhccccCC
Q psy4550 228 ISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
.+. +++..+++.|+++++|.
T Consensus 255 ~~~---~~~~~~~~~i~~~~~t~ 274 (536)
T 3ni2_A 255 MPK---FEIGSLLGLIEKYKVSI 274 (536)
T ss_dssp CSS---CCHHHHHHHHHHHTCCE
T ss_pred cCC---CCHHHHHHHHHHhCCeE
Confidence 997 99999999999999973
No 6
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=8.4e-39 Score=280.86 Aligned_cols=231 Identities=23% Similarity=0.242 Sum_probs=188.4
Q ss_pred CCcCchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH 85 (251)
Q Consensus 6 ~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~ 85 (251)
..+.+...++.++|.++++++|+++|+++ .++++||+||.++++++|++|+++|+++||+|+++++|+++++++++||+
T Consensus 20 ~~~~~~~~tl~~~~~~~a~~~Pd~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 20 LLDLYAHPTVVARFSEMAALHPHREAIRD-RFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp TTSGGGSCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHhCCCCeEEEc-CCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 34455677999999999999999999985 66789999999999999999999999999999999999999999999999
Q ss_pred HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEE
Q psy4550 86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAY 165 (251)
Q Consensus 86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (251)
++|++++|++|..+.+++.+++++++++++++++........ ...... ................++++++
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~d~a~ 168 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG--LPCVPV--------RHLPAAPASVARPCFAADQIAY 168 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT--SCEEEG--------GGCCCCCCCSSCCCCCTTSEEE
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccC--Cceeee--------ccCCcCCccccCCCCCCCCeEE
Confidence 999999999999999999999999999999976554332211 111110 0001111112233456799999
Q ss_pred EEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHH
Q psy4550 166 IVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLT 240 (251)
Q Consensus 166 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~ 240 (251)
|+|||||||.||||+++|+++.+.+.. ...+++.++|++++.+++ .+.++.++..|+++++.+. ..++|..++
T Consensus 169 iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~ 246 (620)
T 4dg8_A 169 INFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL-GPLDPGVLR 246 (620)
T ss_dssp EEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS-SSCCHHHHH
T ss_pred EEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc-ccCCHHHHH
Confidence 999999999999999999999877655 456788899998775533 4568999999999999742 258999999
Q ss_pred hhhhccccC
Q psy4550 241 SGWVRLPLN 249 (251)
Q Consensus 241 ~~i~~~~vt 249 (251)
+.|+++++|
T Consensus 247 ~~i~~~~vt 255 (620)
T 4dg8_A 247 QLIGERGAD 255 (620)
T ss_dssp HHHHTTCCC
T ss_pred HHHHHhCCc
Confidence 999999997
No 7
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.4e-38 Score=274.15 Aligned_cols=234 Identities=20% Similarity=0.256 Sum_probs=185.8
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
..++.++|.+.++++|+++|+++ +++.+||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+++|+++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 83 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMV-DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHHCCCceEEEE-CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 35899999999999999999985 77899999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeee-ecchh--hhhhhhhhhcccCCCCCCCCCCCe
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVK-LENDF--LSKMISENEKLHNVDFPQVGLDDI 163 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 163 (251)
+|++|..+.+++.+++++++++++|++++..+.+... ....+. ..... ....... ............++++
T Consensus 84 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~ 162 (509)
T 3ivr_A 84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDL-ASDTPFSAPEFGAADG 162 (509)
T ss_dssp EECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGT-CCCSCCCCCCCCTTSE
T ss_pred EecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhc-cCCCCCCcCCCCcccc
Confidence 9999999999999999999999999998866542211 111111 11100 0000000 1111123345678899
Q ss_pred EEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCccccCchH
Q psy4550 164 AYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDEVIYDPPR 238 (251)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~~~~~ 238 (251)
++|+|||||||.||||+++|+++...+......+++.++|++++.+|++ ...+.++..|++.++... +++..
T Consensus 163 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~---~~~~~ 239 (509)
T 3ivr_A 163 FVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAK---FDPAQ 239 (509)
T ss_dssp EEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS---CCHHH
T ss_pred EEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecc---cCHHH
Confidence 9999999999999999999999999999999999999999998765432 234454555555666565 99999
Q ss_pred HHhhhhccccCC
Q psy4550 239 LTSGWVRLPLNG 250 (251)
Q Consensus 239 ~~~~i~~~~vt~ 250 (251)
+++.|+++++|.
T Consensus 240 ~~~~i~~~~~t~ 251 (509)
T 3ivr_A 240 AARDIEAHKVTV 251 (509)
T ss_dssp HHHHHHHHTCCE
T ss_pred HHHHHHHHCCcE
Confidence 999999999983
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.2e-38 Score=276.25 Aligned_cols=233 Identities=16% Similarity=0.152 Sum_probs=189.1
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
..++.++|.+.++++|+++|+++ .++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|+++
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEe-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 35899999999999999999985 67789999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhh--------hhhc-c-CCCeeeecch--hhhhhhhhhhcccCCCCCCCC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMD--------RLER-T-SVPKVKLEND--FLSKMISENEKLHNVDFPQVG 159 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~-~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 159 (251)
+|++|..+.+++.++++.++++++|++++... .+.. . ....+..... .+....... ..........
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 180 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLH--TEPVKLPEVK 180 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCC--CCCCCCCCCC
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhcc--ccccccCCCC
Confidence 99999999999999999999999999875321 1111 0 1112221111 000111000 0111223456
Q ss_pred CCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----H--HHHHhhhcCccEEEecCcc
Q psy4550 160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----W--EMLRPLTQGIPMYVISDEV 232 (251)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~l~~G~~~v~~~~~~ 232 (251)
++++++|+|||||||.||||+++|+++.+.+......++++++|++++.+|++ . .++.++..|+++++.+.
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~-- 258 (539)
T 1mdb_A 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS-- 258 (539)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSS--
T ss_pred cCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCC--
Confidence 78999999999999999999999999999998888888999999987755431 1 47889999999999987
Q ss_pred ccCchHHHhhhhccccCC
Q psy4550 233 IYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 233 ~~~~~~~~~~i~~~~vt~ 250 (251)
+++..+++.|+++++|.
T Consensus 259 -~~~~~~~~~i~~~~~t~ 275 (539)
T 1mdb_A 259 -PSPDDAFPLIEREKVTI 275 (539)
T ss_dssp -SSHHHHHHHHHHHTCSE
T ss_pred -CCHHHHHHHHHHcCCeE
Confidence 89999999999999983
No 9
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=9.6e-39 Score=275.33 Aligned_cols=231 Identities=22% Similarity=0.302 Sum_probs=187.0
Q ss_pred hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~ 93 (251)
++.++|.++++++|+++|+++ .++++||+||.++++++|.+|.++|+++||+|+++++|+++++++++||+++|++++|
T Consensus 2 ~l~~~l~~~a~~~p~~~A~~~-~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 2 KLLEQIEKWAAETPDQTAFVW-RDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CHHHHHHHHHHHSTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred cHHHHHHHHHHHCCCceEEEe-CCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 688999999999999999985 6778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCC
Q psy4550 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTT 173 (251)
Q Consensus 94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 173 (251)
++|..+.+++.++++.+++++++++....... ........+.....................++++++|+||||||
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT 156 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVTD----LPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGST 156 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSSC----CSSEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC--
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCcccccc----cccceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCC
Confidence 99999999999999999999999985432211 11111111111111111111111223345678999999999999
Q ss_pred CCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 174 GKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 174 G~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
|.||||++||+++.+.+......+++.++|++++.+|+ ...++.++..|+++++.+....++|..+++.++++++
T Consensus 157 G~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~ 236 (512)
T 3fce_A 157 GNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDI 236 (512)
T ss_dssp --CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCC
T ss_pred CCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999876544 3467889999999999987555799999999999998
Q ss_pred C
Q psy4550 249 N 249 (251)
Q Consensus 249 t 249 (251)
|
T Consensus 237 t 237 (512)
T 3fce_A 237 Q 237 (512)
T ss_dssp C
T ss_pred c
Confidence 7
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2e-38 Score=275.15 Aligned_cols=233 Identities=21% Similarity=0.257 Sum_probs=188.7
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
..++.++|.+.++++|+++|+++ +++.+||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+++|+++
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIIC-GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEc-CCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 45789999999999999999985 67899999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchh--------hhhhcc--CCCeee-ecch-----hhhhhhhhhhcccCCCC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYM--------DRLERT--SVPKVK-LEND-----FLSKMISENEKLHNVDF 155 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~~--~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~ 155 (251)
+|+++..+.+++.+++++++++++|+++... +.+... ....+. .... +...... ........
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 185 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIET--PAETFVDF 185 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHS--CCSSCCCC
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhc--cccccccc
Confidence 9999999999999999999999999987643 111111 111111 1111 1111111 11111222
Q ss_pred CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH--HH-----HHHHhhhcCccEEEe
Q psy4550 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF--VW-----EMLRPLTQGIPMYVI 228 (251)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~l~~G~~~v~~ 228 (251)
....++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|+ .+ .++.++..|+++++.
T Consensus 186 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 186 SSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred ccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 45567899999999999999999999999999999999999999999998876542 21 478899999999999
Q ss_pred cCccccCchHHHhhhhccccCC
Q psy4550 229 SDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+. +++..+++.|+++++|.
T Consensus 266 ~~---~~~~~~~~~i~~~~~t~ 284 (544)
T 3o83_A 266 PN---PEPLNCFSIIQRHQVNM 284 (544)
T ss_dssp SS---CCHHHHHHHHHHHTCCE
T ss_pred CC---CCHHHHHHHHHHHCCCE
Confidence 97 89999999999999983
No 11
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.3e-38 Score=275.21 Aligned_cols=230 Identities=26% Similarity=0.420 Sum_probs=188.1
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
+...++.++|.+.++++|+++|+++ .++++||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 150 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLH-EADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGG 150 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CccCCHHHHHHHHHHHCCCCeEEEC-CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCC
Confidence 3456899999999999999999985 677899999999999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEec
Q psy4550 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYS 169 (251)
Q Consensus 90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T 169 (251)
+++|++|..+.+++.+++++++++++|++++..+.+... ..+....... .............++++++|+||
T Consensus 151 ~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~d~a~i~~T 222 (570)
T 4gr5_A 151 GYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT--TTLYVEDEAA------SDAPAGNLATGVGPEDVACVMFT 222 (570)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS--EEEECCC-------------CCCCCCCCCTTSEEEEECC
T ss_pred EEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC--cceeeecccc------ccccccccCCCCCCCCeEEEEEC
Confidence 999999999999999999999999999998765544321 1111111100 00111122344678999999999
Q ss_pred cCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550 170 SGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV 244 (251)
Q Consensus 170 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~ 244 (251)
|||||.||||+++|+++.+.+.. ...+++.++|++++.+|+ .+.++.++..|+++++.+.. .++|..+++.|+
T Consensus 223 SGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~~~i~ 300 (570)
T 4gr5_A 223 SGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQ-NPDPLEIGELVA 300 (570)
T ss_dssp SSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSS-SCCHHHHHHHHH
T ss_pred CcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCc-cCCHHHHHHHHH
Confidence 99999999999999999876654 455678889998775543 34678899999999998742 479999999999
Q ss_pred ccccCC
Q psy4550 245 RLPLNG 250 (251)
Q Consensus 245 ~~~vt~ 250 (251)
++++|.
T Consensus 301 ~~~vt~ 306 (570)
T 4gr5_A 301 RHGVTM 306 (570)
T ss_dssp HHTCCE
T ss_pred HcCCcE
Confidence 999983
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=6e-38 Score=271.98 Aligned_cols=234 Identities=18% Similarity=0.143 Sum_probs=186.4
Q ss_pred hhhHHHHHHHHHHhCCCceEEEe---cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVD---HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~---~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
..++.++|.+.++++|+++|+++ .+++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 45899999999999999999984 345789999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeee-ecchh----hhhhhhhhhcccCCCCCCC
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVK-LENDF----LSKMISENEKLHNVDFPQV 158 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~ 158 (251)
++++|++|.++.+++.+++++++++++|++++..+.+... ....+. ..... .......... ......
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 173 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEE---ADPVRV 173 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSC---CCCCCC
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhcc---CCcccC
Confidence 9999999999999999999999999999998765544321 111121 11100 0000000000 111345
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHH--HHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCc
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW--RHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDE 231 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~ 231 (251)
.++++++|+|||||||.||||++||+++...... ....++++++|++++.+|++ ..++.++..|+++++.+.
T Consensus 174 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~- 252 (541)
T 1v25_A 174 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP- 252 (541)
T ss_dssp CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT-
T ss_pred CCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC-
Confidence 6789999999999999999999999999877665 23456788899988765432 245788999999999875
Q ss_pred cccCchHHHhhhhccccCC
Q psy4550 232 VIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~vt~ 250 (251)
.++|..+++.|+++++|.
T Consensus 253 -~~~~~~~~~~i~~~~~t~ 270 (541)
T 1v25_A 253 -RLDPASLVELFDGEGVTF 270 (541)
T ss_dssp -CCSHHHHHHHHHHTTCCE
T ss_pred -CCCHHHHHHHHHhcCeeE
Confidence 379999999999999983
No 13
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.6e-38 Score=278.29 Aligned_cols=239 Identities=18% Similarity=0.258 Sum_probs=191.7
Q ss_pred CchhhhHHHHHHHHHHhCCCceEEEecC---CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550 9 YDAEGALHYMFRNQAKRTPDKIAVVDHD---GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH 85 (251)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~---~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~ 85 (251)
.+...++.++|.+.++++|+++|+++.+ ++++||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~ 86 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCL 86 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence 4566799999999999999999997533 4789999999999999999999999999999999999999999999999
Q ss_pred HHCCeEeeCCCCC---CHHHHHHHHhhcCccEEEEccchhhhhhccC---CCeee-ecchhhhhhhhhhhcccCCCCCCC
Q psy4550 86 KAGGGYLPLETSY---PPALLESVLDDAKPSIVITKGEYMDRLERTS---VPKVK-LENDFLSKMISENEKLHNVDFPQV 158 (251)
Q Consensus 86 ~~G~~~v~i~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
++|++++|++|.. +.+++.++++.+++++++++.+..+.+.... .+... ............ ..........
T Consensus 87 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 164 (590)
T 3kxw_A 87 YAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELN--RSSSWQPTSI 164 (590)
T ss_dssp HTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGGCCGG--GGGGCCCCCC
T ss_pred HhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechhcccc--ccccCCCCCC
Confidence 9999999999988 4578999999999999999988766554321 11000 000000001000 1111233456
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCc-
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDE- 231 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~- 231 (251)
.++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++| .++.++..|+++++.++.
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 244 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFS 244 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHH
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHH
Confidence 7899999999999999999999999999999999999999999999988665422 267789999999998861
Q ss_pred cccCchHHHhhhhccccC
Q psy4550 232 VIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~vt 249 (251)
...+|..+++.|+++++|
T Consensus 245 ~~~~~~~~~~~i~~~~~t 262 (590)
T 3kxw_A 245 FLQNPLSWLKHITKYKAT 262 (590)
T ss_dssp HHHCTHHHHHHHHHHTCS
T ss_pred HHHCHHHHHHHHHHhCCe
Confidence 111899999999999998
No 14
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.6e-38 Score=271.91 Aligned_cols=231 Identities=22% Similarity=0.273 Sum_probs=181.2
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecC------C--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHH
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHD------G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~------~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a 83 (251)
..++.++|.+.++++|+++|+++.+ + +++||+||.++++++|++|+++|+ +||+|+++++|+++++++++|
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 4589999999999999999998633 2 689999999999999999999996 999999999999999999999
Q ss_pred HHHHCCeEeeCCC---CCCHHHHHHHHhhcCccEEEEccchhhhhhccCCC-------eeeecchhhhhhhhhhhcccCC
Q psy4550 84 IHKAGGGYLPLET---SYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP-------KVKLENDFLSKMISENEKLHNV 153 (251)
Q Consensus 84 ~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 153 (251)
|+++|++++|+++ ..+.+++.+++++++++++|++++..+.+...... .+...+. .. .......
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~ 175 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL----LD--LDAPNGY 175 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG----SC--TTCC---
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc----cc--cccccCC
Confidence 9999999999999 77899999999999999999998876655432111 1111100 00 0011112
Q ss_pred CCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCC------CChhhhhHHH------HHHHHHhhhc
Q psy4550 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDE------DDREACNVFF------VWEMLRPLTQ 221 (251)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~------~~~~~~~l~~ 221 (251)
......++++++|+|||||||.||||++||+++.+++......+++.. +|++++++|+ ...++.++..
T Consensus 176 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~ 255 (480)
T 3t5a_A 176 TFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILG 255 (480)
T ss_dssp CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHH
T ss_pred CCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHc
Confidence 334566789999999999999999999999999999988888888777 8888776644 3456889999
Q ss_pred CccEEEecC-ccccCchHHHhhhhccccC
Q psy4550 222 GIPMYVISD-EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 222 G~~~v~~~~-~~~~~~~~~~~~i~~~~vt 249 (251)
|+++++.++ ...++|..+++.|+++++|
T Consensus 256 G~~~v~~~~~~~~~~~~~~~~~i~~~~~t 284 (480)
T 3t5a_A 256 GYPAVLTSPVSFLQRPARWMHLMASDFHA 284 (480)
T ss_dssp TCCEEECCHHHHHHCTHHHHHHTTSSSEE
T ss_pred CCceEEECHHHHHHCHHHHHHHHHhhcee
Confidence 999999885 1114999999999999986
No 15
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.4e-37 Score=267.12 Aligned_cols=231 Identities=21% Similarity=0.321 Sum_probs=186.7
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
+.++.++|.+.++++|+++|+. ..++++||+||.++++++|.+|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~-~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYD-CLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEE-ETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHCCCCccee-cCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 3589999999999999999997 477889999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSG 171 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 171 (251)
+|++|..+.+++.++++.++++++|++++........ ..+.. .... ................++++++|+||||
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~--~~~~~-~~~~---~~~~~~~~~~~~~~~~~~d~a~i~~TSG 155 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI--SLVSL-SEIE---SAKLAEMPYERTHSVKGDDNYYIIFTSG 155 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS--EEEEH-HHHH---HHHHHTCCCCCSSCCCTTSEEEEEECCC
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccccccC--cccch-hhhh---hcccccCCcccCCCCCCCCcEEEEEcCC
Confidence 9999999999999999999999999988765433211 11111 1111 1111111122334567899999999999
Q ss_pred CCCCCceEEeccHHHHHHHHHHHHh--CCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550 172 TTGKPKGIVCPHRGAVHAYKWRHRA--YPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV 244 (251)
Q Consensus 172 tTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~ 244 (251)
|||.||||++||+++.+.+...... +++..++++++..++ ...++.++..|+++++.+.....++..+++.++
T Consensus 156 TTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~ 235 (521)
T 3l8c_A 156 TTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIA 235 (521)
T ss_dssp ---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHH
T ss_pred CCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHH
Confidence 9999999999999999888777665 677888888765543 345778899999999998755569999999999
Q ss_pred ccccC
Q psy4550 245 RLPLN 249 (251)
Q Consensus 245 ~~~vt 249 (251)
++++|
T Consensus 236 ~~~~t 240 (521)
T 3l8c_A 236 QLPVG 240 (521)
T ss_dssp HSCCS
T ss_pred HcCCc
Confidence 99987
No 16
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.4e-37 Score=270.13 Aligned_cols=236 Identities=18% Similarity=0.212 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHhCCCceEEE---e-cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVV---D-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~---~-~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~ 87 (251)
..++.++|.+.++++|+++|++ + ..++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 4689999999999999998865 4 34678999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeeee-cc--------hhhhhhhhhhhcc---
Q psy4550 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVKL-EN--------DFLSKMISENEKL--- 150 (251)
Q Consensus 88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~-~~--------~~~~~~~~~~~~~--- 150 (251)
|++++|++|..+.+++.++++.++++++|++++..+.+... ....+.. .. .+...........
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNE 178 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCT
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccccccccc
Confidence 99999999999999999999999999999998876554322 1111111 11 0111111111100
Q ss_pred -cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh---CCCCCCChhhhhHHH-----HHHHHHhhhc
Q psy4550 151 -HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA---YPYDEDDREACNVFF-----VWEMLRPLTQ 221 (251)
Q Consensus 151 -~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~l~~ 221 (251)
.........++++++|+|||||||.||||+++|+++...+...... +++.+++++++.+|+ .+.++.++..
T Consensus 179 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~ 258 (550)
T 3rix_A 179 YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 258 (550)
T ss_dssp TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHc
Confidence 0011122345789999999999999999999999999887766654 467888988775543 3456788999
Q ss_pred CccEEEecCccccCchHHHhhhhccccCC
Q psy4550 222 GIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 222 G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
|+++++.+. +++..+++.|+++++|.
T Consensus 259 G~~~~~~~~---~~~~~~~~~i~~~~~t~ 284 (550)
T 3rix_A 259 GFRVVLMYR---FEEELFLRSLQDYKIQS 284 (550)
T ss_dssp TCEEEECSS---CCHHHHHHHHHHTTCSE
T ss_pred CCEEEEeCC---CCHHHHHHHHHHcCCeE
Confidence 999999987 99999999999999983
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.4e-37 Score=266.58 Aligned_cols=230 Identities=19% Similarity=0.257 Sum_probs=189.0
Q ss_pred hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
++.++|.++++++|+++|+++ +++++||+||.++++++|.+|++. |.++|++|+++++|+++++++++||+++|++++
T Consensus 2 ~l~~~l~~~a~~~p~~~Al~~-~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 2 KLLHAIQTHAETYPQTDAFRS-QGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CHHHHHHHHHHHSTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHHHHHCCCCeEEEc-CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 688999999999999999985 778999999999999999999885 888999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCC
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGT 172 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 172 (251)
|++|.++.+++.+++++++++++|+++.............+.. ........ ..........++++++|+|||||
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGT 154 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSA----EELLENEG--GSVSQDQWVKEHETFYIIYTSGS 154 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEEEH----HHHHTSCS--CCCCGGGSCCTTSEEEEEEECCT
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccchhcccccceecH----hhhhcccc--CCccccccCCCCCeEEEEECCCC
Confidence 9999999999999999999999999765432211111111111 11111100 01112233567899999999999
Q ss_pred CCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhccc
Q psy4550 173 TGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLP 247 (251)
Q Consensus 173 TG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~ 247 (251)
||.||||++||+++.+.+......+++.++|++++.+|+ ...++.++..|+++++.+....++|..+++.+++++
T Consensus 155 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~ 234 (511)
T 3e7w_A 155 TGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSG 234 (511)
T ss_dssp TSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHC
T ss_pred CCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcC
Confidence 999999999999999999999999999999998875543 446788999999999998755579999999999999
Q ss_pred cCC
Q psy4550 248 LNG 250 (251)
Q Consensus 248 vt~ 250 (251)
+|.
T Consensus 235 ~t~ 237 (511)
T 3e7w_A 235 LNV 237 (511)
T ss_dssp CSE
T ss_pred CcE
Confidence 973
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.1e-37 Score=272.44 Aligned_cols=234 Identities=21% Similarity=0.219 Sum_probs=188.2
Q ss_pred hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
...++.++|.++++ |+++|+++ +++++||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~ 101 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVID-GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA 101 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CcCCHHHHHHHhhC--CCCeEEec-CCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence 34688999999887 99999985 6778999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhcCccEEEEccchhh--------hhh-c-cCCCeeeecchh-h-hhhhhhhhcccCCCCCCC
Q psy4550 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMD--------RLE-R-TSVPKVKLENDF-L-SKMISENEKLHNVDFPQV 158 (251)
Q Consensus 91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~-~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 158 (251)
++|++|..+.+++.++++++++++++++..... ... . .....+...... . ..................
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (617)
T 3rg2_A 102 PVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPS 181 (617)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCSSCCCCCC
T ss_pred EccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhcccccccCCCCC
Confidence 999999999999999999999999999876431 110 0 011111111110 0 000001111111233455
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH--H-----HHHHHhhhcCccEEEecCc
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF--V-----WEMLRPLTQGIPMYVISDE 231 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~l~~G~~~v~~~~~ 231 (251)
.++++++|+|||||||.||||+++|+++.+.+......+++.+++++++.+|+ . .+++.++..|+++++.+.
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~- 260 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD- 260 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-
Confidence 67899999999999999999999999999999999999999999998876542 1 257889999999999987
Q ss_pred cccCchHHHhhhhccccCC
Q psy4550 232 VIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 232 ~~~~~~~~~~~i~~~~vt~ 250 (251)
+++..+++.++++++|.
T Consensus 261 --~~~~~~~~~i~~~~~t~ 277 (617)
T 3rg2_A 261 --PSATLCFPLIEKHQVNV 277 (617)
T ss_dssp --CCHHHHHHHHHHTTCCE
T ss_pred --CCHHHHHHHHHHhCCcE
Confidence 89999999999999973
No 19
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=5.2e-37 Score=266.42 Aligned_cols=235 Identities=20% Similarity=0.272 Sum_probs=185.2
Q ss_pred CchhhhHHH-HHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550 9 YDAEGALHY-MFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (251)
Q Consensus 9 ~~~~~~l~~-~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~ 86 (251)
.|.+.++.+ ++.+.++++ +++|+++. +++.+||+||.++++++|+.|++.|+++||+|+++++|+++++++++||++
T Consensus 21 ~p~~~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 21 EEGSAGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp CSSCHHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred CCCcCcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 445568999 899999999 99999863 568899999999999999999999999999999999999999999999999
Q ss_pred HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc------CCCeeeecch-------hhhhhhhhhhcccCC
Q psy4550 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT------SVPKVKLEND-------FLSKMISENEKLHNV 153 (251)
Q Consensus 87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~~~~~~ 153 (251)
+|++++|++|.++.+++.+++++++++++|++++..+.+... ....+..... .+.......... ..
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 178 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPP-GF 178 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCT-TC
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccc-cC
Confidence 999999999999999999999999999999998766554321 1111211111 011111111000 00
Q ss_pred CCCCC------CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh---CCCCCCChhhhhHHHH-----H-HHHHh
Q psy4550 154 DFPQV------GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA---YPYDEDDREACNVFFV-----W-EMLRP 218 (251)
Q Consensus 154 ~~~~~------~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~-~~~~~ 218 (251)
..... .++++++|+|||||||.||||++||+++...+...... +++.++|++++.+|++ . .++.+
T Consensus 179 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 258 (548)
T 2d1s_A 179 QASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYL 258 (548)
T ss_dssp CGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred CcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 10111 23899999999999999999999999999988877666 6788899987755432 2 24556
Q ss_pred hhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550 219 LTQGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 219 l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
+ .|+++++.+. +++..+++.|+++++|
T Consensus 259 l-~G~~~v~~~~---~~~~~~~~~i~~~~~t 285 (548)
T 2d1s_A 259 I-CGFRVVMLTK---FDEETFLKTLQDYKCT 285 (548)
T ss_dssp H-TTCEEEECCC---CCHHHHHHHHHHTTEE
T ss_pred h-cCcEEEEcCC---CCHHHHHHHHHHcCCc
Confidence 6 9999999987 9999999999999987
No 20
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=3.3e-37 Score=283.65 Aligned_cols=240 Identities=20% Similarity=0.316 Sum_probs=192.8
Q ss_pred cCchhhhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550 8 DYDAEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (251)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~ 86 (251)
..|...++.++|.+.++++|+++|+++. +++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||++
T Consensus 56 ~~p~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~ 135 (979)
T 3tsy_A 56 YIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASF 135 (979)
T ss_dssp CCCTTSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 3455679999999999999999999874 368899999999999999999999999999999999999999999999999
Q ss_pred HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecch-----------hhhhhhhhhhccc
Q psy4550 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEND-----------FLSKMISENEKLH 151 (251)
Q Consensus 87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~ 151 (251)
+|++++|++|.++.+++.+++++++++++|++++..+.+... ....+..... +............
T Consensus 136 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (979)
T 3tsy_A 136 RGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASE 215 (979)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGGGTSSCCSGGGG
T ss_pred cCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHHHHhhccccccc
Confidence 999999999999999999999999999999998776554332 1111211110 0000100011111
Q ss_pred CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH----hCCCCCCChhhhhHHHH------HHHHHhhhc
Q psy4550 152 NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR----AYPYDEDDREACNVFFV------WEMLRPLTQ 221 (251)
Q Consensus 152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~l~~ 221 (251)
........++++++|+|||||||.||||+++|+++.+.+..... .+++.++|++++.+|++ ..++.++..
T Consensus 216 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~ 295 (979)
T 3tsy_A 216 VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRV 295 (979)
T ss_dssp GSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHH
T ss_pred cCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhc
Confidence 12334567899999999999999999999999999988776654 45678889887755432 345778999
Q ss_pred CccEEEecCccccCchHHHhhhhccccCC
Q psy4550 222 GIPMYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 222 G~~~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
|+++++.++ +++..+++.|+++++|.
T Consensus 296 G~~~v~~~~---~~~~~~~~~i~~~~~t~ 321 (979)
T 3tsy_A 296 GAAILIMPK---FEINLLLELIQRCKVTV 321 (979)
T ss_dssp TCEEEECSS---CCHHHHHHHHHHHTCCE
T ss_pred CcEEEEeCC---CCHHHHHHHHHHhCCeE
Confidence 999999987 99999999999999983
No 21
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.6e-37 Score=265.76 Aligned_cols=230 Identities=17% Similarity=0.207 Sum_probs=183.3
Q ss_pred hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (251)
Q Consensus 14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~ 93 (251)
++.++|.++++++|+++|+++ .++++||+||.++++++|.+|+++ +||+|+++++|+++++++++||+++|++++|
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITD-GQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEEC-SSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHhcCCceEEEe-CCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 567889999999999999985 678999999999999999999987 8999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeec---ch---------hhhhhhh--hhhcccCCCC
Q psy4550 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLE---ND---------FLSKMIS--ENEKLHNVDF 155 (251)
Q Consensus 94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~---~~---------~~~~~~~--~~~~~~~~~~ 155 (251)
+++.++.+++.++++.++++++|++++......... ...+... .. +...... ..........
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILN 157 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHHTC
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcccccc
Confidence 999999999999999999999999877654332110 0000000 00 0000000 0000000122
Q ss_pred CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecC
Q psy4550 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISD 230 (251)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~ 230 (251)
....++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|+ ...++.++..|+++++.+.
T Consensus 158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 237 (501)
T 3ipl_A 158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237 (501)
T ss_dssp CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence 34567899999999999999999999999999999999999999999998775543 3346889999999999987
Q ss_pred ccccCchHHHhhhhccccCC
Q psy4550 231 EVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 231 ~~~~~~~~~~~~i~~~~vt~ 250 (251)
+++..+++.|+++++|.
T Consensus 238 ---~~~~~~~~~i~~~~~t~ 254 (501)
T 3ipl_A 238 ---FNAEQILTMIKNERITH 254 (501)
T ss_dssp ---CCHHHHHHHHHHSCCCE
T ss_pred ---CCHHHHHHHHHHcCCcE
Confidence 99999999999999983
No 22
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=8.6e-37 Score=266.49 Aligned_cols=238 Identities=14% Similarity=0.183 Sum_probs=185.6
Q ss_pred hhhHHHHHHHHHHhCCCceEEEec----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDH----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~ 87 (251)
++...++|.++++++|+++|+++. +++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~ 134 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL 134 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 445669999999999999999852 2368999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh--hhhhcc----C---CCeeeecc-------hhhhhhhhhhhccc
Q psy4550 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM--DRLERT----S---VPKVKLEN-------DFLSKMISENEKLH 151 (251)
Q Consensus 88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~----~---~~~~~~~~-------~~~~~~~~~~~~~~ 151 (251)
|++++|++|.++.+++.+++++++++++|++.+.. +.+... . ...+.... ++............
T Consensus 135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (580)
T 3etc_A 135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE 214 (580)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCC
T ss_pred CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCcccc
Confidence 99999999999999999999999999999987643 322211 1 11222211 11111111111000
Q ss_pred -CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhhcCcc
Q psy4550 152 -NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLTQGIP 224 (251)
Q Consensus 152 -~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~ 224 (251)
........++++++|+|||||||.||||+++|.++...+.......++.+++++++..++ +..++.++..|++
T Consensus 215 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 294 (580)
T 3etc_A 215 RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA 294 (580)
T ss_dssp CCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred cCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence 000124577999999999999999999999999999888777777888899988764432 2246778999999
Q ss_pred EEEecCccccCchHHHhhhhccccCC
Q psy4550 225 MYVISDEVIYDPPRLTSGWVRLPLNG 250 (251)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~i~~~~vt~ 250 (251)
+++.+. ..+++..+++.|+++++|.
T Consensus 295 ~~~~~~-~~~~~~~~~~~i~~~~vt~ 319 (580)
T 3etc_A 295 VFVYDY-DRFEAKNMLEKASKYGVTT 319 (580)
T ss_dssp EEEEEC-SSCCHHHHHHHHHHHTCCE
T ss_pred EEEecC-CCCCHHHHHHHHHHHCCeE
Confidence 988852 1489999999999999983
No 23
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=6.6e-37 Score=263.25 Aligned_cols=225 Identities=24% Similarity=0.317 Sum_probs=180.1
Q ss_pred HHHHHHHHhCCCceEEE--ecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC
Q psy4550 17 YMFRNQAKRTPDKIAVV--DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL 94 (251)
Q Consensus 17 ~~l~~~~~~~~~~~a~~--~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i 94 (251)
++|.+.++++|+++++. +.+++++||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 46778889999998876 3577899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecchhhhhh-hhhhhcccCCCCCCCCCCCeEEEEec
Q psy4550 95 ETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLENDFLSKM-ISENEKLHNVDFPQVGLDDIAYIVYS 169 (251)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~T 169 (251)
+|..+.+++.+++++++++++|++++..+.+... ............... ................++++++|+||
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T 163 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYT 163 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEEEEEEC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeEEEEEC
Confidence 9999999999999999999999998765543321 111111111100000 00111111123345677999999999
Q ss_pred cCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCccccCchHHHhhh
Q psy4550 170 SGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEVIYDPPRLTSGW 243 (251)
Q Consensus 170 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i 243 (251)
|||||.||||+++|+++.+.+......+++.++|++++.+|++| .++.++..|+++++.+. ++|..+++.+
T Consensus 164 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~i 240 (503)
T 4fuq_A 164 SGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPK---FDPDKILDLM 240 (503)
T ss_dssp C--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSS---CCHHHHHHHH
T ss_pred CCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCC---CCHHHHHHHH
Confidence 99999999999999999999999999999999999988766532 35678999999999997 9999999999
Q ss_pred h
Q psy4550 244 V 244 (251)
Q Consensus 244 ~ 244 (251)
+
T Consensus 241 ~ 241 (503)
T 4fuq_A 241 A 241 (503)
T ss_dssp T
T ss_pred h
Confidence 8
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=7.1e-37 Score=264.65 Aligned_cols=232 Identities=21% Similarity=0.265 Sum_probs=179.5
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~ 91 (251)
++++.++|.+.++ +|+++|+++ +++++||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|+++
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 100 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYID-DTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEEC-SSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEe-CCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceE
Confidence 4568999999998 999999985 56889999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CC-Ceeee-cch--------hhhhhhhhhhcccCCCCC
Q psy4550 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SV-PKVKL-END--------FLSKMISENEKLHNVDFP 156 (251)
Q Consensus 92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~-~~~--------~~~~~~~~~~~~~~~~~~ 156 (251)
+|+++.++.+++.+++++++++++|++++..+.+... .. ..+.. ... .+...... ........
T Consensus 101 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 178 (529)
T 2v7b_A 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDA--AAPAAKAA 178 (529)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHT--SCCCSSCC
T ss_pred EecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhcc--CCCccccc
Confidence 9999999999999999999999999998765544321 11 11211 110 11111110 11112233
Q ss_pred CCCCCCeEEEEeccCCCCCCceEEeccHHH-HHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEec
Q psy4550 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGA-VHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVIS 229 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~ 229 (251)
...++++++|+|||||||.||||+++|+++ ..........+++.++|++++.+|++ ..++.++..|+++++.+
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 258 (529)
T 2v7b_A 179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMA 258 (529)
T ss_dssp CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCC
T ss_pred CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEec
Confidence 456789999999999999999999999999 56655555567888999987755432 23567899999999885
Q ss_pred CccccCchHHHhhhhccccC
Q psy4550 230 DEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 230 ~~~~~~~~~~~~~i~~~~vt 249 (251)
. .+++..+++.|+++++|
T Consensus 259 ~--~~~~~~~~~~i~~~~~t 276 (529)
T 2v7b_A 259 E--RPTADAIFARLVEHRPT 276 (529)
T ss_dssp S--CCCHHHHHHHHHHSCCS
T ss_pred C--CCCHHHHHHHHHHhCCE
Confidence 3 38999999999999997
No 25
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.6e-36 Score=268.13 Aligned_cols=235 Identities=18% Similarity=0.285 Sum_probs=184.1
Q ss_pred hhHHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~ 87 (251)
+++.++|.++++++|+++|+++. +++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 155 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 155 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 56888999999999999999852 2367999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hh----hcc---CCCe-eeecch------------
Q psy4550 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RL----ERT---SVPK-VKLEND------------ 138 (251)
Q Consensus 88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~----~~~---~~~~-~~~~~~------------ 138 (251)
|++++|+++.++.+++.+++++++++++|+++.... .+ ... .... +.+...
T Consensus 156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 235 (652)
T 1pg4_A 156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL 235 (652)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEE
T ss_pred CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCce
Confidence 999999999999999999999999999999876422 11 111 1111 111100
Q ss_pred hhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHH-HHHHHhCCCCCCChhhhhHHH------
Q psy4550 139 FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY-KWRHRAYPYDEDDREACNVFF------ 211 (251)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------ 211 (251)
.+...... ...........++++++|+|||||||.||||+++|++++..+ ......+++.++|++++..++
T Consensus 236 ~~~~~~~~--~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~ 313 (652)
T 1pg4_A 236 WWRDLIEK--ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGH 313 (652)
T ss_dssp EHHHHHTT--SCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred eHHHHHhh--cCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeech
Confidence 01111111 011122334567899999999999999999999999988765 445667899999998775432
Q ss_pred HHHHHHhhhcCccEEEecCc-cccCchHHHhhhhccccC
Q psy4550 212 VWEMLRPLTQGIPMYVISDE-VIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 212 ~~~~~~~l~~G~~~v~~~~~-~~~~~~~~~~~i~~~~vt 249 (251)
.+.++.++..|+++++.+.. ..++|..+++.|++++||
T Consensus 314 ~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt 352 (652)
T 1pg4_A 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352 (652)
T ss_dssp HHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCe
Confidence 24568899999999998752 236899999999999998
No 26
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2e-36 Score=285.00 Aligned_cols=229 Identities=23% Similarity=0.401 Sum_probs=190.4
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v 92 (251)
.++.++|.+.++++|+++|+++ .++++||+||.++++++|+.|+++|+++|++|+|+++|+++++++++||+++|++++
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~v 542 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTY-SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYL 542 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEES-SSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEE-CCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEE
Confidence 6899999999999999999984 678899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC--CeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEecc
Q psy4550 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV--PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSS 170 (251)
Q Consensus 93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS 170 (251)
|++|..+.+++.++++++++++++++++..+....... ..+...... . . ............+++++||+|||
T Consensus 543 pldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~~~~~~~~ayiiyTS 616 (1304)
T 2vsq_A 543 PVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQT-R----F-EEQASDPATAIDPNDPAYIMYTS 616 (1304)
T ss_dssp ECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGG-G----G-GSCSSCCCCCCCTTSEEEEEEEC
T ss_pred EECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEecccc-c----c-ccccCCCCCCCCCCCeEEEEeCC
Confidence 99999999999999999999999999876655432211 111111111 0 0 01111223345788999999999
Q ss_pred CCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH-----HHHHHHHhhhcCccEEEecCccccCchHHHhhhhc
Q psy4550 171 GTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF-----FVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVR 245 (251)
Q Consensus 171 GtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~ 245 (251)
||||+||||+++|+++.+. ......+++.++|+++...+ ..+.++.++..|+++++.+....++|..+++.|++
T Consensus 617 GSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~ 695 (1304)
T 2vsq_A 617 GTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQ 695 (1304)
T ss_dssp CSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHH
T ss_pred CCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHH
Confidence 9999999999999999865 44456678888998876543 35678999999999999997777899999999999
Q ss_pred cccC
Q psy4550 246 LPLN 249 (251)
Q Consensus 246 ~~vt 249 (251)
++||
T Consensus 696 ~~vt 699 (1304)
T 2vsq_A 696 ENVN 699 (1304)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 9998
No 27
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5e-36 Score=265.26 Aligned_cols=234 Identities=22% Similarity=0.247 Sum_probs=184.3
Q ss_pred hhHHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~-~~g~~~g~~V~l~~~~~~~~~~~~~a~~~ 86 (251)
+++.++|.++++++|+++|+++. +++++||+||.++++++|+.|+ ++|+++||+|+++++|+++++++++||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57889999999999999999852 3468999999999999999999 99999999999999999999999999999
Q ss_pred HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hhhcc-----CCCee-eecc--------------
Q psy4550 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RLERT-----SVPKV-KLEN-------------- 137 (251)
Q Consensus 87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~-----~~~~~-~~~~-------------- 137 (251)
+|++++|+++.++.+++.++++++++++||+++.... .+.+. ....+ ....
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 241 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL 241 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccc
Confidence 9999999999999999999999999999999876432 11110 11111 1110
Q ss_pred hhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHH-HHHHhCCCCCCChhhhhHHH-----
Q psy4550 138 DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK-WRHRAYPYDEDDREACNVFF----- 211 (251)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----- 211 (251)
.+.+... . ...........++++++|+|||||||+||||+++|++++..+. .....+++.++|++++..++
T Consensus 242 ~~~~~~~-~--~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g 318 (663)
T 1ry2_A 242 DWATEKK-K--YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITG 318 (663)
T ss_dssp EHHHHHT-T--SCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHH
T ss_pred cHHHHHh-h--cCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhh
Confidence 0111111 0 0111223345678999999999999999999999999886654 45567899999998774432
Q ss_pred -HHHHHHhhhcCccEEEecC-ccccCchHHHhhhhccccC
Q psy4550 212 -VWEMLRPLTQGIPMYVISD-EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 212 -~~~~~~~l~~G~~~v~~~~-~~~~~~~~~~~~i~~~~vt 249 (251)
.+.++.++..|+++++.+. ...+++..+++.|++++||
T Consensus 319 ~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt 358 (663)
T 1ry2_A 319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVT 358 (663)
T ss_dssp HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCS
T ss_pred hHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCC
Confidence 2456789999999999874 2236899999999999998
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=6.1e-36 Score=260.56 Aligned_cols=238 Identities=20% Similarity=0.229 Sum_probs=179.7
Q ss_pred cCchhhhHHHHHHHHHHhCCCceEEEecCC---------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHH
Q psy4550 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDG---------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78 (251)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~---------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~ 78 (251)
...+..++.++|.++++++|+++|+++.++ +++||+||.++++++|+.|.+.|+ +||+|+++++|+++++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence 344556899999999999999999986432 689999999999999999999999 7999999999999999
Q ss_pred HHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCC
Q psy4550 79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV 158 (251)
Q Consensus 79 ~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
++++||+++|++++|++|.++.+++.+++++++++++|++++..+.........+... .....................
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDT-KNQSFIENLSTQDTSDILNNY 172 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEET-TCHHHHHHHHHSCCSCCCCCC
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecc-cchhhhhhcccccccccccCC
Confidence 9999999999999999999999999999999999999998765544322111111111 111111111111111223445
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh--------CCCCCCChhhhhH-----HHHHHHHHhhhcCccE
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA--------YPYDEDDREACNV-----FFVWEMLRPLTQGIPM 225 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~~~~~~~~-----~~~~~~~~~l~~G~~~ 225 (251)
.++++++|+|||||||.||||+++|+++.+.+...... +.+...+++++.. .+...++.++..|+++
T Consensus 173 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 252 (562)
T 3ite_A 173 PENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCA 252 (562)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEE
T ss_pred CCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEE
Confidence 67889999999999999999999999999887665543 3466667776543 2345678899999999
Q ss_pred EEecCccccCchHHHhhhhccccC
Q psy4550 226 YVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 226 v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
++.+. ...+..+++.++++++|
T Consensus 253 ~~~~~--~~~~~~~~~~i~~~~~t 274 (562)
T 3ite_A 253 VTGER--LSMLDDLPRTFRELGVT 274 (562)
T ss_dssp EECCH--HHHHHSHHHHHHHTTCC
T ss_pred Eecch--hhCHHHHHHHHHHcCCC
Confidence 99876 23468899999999987
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.4e-36 Score=263.80 Aligned_cols=238 Identities=17% Similarity=0.229 Sum_probs=190.6
Q ss_pred CcCchhhhHHHHHHHHHHhCCCceEEEecC--CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH
Q psy4550 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHD--GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84 (251)
Q Consensus 7 ~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~--~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~ 84 (251)
...+...++.++|.+.++++|+.+++.+.. ++++||+||.++++++|++|+++|+++||+|+++++|+++++++++||
T Consensus 15 ~~~~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 94 (576)
T 3gqw_A 15 MRYADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFAC 94 (576)
T ss_dssp CCCSCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 345567799999999999999998885322 368999999999999999999999999999999999999999999999
Q ss_pred HHHCCeEeeCCCCCC-------HHHHHHHHhhcCccEEEEccchhhhhhccC---CCeeeecchhhhhhhhhhhcccCCC
Q psy4550 85 HKAGGGYLPLETSYP-------PALLESVLDDAKPSIVITKGEYMDRLERTS---VPKVKLENDFLSKMISENEKLHNVD 154 (251)
Q Consensus 85 ~~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
+++|++++|+++.++ .+++.++++.+++++++++++..+.+.... .........+.... ......
T Consensus 95 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 169 (576)
T 3gqw_A 95 QYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKAL-----PEADVA 169 (576)
T ss_dssp HHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHHHHHTS-----CCCCCC
T ss_pred HHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchhhhhcc-----cccccc
Confidence 999999999999998 899999999999999999988765543321 11111111111111 111122
Q ss_pred CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh-CCCCCCChhhhhHHHH------HHHHHhhhcCccEEE
Q psy4550 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA-YPYDEDDREACNVFFV------WEMLRPLTQGIPMYV 227 (251)
Q Consensus 155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~ 227 (251)
.....++++++|+|||||||.||||+++|+++..++...... +++.++|++++++|++ ..++.++..|+++++
T Consensus 170 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~ 249 (576)
T 3gqw_A 170 LQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDY 249 (576)
T ss_dssp CCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEE
T ss_pred cCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEE
Confidence 334567899999999999999999999999999988877665 7899999998766442 235667889999988
Q ss_pred ecC-ccccCchHHHhhhhccccC
Q psy4550 228 ISD-EVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 228 ~~~-~~~~~~~~~~~~i~~~~vt 249 (251)
.+. ...++|..+++.|+++++|
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~t 272 (576)
T 3gqw_A 250 LRTQDFAMRPLQWLKLISKNRGT 272 (576)
T ss_dssp CCHHHHHHCTTHHHHHHHHTTCC
T ss_pred cchhHhhhCHHHHHHHHHHhCCe
Confidence 874 2236999999999999987
No 30
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=8.8e-36 Score=259.73 Aligned_cols=232 Identities=16% Similarity=0.174 Sum_probs=182.8
Q ss_pred hhhHHHHHHHHHHh-----CCCceEEEecC----CCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHH
Q psy4550 12 EGALHYMFRNQAKR-----TPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISY 81 (251)
Q Consensus 12 ~~~l~~~l~~~~~~-----~~~~~a~~~~~----~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~ 81 (251)
.+++.++|.+.+++ +|+++|+++.+ ++.+||+||.++++++|.+|++. |+++||+|+++++|++++++++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~ 116 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI 116 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence 45678999999998 99999998632 36899999999999999999998 9999999999999999999999
Q ss_pred HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCe-eeecc-------hhhhhhhhhhh
Q psy4550 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPK-VKLEN-------DFLSKMISENE 148 (251)
Q Consensus 82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~-~~~~~-------~~~~~~~~~~~ 148 (251)
+||+++|++++|++|.++.+++.+++++++++++|++++..+.+... .... +.... .+......
T Consensus 117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 193 (570)
T 3c5e_A 117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE--- 193 (570)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHH---
T ss_pred HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhc---
Confidence 99999999999999999999999999999999999998776554321 1111 12211 01111111
Q ss_pred cccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHH--HHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhh
Q psy4550 149 KLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH--AYKWRHRAYPYDEDDREACNVFF------VWEMLRPLT 220 (251)
Q Consensus 149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~ 220 (251)
...........++++++|+|||||||.||||+++|+ ++. ..... ..+++.++|++++.+++ ...++.++.
T Consensus 194 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~ 271 (570)
T 3c5e_A 194 ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWA 271 (570)
T ss_dssp SCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHH
T ss_pred ccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHH
Confidence 111112234567899999999999999999999999 544 44444 67788899998775533 224677899
Q ss_pred cCccEEEecCccccCchHHHhhhhccccC
Q psy4550 221 QGIPMYVISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 221 ~G~~~v~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.|+++++.+.. .++|..+++.|+++++|
T Consensus 272 ~G~~~~~~~~~-~~~~~~~~~~i~~~~~t 299 (570)
T 3c5e_A 272 LGACTFVHLLP-KFDPLVILKTLSSYPIK 299 (570)
T ss_dssp HTCEEEEECCS-SCCHHHHHHHHHHSCCC
T ss_pred hCceEEEecCC-CCCHHHHHHHHHHhCCe
Confidence 99999998731 48999999999999997
No 31
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3e-35 Score=253.05 Aligned_cols=220 Identities=20% Similarity=0.238 Sum_probs=173.8
Q ss_pred chhhhHHHHHHHHHHhCCC-ceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 10 DAEGALHYMFRNQAKRTPD-KIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~-~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
..+.++.+.|.+.++++|+ ++|+++ +++++||+||.++++++|..|. .|++|+++++|+++++++++||+++|
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~-~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~G 92 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRF-GERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAG 92 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEE-TTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEE-CCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 3467888999999999997 999985 7789999999999999998775 38899999999999999999999999
Q ss_pred CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEe
Q psy4550 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVY 168 (251)
Q Consensus 89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 168 (251)
++++|++|..+.+++.+++++++++++|++++............+.... ............++++++|+|
T Consensus 93 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~d~a~i~~ 162 (505)
T 3nyq_A 93 VAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDV----------RARGAVPEDGADDGDPALVVY 162 (505)
T ss_dssp CCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCT----------TCCCCCCCCCCCTTSEEEEEE
T ss_pred CEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhcccccccccc----------ccccCCCCCCCCCCCeEEEEe
Confidence 9999999999999999999999999999986521110000111111110 001112234456789999999
Q ss_pred ccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550 169 SSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVISDEVIYDPPRLTSG 242 (251)
Q Consensus 169 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 242 (251)
||||||.||||+++|+++...+......+++.++|++++.+|+ ...++.++..|+++++.+. +++..+++.
T Consensus 163 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~ 239 (505)
T 3nyq_A 163 TSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR---FSTEGAARE 239 (505)
T ss_dssp ECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSS---CCHHHHHHH
T ss_pred CCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCC---CChHHHHHH
Confidence 9999999999999999999999999999999999998875543 2246889999999999987 999999999
Q ss_pred hhccccC
Q psy4550 243 WVRLPLN 249 (251)
Q Consensus 243 i~~~~vt 249 (251)
+ ++++|
T Consensus 240 i-~~~~t 245 (505)
T 3nyq_A 240 L-NDGAT 245 (505)
T ss_dssp H-TTTCC
T ss_pred H-hhCCe
Confidence 9 77776
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.60 E-value=5.8e-16 Score=127.30 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=71.9
Q ss_pred CCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCcccc
Q psy4550 160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIY 234 (251)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~ 234 (251)
.++++||+|||||||.||||++||+++.+++......++++++|++++.+|+ +..++.++..|+++++.++ .+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~--~~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP--TA 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC--CS
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc--cc
Confidence 3689999999999999999999999999999999999999999999875543 3456788999999999875 23
Q ss_pred CchHHHhhhhccccC
Q psy4550 235 DPPRLTSGWVRLPLN 249 (251)
Q Consensus 235 ~~~~~~~~i~~~~vt 249 (251)
+ .++.|+++++|
T Consensus 114 ~---~~~~i~~~~~t 125 (358)
T 4gs5_A 114 N---PLAGLDHADFD 125 (358)
T ss_dssp C---TTTTCSSCCCS
T ss_pred c---HHHHHHHhCCe
Confidence 3 46778888887
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.48 E-value=2.8e-14 Score=120.56 Aligned_cols=90 Identities=17% Similarity=0.025 Sum_probs=74.1
Q ss_pred CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH---HhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEE
Q psy4550 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH---RAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYV 227 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~ 227 (251)
...++++++++|||||||.||+|+++|+++........ ..+++.++|++++.+++ ....+.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 44668999999999999999999999999887655443 36788999988764432 3345778899999999
Q ss_pred ecCccccCchHHHhhhhccccC
Q psy4550 228 ISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.+. +++..+++.|+++++|
T Consensus 168 ~~~---~~~~~~~~~i~~~~~t 186 (443)
T 2y4o_A 168 MSG---GQTEKQVQLIRDFEPK 186 (443)
T ss_dssp CCS---CCHHHHHHHHHHHCCS
T ss_pred CCC---CCHHHHHHHHHHhCCc
Confidence 887 7999999999999997
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.42 E-value=1.8e-13 Score=115.46 Aligned_cols=90 Identities=16% Similarity=-0.066 Sum_probs=74.1
Q ss_pred CCCC-CCeEEEEeccCCCCCCceEEeccHHHHHHHHHH---HHhCCCCCCChhhhhHH------HHHHHHHhhhcCccEE
Q psy4550 157 QVGL-DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR---HRAYPYDEDDREACNVF------FVWEMLRPLTQGIPMY 226 (251)
Q Consensus 157 ~~~~-~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~l~~G~~~v 226 (251)
...+ +++++++|||||||.||+|+++|+++...+... ...+++.++|++++.++ ....++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3445 889999999999999999999999998766554 34568899999876543 2334677899999999
Q ss_pred EecCccccCchHHHhhhhccccC
Q psy4550 227 VISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~~~vt 249 (251)
+.+. +++..+++.|+++++|
T Consensus 161 ~~~~---~~~~~~~~~i~~~~~t 180 (436)
T 3qov_A 161 PAAA---GNSKRQIKFISDFKTT 180 (436)
T ss_dssp CCCS---CCHHHHHHHHHHHTCC
T ss_pred eCCC---CCHHHHHHHHHHHCCC
Confidence 9887 8999999999999997
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.40 E-value=4.8e-13 Score=112.84 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=73.8
Q ss_pred CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH---HhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEE
Q psy4550 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH---RAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYV 227 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~ 227 (251)
...++++++++|||||||.||+|+++|+++...+.... ..+++.++|++++.+++ ...++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 44668999999999999999999999999887664433 36788899988654432 3346788999999998
Q ss_pred ecCccccCchHHHhhhhccccC
Q psy4550 228 ISDEVIYDPPRLTSGWVRLPLN 249 (251)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~vt 249 (251)
.+. +++..+++.|+++++|
T Consensus 166 ~~~---~~~~~~~~~i~~~~~t 184 (437)
T 2y27_A 166 FGG---GQTEKQVQLIQDFRPD 184 (437)
T ss_dssp CCS---CCHHHHHHHHHHHCCS
T ss_pred CCC---CCHHHHHHHHHHhCCC
Confidence 887 7999999999999997
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.35 E-value=4.1e-13 Score=110.77 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=66.8
Q ss_pred CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH---HhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEe
Q psy4550 158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH---RAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVI 228 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~ 228 (251)
..++++++|+|||||||.||+|+++|+++...+.... ...++.++|++++..++ ....+.++..|+ ++++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678899999999999999999999999998887543 55677888988765433 233455688898 6666
Q ss_pred cCccccCch-----------------------HHHhhhhccccC
Q psy4550 229 SDEVIYDPP-----------------------RLTSGWVRLPLN 249 (251)
Q Consensus 229 ~~~~~~~~~-----------------------~~~~~i~~~~vt 249 (251)
.. ++|. .+++.|+++++|
T Consensus 167 ~~---~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t 207 (369)
T 3hgu_A 167 ID---IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIR 207 (369)
T ss_dssp CC---CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEE
T ss_pred cc---CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCC
Confidence 65 7888 888899999987
No 37
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=95.85 E-value=0.089 Score=43.78 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=69.6
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|.+.+...+..++..+...|+.++|++....+- ....+...++++..|+..++.++ .+.+.+...+++.++++++
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~ 187 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIM 187 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEE
Confidence 48999999888888887888899999999998885 34445567888999999887765 4788999999999999999
Q ss_pred Eccchhhh
Q psy4550 117 TKGEYMDR 124 (251)
Q Consensus 117 ~~~~~~~~ 124 (251)
..+.....
T Consensus 188 ~~Ps~~~~ 195 (437)
T 2y27_A 188 VTPSYMLS 195 (437)
T ss_dssp ECHHHHHH
T ss_pred ECHHHHHH
Confidence 87765543
No 38
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=95.79 E-value=0.11 Score=43.41 Aligned_cols=85 Identities=15% Similarity=0.230 Sum_probs=69.8
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|.+.+...+..++..+...|+.++|++....+- ....+...++++..|+..++.++. +.+.+...+++.++++++
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~ 189 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIIL 189 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEE
Confidence 48999999888888888888899999999998885 344456678889999998887654 888999999999999999
Q ss_pred Eccchhhh
Q psy4550 117 TKGEYMDR 124 (251)
Q Consensus 117 ~~~~~~~~ 124 (251)
..+.....
T Consensus 190 ~~Ps~~~~ 197 (443)
T 2y4o_A 190 VTPSYMLN 197 (443)
T ss_dssp ECHHHHHH
T ss_pred ECHHHHHH
Confidence 87765443
No 39
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=95.65 E-value=0.12 Score=42.89 Aligned_cols=86 Identities=15% Similarity=0.073 Sum_probs=70.8
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|.+.+...+..++..+...|+.++|++....+- ....+..+++++..|+..++.++ ..++.+...+++.++++++
T Consensus 105 ~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~ 183 (436)
T 3qov_A 105 VHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALH 183 (436)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEE
T ss_pred EECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEE
Confidence 48999999988888888888899999999998874 34455677888999999887765 4778899999999999999
Q ss_pred Eccchhhhh
Q psy4550 117 TKGEYMDRL 125 (251)
Q Consensus 117 ~~~~~~~~~ 125 (251)
..+.....+
T Consensus 184 ~~P~~~~~l 192 (436)
T 3qov_A 184 AIPSYAIRL 192 (436)
T ss_dssp CCHHHHHHH
T ss_pred ECHHHHHHH
Confidence 887755443
No 40
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=93.17 E-value=1.6 Score=36.81 Aligned_cols=97 Identities=9% Similarity=0.026 Sum_probs=71.5
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~ 96 (251)
.++.+|++. ..| -.+|.+.+...+..+.. ..++.++|++...+|-. .-.+..+++.+..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 456777653 223 24899998877665543 45888999999888854 333445778889999888775
Q ss_pred CCCHHHHHHHHhhcCccEEEEccchhhhhh
Q psy4550 97 SYPPALLESVLDDAKPSIVITKGEYMDRLE 126 (251)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 126 (251)
..+++.+...+++.++++++..+.....+.
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 478999999999999999999877665543
No 41
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=92.80 E-value=1.1 Score=36.24 Aligned_cols=111 Identities=12% Similarity=-0.032 Sum_probs=70.4
Q ss_pred CCcCchhhhHHHHHHHHHHhCCCceEEEe-cC---C----CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HH
Q psy4550 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVD-HD---G----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LE 76 (251)
Q Consensus 6 ~~~~~~~~~l~~~l~~~~~~~~~~~a~~~-~~---~----~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~ 76 (251)
.|..|......+.+.++.. +.+|++- .. | -.+|.+.+...+..++. ..++.++|++...+|-. .-
T Consensus 18 ~p~~p~~~~~~~~~~~w~~---d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~ 91 (358)
T 4gs5_A 18 RPRNPYFAQAYDFMEKWLG---GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIA 91 (358)
T ss_dssp CCSSHHHHHHHHHHHHHHH---TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHH
T ss_pred CCCCCcccchhhHhhccCC---CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHH
Confidence 4445555566666666544 4445442 22 2 35999998877655543 35889999999888844 33
Q ss_pred HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 77 WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 77 ~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.+..++..+..|+..+..++... ....++..+++.+...+.....+
T Consensus 92 gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~l 137 (358)
T 4gs5_A 92 GLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSI 137 (358)
T ss_dssp HHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHh
Confidence 34556667778887776665433 23457788888888776654443
No 42
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=92.08 E-value=0.62 Score=37.63 Aligned_cols=85 Identities=8% Similarity=0.052 Sum_probs=63.5
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHH---------------
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPA--------------- 101 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~--------------- 101 (251)
.+|.+.+...+..++..+...|+.++|++..+.+- ...-....++++..|+.+++.. .++.
T Consensus 110 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~ 187 (369)
T 3hgu_A 110 VAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVR 187 (369)
T ss_dssp EECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHH
T ss_pred EECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhH
Confidence 48999998888877777778899999999999886 3333445556688898655543 3444
Q ss_pred --------HHHHHHhhcCccEEEEccchhhhh
Q psy4550 102 --------LLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 102 --------~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.+...+++.++++++..+.....+
T Consensus 188 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 188 KYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 677799999999999887765544
No 43
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=90.65 E-value=2.1 Score=36.68 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=68.8
Q ss_pred CceEEEec-CC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH--HHHHHHHHHHCCeEeeCCCC
Q psy4550 28 DKIAVVDH-DG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW--TISYIAIHKAGGGYLPLETS 97 (251)
Q Consensus 28 ~~~a~~~~-~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~--~~~~~a~~~~G~~~v~i~~~ 97 (251)
+.+|++.. .| -.+|.+.+...+......+...++.++|++...+|-.-.+ ...+++.+ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 67777632 22 3589999887766554443335788999998888855333 23356667 998888775 5
Q ss_pred CCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 98 YPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 98 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.+++.+...+++.++++++..+.....+
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l 297 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAIL 297 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 7899999999999999999887765544
No 44
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=89.85 E-value=2.5 Score=36.14 Aligned_cols=86 Identities=7% Similarity=-0.032 Sum_probs=64.5
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|.+.+..........+...++.++|++...+|-. .-.+...++.+..|+..+..+ ..+++.+...+++.++++++.
T Consensus 209 ~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~ 287 (550)
T 3rix_A 209 ALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALL 287 (550)
T ss_dssp EEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEE
T ss_pred hhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEe
Confidence 589998877665554444345788999999888854 333456677889999888764 578899999999999999998
Q ss_pred ccchhhhh
Q psy4550 118 KGEYMDRL 125 (251)
Q Consensus 118 ~~~~~~~~ 125 (251)
.+.....+
T Consensus 288 ~P~~~~~l 295 (550)
T 3rix_A 288 VPTLFSFF 295 (550)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 87665443
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=89.62 E-value=4.9 Score=34.22 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=68.8
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH--HH-HHHHHHHHCCeEeeC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW--TI-SYIAIHKAGGGYLPL 94 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~--~~-~~~a~~~~G~~~v~i 94 (251)
.++.+|++. ..| -.+|.+.+...+..... ..++.++|++...+|-.-.+ .. .+++.+..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 346666653 223 24899988777655543 34788999999888855333 22 478888999988876
Q ss_pred CCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 95 ETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
+ ..+++.+...+++.++++++..+.....+
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 286 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVW 286 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence 4 46889999999999999999887655443
No 46
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=89.46 E-value=4.4 Score=34.56 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=68.5
Q ss_pred CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH---HHHHHHHHCCeEeeCC
Q psy4550 27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI---SYIAIHKAGGGYLPLE 95 (251)
Q Consensus 27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~---~~~a~~~~G~~~v~i~ 95 (251)
++.+|++. ..| -.+|.+.+...+...+. ..++.++|++...+|-...+-. .+++.+..|+..+..+
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 46677653 223 25899998877766544 3478899999999886544432 4788888998888664
Q ss_pred CCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 96 TSYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
...+..+...++..+++.+...+.....
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 294 (544)
T 3o83_A 267 -NPEPLNCFSIIQRHQVNMASLVPSAVIM 294 (544)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHH
T ss_pred -CCCHHHHHHHHHHHCCCEEEechHHHHH
Confidence 4688889999999999999987765433
No 47
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=88.59 E-value=5 Score=33.97 Aligned_cols=82 Identities=5% Similarity=-0.040 Sum_probs=61.1
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HH-HHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TI-SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~-~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
.+|.+.+...+..++.. .++.++|++...+|-.-.+ +. .+++.+ .|+..+.. +...+..+...++..+++++.
T Consensus 189 ~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 263 (517)
T 3r44_A 189 VHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIGG 263 (517)
T ss_dssp EEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEEE
T ss_pred eeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEEE
Confidence 48999988777665544 4888999999988865333 22 244444 88888866 457899999999999999999
Q ss_pred Eccchhhhh
Q psy4550 117 TKGEYMDRL 125 (251)
Q Consensus 117 ~~~~~~~~~ 125 (251)
..+.....+
T Consensus 264 ~~P~~~~~l 272 (517)
T 3r44_A 264 AVPAILNFM 272 (517)
T ss_dssp ECHHHHHHH
T ss_pred eHHHHHHHH
Confidence 887765443
No 48
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=87.32 E-value=8.2 Score=32.49 Aligned_cols=83 Identities=10% Similarity=0.020 Sum_probs=57.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|.+.+...+..+.. ..++.++|++...+|-.-.+ +...+.+...|+..+.+. ..+++.+...++..+++++..
T Consensus 179 ~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~~~~ 254 (509)
T 3ivr_A 179 LISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-KFDPAQAARDIEAHKVTVMAE 254 (509)
T ss_dssp EEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEE
T ss_pred EEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-ccCHHHHHHHHHHHCCcEEEe
Confidence 5899998877666544 45788999999988854332 333444444444444444 678999999999999999988
Q ss_pred ccchhhhh
Q psy4550 118 KGEYMDRL 125 (251)
Q Consensus 118 ~~~~~~~~ 125 (251)
.+.....+
T Consensus 255 ~p~~~~~l 262 (509)
T 3ivr_A 255 FAPMLGNI 262 (509)
T ss_dssp ETTHHHHH
T ss_pred cHHHHHHH
Confidence 76654443
No 49
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=87.18 E-value=2.7 Score=35.48 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=69.4
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~ 96 (251)
.++.++++. ..| -.+|.+.+...+..... ..++.++|++...+|-+. -.+..+++.+..|+..+.+++
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 345666653 233 24899988876655443 457889999999988553 334567888899999887765
Q ss_pred C--CCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 97 S--YPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 97 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
. ..+..+...++..++++++..+.....
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 248 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEM 248 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHH
Confidence 3 578889999999999999988766544
No 50
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=84.62 E-value=16 Score=31.65 Aligned_cols=94 Identities=9% Similarity=0.040 Sum_probs=67.5
Q ss_pred CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH---HHHHHHHHCCeEeeCC
Q psy4550 27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI---SYIAIHKAGGGYLPLE 95 (251)
Q Consensus 27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~---~~~a~~~~G~~~v~i~ 95 (251)
++.+|++- ..| -.+|.+.+...+...... .++.++|++....+-+..+-. .+++.+..|+..+..+
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 46667653 223 358999888777655443 478899999999885543322 4788888998888765
Q ss_pred CCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 96 TSYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
. .+...+...++..+++++...+.....
T Consensus 260 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~ 287 (617)
T 3rg2_A 260 D-PSATLCFPLIEKHQVNVTALVPPAVSL 287 (617)
T ss_dssp S-CCHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCcEEEcchHHHHH
Confidence 4 578888899999999999987765443
No 51
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=84.59 E-value=5.2 Score=34.38 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=68.1
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHH--HHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT--ISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~--~~~~a~~~~G~~~v~i~ 95 (251)
.++.+|++. ..| -.+|.+.+...+..... ..++.++|++...+|-.-.+- ..+++.+..|+..+..+
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 356677653 223 24899999887766544 457889999999988664442 33788899999988776
Q ss_pred CCC---CHHHHHHHHhhcCccEEEEccchh
Q psy4550 96 TSY---PPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 96 ~~~---~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
+.. .+..+...++..+++++...+...
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~ 271 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAY 271 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHH
Confidence 532 677888999999999988766543
No 52
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=83.98 E-value=6.7 Score=33.08 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=68.8
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~ 96 (251)
.++.++++. ..| -.+|.+.+...+..+.. ..++.++|++...+|-+. -.+..+++++..|+..+..+.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 345666653 223 24899988876655543 457889999999888553 334567888999998887754
Q ss_pred C--CCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 97 S--YPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 97 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
. ..+..+...++..++++++..+.....
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 247 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHH
Confidence 3 467888999999999999987766544
No 53
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=83.72 E-value=7.2 Score=31.09 Aligned_cols=91 Identities=10% Similarity=-0.086 Sum_probs=57.6
Q ss_pred CceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH
Q psy4550 28 DKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLES 105 (251)
Q Consensus 28 ~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~ 105 (251)
.++.+...+ +.+=|++.- .+..+.....+.| +++|+.|.+....+---..+.++|...|..++.+-|...+..-..
T Consensus 35 ~~i~~K~E~~~ptGSfK~R--~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 112 (334)
T 3tbh_A 35 AKVVLKMECENPMASVKDR--LGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRC 112 (334)
T ss_dssp SEEEEEEGGGSTTSBTHHH--HHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CEEEEEeCCCCCccCcHHH--HHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence 456665322 223344432 2222223344555 488888655555566667778888888987776666656666677
Q ss_pred HHhhcCccEEEEccc
Q psy4550 106 VLDDAKPSIVITKGE 120 (251)
Q Consensus 106 ~l~~~~~~~vi~~~~ 120 (251)
.++..++++++++..
T Consensus 113 ~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 113 LLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEECCC
Confidence 889999999999754
No 54
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=82.80 E-value=0.51 Score=40.99 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCCCCCeEEEEeccCCC-CCCceEEeccHHHHH
Q psy4550 157 QVGLDDIAYIVYSSGTT-GKPKGIVCPHRGAVH 188 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 188 (251)
...++.+..+.-||||| |+||-+.+|...+-.
T Consensus 95 il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 95 ILSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SSCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred ccCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 34667788999999999 789999999998765
No 55
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=82.70 E-value=6.9 Score=32.92 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=68.3
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEccCCHHH--HHHHHHHHHHCCeEee
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGC--IVGSTVGVLMERCLEW--TISYIAIHKAGGGYLP 93 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~--~~g~~V~l~~~~~~~~--~~~~~a~~~~G~~~v~ 93 (251)
.|+.+|++- ..| -.+|.+.+...+..+.. ..++ .++|++...+|-.-.+ ...+++.+..|+..+.
T Consensus 151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 456677653 223 24899888776655433 3466 7889988888855333 2457888889998887
Q ss_pred CCCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
.+. ..+..+...+++.++++++..+.....+
T Consensus 228 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 258 (504)
T 1t5h_X 228 VEE-FRPVDALQLVQQEQVTSLFATPTHLDAL 258 (504)
T ss_dssp CSS-CCHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCeEEEeChHHHHHH
Confidence 754 6888999999999999999887665544
No 56
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=82.57 E-value=12 Score=32.15 Aligned_cols=97 Identities=7% Similarity=-0.018 Sum_probs=66.1
Q ss_pred CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHH--HHHHHHHHHCCeEeeCCC
Q psy4550 27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT--ISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~--~~~~a~~~~G~~~v~i~~ 96 (251)
++.+|++- ..| -.+|.+ +...... ......++.++|++....+-.-.+- ..+++.+..|+..+..+.
T Consensus 205 ~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 281 (570)
T 3c5e_A 205 SQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLL 281 (570)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECC
T ss_pred CCCcEEEEECCCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecC
Confidence 45666653 223 248888 4432111 1124568899999988888654432 356788888988776653
Q ss_pred -CCCHHHHHHHHhhcCccEEEEccchhhhhh
Q psy4550 97 -SYPPALLESVLDDAKPSIVITKGEYMDRLE 126 (251)
Q Consensus 97 -~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 126 (251)
...+..+...++..++++++..+.....+.
T Consensus 282 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 282 PKFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp SSCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 678999999999999999998877665543
No 57
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=81.94 E-value=9 Score=32.65 Aligned_cols=83 Identities=12% Similarity=0.019 Sum_probs=63.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|.+.+...+..++.. .++.++|++...+|-.-. .+..++.++..|+..+..+ ..+++.+...++..++++++.
T Consensus 199 ~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~ 274 (549)
T 3g7s_A 199 MLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWA 274 (549)
T ss_dssp EEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEE
T ss_pred EEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEe
Confidence 58999998877766543 478899999888885433 2344677788898888765 678899999999999999998
Q ss_pred ccchhhhh
Q psy4550 118 KGEYMDRL 125 (251)
Q Consensus 118 ~~~~~~~~ 125 (251)
.+.....+
T Consensus 275 ~P~~~~~l 282 (549)
T 3g7s_A 275 VPPALNVL 282 (549)
T ss_dssp CHHHHHHH
T ss_pred CCHHHHHH
Confidence 87655443
No 58
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=78.90 E-value=22 Score=29.90 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=65.7
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~ 95 (251)
.++.+|++- ..| -.+|.+.+...+..+...+ ++.++|++...++-.-. ++..+++.+..|+..+..
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~- 228 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL- 228 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-
Confidence 355666653 223 2489999988877665544 77889999888875432 234578889999988866
Q ss_pred CCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 96 TSYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
+...++.+...+ ..+++.++..+.....
T Consensus 229 ~~~~~~~~~~~i-~~~~t~~~~~P~~~~~ 256 (505)
T 3nyq_A 229 GRFSTEGAAREL-NDGATMLFGVPTMYHR 256 (505)
T ss_dssp SSCCHHHHHHHH-TTTCCEEEECHHHHHH
T ss_pred CCCChHHHHHHH-hhCCeEEEehHHHHHH
Confidence 456777777777 6788888887665443
No 59
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=78.83 E-value=0.81 Score=39.59 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=26.1
Q ss_pred CCCCCeEEEEeccCCC-CCCceEEeccHHHHH
Q psy4550 158 VGLDDIAYIVYSSGTT-GKPKGIVCPHRGAVH 188 (251)
Q Consensus 158 ~~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 188 (251)
..++.+.+..-||||| |++|-+..|...+-.
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 4566777899999999 689999999998754
No 60
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=78.70 E-value=0.78 Score=39.66 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=26.7
Q ss_pred CCCCCCeEEEEeccCCC-CCCceEEeccHHHHH
Q psy4550 157 QVGLDDIAYIVYSSGTT-GKPKGIVCPHRGAVH 188 (251)
Q Consensus 157 ~~~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 188 (251)
...++.+....-||||| |++|-+..|...+-.
T Consensus 94 iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 94 ILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred ccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 34566777899999999 789999999998765
No 61
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=78.27 E-value=13 Score=29.75 Aligned_cols=66 Identities=9% Similarity=-0.070 Sum_probs=51.4
Q ss_pred HHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 55 YLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 55 ~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
.+.+.| +++|.+..+....+=--..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 76 ~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 76 DAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 344444 678877667777777778888999999997777777777777788899999999998653
No 62
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=77.59 E-value=7.7 Score=32.96 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=69.3
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPL 94 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~-~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i 94 (251)
.|+.+|++. ..| -.+|.+.+...+........ ..++.++|++...+|-.-. +...+++.+..|+..+..
T Consensus 176 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~ 255 (536)
T 3ni2_A 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM 255 (536)
T ss_dssp CTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEEC
T ss_pred CccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEc
Confidence 356677652 222 25899998776655433222 3478899999988885433 234567888899988876
Q ss_pred CCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 95 ETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
+ ......+...++..+++++...+.....+
T Consensus 256 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 285 (536)
T 3ni2_A 256 P-KFEIGSLLGLIEKYKVSIAPVVPPVMMSI 285 (536)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhCCeEEEccHHHHHHH
Confidence 4 57889999999999999999877655443
No 63
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=77.51 E-value=9.5 Score=32.46 Aligned_cols=85 Identities=9% Similarity=-0.094 Sum_probs=61.1
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+|.+.+...+.... .....++.++|++...+|-.-.+ +...++++..|+..+..++..+++.+...++..++++++.
T Consensus 195 ~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~ 273 (541)
T 1v25_A 195 VYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAG 273 (541)
T ss_dssp EEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEE
T ss_pred eeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEec
Confidence 489988765433210 11234788999999888854322 3356778889999888776678999999999999999998
Q ss_pred ccchhhh
Q psy4550 118 KGEYMDR 124 (251)
Q Consensus 118 ~~~~~~~ 124 (251)
.+.....
T Consensus 274 ~P~~~~~ 280 (541)
T 1v25_A 274 VPTVWLA 280 (541)
T ss_dssp CHHHHHH
T ss_pred chHHHHH
Confidence 7765443
No 64
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=77.07 E-value=10 Score=32.56 Aligned_cols=96 Identities=9% Similarity=0.118 Sum_probs=65.7
Q ss_pred CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCC
Q psy4550 27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETS 97 (251)
Q Consensus 27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~ 97 (251)
++.+|++- ..| -.+|.+.+...+..+. ...++.++|++..+.+-... .+..++..+..|+..+..+..
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 257 (563)
T 1amu_A 181 STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD 257 (563)
T ss_dssp TTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred CCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChH
Confidence 45666653 223 2489988865554332 34588999999988875432 334567778889888776542
Q ss_pred --CCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 98 --YPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 98 --~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
..+..+...++..+++++...+.....+
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 287 (563)
T 1amu_A 258 TINDFVKFEQYINQKEITVITLPPTYVVHL 287 (563)
T ss_dssp HHTCHHHHHHHHHHTTCCEEEECHHHHTTS
T ss_pred hhcCHHHHHHHHHHcCCcEEEeCHHHHHHH
Confidence 4678899999999999998877655444
No 65
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=74.60 E-value=19 Score=29.83 Aligned_cols=91 Identities=9% Similarity=-0.070 Sum_probs=63.7
Q ss_pred CCCceEEEec--------CCCeeeHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEccCCH--HHHHHHHHHHHHCC
Q psy4550 26 TPDKIAVVDH--------DGRSITFKQLDEWTDIVGTYLINQGCIV------GSTVGVLMERCL--EWTISYIAIHKAGG 89 (251)
Q Consensus 26 ~~~~~a~~~~--------~~~~~T~~~l~~~~~~~a~~L~~~g~~~------g~~V~l~~~~~~--~~~~~~~a~~~~G~ 89 (251)
.++.+|++-. .+-.+|.+.+...+..+...+ ++.+ +|++...+|-.- .+...+++.+..|+
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~ 257 (480)
T 3t5a_A 181 EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY---FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGY 257 (480)
T ss_dssp SCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH---CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTC
T ss_pred CCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh---ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCC
Confidence 3456676532 234599999988877766554 3344 888888888553 33556788899999
Q ss_pred eEeeCCCC---CCHHHHHHHHhhcCccEEEEccc
Q psy4550 90 GYLPLETS---YPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 90 ~~v~i~~~---~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
..+..++. ..++.+...++..++. +...+.
T Consensus 258 ~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~ 290 (480)
T 3t5a_A 258 PAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPN 290 (480)
T ss_dssp CEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECH
T ss_pred ceEEECHHHHHHCHHHHHHHHHhhcee-EeeChH
Confidence 88877654 4778899999999998 444443
No 66
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=74.12 E-value=13 Score=31.83 Aligned_cols=96 Identities=9% Similarity=0.001 Sum_probs=66.9
Q ss_pred CCCceEEEecC-C-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCC
Q psy4550 26 TPDKIAVVDHD-G-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 26 ~~~~~a~~~~~-~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~ 96 (251)
.++.+|++..+ | -.+|.+.+..... .....++.++|++..+++-+ .-....+++.+..|+..+..+.
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 45667766322 2 3589888754322 12334788999999888864 3345567788889998777654
Q ss_pred -CCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 97 -SYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 97 -~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
...+..+...+++.+++++...+.....+
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 317 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFL 317 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 56788999999999999999877655443
No 67
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=73.58 E-value=15 Score=31.98 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=66.7
Q ss_pred CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCC-C
Q psy4550 27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLE-T 96 (251)
Q Consensus 27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~-~ 96 (251)
++.+|++- ..| -.+|.+.+...+. .....++.++|++....+-+-+ .+..+++.+..|+.++..+ .
T Consensus 163 ~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp TTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred CCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence 56777653 222 2489888754432 2234588899999999886533 3455788888898877663 3
Q ss_pred CCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 97 SYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
..+++.+...+++.+++++...+.....+
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l 267 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTL 267 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHH
Confidence 56889999999999999999877655443
No 68
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=72.58 E-value=19 Score=31.48 Aligned_cols=85 Identities=14% Similarity=-0.023 Sum_probs=60.5
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHH--HHHHHHHHHCCeEeeCCCC---CCHHHHHHHHhhcCcc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT--ISYIAIHKAGGGYLPLETS---YPPALLESVLDDAKPS 113 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~--~~~~a~~~~G~~~v~i~~~---~~~~~l~~~l~~~~~~ 113 (251)
.+|.+.+......... ...+++++|++....+-+-..- ..+++.+..|+..+..+.. .++..+...+++.+++
T Consensus 275 ~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt 352 (652)
T 1pg4_A 275 LHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352 (652)
T ss_dssp EEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCS
T ss_pred EECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCe
Confidence 4888887654432211 2357889999988877554332 4567889999988877642 4678899999999999
Q ss_pred EEEEccchhhhh
Q psy4550 114 IVITKGEYMDRL 125 (251)
Q Consensus 114 ~vi~~~~~~~~~ 125 (251)
++.+.+.....+
T Consensus 353 ~~~~~P~~~~~l 364 (652)
T 1pg4_A 353 ILYTAPTAIRAL 364 (652)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEeCHHHHHHH
Confidence 999877655443
No 69
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=70.44 E-value=21 Score=30.33 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=65.7
Q ss_pred CCceEEEecC-C-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH--HHHHHHHHHHCCeEeeCCC
Q psy4550 27 PDKIAVVDHD-G-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW--TISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 27 ~~~~a~~~~~-~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~--~~~~~a~~~~G~~~v~i~~ 96 (251)
|+.++++..+ | -.+|.+.+...+..+.. ...++.++|++...+|-.-.+ ...+++.+..|+..+.+.+
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~ 252 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISH--DGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRT 252 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHH--TTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCH
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhh--cccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcch
Confidence 5677776422 2 35899988766554432 125889999999988865433 3456777888888776654
Q ss_pred ---CCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 97 ---SYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 97 ---~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
...+..+...++..++++++..+...
T Consensus 253 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~ 281 (576)
T 3gqw_A 253 QDFAMRPLQWLKLISKNRGTVSVAPPFGY 281 (576)
T ss_dssp HHHHHCTTHHHHHHHHTTCCEEEECHHHH
T ss_pred hHhhhCHHHHHHHHHHhCCeEEEcCHHHH
Confidence 24667889999999999999877544
No 70
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=69.97 E-value=20 Score=33.09 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=69.4
Q ss_pred CCCceEEEec-CC-------CeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEccCCH--HHHHHHHHHHHHCCeEeeC
Q psy4550 26 TPDKIAVVDH-DG-------RSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCL--EWTISYIAIHKAGGGYLPL 94 (251)
Q Consensus 26 ~~~~~a~~~~-~~-------~~~T~~~l~~~~~~~a~~L~-~~g~~~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~i 94 (251)
.|+.+|++-. .| -.+|.+.+...+........ ..++.++|++...+|-.- .+...++..+..|+..+..
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~ 302 (979)
T 3tsy_A 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM 302 (979)
T ss_dssp CTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEEC
T ss_pred CccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEe
Confidence 4677887632 22 35899998776654433222 347889999998888543 2334567888899988876
Q ss_pred CCCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550 95 ETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
+ ...++.+...+++.+++++...+.....
T Consensus 303 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 331 (979)
T 3tsy_A 303 P-KFEINLLLELIQRCKVTVAPMVPPIVLA 331 (979)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHH
T ss_pred C-CCCHHHHHHHHHHhCCeEEEcHHHHHHH
Confidence 4 5678899999999999999987765443
No 71
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=69.01 E-value=31 Score=28.55 Aligned_cols=64 Identities=13% Similarity=-0.059 Sum_probs=46.9
Q ss_pred HHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 56 LINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 56 L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
..+.| +++|....+....+=--..+.+++...|..++.+-|...+..-...++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34556 46776555555556666777788889998777666666666777788999999999974
No 72
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=67.36 E-value=22 Score=29.96 Aligned_cols=96 Identities=11% Similarity=-0.004 Sum_probs=65.9
Q ss_pred CCceEEEe-cCC-------CeeeHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHH--HHHHHHHHHCCeEeeCC
Q psy4550 27 PDKIAVVD-HDG-------RSITFKQL-DEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT--ISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 27 ~~~~a~~~-~~~-------~~~T~~~l-~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~--~~~~a~~~~G~~~v~i~ 95 (251)
++.++++. ..| -.+|.+.+ ....... ....++.++|++...++-.-.+- ..++..+..|+..+.++
T Consensus 182 ~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 258 (529)
T 2v7b_A 182 CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMA 258 (529)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCC
T ss_pred CCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEec
Confidence 46667653 222 24888887 3222111 12247889999988888654442 34567888999988887
Q ss_pred CCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 96 TSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
+..+++.+...+++.++++++..+.....+
T Consensus 259 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (529)
T 2v7b_A 259 ERPTADAIFARLVEHRPTVFYGVPTLYANM 288 (529)
T ss_dssp SCCCHHHHHHHHHHSCCSEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCEEEEecHHHHHHH
Confidence 778899999999999999999887765443
No 73
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=66.93 E-value=31 Score=27.34 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEccCCH------HHHHHHHH-HHHHCCeEeeCCCCC------------CHHHHHHHHhhcCccEEEEcc
Q psy4550 60 GCIVGSTVGVLMERCL------EWTISYIA-IHKAGGGYLPLETSY------------PPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~------~~~~~~~a-~~~~G~~~v~i~~~~------------~~~~l~~~l~~~~~~~vi~~~ 119 (251)
-+++||+|+|++|.+. +-+-.... +-..|..++.-+... ..+++..++.+-+++.|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 5789999999999753 22222222 334576666443211 246777888888999999854
No 74
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=66.92 E-value=26 Score=30.77 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=60.0
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH---H-hCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecC
Q psy4550 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH---R-AYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISD 230 (251)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~-~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~ 230 (251)
.++.+|++.... .+| ....+|.+.|...+..++ . ..|+.++|++...+ -+...+++++..|+..+..+.
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~ 171 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFA 171 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCC
Confidence 456777765432 122 235689988876655444 3 66889999986644 345678999999999998887
Q ss_pred ccccCchHHHhhhhcccc
Q psy4550 231 EVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 231 ~~~~~~~~~~~~i~~~~v 248 (251)
.+.+..+...++..++
T Consensus 172 --~~~~~~l~~~l~~~~~ 187 (663)
T 1ry2_A 172 --GFSSNSLRDRINDGDS 187 (663)
T ss_dssp --TSCHHHHHHHHHHHTC
T ss_pred --CCCHHHHHHHHHhcCC
Confidence 4888888888877654
No 75
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=66.87 E-value=41 Score=28.20 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=65.4
Q ss_pred CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCC
Q psy4550 27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETS 97 (251)
Q Consensus 27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~ 97 (251)
++.++++. ..| -.+|.+.+...+..+... ...++.+++++....+-+... +..+++++..|+..+..+..
T Consensus 144 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 222 (521)
T 3l8c_A 144 GDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIED-AAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKE 222 (521)
T ss_dssp TTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHC-TTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGG
T ss_pred CCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhc-cccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHH
Confidence 45666653 223 248999888665443321 124677888888877755333 45667788889888877653
Q ss_pred --CCHHHHHHHHhhcCccEEEEccchhh
Q psy4550 98 --YPPALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 98 --~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
.....+...++..+++++...+....
T Consensus 223 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 250 (521)
T 3l8c_A 223 LVADFKQLFTTIAQLPVGIWTSTPSFAD 250 (521)
T ss_dssp GTTCHHHHHHHHHHSCCSEEEECHHHHH
T ss_pred HhhCHHHHHHHHHHcCCcEEEeCCCHHH
Confidence 36788999999999999988776544
No 76
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=65.59 E-value=13 Score=31.19 Aligned_cols=68 Identities=13% Similarity=-0.084 Sum_probs=50.8
Q ss_pred EEeccHHHHHHHHHHH---HhCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550 179 IVCPHRGAVHAYKWRH---RAYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL 248 (251)
Q Consensus 179 v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v 248 (251)
-.+|++.|...+..++ ...|+.++|++...+ -+...+++++..|+..+..+. .+.++++...++..++
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~--~~~~~~l~~il~~~~~ 101 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNT--AYTLHELDYFITDAEP 101 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCT--TCCHHHHHHHHHHHCC
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCC--CCCHHHHHHHHHhcCC
Confidence 3588998877665444 345889999886543 345678999999999999987 4778888888777654
No 77
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=64.66 E-value=48 Score=25.83 Aligned_cols=89 Identities=8% Similarity=-0.122 Sum_probs=52.9
Q ss_pred CceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH
Q psy4550 28 DKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLES 105 (251)
Q Consensus 28 ~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~ 105 (251)
.++.+...+ +.+-|+++-- +..+...+.+.| +++|+.|.. ...+---..+.++|...|..++.+-|...+..-..
T Consensus 31 ~~i~~K~E~~~ptgSfK~R~--a~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~ 107 (313)
T 2q3b_A 31 ADIVAKLEFFNPANSVKDRI--GVAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRM 107 (313)
T ss_dssp SEEEEEEGGGSTTSBTHHHH--HHHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred cEEEEEehhcCCCCcHHHHH--HHHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 345554311 2234555432 222333344455 366766544 44444555666777899987776666555556667
Q ss_pred HHhhcCccEEEEcc
Q psy4550 106 VLDDAKPSIVITKG 119 (251)
Q Consensus 106 ~l~~~~~~~vi~~~ 119 (251)
.++..++++++++.
T Consensus 108 ~~~~~Ga~v~~~~~ 121 (313)
T 2q3b_A 108 LLRAYGAELILTPG 121 (313)
T ss_dssp HHHHTTCEEEEECG
T ss_pred HHHHCCCEEEEeCC
Confidence 78899999999985
No 78
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=64.62 E-value=36 Score=27.07 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=38.3
Q ss_pred CCCCCCEEEEEccCCHH------HHHHHHH-HHHHCCeEeeCCCC--------C----CHHHHHHHHhhcCccEEEEcc
Q psy4550 60 GCIVGSTVGVLMERCLE------WTISYIA-IHKAGGGYLPLETS--------Y----PPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~------~~~~~~a-~~~~G~~~v~i~~~--------~----~~~~l~~~l~~~~~~~vi~~~ 119 (251)
-+++||+|+|++|.+.- -+-.... +-..|..++.-... . ..+++...+.+-+++.|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 57899999999998732 2222232 23457766643221 1 246677777888899999854
No 79
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=62.97 E-value=40 Score=27.32 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=39.5
Q ss_pred cCCCCCCEEEEEccCCHH------HHHHHHH-HHHHCCeEeeCCCCC------------CHHHHHHHHhhcCccEEEEcc
Q psy4550 59 QGCIVGSTVGVLMERCLE------WTISYIA-IHKAGGGYLPLETSY------------PPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~~~------~~~~~~a-~~~~G~~~v~i~~~~------------~~~~l~~~l~~~~~~~vi~~~ 119 (251)
.-+++||+|+|++|++.- -+-.... +-..|..++.-+... ..+++...+.+-+++.|++..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 368999999999998742 2222232 234577666443211 246677777778899999854
No 80
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=62.74 E-value=17 Score=28.75 Aligned_cols=77 Identities=9% Similarity=-0.037 Sum_probs=49.7
Q ss_pred eeeHHHHHHHHHHHH---HHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVG---TYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a---~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+++.+......... ..++..++++|++|+|....+.-...+.++....|+.++.++. +++. ..+.+..++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEE
Confidence 367776544433322 2355568999999999988766667666666666776666643 3333 445667777777
Q ss_pred EEc
Q psy4550 116 ITK 118 (251)
Q Consensus 116 i~~ 118 (251)
+-.
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 81
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=62.60 E-value=26 Score=30.07 Aligned_cols=98 Identities=8% Similarity=-0.121 Sum_probs=65.4
Q ss_pred CCCceEEEe-cCCC-------eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH--HHHHHHHHHHCCeEeeCC
Q psy4550 26 TPDKIAVVD-HDGR-------SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW--TISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 26 ~~~~~a~~~-~~~~-------~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~--~~~~~a~~~~G~~~v~i~ 95 (251)
.++.+|++. ..|. .+|...+.... .......++.+++++....+..... ...+++.+..|+..+..+
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 299 (580)
T 3etc_A 223 KNEDICLVYFSSGTAGFPKMVEHDNTYPLGHI---LTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYD 299 (580)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEETTHHHHHH---HHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCccEEEeccHHHHHHH---HHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEec
Confidence 345666653 2232 36665443322 2222335888999988877765332 334788899999888775
Q ss_pred -CCCCHHHHHHHHhhcCccEEEEccchhhhhh
Q psy4550 96 -TSYPPALLESVLDDAKPSIVITKGEYMDRLE 126 (251)
Q Consensus 96 -~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 126 (251)
....++.+...+++.++++++..+.....+.
T Consensus 300 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 331 (580)
T 3etc_A 300 YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLI 331 (580)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCeEEEccHHHHHHHH
Confidence 5678999999999999999998877655443
No 82
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=62.26 E-value=25 Score=28.30 Aligned_cols=60 Identities=12% Similarity=-0.048 Sum_probs=39.5
Q ss_pred HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC-----CCCHHHHHHHHhhcC--ccEEEE
Q psy4550 55 YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET-----SYPPALLESVLDDAK--PSIVIT 117 (251)
Q Consensus 55 ~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~l~~~l~~~~--~~~vi~ 117 (251)
.|...++++||.|.+-.+....+ .-++...|+.++.++. ..+.+++...+...+ +++|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 34555788999998877655443 3456678987666543 236788888774434 666664
No 83
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=61.20 E-value=54 Score=26.01 Aligned_cols=63 Identities=13% Similarity=-0.048 Sum_probs=42.6
Q ss_pred HHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 56 LINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 56 L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+.+.| +++|+.|.... .+---..+.+++...|..++.+-|...+..-...++..++++++++.
T Consensus 69 a~~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 132 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEG 132 (343)
T ss_dssp HHHHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 44445 46776554443 34444566677788998776665655556667788899999999875
No 84
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=60.94 E-value=58 Score=25.50 Aligned_cols=65 Identities=11% Similarity=-0.078 Sum_probs=44.6
Q ss_pred HHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 56 LINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 56 L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
+.+.| +++|....+....+=--..+.+++...|..++.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 44555 456754444455555556677788899987776666555566667888999999998753
No 85
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=60.53 E-value=35 Score=26.64 Aligned_cols=77 Identities=10% Similarity=-0.021 Sum_probs=47.8
Q ss_pred eeeHHHHHHHHHHH---HHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIV---GTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~---a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+++.+........ -+.|+..++++|++|+|....+.--..+...+...|+.++.+. +.++ ...++..++..+
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 36777765433221 1334556899999999997555444444444457788766553 4555 556677888877
Q ss_pred EEcc
Q psy4550 116 ITKG 119 (251)
Q Consensus 116 i~~~ 119 (251)
+...
T Consensus 201 i~~~ 204 (321)
T 3tqh_A 201 INYH 204 (321)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7543
No 86
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=60.53 E-value=53 Score=25.50 Aligned_cols=90 Identities=10% Similarity=-0.085 Sum_probs=51.4
Q ss_pred CceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH
Q psy4550 28 DKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLES 105 (251)
Q Consensus 28 ~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~ 105 (251)
.++.+...+ +-+-|+++-- +..+...+.+.| +++|+.|.. ...+=--..+.++|...|..++.+-|...+..-..
T Consensus 29 ~~i~~K~E~~~ptgSfK~R~--a~~~l~~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 105 (308)
T 2egu_A 29 ADVYLKLEFMNPGSSVKDRI--ALAMIEAAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRN 105 (308)
T ss_dssp CEEEEEEGGGSTTSBTHHHH--HHHHHHHHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHH
T ss_pred CEEEEEecccCCCCChHHHH--HHHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 456664322 2234444332 222233344445 366665544 33333345566777889987766655555555666
Q ss_pred HHhhcCccEEEEccc
Q psy4550 106 VLDDAKPSIVITKGE 120 (251)
Q Consensus 106 ~l~~~~~~~vi~~~~ 120 (251)
.++..++++++++..
T Consensus 106 ~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 106 LLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 788999999999753
No 87
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=58.34 E-value=45 Score=26.47 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=38.1
Q ss_pred CCCCCCEEEEEccCCHH------HHHHHHHHH-HHCCeEeeCCCC--------C----CHHHHHHHHhhcCccEEEEcc
Q psy4550 60 GCIVGSTVGVLMERCLE------WTISYIAIH-KAGGGYLPLETS--------Y----PPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~------~~~~~~a~~-~~G~~~v~i~~~--------~----~~~~l~~~l~~~~~~~vi~~~ 119 (251)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-+.. . ..+++...+.+-+++.|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999997642 222223323 357766644321 1 246677777888899999854
No 88
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=57.61 E-value=62 Score=25.40 Aligned_cols=57 Identities=11% Similarity=-0.100 Sum_probs=37.1
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC----CCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS----YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~l~~~l~~~~~~~vi~~ 118 (251)
.++||.|.+..+....+.....++...|+.++.++.. .+.+++...++. ++++|+..
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 3578988887776665555555556678877666532 456778777754 56666654
No 89
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=56.90 E-value=67 Score=25.25 Aligned_cols=63 Identities=11% Similarity=-0.019 Sum_probs=44.6
Q ss_pred HHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 56 LINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 56 L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
..+.| +++|+.|.-. ..+---..+.+++...|..++.+-|...+..-...++..++++++++.
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 44445 5677766543 445555677778888898777666666666667788999999999975
No 90
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=56.56 E-value=62 Score=26.61 Aligned_cols=56 Identities=9% Similarity=0.016 Sum_probs=32.6
Q ss_pred CCCCCEEEEEccCCHHHHHHHH-HHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYI-AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~-a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+........+- .+...|+.++.++.. ..+.+...++. ++++|+..
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e 174 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLE 174 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEE
Confidence 5677777665554444333332 455667777666654 56666666643 55666643
No 91
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=55.99 E-value=25 Score=28.02 Aligned_cols=50 Identities=12% Similarity=-0.071 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 72 ~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
..+=--..+.++|...|..++.+-|...+..-...++..++++++++...
T Consensus 83 SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 83 SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 34444566677888899877766666666677788899999999997654
No 92
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=54.55 E-value=66 Score=25.41 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=38.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-------CCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-------YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-------~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+....+ ..++...|+.++.++.. ...+++...++..++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 46789888776665543 34556788877777653 678899999976677777653
No 93
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=53.72 E-value=81 Score=24.95 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=47.2
Q ss_pred eeeHHHHHHHH--HHHH-HHHHh-cCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEe-eCCCCCCHHHHHHHHhhcCc
Q psy4550 39 SITFKQLDEWT--DIVG-TYLIN-QGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYL-PLETSYPPALLESVLDDAKP 112 (251)
Q Consensus 39 ~~T~~~l~~~~--~~~a-~~L~~-~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v-~i~~~~~~~~l~~~l~~~~~ 112 (251)
.+++.+..... .-.| ..|.+ .++++|++|+|....+ +-..++.+ +...|+..+ .....-..++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiql-ak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQI-AAALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHH-HHHHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHH-HHHcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 36777654321 1112 23444 4899999999999855 44444444 456788444 44443344445566778888
Q ss_pred cEEEEc
Q psy4550 113 SIVITK 118 (251)
Q Consensus 113 ~~vi~~ 118 (251)
..++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 888764
No 94
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=53.39 E-value=33 Score=29.12 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=61.1
Q ss_pred eeeHHHHHHHHHHHHHHHH-----hcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCc
Q psy4550 39 SITFKQLDEWTDIVGTYLI-----NQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKP 112 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~-----~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~ 112 (251)
.+|.+.+...+..++..+. ...+..++++....+.... .+..++..+..|+..+........+.+...++..++
T Consensus 194 ~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~ 273 (562)
T 3ite_A 194 RVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGV 273 (562)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTC
T ss_pred EECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCC
Confidence 4899999988888777654 2356778888777775543 344567788889888766544445677888999999
Q ss_pred cEEEEccchhh
Q psy4550 113 SIVITKGEYMD 123 (251)
Q Consensus 113 ~~vi~~~~~~~ 123 (251)
+++...+...+
T Consensus 274 t~~~~~P~~l~ 284 (562)
T 3ite_A 274 THAGIVPSLLD 284 (562)
T ss_dssp CEEEECHHHHH
T ss_pred CEEEcCHHHHh
Confidence 99888766544
No 95
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=51.58 E-value=47 Score=25.75 Aligned_cols=73 Identities=7% Similarity=-0.052 Sum_probs=45.6
Q ss_pred eeeHHHHHHHHHHHHH---HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVGT---YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~---~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+++.+.......++. .|...++++|++|+|.....+-..++.+ +...|+.++.+. +++.+. .++..+++.+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~ql-ak~~Ga~Vi~~~---~~~~~~-~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQM-LNNAGYVVDLVS---ASLSQA-LAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHH-HHHHTCEEEEEC---SSCCHH-HHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHH-HHHcCCEEEEEE---ChhhHH-HHHHcCCCEE
Confidence 4688876533333332 3444589999999999994444444444 456798777665 233333 3456788888
Q ss_pred E
Q psy4550 116 I 116 (251)
Q Consensus 116 i 116 (251)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 7
No 96
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=51.00 E-value=13 Score=28.71 Aligned_cols=23 Identities=26% Similarity=0.127 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
..+.+.|+++|+++||.|.|...
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsS 40 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSS 40 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEec
Confidence 34567799999999999999876
No 97
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=50.71 E-value=85 Score=24.27 Aligned_cols=65 Identities=14% Similarity=-0.035 Sum_probs=42.8
Q ss_pred HHHhcC-CCCCC--EEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 55 YLINQG-CIVGS--TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 55 ~L~~~g-~~~g~--~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
.+.+.| +++|+ .|.. ...+---..+.+++...|..++.+-|...+..-...++..++++++++..
T Consensus 50 ~a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 50 DAEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344445 56676 4433 34444445666778899987776655555566667888999999998764
No 98
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=48.25 E-value=66 Score=25.49 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=37.6
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC--CC---CCHHHHHHHHhhcCccEEEEc
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE--TS---YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~--~~---~~~~~l~~~l~~~~~~~vi~~ 118 (251)
++..++++||.|.+..+....+. -++...|+.++.++ +. ...+++...++. ++++|+..
T Consensus 71 ~~~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 71 LMALGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HHHTTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HHHcCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 33445788999888777665543 34566787665554 32 467788877764 56666654
No 99
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=48.13 E-value=15 Score=28.43 Aligned_cols=21 Identities=29% Similarity=0.120 Sum_probs=18.1
Q ss_pred HHHHHHhcCCCCCCEEEEEcc
Q psy4550 52 VGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 52 ~a~~L~~~g~~~g~~V~l~~~ 72 (251)
+...|+++|+++||.|.|.+.
T Consensus 18 L~~~L~~LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 18 ITEDLKALGLKKGMTVLVHSS 38 (273)
T ss_dssp HHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHcCCCCCCEEEEEec
Confidence 556789999999999999875
No 100
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=48.03 E-value=15 Score=28.58 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=23.2
Q ss_pred CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 36 DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 36 ~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
+++.+|-.+|. +.|+++|+++||.|.|.+.
T Consensus 18 ~~~~~T~~~L~-------~~L~~LGI~~Gd~llVHsS 47 (286)
T 3sma_A 18 DRELVTRDRLA-------SDLAALGVRPGGVLLVHAS 47 (286)
T ss_dssp -CCEECHHHHH-------HHHHHHTCCTTCEEEEEEC
T ss_pred cCCCcCHHHHH-------HHHHHcCCCCCCEEEEEec
Confidence 34567776654 5688999999999999876
No 101
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=47.93 E-value=79 Score=25.23 Aligned_cols=61 Identities=15% Similarity=0.076 Sum_probs=39.5
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC----CCHHHHHHHHhhc--CccEEEEcc
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS----YPPALLESVLDDA--KPSIVITKG 119 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~l~~~l~~~--~~~~vi~~~ 119 (251)
++..++++||.|.+..+....+.. ++...|+.++.++.. ...+++...++.. ++++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 333457889999888877665543 344578776666532 4678888888764 566666543
No 102
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=47.31 E-value=39 Score=27.78 Aligned_cols=50 Identities=8% Similarity=0.063 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCEEEEEccCC-HHH-HHHHHHHHHHCCeEeeC
Q psy4550 45 LDEWTDIVGTYLINQ--GCIVGSTVGVLMERC-LEW-TISYIAIHKAGGGYLPL 94 (251)
Q Consensus 45 l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~-~~~-~~~~~a~~~~G~~~v~i 94 (251)
+..+..++|..+.+. ++++|+.|.|..+.. .++ -.+.-++..+|+.++.+
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 57 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV 57 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 356777888888774 799999999999954 333 33666788889977754
No 103
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=47.12 E-value=87 Score=24.64 Aligned_cols=74 Identities=11% Similarity=-0.111 Sum_probs=44.8
Q ss_pred eeeHHHHHHHHHHH---HHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIV---GTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~---a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+++.+........ -+.|...++++|++|+|.....+-..++.+| ...|+.++.+.... +.+. .++..+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~--~~~~-~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYA-VAMGAEVSVFARNE--HKKQ-DALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHH-HHTTCEEEEECSSS--TTHH-HHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCH--HHHH-HHHhcCCCee
Confidence 46777765322221 1345566899999999998644454544444 46788777665433 2333 4456778877
Q ss_pred E
Q psy4550 116 I 116 (251)
Q Consensus 116 i 116 (251)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
No 104
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=45.37 E-value=69 Score=25.10 Aligned_cols=76 Identities=13% Similarity=-0.004 Sum_probs=47.7
Q ss_pred eeeHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDI---VGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~---~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+++.+....... .-+.|...++++|++|++.....+-..++.+|- ..|+.++.++. +++.+. .++..++..+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEE
Confidence 4677775533222 123455568999999999887556666555554 56887666543 444444 5567788887
Q ss_pred EEc
Q psy4550 116 ITK 118 (251)
Q Consensus 116 i~~ 118 (251)
+..
T Consensus 215 i~~ 217 (340)
T 3s2e_A 215 VNA 217 (340)
T ss_dssp EET
T ss_pred EeC
Confidence 754
No 105
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=45.26 E-value=1.1e+02 Score=23.85 Aligned_cols=90 Identities=11% Similarity=-0.075 Sum_probs=53.4
Q ss_pred CceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH
Q psy4550 28 DKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLES 105 (251)
Q Consensus 28 ~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~ 105 (251)
.++.+...+ +-+-|+++--. ..+...+.+.|. ++|+.|.- ...+---..+.+++...|..++.+-|...+..-..
T Consensus 26 ~~i~~K~E~~~ptGSfK~R~a--~~~i~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 102 (316)
T 1y7l_A 26 GNVVVKIEGRNPSYSVKCRIG--ANMVWQAEKDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERKR 102 (316)
T ss_dssp TCEEEEETTSSGGGBTHHHHH--HHHHHHHHHTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 456665322 22334443322 223333445554 66665544 34454556677778899987766655555566677
Q ss_pred HHhhcCccEEEEccc
Q psy4550 106 VLDDAKPSIVITKGE 120 (251)
Q Consensus 106 ~l~~~~~~~vi~~~~ 120 (251)
.++..++++++++..
T Consensus 103 ~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 103 LLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 888999999998764
No 106
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=44.96 E-value=71 Score=25.34 Aligned_cols=60 Identities=10% Similarity=0.059 Sum_probs=39.3
Q ss_pred HHHh--cCCCCCCEEEEEccCCHHHHHHHHHHHHH-CCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 55 YLIN--QGCIVGSTVGVLMERCLEWTISYIAIHKA-GGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 55 ~L~~--~g~~~g~~V~l~~~~~~~~~~~~~a~~~~-G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
.|.+ .++++|++|+|.....+-..++.+|- .. |+.++.++. +++.+. .++..+++.++..
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak-~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~~ 238 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLK-VMTPATVIALDV--KEEKLK-LAERLGADHVVDA 238 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HHCCCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEeC--CHHHHH-HHHHhCCCEEEec
Confidence 3555 68999999999998555555555554 45 886665543 344443 4457788877754
No 107
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=44.27 E-value=50 Score=31.59 Aligned_cols=96 Identities=9% Similarity=0.085 Sum_probs=67.3
Q ss_pred CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCC
Q psy4550 26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~ 96 (251)
.|+.+|++- ..| -.+|.+.+.... ......++.++|++..+.+-+.+. +.-+++.+..|+..+..++
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~----~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGLV----KHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH----SSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH----HHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 456677653 223 248988876431 122335788999998888866443 4457788888988887765
Q ss_pred --CCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550 97 --SYPPALLESVLDDAKPSIVITKGEYMDRL 125 (251)
Q Consensus 97 --~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (251)
..+++.+...++..+++++...+.....+
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l 711 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLL 711 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHH
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHH
Confidence 45788999999999999999877665544
No 108
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=43.98 E-value=82 Score=24.93 Aligned_cols=79 Identities=13% Similarity=-0.034 Sum_probs=45.3
Q ss_pred eeeHHHHHHHHH--HHH-HHHHhc-CCCCC-CEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCC-CCCHHHHHHHHhhcC
Q psy4550 39 SITFKQLDEWTD--IVG-TYLINQ-GCIVG-STVGVLMERC-LEWTISYIAIHKAGGGYLPLET-SYPPALLESVLDDAK 111 (251)
Q Consensus 39 ~~T~~~l~~~~~--~~a-~~L~~~-g~~~g-~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~-~~~~~~l~~~l~~~~ 111 (251)
.+++.+...... ..| ..|.+. ++++| ++|+|....+ +-..++.+| ...|+..+.+.. ....++....++..+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqla-k~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIG-KLLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHH-HHHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHH-HHCCCEEEEEecCccccHHHHHHHHhcC
Confidence 477766543221 111 234443 79999 9999998844 555555544 467886555532 222123344456778
Q ss_pred ccEEEEc
Q psy4550 112 PSIVITK 118 (251)
Q Consensus 112 ~~~vi~~ 118 (251)
++.++..
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 8887754
No 109
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=43.53 E-value=1.1e+02 Score=23.88 Aligned_cols=59 Identities=8% Similarity=-0.137 Sum_probs=40.3
Q ss_pred HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 57 INQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 57 ~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+..++++|++|+|....+.--..+...+...|+.++.+. .+++.+....+..++..++.
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~--~~~~~~~~~~~~~g~~~~~~ 201 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIA--GGAEKCRFLVEELGFDGAID 201 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCCSEEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHcCCCEEEE
Confidence 445899999999999865444444455557888766553 35566666557778877765
No 110
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=43.42 E-value=43 Score=27.60 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCEEEEEccCC-HHH-HHHHHHHHHHCCeEeeC
Q psy4550 45 LDEWTDIVGTYLINQ--GCIVGSTVGVLMERC-LEW-TISYIAIHKAGGGYLPL 94 (251)
Q Consensus 45 l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~-~~~-~~~~~a~~~~G~~~v~i 94 (251)
+..+..++|..+.+. ++++|+.|.|..+-. .++ -.+.-++..+|+.++.+
T Consensus 7 ~~~~l~k~A~~lV~~~~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 60 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRV 60 (418)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 456777888888774 799999999999854 333 33566778888877654
No 111
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=43.22 E-value=65 Score=21.85 Aligned_cols=49 Identities=14% Similarity=-0.057 Sum_probs=25.9
Q ss_pred CEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 65 STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 65 ~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
|.|.++.| .....-.+-.|...|...+.+.+....+++....+..+.++
T Consensus 72 Dlvii~vp-~~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~ 120 (145)
T 2duw_A 72 DMVDVFRN-SEAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSV 120 (145)
T ss_dssp SEEECCSC-STHHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEE
T ss_pred CEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEE
Confidence 44555555 33444444455556655555555555556666666555543
No 112
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=43.07 E-value=1.2e+02 Score=23.69 Aligned_cols=55 Identities=7% Similarity=0.067 Sum_probs=36.9
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC--C----CCCHHHHHHHHhh----cCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE--T----SYPPALLESVLDD----AKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~--~----~~~~~~l~~~l~~----~~~~~vi~~ 118 (251)
+++||.|.+..+....+... +...|+.++.++ . ....+++...++. .++++|+..
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 46899998887766555444 667788776665 2 2367888888874 356666654
No 113
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=42.99 E-value=1.2e+02 Score=23.94 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-----CCHHHHHHHHhhcCccEEEE
Q psy4550 60 GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~ 117 (251)
++++||.|.+..+....... ++...|+.++.++.. ...+++...++. ++++|+.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 67889998887776555443 455678766554432 367788887754 5566665
No 114
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=42.89 E-value=23 Score=27.40 Aligned_cols=82 Identities=7% Similarity=-0.022 Sum_probs=49.1
Q ss_pred eHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCHHHHHH---HHhhcCcc
Q psy4550 41 TFKQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPPALLES---VLDDAKPS 113 (251)
Q Consensus 41 T~~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~~~l~~---~l~~~~~~ 113 (251)
.+.++.++...+-..+++. .+..+.++.+..++...++.--+|+-..+.. .+++ .-++.++.. .++..+++
T Consensus 137 N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~ 214 (282)
T 3mfq_A 137 NTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQ--GVSTDSEVANSDMIETVNLIIDHNIK 214 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSS--CSSSCSCCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEeccc--ccCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3455555555555555542 3444667878888888887766665444321 1222 234555544 56677999
Q ss_pred EEEEccchhhh
Q psy4550 114 IVITKGEYMDR 124 (251)
Q Consensus 114 ~vi~~~~~~~~ 124 (251)
+||+++....+
T Consensus 215 ~if~e~~~~~~ 225 (282)
T 3mfq_A 215 AIFTESTTNPE 225 (282)
T ss_dssp EEECBTTSCTH
T ss_pred EEEEeCCCChH
Confidence 99998765443
No 115
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=42.72 E-value=1.4e+02 Score=24.36 Aligned_cols=99 Identities=9% Similarity=-0.043 Sum_probs=65.2
Q ss_pred HHHHhCCCceEEEecCCCeee----------------H--HHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHH
Q psy4550 21 NQAKRTPDKIAVVDHDGRSIT----------------F--KQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82 (251)
Q Consensus 21 ~~~~~~~~~~a~~~~~~~~~T----------------~--~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~ 82 (251)
......+-|..+.|.||.-+. + +++...+..+-..|++.|+ +++|+..|..+.+...+
T Consensus 215 ~~l~~~~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi----~laI~Snn~~~~v~~~l 290 (387)
T 3nvb_A 215 AAIQGKFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGI----IIAVCSKNNEGKAKEPF 290 (387)
T ss_dssp HHHTTCCCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTC----EEEEEEESCHHHHHHHH
T ss_pred HHHHhCCCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCC----EEEEEcCCCHHHHHHHH
Confidence 344556666666675553111 1 4677888888888888765 69999999988887777
Q ss_pred HH------HHHCCeEeeCCCCCCHHHHHHHHhhcCc---cEEEEccchhh
Q psy4550 83 AI------HKAGGGYLPLETSYPPALLESVLDDAKP---SIVITKGEYMD 123 (251)
Q Consensus 83 a~------~~~G~~~v~i~~~~~~~~l~~~l~~~~~---~~vi~~~~~~~ 123 (251)
.- -..+...+-+...-.++.+.++++..+. .+++.+++..+
T Consensus 291 ~~~~~~~l~l~~~~~v~~~~KPKp~~l~~al~~Lgl~pee~v~VGDs~~D 340 (387)
T 3nvb_A 291 ERNPEMVLKLDDIAVFVANWENKADNIRTIQRTLNIGFDSMVFLDDNPFE 340 (387)
T ss_dssp HHCTTCSSCGGGCSEEEEESSCHHHHHHHHHHHHTCCGGGEEEECSCHHH
T ss_pred hhccccccCccCccEEEeCCCCcHHHHHHHHHHhCcCcccEEEECCCHHH
Confidence 53 2245544444555556777778777664 67777776654
No 116
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=42.59 E-value=91 Score=25.73 Aligned_cols=77 Identities=12% Similarity=0.068 Sum_probs=47.3
Q ss_pred eeeHHHHHHHHHHHHH---HHHh---cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCc
Q psy4550 39 SITFKQLDEWTDIVGT---YLIN---QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKP 112 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~---~L~~---~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~ 112 (251)
.+++.+.......... .|.. .++++|++|+|....+.--..++..+...|+.++.+. .+++.+. .++..++
T Consensus 198 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~--~~~~~~~-~~~~lGa 274 (456)
T 3krt_A 198 HLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVV--SSPQKAE-ICRAMGA 274 (456)
T ss_dssp TSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHH-HHHHHTC
T ss_pred CCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEE--CCHHHHH-HHHhhCC
Confidence 3677776532222222 2322 4789999999999855544555555567788766664 2455544 4567788
Q ss_pred cEEEEc
Q psy4550 113 SIVITK 118 (251)
Q Consensus 113 ~~vi~~ 118 (251)
..++..
T Consensus 275 ~~vi~~ 280 (456)
T 3krt_A 275 EAIIDR 280 (456)
T ss_dssp CEEEET
T ss_pred cEEEec
Confidence 877753
No 117
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=42.41 E-value=53 Score=19.54 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=29.9
Q ss_pred CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 38 ~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
..+.+.++.+ .+.+.+..+++.|.++|.+......+...+...|.
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 3466666654 33444667778888888888777666666666664
No 118
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=42.30 E-value=88 Score=24.96 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=37.6
Q ss_pred HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 55 YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 55 ~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.+...++++|++|+|.....+-..++. .+...|+ .++.++. +++. ..+++..++..++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiq-lak~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQ-LARLAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHH-HHHHTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHH-HHHHcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 355568999999999987444444444 4456788 6665543 3333 34566678877764
No 119
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=42.16 E-value=70 Score=25.14 Aligned_cols=77 Identities=13% Similarity=-0.013 Sum_probs=46.5
Q ss_pred eeHHHHHHHHHHH---HHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 40 ITFKQLDEWTDIV---GTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 40 ~T~~~l~~~~~~~---a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
+++.+........ -+.|.+. ++++|++|++.....+-..++.+|-..-|+.++.++. +++.+ .+++..+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHH-HHHHHcCCCE
Confidence 6776655333221 2335553 7899999999987555666665555443666665543 34433 4556778887
Q ss_pred EEEcc
Q psy4550 115 VITKG 119 (251)
Q Consensus 115 vi~~~ 119 (251)
++...
T Consensus 220 ~i~~~ 224 (345)
T 3jv7_A 220 AVKSG 224 (345)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 77543
No 120
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=41.94 E-value=1.3e+02 Score=23.85 Aligned_cols=56 Identities=7% Similarity=-0.114 Sum_probs=40.0
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhc---CccEEEEccc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDA---KPSIVITKGE 120 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~---~~~~vi~~~~ 120 (251)
+++||.|.+..+....+. -++...|+.+++++. ...+++...++.. ++++|++...
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~ 182 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGI 182 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESB
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCC
Confidence 568999988877665553 345667888887765 5788899888765 5677776543
No 121
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=41.92 E-value=1.1e+02 Score=24.39 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=34.8
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC--CC--CCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE--TS--YPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~--~~--~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+++||.|.+..+...... ..-++...|+.++.++ +. ...+++...++..++++|+...
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 144 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH 144 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc
Confidence 568898877766433211 2334556676555443 32 3678888888755666666543
No 122
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=41.35 E-value=1.4e+02 Score=24.80 Aligned_cols=69 Identities=6% Similarity=-0.091 Sum_probs=49.8
Q ss_pred HHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHH----HC--CeEeeCCCCCC-H------HHHHHHHhhcCccEEE
Q psy4550 51 IVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHK----AG--GGYLPLETSYP-P------ALLESVLDDAKPSIVI 116 (251)
Q Consensus 51 ~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~----~G--~~~v~i~~~~~-~------~~l~~~l~~~~~~~vi 116 (251)
++...+.+.+ +.+|++|+|..+-+.|..+++..+.. .| ...+-++.... . +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4455666665 67899999999999999998887776 34 56667777665 2 3456677778887777
Q ss_pred Ecc
Q psy4550 117 TKG 119 (251)
Q Consensus 117 ~~~ 119 (251)
.+-
T Consensus 84 ~~~ 86 (464)
T 3a2k_A 84 AQI 86 (464)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
No 123
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=41.21 E-value=42 Score=21.00 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=31.5
Q ss_pred chhhhHHHHHHHHHHhCC--------------CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 10 DAEGALHYMFRNQAKRTP--------------DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~--------------~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
+...|+.+++.....++| ..+++ ..+++.+.+ ..-++.||.|+++-+
T Consensus 34 ~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v-~VNg~~v~~---------------~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 34 PEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNI-AVNGRYVSW---------------DEELKDGDVVGVFPP 94 (98)
T ss_dssp CTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEE-EETTBCCCT---------------TCBCCTTCEEEEESC
T ss_pred CCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEE-EECCEECCC---------------CCCCCCCCEEEEECC
Confidence 344688888888877765 33444 356665541 446889999999765
No 124
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=41.02 E-value=1.1e+02 Score=23.99 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=33.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC--CCC--CCHHHHHHHHhh-cCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL--ETS--YPPALLESVLDD-AKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i--~~~--~~~~~l~~~l~~-~~~~~vi~~~ 119 (251)
+++||.|.+..+...... ..-.+...|+.++.+ ++. .+.+++...++. .++++|+...
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~ 142 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCH 142 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEec
Confidence 468898877766444332 222234467655444 332 467888888864 3566666543
No 125
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=40.49 E-value=1e+02 Score=24.14 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=34.7
Q ss_pred CCCCCCEEEEEccCCHHHHHHHHH-HHHHCCeEeeCCCC------CCHHHHHHHHhhcCccEEEEc
Q psy4550 60 GCIVGSTVGVLMERCLEWTISYIA-IHKAGGGYLPLETS------YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~~~~~~a-~~~~G~~~v~i~~~------~~~~~l~~~l~~~~~~~vi~~ 118 (251)
.+++||.|.+..+....+...+.. +...|+.++.++.. ...+.+...++. ++++|+..
T Consensus 97 ~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 161 (390)
T 1elu_A 97 DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILS 161 (390)
T ss_dssp CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEE
T ss_pred CCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEe
Confidence 357899998887777666544433 34568766665532 234556555543 45666654
No 126
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=39.59 E-value=1e+02 Score=27.51 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=39.2
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC---------C-----CHHHHHHHHhhc-Ccc----EEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS---------Y-----PPALLESVLDDA-KPS----IVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~---------~-----~~~~l~~~l~~~-~~~----~vi~~~ 119 (251)
+++||.|.+--++..-.. -|+..+|+.++.+++. . +.+.+...++.. +.+ ++++++
T Consensus 232 ~~pGD~VLv~r~~H~S~~---~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p 306 (715)
T 3n75_A 232 APAGSTILIDRNCHKSLT---HLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS 306 (715)
T ss_dssp CCTTCEEEEESSCCHHHH---HHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS
T ss_pred CCCCCEEEECCCccHHHH---HHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC
Confidence 678999987766655444 3678899998888763 1 578899988764 333 566654
No 127
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=39.58 E-value=1.5e+02 Score=24.01 Aligned_cols=56 Identities=9% Similarity=-0.046 Sum_probs=35.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHH-HHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYI-AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~-a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+........+- .+...|+.++.++.. ..+.+...++. ++++|+..
T Consensus 117 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~le 173 (414)
T 3ndn_A 117 LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-DLSQWERALSV-PTQAVFFE 173 (414)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHTSS-CCSEEEEE
T ss_pred hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEEE
Confidence 6789998777665555443332 234578877777654 67777777754 56677753
No 128
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=39.52 E-value=96 Score=21.71 Aligned_cols=37 Identities=8% Similarity=-0.075 Sum_probs=21.5
Q ss_pred HHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 53 GTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 53 a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
+.+|.+.|+.+...+.|...+..+.+.++-=++++|.
T Consensus 89 ~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~ 125 (161)
T 1oft_A 89 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGR 125 (161)
T ss_dssp HHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCC
Confidence 3445555666555555555555666666666666654
No 129
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=39.50 E-value=33 Score=26.97 Aligned_cols=81 Identities=9% Similarity=0.101 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCHHHHHH---HHhhcCccE
Q psy4550 42 FKQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPPALLES---VLDDAKPSI 114 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~~~l~~---~l~~~~~~~ 114 (251)
+.++.++..++-..+++. .++...+..+...+...++.--+++-..|. ..+++ .-++.++.. .++..++++
T Consensus 172 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~ 249 (313)
T 1toa_A 172 YQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGL--QGVSTASEASAHDMQELAAFIAQRKLPA 249 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEE--ECSSCSSCCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEe--eccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 344444444444444432 344335666777888888887776654432 22333 335555544 566789999
Q ss_pred EEEccchhhh
Q psy4550 115 VITKGEYMDR 124 (251)
Q Consensus 115 vi~~~~~~~~ 124 (251)
||+++....+
T Consensus 250 If~e~~~~~~ 259 (313)
T 1toa_A 250 IFIESSIPHK 259 (313)
T ss_dssp EEEETTSCTH
T ss_pred EEEeCCCChH
Confidence 9998775443
No 130
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=39.48 E-value=1.3e+02 Score=23.68 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=36.1
Q ss_pred CCCCCCEEEEEccCCH---HHHHHHHH-HHHHCCeEeeCCCC------------CCHHHHHHHHhhcCccEEEEcc
Q psy4550 60 GCIVGSTVGVLMERCL---EWTISYIA-IHKAGGGYLPLETS------------YPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~---~~~~~~~a-~~~~G~~~v~i~~~------------~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
-+++||+|+|++|.+. +-+-.... +...|..++.-+.. ...+++...+.+-+++.|++..
T Consensus 13 ~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 88 (311)
T 1zl0_A 13 WQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLR 88 (311)
T ss_dssp CCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESC
T ss_pred cCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 4788999999998763 22222222 22346665543221 1246677777888899999854
No 131
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=39.27 E-value=67 Score=25.76 Aligned_cols=54 Identities=13% Similarity=-0.027 Sum_probs=39.1
Q ss_pred EEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 68 ~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
.+....+=--..+.+++...|..++.+-|...+......++..++++++++..+
T Consensus 96 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~ 149 (364)
T 4h27_A 96 FVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELL 149 (364)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSST
T ss_pred EEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 344444544566777788899877766666666777788889999999997654
No 132
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=38.90 E-value=1.3e+02 Score=23.74 Aligned_cols=76 Identities=12% Similarity=-0.054 Sum_probs=46.2
Q ss_pred eeeHHHHHHHHHHHHHH---H-HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIVGTY---L-INQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~---L-~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+++.+.......++.. | +..++++|++|+|....+.--..+...+...|+.++.+.. +++.+. .++..++..
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~ 215 (353)
T 4dup_A 139 GYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG--STGKCE-ACERLGAKR 215 (353)
T ss_dssp TCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHH-HHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC--CHHHHH-HHHhcCCCE
Confidence 46787765444333333 3 3358999999999966554444444555577887666542 444443 445567777
Q ss_pred EEE
Q psy4550 115 VIT 117 (251)
Q Consensus 115 vi~ 117 (251)
++.
T Consensus 216 ~~~ 218 (353)
T 4dup_A 216 GIN 218 (353)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 133
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=38.83 E-value=73 Score=24.91 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=34.9
Q ss_pred CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC----CCHHHHHHHHhhcCccEEEEc
Q psy4550 62 IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS----YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 62 ~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~l~~~l~~~~~~~vi~~ 118 (251)
++||.|.+..+..+.+...+..+...|+.++.++.. ...+++...++. ++++|+..
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 145 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQ 145 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECC
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEE
Confidence 578888887776666655554455567766555432 356777777753 45555553
No 134
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=38.69 E-value=82 Score=20.69 Aligned_cols=54 Identities=7% Similarity=-0.085 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC--CCCCCHHHHHH
Q psy4550 52 VGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL--ETSYPPALLES 105 (251)
Q Consensus 52 ~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i--~~~~~~~~l~~ 105 (251)
.+.+|.+.|+.++..+.+-..+..+.+.++-=++++|.....+ .+..+..+..+
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RR 101 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQ 101 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHH
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHH
Confidence 3567888999988888888888889999999999998744333 24555554443
No 135
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=38.40 E-value=1.2e+02 Score=23.62 Aligned_cols=51 Identities=20% Similarity=0.118 Sum_probs=34.5
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++||.|.+..+....+. .++...|+.++.++ .+.+++...++. ++++|+.
T Consensus 110 ~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~v~--~d~~~l~~~l~~-~~~~v~~ 160 (370)
T 2z61_A 110 IDDGDEVLIQNPCYPCYK---NFIRFLGAKPVFCD--FTVESLEEALSD-KTKAIII 160 (370)
T ss_dssp CCTTCEEEEESSCCTHHH---HHHHHTTCEEEEEC--SSHHHHHHHCCS-SEEEEEE
T ss_pred cCCCCEEEEeCCCchhHH---HHHHHcCCEEEEeC--CCHHHHHHhccc-CceEEEE
Confidence 467888888777665443 34566788877776 677888877754 5555554
No 136
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=38.38 E-value=82 Score=24.85 Aligned_cols=76 Identities=12% Similarity=-0.017 Sum_probs=44.9
Q ss_pred eeeHHHHHHHHHHH---HHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIV---GTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~---a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+++.+.......+ -+.++..++++|++|+|...-.+-...+.+| ...|+ .++.++. +++. ..+++..+++.
T Consensus 139 ~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~ 214 (352)
T 3fpc_A 139 EIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGS--RKHC-CDIALEYGATD 214 (352)
T ss_dssp TSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECC--CHHH-HHHHHHHTCCE
T ss_pred CCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECC--CHHH-HHHHHHhCCce
Confidence 46666654321111 1335666899999999998644444444444 56787 5665543 3333 34566778877
Q ss_pred EEEc
Q psy4550 115 VITK 118 (251)
Q Consensus 115 vi~~ 118 (251)
++..
T Consensus 215 vi~~ 218 (352)
T 3fpc_A 215 IINY 218 (352)
T ss_dssp EECG
T ss_pred EEcC
Confidence 7753
No 137
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=38.04 E-value=1.4e+02 Score=23.20 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=37.6
Q ss_pred cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 59 QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
.++++|++|++....+.--..+...+...|+.++.+.. +++.+. .++..++..++..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 37999999999995554444444445567887766643 455554 5566778777753
No 138
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=37.63 E-value=42 Score=18.32 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=15.0
Q ss_pred HHhcCCCCCCEEEEEccCC
Q psy4550 56 LINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~ 74 (251)
..++|+++||.|.+...+.
T Consensus 21 r~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 21 RQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHSCCCTTCEEEEEECSS
T ss_pred HHHcCcCCCCEEEEEEECC
Confidence 4567999999998887654
No 139
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=37.38 E-value=53 Score=25.94 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=34.8
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-----CCHHHHHHHHhhcCccEEEE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~ 117 (251)
++..++++||.|.+-.+...... .++...|+.++.++.. .+.+++...++. ++++|+.
T Consensus 68 l~~l~~~~gd~Vi~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 130 (373)
T 3frk_A 68 LKGYDIGFGDEVIVPSNTFIATA---LAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE-KTKAIIA 130 (373)
T ss_dssp HHHTTCCTTCEEEEETTSCTHHH---HHHHHHSCEEEEECEETTTTEECGGGTGGGCCT-TEEEEEE
T ss_pred HHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEeccccccCcCHHHHHHhcCC-CCeEEEE
Confidence 44556788898877766555533 3456678766655432 145666666644 5555653
No 140
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=37.35 E-value=37 Score=20.07 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
..+.+.|.++|+.+|..|-+.-.
T Consensus 25 ~~~~~rL~~lGi~~G~~v~v~~~ 47 (77)
T 3e19_A 25 HNARQKLVSMGLTPGATIQVLES 47 (77)
T ss_dssp HHHHHHHHTTTCSTTCEEEEEEC
T ss_pred HHHHHHHHHCCCCCCCEEEEEEe
Confidence 35778899999999999988754
No 141
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=37.20 E-value=84 Score=21.22 Aligned_cols=48 Identities=10% Similarity=-0.084 Sum_probs=25.3
Q ss_pred CEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 65 STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 65 ~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
|.|.++.+. ....-++-.|...|...+.+.+....+++....+..+.+
T Consensus 79 Dlvvi~vp~-~~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 79 EVVDLFVKP-KLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLI 126 (144)
T ss_dssp SEEEECSCH-HHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCE
T ss_pred CEEEEEeCH-HHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCE
Confidence 334444333 344444445666666555555555556666666666655
No 142
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=37.17 E-value=1.3e+02 Score=23.76 Aligned_cols=78 Identities=15% Similarity=0.018 Sum_probs=45.7
Q ss_pred eeeHHHHHHHHHHH---HHHHHhcCCC-CCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIV---GTYLINQGCI-VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~---a~~L~~~g~~-~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+++.+........ -+.|...+++ +|++|+|.....+-..++.+| ...|+.++.+.. +++.+....+..+++.
T Consensus 152 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla-k~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~ 228 (357)
T 2cf5_A 152 GMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISS--SNKKREEALQDLGADD 228 (357)
T ss_dssp SCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEES--STTHHHHHHTTSCCSC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeC--ChHHHHHHHHHcCCce
Confidence 46777643221111 1335566888 999999998644555555554 456886655543 3344444454777777
Q ss_pred EEEcc
Q psy4550 115 VITKG 119 (251)
Q Consensus 115 vi~~~ 119 (251)
++...
T Consensus 229 vi~~~ 233 (357)
T 2cf5_A 229 YVIGS 233 (357)
T ss_dssp EEETT
T ss_pred eeccc
Confidence 76543
No 143
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=37.12 E-value=1.5e+02 Score=23.35 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=35.9
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC--C--CCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE--T--SYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~--~--~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+....+. ..-++...|+.++.++ + ....+++...++..++++|+..
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 150 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLT 150 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 468999888777655432 2224566787655544 3 3567888888876456666653
No 144
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=36.89 E-value=1.1e+02 Score=23.98 Aligned_cols=77 Identities=14% Similarity=-0.007 Sum_probs=46.6
Q ss_pred eeeHHHHHHHHHHHHHH---H-HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIVGTY---L-INQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~---L-~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+++.+.......++.. | +..++++|++|+|....+.--..+...+...|+.++.+.. +++.+ ..++..++..
T Consensus 131 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~-~~~~~~ga~~ 207 (342)
T 4eye_A 131 QLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVN--RTAAT-EFVKSVGADI 207 (342)
T ss_dssp TSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SGGGH-HHHHHHTCSE
T ss_pred CCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC--CHHHH-HHHHhcCCcE
Confidence 47787765444433333 3 3347999999999998555444445555577887766643 23333 3444567776
Q ss_pred EEEc
Q psy4550 115 VITK 118 (251)
Q Consensus 115 vi~~ 118 (251)
++..
T Consensus 208 v~~~ 211 (342)
T 4eye_A 208 VLPL 211 (342)
T ss_dssp EEES
T ss_pred EecC
Confidence 6644
No 145
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=36.54 E-value=44 Score=26.19 Aligned_cols=81 Identities=9% Similarity=0.099 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC--CCHHH---HHHHHhhcCccE
Q psy4550 42 FKQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS--YPPAL---LESVLDDAKPSI 114 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~--~~~~~---l~~~l~~~~~~~ 114 (251)
+.++.++...+-..+++. .+....+..+..++...++.--+++-..+ ..++++. -++.+ +...++..++++
T Consensus 165 a~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~--~~~i~~~~ePs~~~l~~l~~~ik~~~v~~ 242 (307)
T 3ujp_A 165 AAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIY--MWPINAEQQFTPKQVQTVIEEVKTNNVPT 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEE--EESSCCSSCCCHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEE--eeccCCCCCCCHHHHHHHHHHHHhcCCcE
Confidence 444555555555555442 33334567777788888877766665332 2244442 34444 555666789999
Q ss_pred EEEccchhhh
Q psy4550 115 VITKGEYMDR 124 (251)
Q Consensus 115 vi~~~~~~~~ 124 (251)
||+++....+
T Consensus 243 If~e~~~~~k 252 (307)
T 3ujp_A 243 IFCESTVSDK 252 (307)
T ss_dssp EEEETTSCSH
T ss_pred EEEeCCCChH
Confidence 9998765443
No 146
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=36.29 E-value=71 Score=21.45 Aligned_cols=49 Identities=10% Similarity=-0.082 Sum_probs=32.3
Q ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 64 g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
-|.|.++.| .......+..|..+|...+.+.+....+++....+..+.+
T Consensus 70 vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 70 VDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVE 118 (138)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCE
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCE
Confidence 466666666 4555555556777777666666666667777777777665
No 147
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=36.20 E-value=1.4e+02 Score=23.46 Aligned_cols=52 Identities=6% Similarity=0.023 Sum_probs=34.4
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC--------CCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS--------YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~--------~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++||.|.+..+....+. .++...|+.++.++.. ...+++...++. +++|+.
T Consensus 111 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i 170 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSPFN---SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFIL 170 (391)
T ss_dssp SCTTCEEEECSSCCTHHH---HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEE
T ss_pred CCCCCEEEEcCCCCHHHH---HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEE
Confidence 457888877666554433 3455678877766544 467888888877 565554
No 148
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=36.13 E-value=1.6e+02 Score=23.68 Aligned_cols=56 Identities=14% Similarity=-0.030 Sum_probs=35.8
Q ss_pred CCCCCEEEEEccCCHHHHHHHH-HHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYI-AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~-a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+....+...+- ++...|+.++.++.. ..+++...++. ++++|+..
T Consensus 98 ~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~t~~v~l~ 154 (404)
T 1e5e_A 98 LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-IPGEVKKHMKP-NTKIVYFE 154 (404)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-STTHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcCC-CCcEEEEE
Confidence 4688988887776655544322 356678877777654 56677776653 56666653
No 149
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=36.12 E-value=90 Score=24.29 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=37.3
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
+....+---..+.++|...|..++.+-|...+......++..++++++++..+
T Consensus 58 v~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~ 110 (318)
T 2rkb_A 58 VCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVW 110 (318)
T ss_dssp EECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSH
T ss_pred EEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCH
Confidence 33344444556677788999877766665555667778889999999987643
No 150
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=36.03 E-value=79 Score=25.44 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-----CCHHHHHHHHhhcCccEEEE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~ 117 (251)
++..++++||.|.+..+....+. .++...|+.++.++.. ...+++...++. ++++|+.
T Consensus 74 ~~~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 136 (418)
T 2c81_A 74 LEALGIGEGDEVIVPSLTWIATA---TAVLNVNALPVFVDVEADTYCIDPQLIKSAITD-KTKAIIP 136 (418)
T ss_dssp HHHTTCCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT-TEEEECC
T ss_pred HHHcCCCCcCEEEECCCccHhHH---HHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEE
Confidence 34445678888877777655443 3445678766555432 255666665543 4555554
No 151
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=35.96 E-value=67 Score=25.23 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=31.3
Q ss_pred CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--C--CCHHHHHHHHhhcCccEEEEc
Q psy4550 62 IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--S--YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 62 ~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~--~~~~~l~~~l~~~~~~~vi~~ 118 (251)
++||.|.+..+....+......+...|+.++.++. . .+.+++...++. ++++|+..
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 145 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQ 145 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECC
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEe
Confidence 46788877766655444433333335766555443 2 356777777653 45666553
No 152
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=35.93 E-value=1.1e+02 Score=24.99 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=46.6
Q ss_pred eeeHHHHHHHHHHHHHH---HH---hcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCc
Q psy4550 39 SITFKQLDEWTDIVGTY---LI---NQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKP 112 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~---L~---~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~ 112 (251)
.+++.+........... |. ..++++|++|+|....+.-=..+...+...|+.++.+. .+++.+.. ++..++
T Consensus 190 ~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~--~~~~~~~~-~~~lGa 266 (447)
T 4a0s_A 190 HLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVV--SSAQKEAA-VRALGC 266 (447)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHH-HHHTTC
T ss_pred CCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEe--CCHHHHHH-HHhcCC
Confidence 46777765432222222 32 25799999999999855444445555557888766664 24555544 467787
Q ss_pred cEEEE
Q psy4550 113 SIVIT 117 (251)
Q Consensus 113 ~~vi~ 117 (251)
..++.
T Consensus 267 ~~~i~ 271 (447)
T 4a0s_A 267 DLVIN 271 (447)
T ss_dssp CCEEE
T ss_pred CEEEe
Confidence 77764
No 153
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=35.67 E-value=1.9e+02 Score=24.40 Aligned_cols=63 Identities=16% Similarity=-0.081 Sum_probs=45.2
Q ss_pred HHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 56 LINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 56 L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
..+.| +++|+.|.- ...+=--..+.++|...|..++.+-|...+..-...++..+++++++..
T Consensus 104 a~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 104 AEEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 33445 577887644 4445455667778888898777666666666777888999999999864
No 154
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=35.56 E-value=1.5e+02 Score=22.82 Aligned_cols=63 Identities=17% Similarity=-0.001 Sum_probs=40.2
Q ss_pred HHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 55 YLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 55 ~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
.+.+.|. ++| .| ....+=--..+.+++...|..++.+-|...+..-...++..++++++++..
T Consensus 57 ~a~~~g~~~~~-vv--~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 57 DAEKRGLLKNG-IV--EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp HHHHTTCCTTC-EE--EECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCC-EE--EECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3444553 444 33 333344445666777789987666655545566667888999999998764
No 155
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=35.22 E-value=1.2e+02 Score=23.83 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=36.0
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC--CC---CCHHHHHHHHhhcCccEEE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE--TS---YPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~--~~---~~~~~l~~~l~~~~~~~vi 116 (251)
++..++++||.|.+..+....+. .++...|+.++.++ +. ...+++...++. ++++|+
T Consensus 70 l~~l~~~~gd~Vi~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~ 131 (388)
T 1b9h_A 70 LQVMGVGPGTEVIVPAFTFISSS---QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM 131 (388)
T ss_dssp HHHTTCCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC
T ss_pred HHHcCCCCcCEEEECCCccHHHH---HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEE
Confidence 34445688999888777665553 34567787665554 32 467778777753 555655
No 156
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=35.18 E-value=1.6e+02 Score=23.12 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=35.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--C-----CCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--S-----YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~-----~~~~~l~~~l~~~~~~~vi~ 117 (251)
.++||.|.+..+....+. .++...|+.++.++. . ...+++...++..++++|+.
T Consensus 108 ~~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 108 SETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp SCTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred cCCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 357899988777655543 334567876655543 2 56888888887656777664
No 157
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=35.15 E-value=1.7e+02 Score=23.27 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=45.1
Q ss_pred eeeHHHHHHHHHHHHHH---H-HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 39 SITFKQLDEWTDIVGTY---L-INQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~---L-~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
.+++.+.......+... + +..++++|++|+|...-.+-..++.+ +...|+ .++.++..-. .+. +++..++.
T Consensus 165 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~-a~~~Ga~~Vi~~~~~~~--~~~-~a~~lGa~ 240 (378)
T 3uko_A 165 TAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEG-AKTAGASRIIGIDIDSK--KYE-TAKKFGVN 240 (378)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHH-HHHHTCSCEEEECSCTT--HHH-HHHTTTCC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHH--HHH-HHHHcCCc
Confidence 46777755433222221 3 34589999999999874444444444 456787 5666654333 333 55677887
Q ss_pred EEEEc
Q psy4550 114 IVITK 118 (251)
Q Consensus 114 ~vi~~ 118 (251)
.++..
T Consensus 241 ~vi~~ 245 (378)
T 3uko_A 241 EFVNP 245 (378)
T ss_dssp EEECG
T ss_pred EEEcc
Confidence 77754
No 158
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=35.09 E-value=71 Score=22.58 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=27.6
Q ss_pred hcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCCC
Q psy4550 58 NQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLET 96 (251)
Q Consensus 58 ~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~~ 96 (251)
...++++|+|.++++++ ...+-....+...|..++.|..
T Consensus 72 ~~~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 72 HKTLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp TCCCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 34799999999999866 4445566666666776666644
No 159
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=35.08 E-value=1.2e+02 Score=21.37 Aligned_cols=74 Identities=11% Similarity=-0.041 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHH---HHHHhhcCccEEEEccchhh
Q psy4550 48 WTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALL---ESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 48 ~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l---~~~l~~~~~~~vi~~~~~~~ 123 (251)
+...+...|.+.+ ++.++.|+++.....-.+.-.+...|..+..++...+..+- ...++..+.+++|+++....
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 108 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhc
Confidence 3444555566543 56678888876655544444455567778888876665443 33445567788887755433
No 160
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=34.79 E-value=1.2e+02 Score=24.03 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=33.3
Q ss_pred CCCCCEEEEEccCCHHHHHHHH-HHHHHCCeEeeCCC--C--CCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYI-AIHKAGGGYLPLET--S--YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~-a~~~~G~~~v~i~~--~--~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+........+. .+...|+.++.++. . ...+++...++. ++++|+..
T Consensus 115 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 176 (420)
T 1t3i_A 115 LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE-KTKLVTVV 176 (420)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT-TEEEEEEE
T ss_pred cCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC-CceEEEEe
Confidence 5678888877776655433222 33456766555543 2 356777777754 55666554
No 161
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=34.78 E-value=1.5e+02 Score=23.44 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=34.4
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-------CCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-------YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-------~~~~~l~~~l~~~~~~~vi~ 117 (251)
.++||.|.+..+....+. .++...|+.++.++.. ...+++...++..++++|+.
T Consensus 110 ~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 110 TKPGDGVIIITPVYYPFF---MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp CCTTCEEEECSSCCTHHH---HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 356888877666544433 3445668777666542 56788888887556666664
No 162
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=34.78 E-value=1.7e+02 Score=23.18 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=39.6
Q ss_pred HHHhcCCC-CCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 55 YLINQGCI-VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 55 ~L~~~g~~-~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
.|...+++ +|++|+|.....+-..++.+| ...|+.++.+.. +++.+....+..+++.++...
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFA-KAFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 35566888 999999998644444444444 457886555543 445555555577777776543
No 163
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=34.51 E-value=1.6e+02 Score=22.92 Aligned_cols=53 Identities=8% Similarity=-0.081 Sum_probs=36.3
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-------CCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-------YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-------~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++||.|.+..+....+. -++...|+.++.++.. ...+++...+ ..++++|+.
T Consensus 103 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i 162 (383)
T 3kax_A 103 TKENESVLVQPPIYPPFF---EMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLL 162 (383)
T ss_dssp CCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEE
T ss_pred CCCCCEEEEcCCCcHHHH---HHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEE
Confidence 467899887776655443 4466778887777642 5778888888 456666654
No 164
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Probab=34.41 E-value=1.2e+02 Score=21.36 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=19.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~ 59 (251)
-+||.++.+.+.++|..+.+.
T Consensus 8 l~s~~~i~~~i~~La~~I~~~ 28 (177)
T 3ohp_A 8 MISEQEVAQRIRELGQQITEH 28 (177)
T ss_dssp EECHHHHHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999876
No 165
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=34.24 E-value=1.3e+02 Score=21.68 Aligned_cols=83 Identities=7% Similarity=-0.000 Sum_probs=43.8
Q ss_pred CeeeHHHHHHHHHHHHHHHHh-------cCCCCCCEEEEEccCC----HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHH
Q psy4550 38 RSITFKQLDEWTDIVGTYLIN-------QGCIVGSTVGVLMERC----LEWTISYIAIHKAGGGYLPLETSYPPALLESV 106 (251)
Q Consensus 38 ~~~T~~~l~~~~~~~a~~L~~-------~g~~~g~~V~l~~~~~----~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~ 106 (251)
.+++..|....+..+-..+.. ..-..+-+|.+.+..+ +...++...+...|.-++-+....+.+++...
T Consensus 55 g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~ 134 (210)
T 1y80_A 55 NEMFVPEVLMSANAMNAGVEVVKQSQQAFDMPSVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEA 134 (210)
T ss_dssp ------------------------------CCCCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 346666655544444333322 1112233566665542 44555556666789999989999999999999
Q ss_pred HhhcCccEEEEccc
Q psy4550 107 LDDAKPSIVITKGE 120 (251)
Q Consensus 107 l~~~~~~~vi~~~~ 120 (251)
++..++++|..+.-
T Consensus 135 ~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 135 VKKYQPDIVGMSAL 148 (210)
T ss_dssp HHHHCCSEEEEECC
T ss_pred HHHcCCCEEEEecc
Confidence 99999999997653
No 166
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=34.16 E-value=1.4e+02 Score=23.72 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=35.8
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC--C---CCCHHHHHHHHhhcCccEEEE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE--T---SYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~--~---~~~~~~l~~~l~~~~~~~vi~ 117 (251)
++..++++||.|.+..+....+. -++...|+.++.++ + ....+++...++. ++++|+.
T Consensus 95 l~~~~~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 157 (399)
T 2oga_A 95 LRGLGIGPGDEVIVPSHTYIASW---LAVSATGATPVPVEPHEDHPTLDPLLVEKAITP-RTRALLP 157 (399)
T ss_dssp HHHTTCCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT-TEEEECC
T ss_pred HHHhCCCCcCEEEECCCccHHHH---HHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEE
Confidence 34445678999888777655433 34556787665543 3 2457777777754 5666664
No 167
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=34.10 E-value=1.6e+02 Score=22.68 Aligned_cols=64 Identities=6% Similarity=-0.100 Sum_probs=43.6
Q ss_pred HHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 55 YLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 55 ~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
.+.+.| +++|+.|.-.. .+---..+.+++...|..++.+-|...+..-...++..++++++++.
T Consensus 51 ~a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 51 EAEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 344445 46676665544 34444566677789998777766655556666788899999999985
No 168
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=33.90 E-value=1.4e+02 Score=23.72 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (251)
+++||.|.+-.+.... ..-++...|+.+++++. ...+++...++..++++|++...
T Consensus 140 ~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~~ 195 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMS---LWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDSI 195 (409)
T ss_dssp CCTTCEEEEETTSCHH---HHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEESB
T ss_pred cCCCCEEEECCCcCHH---HHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECCC
Confidence 4689988876655443 34466677888887754 56888999888766777777643
No 169
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=33.71 E-value=1e+02 Score=24.39 Aligned_cols=75 Identities=11% Similarity=-0.103 Sum_probs=45.3
Q ss_pred eeeHHHHHHHHHHHH---HHH-HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIVG---TYL-INQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a---~~L-~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+++.+......... ..| +..++++|++|+|.....+-..++ ..+...|+.++.+.. +++.+.. ++..++..
T Consensus 161 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~-qla~~~Ga~Vi~~~~--~~~~~~~-~~~lGa~~ 236 (363)
T 3uog_A 161 SLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGL-QIAKATGAEVIVTSS--SREKLDR-AFALGADH 236 (363)
T ss_dssp TSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHH-HHHHHTTCEEEEEES--CHHHHHH-HHHHTCSE
T ss_pred CCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHH-HHHHHcCCEEEEEec--CchhHHH-HHHcCCCE
Confidence 477777653322221 234 345899999999999443444444 444567887666542 3444443 56678887
Q ss_pred EEE
Q psy4550 115 VIT 117 (251)
Q Consensus 115 vi~ 117 (251)
++.
T Consensus 237 vi~ 239 (363)
T 3uog_A 237 GIN 239 (363)
T ss_dssp EEE
T ss_pred EEc
Confidence 776
No 170
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=33.18 E-value=1.8e+02 Score=22.97 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=34.8
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--C--CCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--S--YPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~--~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+++||.|.+..+..... ...-++...|+.++.++. . ...+++...++..++++|+...
T Consensus 85 ~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 146 (411)
T 3nnk_A 85 IRPGDKVLVPVFGRFGH-LLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQ 146 (411)
T ss_dssp CCTTCEEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCchHH-HHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeC
Confidence 56888887766533221 133445566765554432 2 2678888888765777777654
No 171
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=33.13 E-value=42 Score=18.64 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=18.0
Q ss_pred eHHHHHHHHHHHHHHHHhcC
Q psy4550 41 TFKQLDEWTDIVGTYLINQG 60 (251)
Q Consensus 41 T~~~l~~~~~~~a~~L~~~g 60 (251)
||.+|.++...+-..|+.+|
T Consensus 3 swaefkqrlaaiktrlqalg 22 (73)
T 2a3d_A 3 SWAEFKQRLAAIKTRLQALG 22 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999987
No 172
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=33.00 E-value=1.4e+02 Score=23.27 Aligned_cols=62 Identities=3% Similarity=-0.086 Sum_probs=38.3
Q ss_pred HHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe-EeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 54 TYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG-YLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 54 ~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~-~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
..+...++++|++|++...-+.-.+.+ ..+...|+. .+.++ .+++ -..+++..++..++...
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~ai-q~ak~~G~~~vi~~~--~~~~-k~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAI-QCAVALGAKSVTAID--ISSE-KLALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHH-HHHHHTTCSEEEEEE--SCHH-HHHHHHHTTCSEEEETT
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHH-HHHHHcCCcEEEEEe--chHH-HHHHHHHcCCeEEEeCC
Confidence 345556899999999998744444444 444556654 34443 2333 34566778888887643
No 173
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=32.87 E-value=44 Score=26.35 Aligned_cols=81 Identities=9% Similarity=0.117 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCHHHHH---HHHhhcCccE
Q psy4550 42 FKQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPPALLE---SVLDDAKPSI 114 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~~~l~---~~l~~~~~~~ 114 (251)
+.++.++...+-..+++. .+....+..+..++...++.--+|+-..| ...+++ .-++.++. ..++..++++
T Consensus 179 a~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H~af~Yfa~~yGL~~~~--~~~~~~~~eps~~~l~~l~~~ik~~~v~~ 256 (321)
T 1xvl_A 179 AAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIY--MWPINAEQQFTPKQVQTVIEEVKTNNVPT 256 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEESTTHHHHHHTTCEEEE--EESSSSSCSCCHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccCCEEEEECchHHHHHHHCCCeEEE--eeccCCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 444455555554544442 23333456677788888887777665443 223333 23455544 4567779999
Q ss_pred EEEccchhhh
Q psy4550 115 VITKGEYMDR 124 (251)
Q Consensus 115 vi~~~~~~~~ 124 (251)
||+++....+
T Consensus 257 If~e~~~~~~ 266 (321)
T 1xvl_A 257 IFCESTVSDK 266 (321)
T ss_dssp EEEETTSCSH
T ss_pred EEEeCCCChH
Confidence 9998776543
No 174
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=32.77 E-value=1.3e+02 Score=23.94 Aligned_cols=75 Identities=17% Similarity=0.047 Sum_probs=43.0
Q ss_pred eeHHHHHHHHHHH---HHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 40 ITFKQLDEWTDIV---GTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 40 ~T~~~l~~~~~~~---a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
+++.+........ -..|...++++|++|+|.....+-..++.+| ...|+.++.+.. +++.+.. ++..++..++
T Consensus 168 ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~Vi~~~~--~~~~~~~-a~~lGa~~vi 243 (369)
T 1uuf_A 168 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTT--SEAKREA-AKALGADEVV 243 (369)
T ss_dssp GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEES--SGGGHHH-HHHHTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHHH-HHHcCCcEEe
Confidence 6776643221111 1335556899999999998744455555544 456877555543 3334433 3456777766
Q ss_pred Ec
Q psy4550 117 TK 118 (251)
Q Consensus 117 ~~ 118 (251)
..
T Consensus 244 ~~ 245 (369)
T 1uuf_A 244 NS 245 (369)
T ss_dssp ET
T ss_pred cc
Confidence 43
No 175
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=32.71 E-value=45 Score=25.88 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCHHH---HHHHHhhcCccE
Q psy4550 42 FKQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPPAL---LESVLDDAKPSI 114 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~~~---l~~~l~~~~~~~ 114 (251)
+.++.++...+-..+++. .++.+.+..+..++...++.--+++-..+. ..+++ .-++.+ +...++..++++
T Consensus 158 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~yGl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~ 235 (294)
T 3hh8_A 158 LKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGVPSAYI--WEINTEEEGTPDQISSLIEKLKVIKPSA 235 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHHTCCEEEE--ESSCCSCCCCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHcCCceeec--cccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 444445555555555443 333334666777888888887777754331 22333 234444 555666779999
Q ss_pred EEEccchhh
Q psy4550 115 VITKGEYMD 123 (251)
Q Consensus 115 vi~~~~~~~ 123 (251)
||+++....
T Consensus 236 if~e~~~~~ 244 (294)
T 3hh8_A 236 LFVESSVDR 244 (294)
T ss_dssp EEEETTSCS
T ss_pred EEEeCCCCc
Confidence 999776543
No 176
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=32.64 E-value=47 Score=20.13 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCCCCCEEEEEccC
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMER 73 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~ 73 (251)
.+.+.|.++|+.+|..|-+.-..
T Consensus 26 ~~~~rL~~lGl~pG~~v~V~~~~ 48 (85)
T 3mhx_A 26 AIARRLRELGFVKGEEVRMVAKG 48 (85)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESC
T ss_pred HHHHHHHHCCCCCCCEEEEEEeC
Confidence 46677999999999999887653
No 177
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=32.51 E-value=1.4e+02 Score=23.97 Aligned_cols=55 Identities=13% Similarity=0.024 Sum_probs=33.9
Q ss_pred CCCCCEEEEEccCCHHHHHHHHH-HHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIA-IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a-~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+........+.. +...|+.++.++.. .+++...++. ++++|+..
T Consensus 92 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~i~~-~~~~v~~~ 147 (412)
T 2cb1_A 92 LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--PEAVREALSA-KTRAVFVE 147 (412)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS--HHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--HHHHHHHhcc-CCeEEEEe
Confidence 56788888777766544333322 34567777766554 7777777754 56666653
No 178
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=32.46 E-value=1.4e+02 Score=23.89 Aligned_cols=57 Identities=19% Similarity=0.035 Sum_probs=34.5
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi 116 (251)
|...++++|++|+|...-.+-.+++.+ +...|+ .++.++. +++.+. +++..++..+.
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiql-Ak~~Ga~~Vi~~~~--~~~~~~-~a~~lGa~~i~ 235 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAAS-ARLLGAAVVIVGDL--NPARLA-HAKAQGFEIAD 235 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEEES--CHHHHH-HHHHTTCEEEE
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHH-HHHCCCCeEEEEcC--CHHHHH-HHHHcCCcEEc
Confidence 445689999999998854444444444 445687 4554432 344443 44667777433
No 179
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=32.46 E-value=1.9e+02 Score=23.14 Aligned_cols=53 Identities=4% Similarity=-0.118 Sum_probs=35.6
Q ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC---CCHHHHHHHHhhcCccEEEEcc
Q psy4550 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS---YPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 64 g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~---~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
||.|.+-.|.-..+. -++...|+.+++++.. ...+++...++..++++|++.+
T Consensus 133 gd~V~v~~p~y~~~~---~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p 188 (427)
T 3ppl_A 133 TVKWICPVPGYDRHF---SITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVP 188 (427)
T ss_dssp CCEEEEEESCCHHHH---HHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECC
T ss_pred CCEEEEcCCCcHHHH---HHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECC
Confidence 899988887666544 3455678766655422 3567788888656788888653
No 180
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=32.32 E-value=1.8e+02 Score=22.72 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=35.3
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC--C--CCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE--T--SYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~--~--~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
.++||.|.+..+....+. .++...|+.++.++ . ....+++...++..++++|+..
T Consensus 113 ~~~gd~Vl~~~~~y~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 171 (369)
T 3cq5_A 113 GGPGRTALGFQPSYSMHP---ILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVT 171 (369)
T ss_dssp CSTTCEEEEEESSCTHHH---HHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEe
Confidence 357888888877665443 34566787655553 3 3457888888775466777653
No 181
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=32.25 E-value=1.5e+02 Score=22.22 Aligned_cols=74 Identities=8% Similarity=-0.086 Sum_probs=44.9
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC----CeEeeCCCCCC--HHHHHHHHhhcCcc
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG----GGYLPLETSYP--PALLESVLDDAKPS 113 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G----~~~v~i~~~~~--~~~l~~~l~~~~~~ 113 (251)
+.+.++.+ ++..+|++. .+++|++.++-+.|..++..-+..++ ...+.++...+ .+....+.+..++.
T Consensus 4 ~~~~~~~~---~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~~~~~~a~~~a~~lgi~ 77 (257)
T 2e18_A 4 LDYDKVIE---RILEFIREK---GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGIG 77 (257)
T ss_dssp ECHHHHHH---HHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCSTHHHHHHHHHHHHTCE
T ss_pred CCHHHHHH---HHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCchHHHHHHHHHHHhCCC
Confidence 34444444 455556655 35678899999999977665555553 23455554433 34455566777887
Q ss_pred EEEEcc
Q psy4550 114 IVITKG 119 (251)
Q Consensus 114 ~vi~~~ 119 (251)
..+.+-
T Consensus 78 ~~~i~i 83 (257)
T 2e18_A 78 YKVINI 83 (257)
T ss_dssp EEECCC
T ss_pred EEEEEC
Confidence 777653
No 182
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=31.97 E-value=1.9e+02 Score=22.77 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=34.0
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC--C--CCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE--T--SYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~--~--~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+..... ...-++...|+.++.++ + ....+++...++..++++|+..
T Consensus 106 ~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 166 (393)
T 1vjo_A 106 VEPGDVVLIGVAGYFGN-RLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALV 166 (393)
T ss_dssp CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEEcCChhHH-HHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEe
Confidence 46788887776644331 13334556677555544 3 2567888888865456666654
No 183
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=31.87 E-value=77 Score=23.88 Aligned_cols=40 Identities=8% Similarity=-0.142 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCC
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGG 89 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~ 89 (251)
..++..+.+.|+.+++.|.+++.... ....+.+.+...|.
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~ 107 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQ 107 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCC
Confidence 35556666667777777777777654 45555555556665
No 184
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=31.71 E-value=1.5e+02 Score=23.29 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=44.0
Q ss_pred eeeHHHHHHHHHHHH---HHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIVG---TYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a---~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+++.+..- ..-++ +.|...++++|++|+|.....+-..++.+| ...|+ .++.++. +++.+ .+++..+++.
T Consensus 145 ~l~~~~aa~-~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~--~~~~~-~~a~~lGa~~ 219 (356)
T 1pl8_A 145 NVTFEEGAL-IEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDL--SATRL-SKAKEIGADL 219 (356)
T ss_dssp TSCHHHHHH-HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCCHHHHHh-hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECC--CHHHH-HHHHHhCCCE
Confidence 367776442 22222 234455899999999998644455555544 45687 5555542 33333 3456777777
Q ss_pred EEEc
Q psy4550 115 VITK 118 (251)
Q Consensus 115 vi~~ 118 (251)
++..
T Consensus 220 vi~~ 223 (356)
T 1pl8_A 220 VLQI 223 (356)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 7653
No 185
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=31.64 E-value=1.6e+02 Score=23.06 Aligned_cols=74 Identities=15% Similarity=-0.023 Sum_probs=44.4
Q ss_pred eeeHHHHHHHHHHHHH---HH-HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIVGT---YL-INQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~---~L-~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+++.+.......... .| ...++++|++|+|....+.--..+...+...|+.++.+ .+++.+. .++..++..
T Consensus 122 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~---~~~~~~~-~~~~lGa~~ 197 (343)
T 3gaz_A 122 ALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT---ARGSDLE-YVRDLGATP 197 (343)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE---ECHHHHH-HHHHHTSEE
T ss_pred CCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE---eCHHHHH-HHHHcCCCE
Confidence 3677776433322222 23 44589999999999955544444444455778876655 3555544 456677777
Q ss_pred EE
Q psy4550 115 VI 116 (251)
Q Consensus 115 vi 116 (251)
+.
T Consensus 198 i~ 199 (343)
T 3gaz_A 198 ID 199 (343)
T ss_dssp EE
T ss_pred ec
Confidence 33
No 186
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=31.39 E-value=1.5e+02 Score=23.08 Aligned_cols=58 Identities=9% Similarity=-0.015 Sum_probs=35.3
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--C--CCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--S--YPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~--~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+++||.|.+..+...- ....-.+...|+.++.++. . ...+++...++..++++|+...
T Consensus 74 ~~~gd~vi~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 135 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFG-DRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTH 135 (384)
T ss_dssp CCTTCEEEEECSSHHH-HHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEES
T ss_pred cCCCCEEEEecCCcch-HHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 5789988776553321 1122223456776655543 2 4778899988876777777653
No 187
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=31.13 E-value=1.8e+02 Score=22.40 Aligned_cols=94 Identities=10% Similarity=-0.032 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCe
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGG 90 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~ 90 (251)
...+.++.....+.-.+.+.+.|..| ..+-.++.+.+..+...+ ++..+.+.++|.... +.-.+++..+|+.
T Consensus 155 ~~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~~~~lv~~l~~~~------~~~~i~~H~Hn~~Gla~An~laA~~aGa~ 227 (298)
T 2cw6_A 155 PAKVAEVTKKFYSMGCYEISLGDTIG-VGTPGIMKDMLSAVMQEV------PLAALAVHCHDTYGQALANTLMALQMGVS 227 (298)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTS-CCCHHHHHHHHHHHHHHS------CGGGEEEEEBCTTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCC-CcCHHHHHHHHHHHHHhC------CCCeEEEEECCCCchHHHHHHHHHHhCCC
Confidence 34566777777777888899988666 478888888877765543 244689999988766 6667888999987
Q ss_pred Ee--eCC------------CCCCHHHHHHHHhhcCc
Q psy4550 91 YL--PLE------------TSYPPALLESVLDDAKP 112 (251)
Q Consensus 91 ~v--~i~------------~~~~~~~l~~~l~~~~~ 112 (251)
.+ .++ -..+.+++...++..+.
T Consensus 228 ~vd~tv~GlG~cp~a~g~aGN~~~E~lv~~l~~~g~ 263 (298)
T 2cw6_A 228 VVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGI 263 (298)
T ss_dssp EEEEBTTSCCCCTTSCSSCCBCBHHHHHHHHHHHTC
T ss_pred EEEeecccccCCCCCCCCcCChhHHHHHHHHHhcCC
Confidence 55 233 12345677777776543
No 188
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=31.13 E-value=1.5e+02 Score=23.66 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=43.1
Q ss_pred eeeHHHHHHHHHHHH---HHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 39 SITFKQLDEWTDIVG---TYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a---~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
.+++.+.......++ ..|...+ +++|++|+|.....+-..++.+ +...|+ .++.+.. +++.+ ..++..+++
T Consensus 167 ~l~~~~~Aa~~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~--~~~~~-~~~~~lGa~ 242 (380)
T 1vj0_A 167 KDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVI-ARSLGAENVIVIAG--SPNRL-KLAEEIGAD 242 (380)
T ss_dssp TSCHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHH-HHHTTBSEEEEEES--CHHHH-HHHHHTTCS
T ss_pred CCChHHhHhhhcHHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHH-HHHcCCceEEEEcC--CHHHH-HHHHHcCCc
Confidence 367763332222222 2344557 9999999999943344444444 445684 5555542 34444 345577888
Q ss_pred EEEEc
Q psy4550 114 IVITK 118 (251)
Q Consensus 114 ~vi~~ 118 (251)
.++..
T Consensus 243 ~vi~~ 247 (380)
T 1vj0_A 243 LTLNR 247 (380)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 77754
No 189
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=30.81 E-value=1.5e+02 Score=23.49 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=32.2
Q ss_pred CCCCCEEEEEccCCHHHHHHHHH-HHHHCCeEeeCCCC-----CCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIA-IHKAGGGYLPLETS-----YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a-~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+........+.. +...|+.++.++.. ...+++...++. ++++|+..
T Consensus 110 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 172 (406)
T 3cai_A 110 AGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK-STRLVAVN 172 (406)
T ss_dssp GBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEE
T ss_pred cCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC-CceEEEEe
Confidence 56788887776655443332222 23367766555432 356777777753 55666553
No 190
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=30.68 E-value=46 Score=19.96 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCCCCEEEEEccC
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMER 73 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~ 73 (251)
.+.+.|.++|+.+|..|-+.-..
T Consensus 23 ~~~~rL~~lGl~pG~~v~V~~~~ 45 (81)
T 2k5l_A 23 ALKRRIMDMGITRGCEIYIRKVA 45 (81)
T ss_dssp HHHHHHHHHTCCTTCEEEEEEEC
T ss_pred HHHHHHHHCCCCCCCEEEEEEeC
Confidence 45577999999999999887653
No 191
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=30.64 E-value=1.9e+02 Score=22.54 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=35.2
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC--CC--CCCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL--ET--SYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i--~~--~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+++||.|.+..+... .....-++...|+.++.+ ++ ....+++...++..++++|+...
T Consensus 95 ~~~gd~vl~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 156 (393)
T 3kgw_A 95 LEPGDSFLTGTNGIW-GMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVH 156 (393)
T ss_dssp CCTTCEEEEEESSHH-HHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred CCCCCEEEEEeCCch-hHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEec
Confidence 568998887743321 112334455667655544 33 35678888888876677766544
No 192
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=30.55 E-value=77 Score=24.05 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCC
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGG 89 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~ 89 (251)
..+...+.+.|+.+++.|.+++..+.. ...+.+.+...|.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~ 112 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGV 112 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCC
Confidence 345555666666667777777766544 4444455555554
No 193
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=30.52 E-value=1.2e+02 Score=24.34 Aligned_cols=53 Identities=13% Similarity=-0.024 Sum_probs=37.6
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
+....+=--..+.++|...|..++.+-|...+..-...++..++++++++..+
T Consensus 97 v~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~ 149 (372)
T 1p5j_A 97 VCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELL 149 (372)
T ss_dssp EECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSCH
T ss_pred EEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCCH
Confidence 33344545556667788999877766665566667778889999999987643
No 194
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=30.46 E-value=2e+02 Score=22.70 Aligned_cols=91 Identities=12% Similarity=0.076 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~ 91 (251)
..+.++.....+.-.+.+.+.|..| ..+-.++.+.+..+...+ ++..+.+.++|.... +...++++.+|+..
T Consensus 169 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv~~l~~~~------p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~ 241 (337)
T 3ble_A 169 DYVKSLVEHLSKEHIERIFLPDTLG-VLSPEETFQGVDSLIQKY------PDIHFEFHGHNDYDLSVANSLQAIRAGVKG 241 (337)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTC-CCCHHHHHHHHHHHHHHC------TTSCEEEECBCTTSCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCC-CcCHHHHHHHHHHHHHhc------CCCeEEEEecCCcchHHHHHHHHHHhCCCE
Confidence 3455666666666778888887666 477777777776665443 245699999987555 66788999999876
Q ss_pred ee--CCC------CCCHHHHHHHHhhc
Q psy4550 92 LP--LET------SYPPALLESVLDDA 110 (251)
Q Consensus 92 v~--i~~------~~~~~~l~~~l~~~ 110 (251)
+= ++. ..+-+++...++..
T Consensus 242 vd~tv~GlG~~aGN~~~E~lv~~L~~~ 268 (337)
T 3ble_A 242 LHASINGLGERAGNTPLEALVTTIHDK 268 (337)
T ss_dssp EEEBGGGCSSTTCBCBHHHHHHHHHHH
T ss_pred EEEecccccccccchhHHHHHHHHHHh
Confidence 53 221 33467777777665
No 195
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=30.45 E-value=92 Score=25.47 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=39.4
Q ss_pred eeeHHHHHH-------HHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 39 SITFKQLDE-------WTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 39 ~~T~~~l~~-------~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.+.+.++.. ....+...+.+.|+.+++.|.++|..+.....+.+++..+|..
T Consensus 171 nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~ 229 (423)
T 2wlr_A 171 YIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVK 229 (423)
T ss_dssp EEEGGGTEETTTTEECCHHHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCS
T ss_pred EcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCC
Confidence 355666533 2455666777788888999999999888888888888889973
No 196
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=30.43 E-value=1.1e+02 Score=19.61 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=33.7
Q ss_pred CCcCchhhhHHHHHHHHHHhCCCceEEEecCCC---eeeHHHHHHHHHHH
Q psy4550 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGR---SITFKQLDEWTDIV 52 (251)
Q Consensus 6 ~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~---~~T~~~l~~~~~~~ 52 (251)
....+...++.+.+....+..-....+++.+|+ .+|..++.+...+.
T Consensus 77 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 77 LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence 344556778888888888777777777765554 48999888766544
No 197
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=30.33 E-value=2e+02 Score=22.61 Aligned_cols=76 Identities=14% Similarity=-0.009 Sum_probs=44.7
Q ss_pred eeeHHHHHHHHHHHHHH---H-HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTDIVGTY---L-INQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~---L-~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+++.+.......++.. | ...++++|++|+|....+.--..+...+...|+.++.+.. +++.+... +..++..
T Consensus 134 ~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~-~~~g~~~ 210 (354)
T 2j8z_A 134 GLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAG--SQKKLQMA-EKLGAAA 210 (354)
T ss_dssp TCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--CHHHHHHH-HHHTCSE
T ss_pred CCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHH-HHcCCcE
Confidence 46777754333333333 3 3358999999999986554444444445567887665543 44444443 5566766
Q ss_pred EEE
Q psy4550 115 VIT 117 (251)
Q Consensus 115 vi~ 117 (251)
++.
T Consensus 211 ~~~ 213 (354)
T 2j8z_A 211 GFN 213 (354)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 198
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=30.31 E-value=58 Score=18.41 Aligned_cols=19 Identities=5% Similarity=0.041 Sum_probs=14.6
Q ss_pred HHhcCCCCCCEEEEEccCC
Q psy4550 56 LINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~ 74 (251)
.+++|+++||.|.+...+.
T Consensus 31 R~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 31 RRTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp HHHTTCCTTCEEEEEEETT
T ss_pred HHHcCCCCCCEEEEEEECC
Confidence 3456999999998877654
No 199
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=30.04 E-value=94 Score=24.29 Aligned_cols=52 Identities=6% Similarity=0.010 Sum_probs=29.8
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC----CCHHHHHHHHhhcCccEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS----YPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~l~~~l~~~~~~~vi 116 (251)
+++||.|.+..+....+.. ++...|+.++.++.. ...+++...++. ++++|+
T Consensus 71 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~ 126 (375)
T 2fnu_A 71 SADRNEIITTPISFVATAN---MLLESGYTPVFAGIKNDGNIDELALEKLINE-RTKAIV 126 (375)
T ss_dssp CTTSCEEEECSSSCTHHHH---HHHHTTCEEEECCBCTTSSBCGGGSGGGCCT-TEEEEE
T ss_pred CCCCCEEEECCCccHhHHH---HHHHCCCEEEEeccCCCCCCCHHHHHhhcCc-CceEEE
Confidence 6788888776665544433 445578776665532 345556555543 455443
No 200
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=29.95 E-value=1.1e+02 Score=24.23 Aligned_cols=53 Identities=9% Similarity=-0.141 Sum_probs=35.9
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCC-CHHHHHHHHhhcCccEEEEccch
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSY-PPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
+....+---..+.+++...|..++.+-|.. .+..-...++..++++++++..+
T Consensus 81 v~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~~ 134 (351)
T 3aey_A 81 ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNF 134 (351)
T ss_dssp EESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCH
T ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 334444344556688889998776665554 44555568889999999987654
No 201
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=29.89 E-value=50 Score=25.43 Aligned_cols=57 Identities=7% Similarity=0.068 Sum_probs=36.9
Q ss_pred EEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCHHH---HHHHHhhcCccEEEEccchhhh
Q psy4550 66 TVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPPAL---LESVLDDAKPSIVITKGEYMDR 124 (251)
Q Consensus 66 ~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~~~---l~~~l~~~~~~~vi~~~~~~~~ 124 (251)
+..+...+...++.--+++-..|.. .+++ .-++.+ +...++..++++||+++....+
T Consensus 175 ~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~ 236 (284)
T 2prs_A 175 KGYFVFHDAYGYFEKQFGLTPLGHF--TVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPA 236 (284)
T ss_dssp CCEEEEESCCHHHHHHHTCCCCEEE--ESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSH
T ss_pred CeEEEECccHHHHHHHCCCeEeEee--ccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChH
Confidence 3456677788888888877654432 3433 334554 4455677899999998776443
No 202
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=29.80 E-value=1.2e+02 Score=24.80 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=37.4
Q ss_pred CCCCCEEEEEccCCHHHHHHHH---------HHHHHCCeEeeCCC---CCCHHHHHHHHhh-cCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYI---------AIHKAGGGYLPLET---SYPPALLESVLDD-AKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~---------a~~~~G~~~v~i~~---~~~~~~l~~~l~~-~~~~~vi~~~ 119 (251)
+++||.|.+...........++ .+...|+.+..++. ....+++...++. .++++|+...
T Consensus 113 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 113 LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 6789998776512322222222 23356888777765 2567888888875 5788888766
No 203
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=29.79 E-value=2.2e+02 Score=22.98 Aligned_cols=54 Identities=7% Similarity=-0.099 Sum_probs=39.3
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (251)
+....+=--..+.+++...|..++.+-|...+..-...++..++++++++..+.
T Consensus 116 v~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~ 169 (398)
T 4d9i_A 116 ATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYD 169 (398)
T ss_dssp EEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHH
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 334445455667778888898777666666666777788999999999987543
No 204
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=29.73 E-value=62 Score=19.62 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
..+.+.|.++|+.+|..|-+.-.
T Consensus 20 ~~~~rrL~~mGl~pG~~V~Vi~~ 42 (83)
T 2lx9_A 20 PAYRQKLLSLGMLPGSSFNVVRV 42 (83)
T ss_dssp HHHHHHHHHSSCCSSSEEEEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEe
Confidence 45667799999999999988744
No 205
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=29.67 E-value=1.7e+02 Score=22.84 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 55 YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 55 ~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
.|...++++|++|++.....+-..++.+|- ..|+.++.+.. +++.+. .++..++..++.
T Consensus 156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~~d 214 (339)
T 1rjw_A 156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAK-AMGLNVVAVDI--GDEKLE-LAKELGADLVVN 214 (339)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHH-HTTCEEEEECS--CHHHHH-HHHHTTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEeC--CHHHHH-HHHHCCCCEEec
Confidence 345558999999999998666665555554 56886665543 344444 345677776653
No 206
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=29.51 E-value=68 Score=18.73 Aligned_cols=47 Identities=11% Similarity=0.018 Sum_probs=31.2
Q ss_pred chhhhHHHHHHHHHHhCCC--ce--EEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 10 DAEGALHYMFRNQAKRTPD--KI--AVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~--~~--a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
+...|+.+++.....++|. ++ ++ ..+++.+.. +.-++.||+|.++-+
T Consensus 23 ~~~~tv~~ll~~l~~~~p~~~~v~~~v-~vNg~~v~~---------------~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 23 EQALTVQQFEDLLFERYPQINNKKFQV-AVNEEFVQK---------------SDFIQPNDTVALIPP 73 (77)
T ss_dssp SSCEEHHHHHHHHHHHCGGGTTCCCEE-EETTEEECT---------------TSEECTTCEEEEECS
T ss_pred CCCCCHHHHHHHHHHHCcchhcceEEE-EECCEECCC---------------CCCcCCCCEEEEECC
Confidence 3456888888887777653 33 44 246665553 145788999998765
No 207
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=29.48 E-value=1.7e+02 Score=23.07 Aligned_cols=76 Identities=17% Similarity=0.078 Sum_probs=43.3
Q ss_pred eeeHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDI---VGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~---~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+++.+....... .-+.|...++++|++|+|.....+-..++.+| ...|+.++.+...-. .+. .++..++..+
T Consensus 152 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qla-k~~Ga~Vi~~~~~~~--~~~-~~~~lGa~~v 227 (360)
T 1piw_A 152 NIPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSR--KRE-DAMKMGADHY 227 (360)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSST--THH-HHHHHTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHH--HHH-HHHHcCCCEE
Confidence 3677764322211 12335557899999999999944555555544 457887665543222 222 2344567766
Q ss_pred EEc
Q psy4550 116 ITK 118 (251)
Q Consensus 116 i~~ 118 (251)
+..
T Consensus 228 ~~~ 230 (360)
T 1piw_A 228 IAT 230 (360)
T ss_dssp EEG
T ss_pred EcC
Confidence 643
No 208
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=29.30 E-value=2.1e+02 Score=23.73 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=42.4
Q ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC----------------CHHHHHHHHhhcCccEEEEccchhhhhhc
Q psy4550 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY----------------PPALLESVLDDAKPSIVITKGEYMDRLER 127 (251)
Q Consensus 64 g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~----------------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (251)
|.+|+|+......+- +.-.+..+|..++.+-... ...++...++..+++++|....-....++
T Consensus 313 Gkrv~i~~~~~~~~~-l~~~L~elGm~vv~~~~~~~~~~~~~~~~~~v~~~D~~~le~~i~~~~pDllig~~~~~~~a~k 391 (458)
T 3pdi_B 313 SARTAIAADPDLLLG-FDALLRSMGAHTVAAVVPARAAALVDSPLPSVRVGDLEDLEHAARAGQAQLVIGNSHALASARR 391 (458)
T ss_dssp TCEEEEECCHHHHHH-HHHHHHTTTCEEEEEEESSCCSCCTTTTSSCEEESHHHHHHHHHHHHTCSEEEECTTHHHHHHH
T ss_pred CCEEEEECCcHHHHH-HHHHHHHCCCEEEEEEECCCChhhhhCccCcEEeCCHHHHHHHHHhcCCCEEEEChhHHHHHHH
Confidence 889999887543322 2223367888777553211 22456677778888888887665544455
Q ss_pred cCCCeee
Q psy4550 128 TSVPKVK 134 (251)
Q Consensus 128 ~~~~~~~ 134 (251)
...+.+.
T Consensus 392 ~gip~~~ 398 (458)
T 3pdi_B 392 LGVPLLR 398 (458)
T ss_dssp TTCCEEE
T ss_pred cCCCEEE
Confidence 5555443
No 209
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=29.22 E-value=47 Score=19.37 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCCCCCEEEEEccC
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMER 73 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~ 73 (251)
.+.+.|.++|+.+|..|-+.-..
T Consensus 22 ~~~~rL~~lGl~~G~~v~v~~~~ 44 (75)
T 2h3j_A 22 GYRQRLFSMGLLPGAALRVVRIA 44 (75)
T ss_dssp THHHHHHHHTCCTTCEEEEEECC
T ss_pred HHHHHHHHcCCCCCCEEEEEEEC
Confidence 34567899999999999887653
No 210
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=29.11 E-value=51 Score=25.85 Aligned_cols=79 Identities=5% Similarity=-0.044 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCHHHHHHH---HhhcCccE
Q psy4550 42 FKQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPPALLESV---LDDAKPSI 114 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~~~l~~~---l~~~~~~~ 114 (251)
+.++.++..++-..+++. .+ ++ +..+...+...++.--+++-..|.. .+++ .-++.++..+ ++..++++
T Consensus 167 ~~~~~~~L~~Ld~~~~~~l~~~-~~-~~~v~~H~af~Yfa~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 242 (312)
T 2o1e_A 167 SKEYIAKLQDLDKLYRTTAKKA-EK-KEFITQHTAFGYLAKEYGLKQVPIA--GLSPDQEPSAASLAKLKTYAKEHNVKV 242 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-SC-CEEEESSCTTHHHHHHTTCEEEECS--SCCSSSCCCHHHHHHHHHHTTSSCCCE
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-CC-CEEEEECCchHHHHHHCCCeEEEee--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 334444444444444332 23 23 4456677777777665555433321 1222 3455555554 55678999
Q ss_pred EEEccchhhh
Q psy4550 115 VITKGEYMDR 124 (251)
Q Consensus 115 vi~~~~~~~~ 124 (251)
||+++....+
T Consensus 243 If~e~~~~~~ 252 (312)
T 2o1e_A 243 IYFEEIASSK 252 (312)
T ss_dssp EECSSCCCHH
T ss_pred EEEeCCCChH
Confidence 9998776544
No 211
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=29.08 E-value=91 Score=23.45 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.+...+.+.|+.+++.|.++|..+.....+.+.+...|..
T Consensus 210 ~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~ 249 (271)
T 1e0c_A 210 DIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYP 249 (271)
T ss_dssp THHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCC
Confidence 3445566778889999999999998888888888888863
No 212
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=28.98 E-value=1.8e+02 Score=22.77 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=42.8
Q ss_pred eeeHHHHHHHHHHHH---HHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVG---TYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a---~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+++.+..-. .-++ +.++..++++|++|+|.....+-..++.+| ...|+.++.++ .+++.+ ..++..+++.+
T Consensus 142 ~~~~~~aa~~-~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~--~~~~~~-~~~~~lGa~~~ 216 (352)
T 1e3j_A 142 NVSLEEGALL-EPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTA--RSPRRL-EVAKNCGADVT 216 (352)
T ss_dssp TSCHHHHHTH-HHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEE--SCHHHH-HHHHHTTCSEE
T ss_pred CCCHHHHHhh-chHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEc--CCHHHH-HHHHHhCCCEE
Confidence 3677664421 2222 234455899999999998644455554444 45688644443 234443 34556777776
Q ss_pred EE
Q psy4550 116 IT 117 (251)
Q Consensus 116 i~ 117 (251)
+.
T Consensus 217 ~~ 218 (352)
T 1e3j_A 217 LV 218 (352)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 213
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=28.97 E-value=1.5e+02 Score=23.31 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=33.5
Q ss_pred CCCCCEEEEEccCCHHHHHHH-HHHHHHCCeEeeCCCC----CCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISY-IAIHKAGGGYLPLETS----YPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~-~a~~~~G~~~v~i~~~----~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+++||.|.+..+........+ -.+...|+.++.++.. ...+++...++. ++++|+...
T Consensus 110 ~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~ 172 (406)
T 1kmj_A 110 VRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE-KTRLLAITH 172 (406)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT-TEEEEEEES
T ss_pred CCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc-CCeEEEEeC
Confidence 567888888777654433222 2234567665554432 356778777754 566666543
No 214
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=28.78 E-value=71 Score=26.27 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=36.8
Q ss_pred CCCCCEEEEEc-cCCHHHHHHH--------HHHHHHCCeEeeCCCC----CCHHHHHHHHhh-cCccEEEEcc
Q psy4550 61 CIVGSTVGVLM-ERCLEWTISY--------IAIHKAGGGYLPLETS----YPPALLESVLDD-AKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~-~~~~~~~~~~--------~a~~~~G~~~v~i~~~----~~~~~l~~~l~~-~~~~~vi~~~ 119 (251)
+++||.|.+.. +........+ -.+...|+.+..++.. ...+++...++. .++++|+...
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 56899887665 3332222222 1234568877777653 577888888875 5778888765
No 215
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=28.76 E-value=1.8e+02 Score=23.14 Aligned_cols=52 Identities=10% Similarity=-0.096 Sum_probs=35.7
Q ss_pred CCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 62 IVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 62 ~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
++|++|+|....+ +-..++.+| ...|+.++.+. +++.+. +++..++..++..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla-~~~Ga~Vi~~~---~~~~~~-~~~~lGa~~vi~~ 215 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQML-RLSGYIPIATC---SPHNFD-LAKSRGAEEVFDY 215 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEE---CGGGHH-HHHHTTCSEEEET
T ss_pred CCCcEEEEECCCcHHHHHHHHHH-HHCCCEEEEEe---CHHHHH-HHHHcCCcEEEEC
Confidence 8999999999865 454444444 56788666552 455544 6678888887754
No 216
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=28.74 E-value=2.2e+02 Score=22.61 Aligned_cols=54 Identities=7% Similarity=0.082 Sum_probs=35.5
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC-----CCCHHHHHHHHhhc---Ccc-EEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET-----SYPPALLESVLDDA---KPS-IVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~l~~~l~~~---~~~-~vi~ 117 (251)
+++||.|.+..|.-..+. -++...|+.++.++. ....+++...++.. +.+ +++.
T Consensus 122 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~ 184 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPYR---KICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLI 184 (413)
T ss_dssp CCSSCEEEEESSCCTHHH---HHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred cCCCCEEEECCCCcccHH---HHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 468999988887655443 345667887766653 34678888888763 455 4444
No 217
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=28.73 E-value=61 Score=25.02 Aligned_cols=80 Identities=5% Similarity=0.094 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCHHH---HHHHHhhcCccE
Q psy4550 42 FKQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPPAL---LESVLDDAKPSI 114 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~~~---l~~~l~~~~~~~ 114 (251)
+.++.++..++-..+++. .+ ++. ..+...+...++.--+++-..+. ..+++ .-++.+ +...++..++++
T Consensus 156 ~~~~~~~L~~Ld~~~~~~l~~~-~~~-~~v~~H~af~Yf~~~yGl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 156 AKAFKKEAEQLTEEYTQKFKKV-RSK-TFVTQHTAFSYLAKRFGLKQLGI--SGISPEQEPSPRQLKEIQDFVKEYNVKT 231 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-SCC-EEEEEESCCHHHHHHTTCEEEEE--ECSCC---CCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCC-EEEEECCchHHHHHHCCCeEeec--cccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 455555555555555443 23 344 44667778888877666654431 22333 234444 555567789999
Q ss_pred EEEccchhhhh
Q psy4550 115 VITKGEYMDRL 125 (251)
Q Consensus 115 vi~~~~~~~~~ 125 (251)
||+++....+.
T Consensus 232 if~e~~~~~~~ 242 (286)
T 3gi1_A 232 IFAEDNVNPKI 242 (286)
T ss_dssp EEECTTSCTHH
T ss_pred EEEeCCCChHH
Confidence 99987765443
No 218
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=28.60 E-value=2.1e+02 Score=22.29 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=33.6
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--C--CCHHHHHHHHhh-cCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--S--YPPALLESVLDD-AKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~--~~~~~l~~~l~~-~~~~~vi~~ 118 (251)
+++||.|.+..+..... ...-++...|+.++.++. . ...+++...++. .++++|+..
T Consensus 92 ~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~ 153 (386)
T 2dr1_A 92 VSKGGKVLVTIIGAFGK-RYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTIT 153 (386)
T ss_dssp SCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred hcCCCeEEEEcCCchhH-HHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEE
Confidence 35788887776644321 133344566775554443 2 567888888864 356666654
No 219
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=28.34 E-value=94 Score=24.36 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=35.0
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC----CCHHHHHHHHhhcCccEEE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS----YPPALLESVLDDAKPSIVI 116 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~l~~~l~~~~~~~vi 116 (251)
++..++++||.|.+..+....+. .++...|+.++.++.. ...+++...++. ++++|+
T Consensus 70 ~~~~~~~~gd~v~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~ 130 (374)
T 3uwc_A 70 FKMLNIGAGDEVITCANTFIASV---GAIVQAGATPVLVDSENGYVIDPEKIEAAITD-KTKAIM 130 (374)
T ss_dssp HHHTTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTSSBCGGGTGGGCCT-TEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEecCCCCCcCHHHHHHhCCC-CceEEE
Confidence 44455788999888777665543 3456778776666542 245666665544 555555
No 220
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3
Probab=28.33 E-value=2.3e+02 Score=22.79 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=42.7
Q ss_pred HHHHHHhcCCCCCCEEEEEccCCHHHHHH--HHHHHHHCCeEeeCCCCCCH--HHHHHHHhhcCcc
Q psy4550 52 VGTYLINQGCIVGSTVGVLMERCLEWTIS--YIAIHKAGGGYLPLETSYPP--ALLESVLDDAKPS 113 (251)
Q Consensus 52 ~a~~L~~~g~~~g~~V~l~~~~~~~~~~~--~~a~~~~G~~~v~i~~~~~~--~~l~~~l~~~~~~ 113 (251)
+...+++.++. +|..++|.+.+-... ..||+..|+.++--.|.... ..+....++.+..
T Consensus 130 i~~~~~~~~~d---VvV~~lp~gs~~aS~~YA~Aal~ag~~fvN~~P~~~~~~P~~~el~~~~g~p 192 (367)
T 1gr0_A 130 VVQALKEAKVD---VLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIASDPVWAKKFTDARVP 192 (367)
T ss_dssp HHHHHHHTTCS---EEEECCCTTCHHHHHHHHHHHHHHTCEEEECSSCCSTTSHHHHHHHHHHTCE
T ss_pred HHHHHHHhCCc---EEEEeeeCCCcCHHHHHHHHHHHcCCceEecCCccccCCHHHHHHHHHcCCC
Confidence 56678888754 777778765444443 35788889999988886655 7888888877753
No 221
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg IONS, pyrophosphate, transition state analogue; HET: IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1dqp_A*
Probab=28.21 E-value=1.3e+02 Score=22.34 Aligned_cols=46 Identities=9% Similarity=-0.054 Sum_probs=31.2
Q ss_pred CeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHH
Q psy4550 38 RSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIA 83 (251)
Q Consensus 38 ~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a 83 (251)
.-+|+.|+.+++.++|..+.+. +-...+.|.+...++-..++..++
T Consensus 34 vlis~~~I~~~i~~LA~~I~~~~~~~~~~~vvVgi~~Gg~~~a~~La 80 (230)
T 1dqn_A 34 LLATFEECKALAADTARRMNEYYKDVAEPVTLVALLTGAYLYASLLT 80 (230)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHTTCSSCEEEEEETTTHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCHHHHHHHH
Confidence 3589999999999999999764 210024566666666655555544
No 222
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=28.10 E-value=90 Score=17.90 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=5.5
Q ss_pred CeeeHHHHHHHH
Q psy4550 38 RSITFKQLDEWT 49 (251)
Q Consensus 38 ~~~T~~~l~~~~ 49 (251)
+.++..+|..+.
T Consensus 25 ~~v~~~~L~~~l 36 (74)
T 2jwk_A 25 EGLTEEMVTQLS 36 (74)
T ss_dssp EEECHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 444554444443
No 223
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=28.07 E-value=55 Score=25.81 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=34.1
Q ss_pred HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-----CCHHHHHHHHhhcCccEEEE
Q psy4550 55 YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 55 ~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~ 117 (251)
.|...++++||.|.+-.+..... ..++...|+.++.++.. ...+++...++. ++++|+.
T Consensus 66 al~~~~~~~gd~Vi~~~~~~~~~---~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 129 (367)
T 3nyt_A 66 VQMALGVGPGDEVITPGFTYVAT---AETVALLGAKPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIP 129 (367)
T ss_dssp HHHHTTCCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCT-TEEEECC
T ss_pred HHHHhCCCCcCEEEECCCccHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCc-CCcEEEe
Confidence 34455678888887776654443 33456678766555432 245666665532 5555653
No 224
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=28.02 E-value=1.5e+02 Score=23.65 Aligned_cols=53 Identities=9% Similarity=-0.117 Sum_probs=36.0
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCC-CHHHHHHHHhhcCccEEEEccch
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSY-PPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
+....+---..+.+++...|..++.+-|.. .+..-...++..++++++++..+
T Consensus 89 v~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~ 142 (360)
T 2d1f_A 89 LCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNF 142 (360)
T ss_dssp EECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSSCH
T ss_pred EEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 333434333556688889998777766654 44555568889999999987654
No 225
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=27.98 E-value=2.2e+02 Score=22.46 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=35.9
Q ss_pred hcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 58 NQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 58 ~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
..++++|++|+|...-.+-..++.+| ...|+ .++.++. +++.+. .++..+++.++..
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~--~~~~~~-~a~~lGa~~vi~~ 243 (373)
T 1p0f_A 186 TAKVTPGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGT--HKDKFP-KAIELGATECLNP 243 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECS--CGGGHH-HHHHTTCSEEECG
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECC--CHHHHH-HHHHcCCcEEEec
Confidence 45899999999998644555555554 45687 5555543 333333 3456788777753
No 226
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=27.94 E-value=2.2e+02 Score=22.31 Aligned_cols=57 Identities=14% Similarity=-0.005 Sum_probs=33.0
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC--CC--CCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL--ET--SYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i--~~--~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+..... ...-.+...|+.++.+ ++ ....+++...++..++++|+..
T Consensus 91 ~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 151 (393)
T 2huf_A 91 LEDGDVILIGHTGHWGD-RSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLT 151 (393)
T ss_dssp CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred hCCCCEEEEECCCcchH-HHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEE
Confidence 46789887776654332 1111234467655444 33 2567888888865456666653
No 227
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=27.73 E-value=1e+02 Score=18.63 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=30.5
Q ss_pred chhhhHHHHHHHHHHhCCCc--------------eEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 10 DAEGALHYMFRNQAKRTPDK--------------IAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~--------------~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
+...|+.+++.....++|.- ..+ -.+++.+.+ +.-++.||.|+++-|
T Consensus 25 ~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v-~VN~~~v~~---------------~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 25 DGDATVGDALDALVGAHPALESRVFGDDGELYDHINV-LRNGEAAAL---------------GEATAAGDELALFPP 85 (89)
T ss_dssp CTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEE-EETTEECCT---------------TSBCCTTCEEEEECC
T ss_pred CCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEE-EECCEECCC---------------CcccCCCCEEEEECC
Confidence 34468888888888887631 223 235554442 345889999998865
No 228
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=27.66 E-value=2.6e+02 Score=23.05 Aligned_cols=57 Identities=11% Similarity=-0.145 Sum_probs=40.1
Q ss_pred EEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh
Q psy4550 67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (251)
Q Consensus 67 V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (251)
..+....+=--..+.+++...|..++.+-|...+..-...++..++++++++..+.+
T Consensus 162 ~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~ 218 (442)
T 3ss7_X 162 SIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV 218 (442)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 445555555556677778888987666655556666677788999999999876543
No 229
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=27.61 E-value=2.7e+02 Score=23.28 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=29.0
Q ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-CCHHHHHHHHhhcCccEEEEc
Q psy4550 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 64 g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-~~~~~l~~~l~~~~~~~vi~~ 118 (251)
|.+|+|+......+-++- .+..+|..++.+-.. ...+....+.+..+...++.+
T Consensus 332 GKrv~i~~~~~~~~~l~~-~L~ElGmevv~~gt~~~~~~d~~~~~~~l~~~~~i~~ 386 (483)
T 3pdi_A 332 GKRVLLYTGGVKSWSVVS-ALQDLGMKVVATGTKKSTEEDKARIRELMGDDVKMLD 386 (483)
T ss_dssp TCEEEEECSSSCHHHHHH-HHHHHTCEEEEECBSSSCHHHHHHHHHHSCSSCCBCC
T ss_pred CCEEEEECCCchHHHHHH-HHHHCCCEEEEEecCCCCHHHHHHHHHhcCCCCEEEe
Confidence 788988887654433222 347888877766433 233333344444344334433
No 230
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=27.39 E-value=43 Score=22.65 Aligned_cols=38 Identities=11% Similarity=-0.151 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550 52 VGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (251)
Q Consensus 52 ~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~ 89 (251)
+...|.+.|+.+++.|.++|..+.....+...+...|.
T Consensus 68 l~~~l~~~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~ 105 (148)
T 2fsx_A 68 LRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGI 105 (148)
T ss_dssp HHHHCC-------CCEEEECSSSSTHHHHHHHHHHTTC
T ss_pred HHHHHhhccCCCCCEEEEEcCCChhHHHHHHHHHHcCC
Confidence 33444445667777888888877665555555555554
No 231
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=27.35 E-value=2.3e+02 Score=22.46 Aligned_cols=57 Identities=12% Similarity=-0.000 Sum_probs=36.1
Q ss_pred CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC----CCHHHHHHHHhhcCccEEEEcc
Q psy4550 62 IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS----YPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 62 ~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
++||.|.+..+....+...+..+...|+.++.++.. ...+++...++. ++++|+...
T Consensus 111 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 171 (423)
T 3lvm_A 111 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD-DTILVSIMH 171 (423)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT-TEEEEECCS
T ss_pred cCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC-CcEEEEEeC
Confidence 468999887777766655554445667766555432 256778777754 556666543
No 232
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=27.32 E-value=2.4e+02 Score=22.68 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=36.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHHH-HHHHCCeEeeC-CCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIA-IHKAGGGYLPL-ETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a-~~~~G~~~v~i-~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+++||.|.+..+........+.. +...|+.++.+ +.. ..+++...++. ++++|+...
T Consensus 94 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-d~~~l~~~i~~-~~~~v~~~~ 152 (421)
T 2ctz_A 94 AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-RPEEFLALTDE-KTRAWWVES 152 (421)
T ss_dssp CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-CHHHHHHHCCT-TEEEEEEES
T ss_pred hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHhhcc-CCeEEEEEC
Confidence 46899887766665554433321 35678888877 554 67788887764 566776643
No 233
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=27.22 E-value=2.1e+02 Score=22.92 Aligned_cols=55 Identities=20% Similarity=0.120 Sum_probs=34.8
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
|...++++|++|++.....+-..++.+| ...|+ .++.++. +++.+ ..++..++.+
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~--~~~~~-~~a~~lGa~~ 233 (398)
T 2dph_A 178 CVSAGVKPGSHVYIAGAGPVGRCAAAGA-RLLGAACVIVGDQ--NPERL-KLLSDAGFET 233 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEEES--CHHHH-HHHHTTTCEE
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC--CHHHH-HHHHHcCCcE
Confidence 4556899999999998644455555554 45687 5555543 34444 3455677763
No 234
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=27.12 E-value=1.2e+02 Score=23.96 Aligned_cols=53 Identities=9% Similarity=-0.122 Sum_probs=35.8
Q ss_pred EEccCCHHHHHHHHHHHHHCCeEeeCCCCC-CHHHHHHHHhhcCccEEEEccch
Q psy4550 69 VLMERCLEWTISYIAIHKAGGGYLPLETSY-PPALLESVLDDAKPSIVITKGEY 121 (251)
Q Consensus 69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~l~~~l~~~~~~~vi~~~~~ 121 (251)
+....+---..+.+++...|..++.+-|.. .+..-...++..++++++++..+
T Consensus 83 v~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~ 136 (352)
T 2zsj_A 83 ICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTF 136 (352)
T ss_dssp EECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESSCH
T ss_pred EEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 334444344556688889998777665653 44555568889999999998654
No 235
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=27.07 E-value=2.7e+02 Score=23.00 Aligned_cols=62 Identities=16% Similarity=-0.056 Sum_probs=40.8
Q ss_pred HhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550 57 INQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 57 ~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
.+.| +++|+.|.-. ..+=--..+.+++...|..++.+-|...+.+-...++..+++++++..
T Consensus 153 ~~~G~l~~g~tVV~a-SsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~ 215 (435)
T 1jbq_A 153 ERDGTLKPGDTIIEP-TSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215 (435)
T ss_dssp HHHTCSCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC
T ss_pred HHcCCCCCCCEEEEe-CCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecC
Confidence 3445 5677765443 334344556667778998776665555555666788899999999864
No 236
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=27.02 E-value=41 Score=19.75 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
..+.+.|.++|+.+|..|-+.-.
T Consensus 20 ~~~~~rL~~lGl~pG~~v~v~~~ 42 (75)
T 2gcx_A 20 PAYRQKLLSLGMLPGSSFHVVRV 42 (75)
T ss_dssp HHHHHHHTTTTCCSSEEEEECCC
T ss_pred HHHHHHHHHCCCCCCCEEEEEEe
Confidence 34567799999999999987654
No 237
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=27.01 E-value=1.9e+02 Score=22.95 Aligned_cols=58 Identities=16% Similarity=0.032 Sum_probs=29.5
Q ss_pred CCCCCEEEEEccCCHHHHHHHHH--HHHHCCeEee--CCC---CCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIA--IHKAGGGYLP--LET---SYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a--~~~~G~~~v~--i~~---~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+.....+..... ....+...++ +++ ....+++...++..++++|+..
T Consensus 115 ~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 179 (425)
T 3ecd_A 115 AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAG 179 (425)
T ss_dssp CCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEc
Confidence 57899988877654331111111 2222334334 442 4478889998876677888775
No 238
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=26.96 E-value=2.5e+02 Score=23.24 Aligned_cols=48 Identities=21% Similarity=0.139 Sum_probs=26.5
Q ss_pred CCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCH----HHHHHHHhhcC
Q psy4550 63 VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP----ALLESVLDDAK 111 (251)
Q Consensus 63 ~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~----~~l~~~l~~~~ 111 (251)
.|.+|+|+......+-++ -.+..+|..++.+-..... +++..+++..+
T Consensus 311 ~gkrv~i~~~~~~~~~l~-~~L~elG~~vv~v~~~~~~~~~~~~~~~ll~~~~ 362 (458)
T 1mio_B 311 QGKKVALLGDPDEIIALS-KFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAG 362 (458)
T ss_dssp TTCEEEEEECHHHHHHHH-HHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTT
T ss_pred CCCEEEEEcCchHHHHHH-HHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 478999998864333222 2334788876654332232 33555566543
No 239
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=26.93 E-value=1.3e+02 Score=23.46 Aligned_cols=54 Identities=9% Similarity=-0.022 Sum_probs=35.3
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC------CCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS------YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~------~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+....+.. ++...|+.+++++.. ...+.+...++. ++++|+..
T Consensus 102 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 161 (375)
T 3op7_A 102 IEPGDHVISLYPTYQQLYD---IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-TTKMICIN 161 (375)
T ss_dssp CCTTCEEEEEESSCTHHHH---HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEE
T ss_pred cCCCCEEEEeCCCchhHHH---HHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEc
Confidence 5689999888776655443 355678766555432 367888887763 56666654
No 240
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=26.89 E-value=2.2e+02 Score=22.10 Aligned_cols=55 Identities=7% Similarity=0.010 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--C--CCHHHHHHHHhhcCccEEEE
Q psy4550 60 GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--S--YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~--~~~~~l~~~l~~~~~~~vi~ 117 (251)
+..+||.|.+..+....+ .-++...|+.++.++. . ...+++...++..++++|+.
T Consensus 119 ~~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~ 177 (397)
T 3f9t_A 119 SKNEHPKIIVPITAHFSF---EKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIG 177 (397)
T ss_dssp CCCSSCEEEEETTCCTHH---HHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEE
T ss_pred cCCCCeEEEECCcchhHH---HHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEE
Confidence 334688888777765553 3344455775555543 2 36788888887745555554
No 241
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=26.89 E-value=2.2e+02 Score=23.03 Aligned_cols=53 Identities=13% Similarity=0.084 Sum_probs=34.0
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-----CCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++||.|.+..+....+. .++...|+.++.++.. ...+.+...++. ++++|+.
T Consensus 107 ~~~gd~Vi~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 164 (437)
T 3bb8_A 107 LKPGDEVITVAAGFPTTV---NPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSD-KTKAIMI 164 (437)
T ss_dssp CCTTCEEEECSSSCHHHH---HHHHHTTCEEEECCEETTTTEECGGGHHHHCCT-TEEEEEE
T ss_pred CCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEeccCccCCcCHHHHHHhcCC-CCeEEEE
Confidence 678998887766555544 3445678877766543 256777777753 4556555
No 242
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=26.74 E-value=1e+02 Score=22.93 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH-HHHCCeEeeCCCCCCHHHHHHHHhh
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI-HKAGGGYLPLETSYPPALLESVLDD 109 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~-~~~G~~~v~i~~~~~~~~l~~~l~~ 109 (251)
..+.+.|.+++++||++|+=+.--+ -+....+|= ..-.+.+..++. +++-+..+.+.
T Consensus 64 a~i~~gl~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~--s~~~~~~l~~~ 121 (233)
T 4df3_A 64 AALLKGLIELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEF--APRVMRDLLTV 121 (233)
T ss_dssp HHHHTTCSCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEEC--CHHHHHHHHHH
T ss_pred HHHHhchhhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeC--CHHHHHHHHHh
Confidence 3344455667999999997666544 344443433 223345555653 55555544443
No 243
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, salvage of nucleosides and nucleotides; HET: GOL; 1.98A {Bacillus anthracis} SCOP: c.61.1.0
Probab=26.71 E-value=1.7e+02 Score=20.75 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=19.0
Q ss_pred eeeHHHHHHHHHHHHHHHHhc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~ 59 (251)
-+||.++.+.+.++|..+.+.
T Consensus 12 l~~~~~i~~~i~~La~~I~~~ 32 (186)
T 3o7m_A 12 LISEEQLQEKVKELALQIERD 32 (186)
T ss_dssp EECHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999875
No 244
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=26.66 E-value=79 Score=24.04 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH-HHCC
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH-KAGG 89 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~-~~G~ 89 (251)
..+...+.+.|+.+++.|.++|........+.+.+. .+|.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~ 259 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGY 259 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCC
Confidence 345566777889899999999998877766666666 6675
No 245
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=26.59 E-value=2.1e+02 Score=22.13 Aligned_cols=76 Identities=16% Similarity=0.050 Sum_probs=41.9
Q ss_pred eeeHHHHHHHHH------HHHHHHHhcCCCCCC-EEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcC
Q psy4550 39 SITFKQLDEWTD------IVGTYLINQGCIVGS-TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAK 111 (251)
Q Consensus 39 ~~T~~~l~~~~~------~~a~~L~~~g~~~g~-~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~ 111 (251)
.+++.+....-. .....+...++++|+ +|+|....+.--..+...+...|+.++.+.... +.+ ..++..+
T Consensus 119 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~--~~~-~~~~~lG 195 (330)
T 1tt7_A 119 NLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR--EAA-DYLKQLG 195 (330)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS--STH-HHHHHHT
T ss_pred CCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHH-HHHHHcC
Confidence 367776544321 111224456889997 999999855444444444456787666554432 222 2334567
Q ss_pred ccEEEE
Q psy4550 112 PSIVIT 117 (251)
Q Consensus 112 ~~~vi~ 117 (251)
++.++.
T Consensus 196 a~~v~~ 201 (330)
T 1tt7_A 196 ASEVIS 201 (330)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 777664
No 246
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=26.47 E-value=1.2e+02 Score=23.65 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=35.6
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC--CC--CCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL--ET--SYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i--~~--~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+....+. .++...|+.++.+ ++ ....+++...++..++++|+..
T Consensus 106 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYA---MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSC---HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHH---HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 567888887776554432 2344567755544 43 3467889888887677777763
No 247
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=26.23 E-value=1.2e+02 Score=23.71 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCC
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGG 89 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~ 89 (251)
..+...+.+.|+.+++.|.+++..+. ....+.+.+...|.
T Consensus 97 ~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~ 137 (318)
T 3hzu_A 97 EQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGH 137 (318)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCC
Confidence 46777888889999999999998765 55556666666776
No 248
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=26.18 E-value=6.2 Score=29.24 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=14.7
Q ss_pred ccCCCCCCceEEeccHHHH
Q psy4550 169 SSGTTGKPKGIVCPHRGAV 187 (251)
Q Consensus 169 TSGtTG~pK~v~~s~~~l~ 187 (251)
+|+-|| ||||+--++..-
T Consensus 3 ~~~~tg-pkgvi~d~~~~~ 20 (217)
T 2trc_P 3 QATHTG-PKGVINDWRKFK 20 (217)
T ss_dssp SCCSSH-HHHHHHHHHHHH
T ss_pred CCCCCC-cchHHHHHHHHH
Confidence 567788 999998888776
No 249
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=26.04 E-value=57 Score=19.85 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCCCCCEEEEEcc
Q psy4550 51 IVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
.+.+.|.+.|+.+|..|-+.-.
T Consensus 26 ~~~~rL~~mGl~pG~~V~V~~~ 47 (86)
T 2k4y_A 26 KVRRKIMDMGIVRGTEIYIEGK 47 (86)
T ss_dssp SHHHHHHHHTCCTTCEEEEEEE
T ss_pred HHHHHHHHCCCCCCCEEEEEEe
Confidence 4557799999999999988764
No 250
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=25.96 E-value=2.3e+02 Score=22.02 Aligned_cols=53 Identities=9% Similarity=-0.158 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEccCCHHHHHHHHHHHHH--CCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 60 GCIVGSTVGVLMERCLEWTISYIAIHKA--GGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~~~~~~a~~~~--G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
++ +|++|+|.....+-..++.+|- .. |+.++.+.. +++.+. .++..+++.++.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak-~~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~ 222 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILK-ALMKNITIVGISR--SKKHRD-FALELGADYVSE 222 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHH-HHCTTCEEEEECS--CHHHHH-HHHHHTCSEEEC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHH-HhcCCCEEEEEeC--CHHHHH-HHHHhCCCEEec
Confidence 78 9999999998545555555554 45 877665543 344443 345567777764
No 251
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=25.96 E-value=81 Score=23.68 Aligned_cols=37 Identities=8% Similarity=0.018 Sum_probs=28.4
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~ 76 (251)
=|+.++.+|+..+-..+.+.-...++.|+|+++...-
T Consensus 161 Es~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i 197 (264)
T 3mbk_A 161 ESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSL 197 (264)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTSCSEEEEEECTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCCeEEEEecHHHH
Confidence 4899999999988888766433457889999987643
No 252
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=25.89 E-value=93 Score=19.61 Aligned_cols=43 Identities=9% Similarity=-0.062 Sum_probs=27.8
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G 88 (251)
.+.+.++.... ...++.+++.|.+++..+.....+...+...|
T Consensus 38 ~ip~~~l~~~~-------~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G 80 (110)
T 2k0z_A 38 LISVNDQEKLA-------DFLSQHKDKKVLLHCRAGRRALDAAKSMHELG 80 (110)
T ss_dssp EEETTCHHHHH-------HHHHSCSSSCEEEECSSSHHHHHHHHHHHHTT
T ss_pred EcCHHHHHHHH-------HhcccCCCCEEEEEeCCCchHHHHHHHHHHCC
Confidence 35666665432 23356678889999988877666666665555
No 253
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=25.83 E-value=1.2e+02 Score=19.91 Aligned_cols=52 Identities=2% Similarity=-0.204 Sum_probs=34.5
Q ss_pred eeeHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 39 SITFKQLDEWT----DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 39 ~~T~~~l~~~~----~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.+.+.++.... ..+...+...++.+++.|.++|..+.....+...+...|..
T Consensus 62 nip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~ 117 (139)
T 3d1p_A 62 NVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYS 117 (139)
T ss_dssp ECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEEEECSSSHHHHHHHHHHHTTTCC
T ss_pred EcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEEEECCCCchHHHHHHHHHHcCCC
Confidence 35555554322 23444455557778899999999988877777777777753
No 254
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=25.64 E-value=2.4e+02 Score=21.95 Aligned_cols=56 Identities=13% Similarity=0.034 Sum_probs=33.2
Q ss_pred CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC---C--CCHHHHHHHHhhcCccEEEEc
Q psy4550 62 IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET---S--YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 62 ~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~---~--~~~~~l~~~l~~~~~~~vi~~ 118 (251)
++||.|.+..+...-.. ..-++...|+.++.++. . .+.+++...++..++++|+..
T Consensus 84 ~~gd~vlv~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 144 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDR-FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVT 144 (385)
T ss_dssp CSCCEEEEECSSHHHHH-HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEE
T ss_pred CCCCeEEEEcCCcchHH-HHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEE
Confidence 68998866633322221 12345567876665543 2 467888888876456666654
No 255
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=25.50 E-value=2.8e+02 Score=23.48 Aligned_cols=32 Identities=6% Similarity=-0.095 Sum_probs=18.8
Q ss_pred CCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC
Q psy4550 63 VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 63 ~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~ 95 (251)
.|.+|+|+..+...+ .+.-.+..+|..++.+-
T Consensus 363 ~GKrvaI~gd~~~~~-~la~fL~elGm~vv~v~ 394 (523)
T 3u7q_B 363 HGKRFALWGDPDFVM-GLVKFLLELGCEPVHIL 394 (523)
T ss_dssp TTCEEEEECSHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCchHHH-HHHHHHHHcCCEEEEEE
Confidence 378899986543222 22223347888777663
No 256
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=25.49 E-value=2.4e+02 Score=21.90 Aligned_cols=70 Identities=7% Similarity=-0.029 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHH----C---CeEeeCCCCCC------HHHHHHHHhhcCccE
Q psy4550 49 TDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKA----G---GGYLPLETSYP------PALLESVLDDAKPSI 114 (251)
Q Consensus 49 ~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~----G---~~~v~i~~~~~------~~~l~~~l~~~~~~~ 114 (251)
..++...+++.+ +.+|++|++..+-+.|..+++..+... | ...+.++.... .+.+..+.+..+..+
T Consensus 8 ~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~ 87 (317)
T 1wy5_A 8 IRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKI 87 (317)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcE
Confidence 344556666654 578999999999999999988877764 4 34556666553 233556667778777
Q ss_pred EEEc
Q psy4550 115 VITK 118 (251)
Q Consensus 115 vi~~ 118 (251)
.+..
T Consensus 88 ~v~~ 91 (317)
T 1wy5_A 88 FVGK 91 (317)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
No 257
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=25.28 E-value=1.3e+02 Score=24.44 Aligned_cols=58 Identities=5% Similarity=-0.019 Sum_probs=34.3
Q ss_pred CCCCCEEEEEccCCHHHHHHHH--------HHHHHCCeEeeCCCC----CCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYI--------AIHKAGGGYLPLETS----YPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~--------a~~~~G~~~v~i~~~----~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+++||.|.+...........++ .+...|+.+..++.. ...+++...++. ++++|+.+.
T Consensus 98 l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~ 167 (409)
T 3jzl_A 98 LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQR 167 (409)
T ss_dssp CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEEC
T ss_pred cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEEC
Confidence 5788888766512322222222 234567777766652 567778777754 567777654
No 258
>1zd0_A Hypothetical protein PF0523; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: d.329.1.1
Probab=25.11 E-value=1.7e+02 Score=20.15 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCCC-EEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhc
Q psy4550 52 VGTYLINQGCIVGS-TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDA 110 (251)
Q Consensus 52 ~a~~L~~~g~~~g~-~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~ 110 (251)
+...|...|+++|+ .+.++..+..+-+--+ ....|...++++. ...+.+.+..+..
T Consensus 88 Is~Alk~~Gi~~g~n~ivv~i~~~e~~~~~l--~~~i~g~~v~l~~-~d~~~iKk~~e~~ 144 (150)
T 1zd0_A 88 IKEAIKKVGAKEGENYIVTFGENASALLQKI--LSTLEIKELELER-CDLEYAKKAFEDI 144 (150)
T ss_dssp HHHHHHHHBCCSEEEEEEEESTTHHHHHHHH--HHHTTCEEECCCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCceEEEEEcCcHHHHHHH--HHHhCCeeccccc-CCHHHHHHHHHHH
Confidence 45556667888884 4444554444333222 2455778888876 5666676666543
No 259
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=24.97 E-value=2.6e+02 Score=22.16 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=35.3
Q ss_pred CCCCCEEEEEccCCHHHHHHHHH-HHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIA-IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a-~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+....+...+-. +...|..++.++.. ..+++...++. ++++|+..
T Consensus 100 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~~~~v~~~ 156 (398)
T 2rfv_A 100 CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-KPEEIRAAMRP-ETKVVYIE 156 (398)
T ss_dssp CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-SHHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhcCC-CCeEEEEE
Confidence 46788888877766555443321 25668777776653 67777777754 56666654
No 260
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=24.86 E-value=75 Score=20.05 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
.+++..|.+.+++.||++-+=..
T Consensus 52 ~~i~e~L~kekV~~GDVI~Id~~ 74 (95)
T 2cqa_A 52 TKMIESLTKDKVQAGDVITIDKA 74 (95)
T ss_dssp SHHHHHHHHTTCCTTSEEEEETT
T ss_pred HHHHHHHHHcCceeCCEEEEEcc
Confidence 46778899999999999876544
No 261
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=24.69 E-value=2.5e+02 Score=21.94 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=32.5
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC------CCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS------YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~------~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++||.|.+..+....+. .++...|+.++.++.. ...+++...++. ++++|+.
T Consensus 111 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 169 (388)
T 1j32_A 111 IEPGDEVIIPAPFWVSYP---EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP-KTKLLVF 169 (388)
T ss_dssp CCTTCEEEEESSCCTHHH---HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEE
T ss_pred cCCCCEEEEcCCCChhHH---HHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc-CceEEEE
Confidence 467888888777655443 3445677766555432 356777777754 5565554
No 262
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=24.66 E-value=2e+02 Score=22.70 Aligned_cols=78 Identities=8% Similarity=-0.009 Sum_probs=47.0
Q ss_pred eeeHHHHHHHHHHHHHH---H-HhcCCC-----CCCEEEEEc-cCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHh
Q psy4550 39 SITFKQLDEWTDIVGTY---L-INQGCI-----VGSTVGVLM-ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLD 108 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~---L-~~~g~~-----~g~~V~l~~-~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~ 108 (251)
.+++.+........... | ...+++ +|++|+|.. ...+-..++.+|-...|+.++.+.. +++.+ ..++
T Consensus 138 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~--~~~~~-~~~~ 214 (363)
T 4dvj_A 138 TLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATAS--RPETQ-EWVK 214 (363)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECS--SHHHH-HHHH
T ss_pred CCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeC--CHHHH-HHHH
Confidence 36777765433222222 3 334777 899999998 4556666666665555777666643 33433 3456
Q ss_pred hcCccEEEEcc
Q psy4550 109 DAKPSIVITKG 119 (251)
Q Consensus 109 ~~~~~~vi~~~ 119 (251)
..+++.++...
T Consensus 215 ~lGad~vi~~~ 225 (363)
T 4dvj_A 215 SLGAHHVIDHS 225 (363)
T ss_dssp HTTCSEEECTT
T ss_pred HcCCCEEEeCC
Confidence 68888887543
No 263
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=24.65 E-value=1.5e+02 Score=22.21 Aligned_cols=36 Identities=11% Similarity=-0.031 Sum_probs=27.3
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH
Q psy4550 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75 (251)
Q Consensus 40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~ 75 (251)
=|+.++.+|+.++-..+.+...++++.|+|+++...
T Consensus 170 Es~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 205 (273)
T 3d4i_A 170 ESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSSA 205 (273)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSTTCCSEEEEEECTTH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEechHH
Confidence 489999999988877766543235788999998774
No 264
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=24.60 E-value=2.1e+02 Score=22.93 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=34.0
Q ss_pred CCCCCEEEEEccCCHHHHHHHH-HHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYI-AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~-a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+........+. .+...|+.++.++.. ..+++...++. ++++|+..
T Consensus 102 ~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-d~~~l~~~i~~-~t~~v~~~ 158 (403)
T 3cog_A 102 LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS-KIKLLEAAITP-ETKLVWIE 158 (403)
T ss_dssp SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT-SHHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcCc-CCeEEEEE
Confidence 5678888777766554433222 234567777766654 56777776653 56666653
No 265
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=24.58 E-value=1.7e+02 Score=21.26 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=28.3
Q ss_pred CCCCCCEEEEEccCCHHH---HHHHH--HHHHHCCeEeeCCCCCCHHHHHHHHh
Q psy4550 60 GCIVGSTVGVLMERCLEW---TISYI--AIHKAGGGYLPLETSYPPALLESVLD 108 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~---~~~~~--a~~~~G~~~v~i~~~~~~~~l~~~l~ 108 (251)
|+.+|+.++|+.+|+.-= +-.+. ++...+...+.+....+.+.+....+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH
Confidence 899999999999998432 22222 33244544444444445555444443
No 266
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=24.44 E-value=2.4e+02 Score=21.69 Aligned_cols=77 Identities=12% Similarity=-0.020 Sum_probs=44.7
Q ss_pred eeeHHHHHHHHH---HHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550 39 SITFKQLDEWTD---IVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI 114 (251)
Q Consensus 39 ~~T~~~l~~~~~---~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 114 (251)
.+++.+...... .....+.+ .++++|++|+|....+.--..+...+...|+.++.+.. +++.+. .++..++..
T Consensus 112 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~-~~~~~Ga~~ 188 (325)
T 3jyn_A 112 SVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS--SPEKAA-HAKALGAWE 188 (325)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES--SHHHHH-HHHHHTCSE
T ss_pred CCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC--CHHHHH-HHHHcCCCE
Confidence 467777542221 12223444 47999999999985554444444445567887666543 444444 444667777
Q ss_pred EEEc
Q psy4550 115 VITK 118 (251)
Q Consensus 115 vi~~ 118 (251)
++..
T Consensus 189 ~~~~ 192 (325)
T 3jyn_A 189 TIDY 192 (325)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6653
No 267
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=24.44 E-value=2.2e+02 Score=22.20 Aligned_cols=76 Identities=9% Similarity=-0.038 Sum_probs=43.3
Q ss_pred eeeHHHHHHHHHHH---HHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIV---GTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~---a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+++.+........ -..|...++++|++|++....+.--..+...+...|+.++.+.... +.+ ..++..++..+
T Consensus 142 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~--~~~-~~~~~~g~~~~ 218 (347)
T 2hcy_A 142 GTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGE--GKE-ELFRSIGGEVF 218 (347)
T ss_dssp TCCHHHHGGGGTHHHHHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECST--THH-HHHHHTTCCEE
T ss_pred CCCHHHHHHHhhhHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCH--HHH-HHHHHcCCceE
Confidence 36777643222111 1335556899999999999865444444444456788766665432 233 33445566665
Q ss_pred EE
Q psy4550 116 IT 117 (251)
Q Consensus 116 i~ 117 (251)
+-
T Consensus 219 ~d 220 (347)
T 2hcy_A 219 ID 220 (347)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 268
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=24.37 E-value=1.6e+02 Score=23.23 Aligned_cols=37 Identities=14% Similarity=-0.129 Sum_probs=31.5
Q ss_pred cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCC
Q psy4550 59 QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE 95 (251)
Q Consensus 59 ~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~ 95 (251)
.|+.+++.|.++|..+....+.++|+..+|..-+-++
T Consensus 270 ~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lY 306 (327)
T 3utn_X 270 CTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLY 306 (327)
T ss_dssp CCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeC
Confidence 3888899999999999999999999999997544444
No 269
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=24.19 E-value=3.1e+02 Score=22.85 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~ 91 (251)
.-+.++.....+.-.+.+++.|..|. .+-.++.+.+..+...+ +-.+.+.++|.... +...++++.+|+..
T Consensus 158 e~~~~~a~~l~~~Gad~I~l~DT~G~-~~P~~v~~lv~~l~~~~-------~~~i~~H~Hnd~GlAvAN~laAv~AGa~~ 229 (464)
T 2nx9_A 158 QTWVDVAQQLAELGVDSIALKDMAGI-LTPYAAEELVSTLKKQV-------DVELHLHCHSTAGLADMTLLKAIEAGVDR 229 (464)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTSC-CCHHHHHHHHHHHHHHC-------CSCEEEEECCTTSCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCCC-cCHHHHHHHHHHHHHhc-------CCeEEEEECCCCChHHHHHHHHHHhCCCE
Confidence 45666777777777888999886664 77777777776665443 24689999887554 66889999999865
Q ss_pred ee--CC---C---CCCHHHHHHHHhhcCc
Q psy4550 92 LP--LE---T---SYPPALLESVLDDAKP 112 (251)
Q Consensus 92 v~--i~---~---~~~~~~l~~~l~~~~~ 112 (251)
+= ++ . ..+-+++...++..+.
T Consensus 230 VD~ti~g~gertGN~~lE~lv~~L~~~g~ 258 (464)
T 2nx9_A 230 VDTAISSMSGTYGHPATESLVATLQGTGY 258 (464)
T ss_dssp EEEBCGGGCSTTSCCBHHHHHHHHTTSTT
T ss_pred EEEeccccCCCCcCHHHHHHHHHHHhcCC
Confidence 42 22 2 3345777777776554
No 270
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=24.18 E-value=1e+02 Score=24.42 Aligned_cols=41 Identities=10% Similarity=-0.066 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCC
Q psy4550 49 TDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGG 89 (251)
Q Consensus 49 ~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~ 89 (251)
..+++..|.++|+.+++.|.++-..... ..-++|-+...|.
T Consensus 98 ~~~f~~~l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh 139 (327)
T 3utn_X 98 KKVFDDAMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGH 139 (327)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCC
Confidence 4689999999999999999999765532 3334555555554
No 271
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=24.09 E-value=2.8e+02 Score=22.25 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 60 GCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 60 g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
++++|++|+|.....+-..++.+| ...|+ .++.++. +++. ..+++..+++.++..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~vi~~ 265 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAIL-KHAGASKVILSEP--SEVR-RNLAKELGADHVIDP 265 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECS--CHHH-HHHHHHHTCSEEECT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECC--CHHH-HHHHHHcCCCEEEcC
Confidence 699999999998744455544444 46788 6665543 3333 345567788877754
No 272
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=24.04 E-value=2.1e+02 Score=22.92 Aligned_cols=55 Identities=13% Similarity=-0.001 Sum_probs=35.2
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-------CCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-------YPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-------~~~~~l~~~l~~~~~~~vi~~ 118 (251)
.++||.|.+..+.-..+. .++...|..++.++.. ...+++...++..++++|+..
T Consensus 140 ~~~gd~Vi~~~~~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~ 201 (421)
T 3l8a_A 140 SEKGDAVLINSPVYYPFA---RTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLC 201 (421)
T ss_dssp SCTEEEEEEEESCCHHHH---HHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCCEEEECCCCcHHHH---HHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEEC
Confidence 357888887776655433 3455567655544322 478889888876667777653
No 273
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=23.92 E-value=1.9e+02 Score=22.55 Aligned_cols=94 Identities=5% Similarity=-0.035 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCe
Q psy4550 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGG 90 (251)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~ 90 (251)
..-+.++.....+.-++.+.+.|..| ..+-.++.+.+..+...+ ++..+.+.+.|.... +.-.++++.+|+.
T Consensus 156 ~~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv~~l~~~~------~~~~l~~H~Hnd~Gla~AN~laAv~aGa~ 228 (307)
T 1ydo_A 156 IEQVIRLSEALFEFGISELSLGDTIG-AANPAQVETVLEALLARF------PANQIALHFHDTRGTALANMVTALQMGIT 228 (307)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECSSC-CCCHHHHHHHHHHHHTTS------CGGGEEEECBGGGSCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCC-CcCHHHHHHHHHHHHHhC------CCCeEEEEECCCCchHHHHHHHHHHhCCC
Confidence 34667777777777889999987666 477777777776654322 345689999887655 6678889999986
Q ss_pred EeeC--C------------CCCCHHHHHHHHhhcCc
Q psy4550 91 YLPL--E------------TSYPPALLESVLDDAKP 112 (251)
Q Consensus 91 ~v~i--~------------~~~~~~~l~~~l~~~~~ 112 (251)
.+=. + -..+-+++...++..+.
T Consensus 229 ~vd~tv~GlGecp~a~graGN~~~E~lv~~L~~~g~ 264 (307)
T 1ydo_A 229 VFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDI 264 (307)
T ss_dssp EEEEBGGGCCEETTEEEEECBCBHHHHHHHHHHTTC
T ss_pred EEEEcccccCCCCCCCCCCCChhHHHHHHHHHhcCC
Confidence 5432 1 13345777777776554
No 274
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A* 3acd_A*
Probab=23.73 E-value=2e+02 Score=20.33 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=19.7
Q ss_pred CeeeHHHHHHHHHHHHHHHHhc
Q psy4550 38 RSITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 38 ~~~T~~~l~~~~~~~a~~L~~~ 59 (251)
.-+||.++.+++.++|..+.+.
T Consensus 12 ~li~~~~i~~~i~~La~~I~~~ 33 (181)
T 2ywu_A 12 VQISAEAIKKRVEELGGEIARD 33 (181)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999874
No 275
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=23.59 E-value=2.7e+02 Score=21.96 Aligned_cols=76 Identities=9% Similarity=0.025 Sum_probs=43.5
Q ss_pred eeeHHHHHHHHHHHHH---HH-HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 39 SITFKQLDEWTDIVGT---YL-INQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~---~L-~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
.+++.+.......++. .+ +..++++|++|+|...-.+-..++.+| ...|+ .++.++. +++.+. .++..++.
T Consensus 167 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~--~~~~~~-~a~~lGa~ 242 (376)
T 1e3i_A 167 EANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDI--NGEKFP-KAKALGAT 242 (376)
T ss_dssp TCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECS--CGGGHH-HHHHTTCS
T ss_pred CCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcC--CHHHHH-HHHHhCCc
Confidence 4677775433222221 13 345899999999998644444444444 45687 5555543 333333 34567777
Q ss_pred EEEEc
Q psy4550 114 IVITK 118 (251)
Q Consensus 114 ~vi~~ 118 (251)
.++..
T Consensus 243 ~vi~~ 247 (376)
T 1e3i_A 243 DCLNP 247 (376)
T ss_dssp EEECG
T ss_pred EEEcc
Confidence 77743
No 276
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=23.57 E-value=70 Score=18.17 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=32.9
Q ss_pred chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72 (251)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~ 72 (251)
+...|+.+++.+.. ..+..+++ ..+++.+...+. ...-++.||+|.++-+
T Consensus 13 ~~~~tv~~ll~~l~-~~~~~v~v-avN~~~v~~~~~-----------~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 13 AAGQTVHELLEQLD-QRQAGAAL-AINQQIVPREQW-----------AQHIVQDGDQILLFQV 62 (66)
T ss_dssp CTTCCHHHHHHHHT-CCCSSEEE-EETTEEECHHHH-----------TTCCCCTTEEECEEES
T ss_pred CCCCcHHHHHHHcC-CCCCCEEE-EECCEECCchhc-----------CCcCCCCCCEEEEEee
Confidence 44568888888763 44666765 367776655442 2334788999988754
No 277
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.43 E-value=2.4e+02 Score=21.19 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=59.7
Q ss_pred CCCeeeHHHHHHHHHHHHHHHHhc--CC----CCCCEEEEEccCC----HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH
Q psy4550 36 DGRSITFKQLDEWTDIVGTYLINQ--GC----IVGSTVGVLMERC----LEWTISYIAIHKAGGGYLPLETSYPPALLES 105 (251)
Q Consensus 36 ~~~~~T~~~l~~~~~~~a~~L~~~--g~----~~g~~V~l~~~~~----~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~ 105 (251)
...+++..|.+..+..+-..+... -+ ..+-+|.+.+..+ +...++...+...|.-++-+.+..+++++..
T Consensus 89 ~~g~~~v~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~ 168 (258)
T 2i2x_B 89 DEGVIFLPNVMMSADAMLEGIEYCKENSGATPKTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLA 168 (258)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHTTTSSCCCCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 334688888888777777666421 11 2344666666543 4455555666788988888888899999999
Q ss_pred HHhhcCccEEEEcc
Q psy4550 106 VLDDAKPSIVITKG 119 (251)
Q Consensus 106 ~l~~~~~~~vi~~~ 119 (251)
.++..++++|..+.
T Consensus 169 ~~~~~~~d~V~lS~ 182 (258)
T 2i2x_B 169 AVQKEKPIMLTGTA 182 (258)
T ss_dssp HHHHHCCSEEEEEC
T ss_pred HHHHcCCCEEEEEe
Confidence 99999999998764
No 278
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=23.23 E-value=1.8e+02 Score=22.14 Aligned_cols=76 Identities=14% Similarity=-0.018 Sum_probs=43.4
Q ss_pred eeeHHHHHHHHHHHHH---HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 39 SITFKQLDEWTDIVGT---YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~---~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
.+++.+.......++. .|.+.++++|++|++....+.--..+...+...|+.++.+.. +++.+. .++..++..+
T Consensus 98 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~ 174 (302)
T 1iz0_A 98 GLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS--RPEKLA-LPLALGAEEA 174 (302)
T ss_dssp TCCHHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES--SGGGSH-HHHHTTCSEE
T ss_pred CCCHHHHHHhhhHHHHHHHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC--CHHHHH-HHHhcCCCEE
Confidence 4778775433333322 244345899999999998554444444444567886665543 233333 2345677766
Q ss_pred EE
Q psy4550 116 IT 117 (251)
Q Consensus 116 i~ 117 (251)
+.
T Consensus 175 ~~ 176 (302)
T 1iz0_A 175 AT 176 (302)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 279
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=23.11 E-value=1.6e+02 Score=23.21 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=37.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhc-----CccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDA-----KPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~-----~~~~vi~~~ 119 (251)
+++||.|.+-.+....+ .-++...|+.+++++. ...+.+...++.. ++++|+...
T Consensus 124 ~~~gd~v~~~~~~~~~~---~~~~~~~g~~~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~ 183 (399)
T 3tqx_A 124 LGPEDAIISDELNHASI---IDGIRLCKAQRYRYKN-NAMGDLEAKLKEADEKGARFKLIATDG 183 (399)
T ss_dssp CCTTCEEEEETTCCHHH---HHHHHSCCSEEEEECT-TCTTHHHHHHHHHHTTTCSSEEEEEES
T ss_pred cCCCCEEEECCcccHHH---HHHHHHcCCceeEeCC-CCHHHHHHHHHhhhccCCCceEEEEeC
Confidence 46789888877766553 3356667887777654 4567888888764 677777655
No 280
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=23.01 E-value=1.1e+02 Score=24.30 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=30.2
Q ss_pred HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC-----CCHHHHHHHHhhcCccEEEE
Q psy4550 57 INQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 57 ~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~ 117 (251)
...++++||+|.+..+....+ ..++...|+.++.++.. ...+.+...++. ++++|+.
T Consensus 89 ~~~~~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~ 150 (391)
T 3dr4_A 89 VAMGIGPGDEVIVPSLTYIAS---ANSVTYCGATPVLVDNDPRTFNLDAAKLEALITP-RTKAIMP 150 (391)
T ss_dssp HHHTCCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCT-TEEEECC
T ss_pred HHcCCCCcCEEEECCCchHHH---HHHHHHCCCEEEEEecCccccCcCHHHHHHhcCC-CceEEEE
Confidence 333567788877776655444 33445667665554322 244555555432 4455553
No 281
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=22.95 E-value=1.8e+02 Score=21.06 Aligned_cols=54 Identities=9% Similarity=-0.127 Sum_probs=34.5
Q ss_pred hcCCCCCCEEEEEccCCHH--HHH--HHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcC
Q psy4550 58 NQGCIVGSTVGVLMERCLE--WTI--SYIAIHKAGGGYLPLETSYPPALLESVLDDAK 111 (251)
Q Consensus 58 ~~g~~~g~~V~l~~~~~~~--~~~--~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~ 111 (251)
..|+.+|+.+++..+++.- .++ ....+...|..++-++...+.+++...+...+
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g 74 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFG 74 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTT
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcC
Confidence 3489999999999998832 222 22333344656666666667777766665443
No 282
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=22.75 E-value=1.4e+02 Score=19.59 Aligned_cols=49 Identities=14% Similarity=-0.008 Sum_probs=31.2
Q ss_pred EEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550 67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV 115 (251)
Q Consensus 67 V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 115 (251)
+++++-+.....-.+=.|...|...+.+.+....+++....+..+.+++
T Consensus 61 lavi~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 61 TVTLYINPQNQLSEYNYILSLKPKRVIFNPGTENEELEEILSENGIEPV 109 (122)
T ss_dssp EEEECSCHHHHGGGHHHHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEE
T ss_pred EEEEEeCHHHHHHHHHHHHhcCCCEEEECCCCChHHHHHHHHHcCCeEE
Confidence 3444444445555555666777666667776667777777777777655
No 283
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=22.75 E-value=2.5e+02 Score=21.20 Aligned_cols=47 Identities=9% Similarity=0.023 Sum_probs=29.7
Q ss_pred CCCEEEEEccCCHHHHHHHHHHH-H-HCCeEeeCCCCCCHHHHHHHHhhc
Q psy4550 63 VGSTVGVLMERCLEWTISYIAIH-K-AGGGYLPLETSYPPALLESVLDDA 110 (251)
Q Consensus 63 ~g~~V~l~~~~~~~~~~~~~a~~-~-~G~~~v~i~~~~~~~~l~~~l~~~ 110 (251)
+|++|.|++... ..+-.+-..+ . .|..+..++...+.++-..+++..
T Consensus 111 ~~~kvlIFs~~~-~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F 159 (271)
T 1z5z_A 111 EGDKIAIFTQFV-DMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF 159 (271)
T ss_dssp TTCCEEEEESCH-HHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEeccH-HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHh
Confidence 477888888654 3333333333 3 388888888888876666666554
No 284
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=22.69 E-value=1.5e+02 Score=23.58 Aligned_cols=59 Identities=5% Similarity=-0.095 Sum_probs=30.5
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHH--HCCeEeeCCC----CCCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHK--AGGGYLPLET----SYPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~--~G~~~v~i~~----~~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+++||.|.+..+....+......+.. .+..+++++. ....+++...++..++++|+...
T Consensus 108 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 172 (417)
T 3n0l_A 108 INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGA 172 (417)
T ss_dssp SCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECC
T ss_pred cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECC
Confidence 56899998887755433221112222 3343444332 25678898888766778888654
No 285
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=22.61 E-value=3.2e+02 Score=24.36 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=32.3
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCC---------C-----CHHHHHHHHhh
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS---------Y-----PPALLESVLDD 109 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~---------~-----~~~~l~~~l~~ 109 (251)
+++||.|.+--+....+.. ++...|+.++.+++. . +.+.+...++.
T Consensus 242 ~~~GD~Vlv~~~~h~s~~~---~~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~ 301 (755)
T 2vyc_A 242 MTDNDVVVVDRNCHKSIEQ---GLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISE 301 (755)
T ss_dssp CCTTCEEEEESSCCHHHHH---HHHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHH
T ss_pred cCCCCEEEECCCchHHHHH---HHHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHh
Confidence 5689999887776554433 356789987776543 2 67888888865
No 286
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=22.50 E-value=2.3e+02 Score=22.37 Aligned_cols=55 Identities=11% Similarity=-0.001 Sum_probs=35.7
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhc-----CccEEEEcc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDA-----KPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~-----~~~~vi~~~ 119 (251)
.++||.|.+-.+....+ .-++...|+.+++++ ....+.+...++.. ++++|+...
T Consensus 126 ~~~gd~v~~~~~~~~~~---~~~~~~~g~~~~~~~-~~d~~~l~~~l~~~~~~~~~~~~v~~~~ 185 (401)
T 1fc4_A 126 LGAEDAIISDALNHASI---IDGVRLCKAKRYRYA-NNDMQELEARLKEAREAGARHVLIATDG 185 (401)
T ss_dssp CCTTCEEEEETTCCHHH---HHHHHTSCSEEEEEC-TTCHHHHHHHHHHHHHTTCSSEEEEEES
T ss_pred cCCCCEEEEcchhHHHH---HHHHHHcCCceEEEC-CCCHHHHHHHHHHhhccCCCceEEEEeC
Confidence 46788887766655433 235667788887775 34678888888653 566666643
No 287
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=22.12 E-value=2.7e+02 Score=21.71 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=34.7
Q ss_pred HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
|...++ +|++|+|.....+-..++.+ +...|+ .++.+.. +++.+ ..++..++..++.
T Consensus 161 l~~~~~-~g~~VlV~GaG~vG~~~~q~-a~~~Ga~~Vi~~~~--~~~~~-~~~~~~Ga~~~~~ 218 (348)
T 2d8a_A 161 VLAGPI-SGKSVLITGAGPLGLLGIAV-AKASGAYPVIVSEP--SDFRR-ELAKKVGADYVIN 218 (348)
T ss_dssp HTTSCC-TTCCEEEECCSHHHHHHHHH-HHHTTCCSEEEECS--CHHHH-HHHHHHTCSEEEC
T ss_pred HHhcCC-CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECC--CHHHH-HHHHHhCCCEEEC
Confidence 444578 99999999994344444444 445687 5555543 34433 3445667776664
No 288
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=21.93 E-value=3e+02 Score=21.74 Aligned_cols=76 Identities=16% Similarity=0.052 Sum_probs=43.3
Q ss_pred eeeHHHHHHHHHHHHH---HH-HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 39 SITFKQLDEWTDIVGT---YL-INQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~---~L-~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
.+++.+.......++. .+ +..++++|++|+|.....+-..++.+ +...|+ .++.++. +++.+. .++..+++
T Consensus 164 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~ql-a~~~Ga~~Vi~~~~--~~~~~~-~~~~lGa~ 239 (374)
T 1cdo_A 164 SAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMG-CHSAGAKRIIAVDL--NPDKFE-KAKVFGAT 239 (374)
T ss_dssp TCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECS--CGGGHH-HHHHTTCC
T ss_pred CCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEEcC--CHHHHH-HHHHhCCc
Confidence 4677765443222221 13 34589999999999864444444444 445787 5555543 333333 34567777
Q ss_pred EEEEc
Q psy4550 114 IVITK 118 (251)
Q Consensus 114 ~vi~~ 118 (251)
.++..
T Consensus 240 ~vi~~ 244 (374)
T 1cdo_A 240 DFVNP 244 (374)
T ss_dssp EEECG
T ss_pred eEEec
Confidence 77643
No 289
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=21.86 E-value=1.1e+02 Score=25.16 Aligned_cols=58 Identities=5% Similarity=-0.013 Sum_probs=35.0
Q ss_pred CCCCCEEEEEc-cCCHHHHHHH-------HHHHHHCCeEeeCCCC----CCHHHHHHHHhhcCccEEEEcc
Q psy4550 61 CIVGSTVGVLM-ERCLEWTISY-------IAIHKAGGGYLPLETS----YPPALLESVLDDAKPSIVITKG 119 (251)
Q Consensus 61 ~~~g~~V~l~~-~~~~~~~~~~-------~a~~~~G~~~v~i~~~----~~~~~l~~~l~~~~~~~vi~~~ 119 (251)
+++||.|.+.. +....+...+ -.+...|+.++.++.. ...+++...++. ++++|+...
T Consensus 104 ~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~ 173 (431)
T 3ht4_A 104 LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQR 173 (431)
T ss_dssp CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT-TEEEEEEEC
T ss_pred CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEEC
Confidence 67899887765 3333222211 1223467777777653 467888888864 677777663
No 290
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=21.76 E-value=2.4e+02 Score=21.88 Aligned_cols=76 Identities=9% Similarity=-0.118 Sum_probs=44.0
Q ss_pred eeeHHHHHH---HHHHHHHHH-HhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 39 SITFKQLDE---WTDIVGTYL-INQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 39 ~~T~~~l~~---~~~~~a~~L-~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
.+++.+... ........+ +..++++|++|+|....+ +-..++.+| ...|+.++.+..... .+. .++..++.
T Consensus 116 ~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~--~~~-~~~~lga~ 191 (340)
T 3gms_A 116 SIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNNK--HTE-ELLRLGAA 191 (340)
T ss_dssp TSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSST--THH-HHHHHTCS
T ss_pred CCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHH--HHH-HHHhCCCc
Confidence 467777542 111122223 445899999999998874 555555544 567887776654322 222 33446777
Q ss_pred EEEEc
Q psy4550 114 IVITK 118 (251)
Q Consensus 114 ~vi~~ 118 (251)
.++..
T Consensus 192 ~~~~~ 196 (340)
T 3gms_A 192 YVIDT 196 (340)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 66643
No 291
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=21.73 E-value=57 Score=25.24 Aligned_cols=79 Identities=4% Similarity=-0.051 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH---HHhhcCccEEE
Q psy4550 42 FKQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLES---VLDDAKPSIVI 116 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~---~l~~~~~~~vi 116 (251)
+.++.++..++-..+++. .+ ++ +..+...+...++.--+++-..|... ....-++.++.. .++..++++||
T Consensus 167 ~~~~~~~L~~Ld~~~~~~l~~~-~~-~~~v~~H~af~Yf~~~yGl~~~~~~~--~~~eps~~~l~~l~~~ik~~~v~~If 242 (291)
T 1pq4_A 167 LAAFLAELERLNQELGQILQPL-PQ-RKFIVFHPSWAYFARDYNLVQIPIEV--EGQEPSAQELKQLIDTAKENNLTMVF 242 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-SC-CEEEESSCCCHHHHHHTTCEEEESCB--TTBCCCHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CC-CEEEEECCchHHHHHHCCCEEeeccc--CCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 344444444444444432 23 23 44567788888887766665444321 122345555555 45667899999
Q ss_pred Eccchhhh
Q psy4550 117 TKGEYMDR 124 (251)
Q Consensus 117 ~~~~~~~~ 124 (251)
+++....+
T Consensus 243 ~e~~~~~~ 250 (291)
T 1pq4_A 243 GETQFSTK 250 (291)
T ss_dssp EETTSCCH
T ss_pred EeCCCChH
Confidence 98766544
No 292
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=21.52 E-value=3.8e+02 Score=22.88 Aligned_cols=93 Identities=10% Similarity=0.071 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeE
Q psy4550 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGY 91 (251)
Q Consensus 13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~ 91 (251)
.-+.++.....+.-++.+.+.|..| ..+-.++.+.+..+...+- ++..+.+.++|.... +...++++.+|+..
T Consensus 175 e~~~~~a~~l~~~Gad~I~L~DT~G-~~~P~~v~~lv~~l~~~~p-----~~i~I~~H~Hnd~GlAvAN~laAveAGa~~ 248 (539)
T 1rqb_A 175 EGYVKLAGQLLDMGADSIALKDMAA-LLKPQPAYDIIKAIKDTYG-----QKTQINLHCHSTTGVTEVSLMKAIEAGVDV 248 (539)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTC-CCCHHHHHHHHHHHHHHHC-----TTCCEEEEEBCTTSCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCC-CcCHHHHHHHHHHHHHhcC-----CCceEEEEeCCCCChHHHHHHHHHHhCCCE
Confidence 3456666666777788888988666 4777777777776655442 345789999887554 66789999999865
Q ss_pred ee--CC---C---CCCHHHHHHHHhhcC
Q psy4550 92 LP--LE---T---SYPPALLESVLDDAK 111 (251)
Q Consensus 92 v~--i~---~---~~~~~~l~~~l~~~~ 111 (251)
+= ++ . ..+-+++...|+..+
T Consensus 249 VD~ti~g~GertGN~~lE~lv~~L~~~g 276 (539)
T 1rqb_A 249 VDTAISSMSLGPGHNPTESVAEMLEGTG 276 (539)
T ss_dssp EEEBCGGGCSTTSBCBHHHHHHHTTTSS
T ss_pred EEEeccccCCCccChhHHHHHHHHHhcC
Confidence 42 22 2 223566666666544
No 293
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=21.38 E-value=2e+02 Score=19.68 Aligned_cols=69 Identities=7% Similarity=-0.033 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhh---cCccEEEEccch
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDD---AKPSIVITKGEY 121 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~---~~~~~vi~~~~~ 121 (251)
..+...|... ++.++.|+++.....-.+.-.+...|..+..++...+..+-...++. .+.+++++++..
T Consensus 20 ~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 91 (172)
T 1t5i_A 20 RKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 91 (172)
T ss_dssp HHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCC
T ss_pred HHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCch
Confidence 3344444444 34567777766544444444445567777888888887665555544 467788877543
No 294
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=21.31 E-value=2.1e+02 Score=22.08 Aligned_cols=60 Identities=15% Similarity=-0.016 Sum_probs=35.6
Q ss_pred HHhcCCCCCC-EEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 56 LINQGCIVGS-TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 56 L~~~g~~~g~-~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+.+.++++|+ +|+|....+.--..+...+...|+.++.+... ++.+. .++..+++.++..
T Consensus 141 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~--~~~~~-~~~~lGa~~~i~~ 201 (328)
T 1xa0_A 141 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK--AAEHD-YLRVLGAKEVLAR 201 (328)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC--TTCHH-HHHHTTCSEEEEC
T ss_pred HhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHH-HHHHcCCcEEEec
Confidence 4456899997 99998875544444444445678866655443 22222 3345677777643
No 295
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=21.17 E-value=2.9e+02 Score=21.39 Aligned_cols=58 Identities=9% Similarity=-0.175 Sum_probs=36.4
Q ss_pred hcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550 58 NQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 58 ~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 117 (251)
..++++|++|++....+.--..+...+...|+.++.+.. +++.+....+..++..++.
T Consensus 150 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~--~~~~~~~~~~~~g~~~~~d 207 (345)
T 2j3h_A 150 VCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAG--SKEKVDLLKTKFGFDDAFN 207 (345)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTSCCSEEEE
T ss_pred HhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHcCCceEEe
Confidence 358999999999997554444444445567886665532 4455554444567776664
No 296
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, 2-(N-morphol ethanesulfonic acid (MES), IDP01892; HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*
Probab=21.09 E-value=2.2e+02 Score=20.62 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.0
Q ss_pred eeeHHHHHHHHHHHHHHHHhc
Q psy4550 39 SITFKQLDEWTDIVGTYLINQ 59 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~~L~~~ 59 (251)
-+||.++.+.+.++|..+.+.
T Consensus 34 l~s~~~i~~~i~~LA~~I~~~ 54 (204)
T 3hvu_A 34 LISEEQIQEKVLELGAIIAED 54 (204)
T ss_dssp EECHHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999875
No 297
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=21.08 E-value=1.3e+02 Score=22.69 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=38.4
Q ss_pred eeeHHHHHH-----HHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 39 SITFKQLDE-----WTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 39 ~~T~~~l~~-----~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.+.+.++.. ...++...+...++.+++.|.++|..+.....+...+..+|..
T Consensus 200 nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~ 256 (280)
T 1urh_A 200 NVPWTELVREGELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVP 256 (280)
T ss_dssp ECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCS
T ss_pred EeeHHHhhcCCccCCHHHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCC
Confidence 356666654 1235555667778888999999999998888888888888863
No 298
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=21.02 E-value=1.1e+02 Score=23.24 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCC
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGG 89 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~ 89 (251)
.+...+...|+.+++.|.+++.... ....+.+.+...|.
T Consensus 66 ~~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~ 105 (285)
T 1uar_A 66 EFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGH 105 (285)
T ss_dssp HHHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCC
Confidence 4566677777888888888887654 34455555566665
No 299
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=21.02 E-value=2.4e+02 Score=20.67 Aligned_cols=42 Identities=17% Similarity=0.022 Sum_probs=30.9
Q ss_pred ceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC
Q psy4550 29 KIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74 (251)
Q Consensus 29 ~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~ 74 (251)
+..+.|.+|.-++..++...+...-+.|++.|+ +|.++..++
T Consensus 7 kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi----~v~laTgrs 48 (266)
T 3pdw_A 7 KGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGV----PYLFVTNNS 48 (266)
T ss_dssp SEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTC----CEEEEESCC
T ss_pred CEEEEeCcCceEeCCEeCccHHHHHHHHHHCCC----eEEEEeCCC
Confidence 445558899878888888888877777888764 477776644
No 300
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=21.01 E-value=3.1e+02 Score=21.76 Aligned_cols=56 Identities=7% Similarity=-0.031 Sum_probs=31.0
Q ss_pred CCCCCEEEEEccCCHHHHHHHHH-HHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIA-IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a-~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+........+-. +...|..+..++.. ..+++...++. ++++|+..
T Consensus 102 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~~~~v~~~ 158 (392)
T 3qhx_A 102 LRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA-DLDAVRAAIRP-TTRLIWVE 158 (392)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT-CHHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC-CHHHHHHhhCC-CCeEEEEE
Confidence 45778776666555433333211 23456666666543 66677776653 55566543
No 301
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=20.98 E-value=2.5e+02 Score=22.07 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=30.9
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC------CCCHHHHHHHHhhcCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET------SYPPALLESVLDDAKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~------~~~~~~l~~~l~~~~~~~vi~ 117 (251)
+++||.|.+..|....+. -++...|+.++.++. ....+++...++. ++++|+.
T Consensus 112 ~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 170 (385)
T 1b5p_A 112 LDPGDEVIVLSPYWVSYP---EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP-RTKALVV 170 (385)
T ss_dssp CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT-TEEEEEE
T ss_pred cCCCCEEEEcCCCchhHH---HHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC-CCEEEEE
Confidence 467888888877655443 234466776555443 2456667666643 4555554
No 302
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=20.97 E-value=3.1e+02 Score=21.62 Aligned_cols=76 Identities=9% Similarity=0.006 Sum_probs=43.2
Q ss_pred eeeHHHHHHHHHHHHH---HH-HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 39 SITFKQLDEWTDIVGT---YL-INQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~---~L-~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
.+++.+.......++. .+ +..++++|++|+|.....+-..++.+| ...|+ .++.++. +++.+. .++..++.
T Consensus 163 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~--~~~~~~-~~~~lGa~ 238 (374)
T 2jhf_A 163 ASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDI--NKDKFA-KAKEVGAT 238 (374)
T ss_dssp TCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECS--CGGGHH-HHHHTTCS
T ss_pred CCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcC--CHHHHH-HHHHhCCc
Confidence 3677765443222222 23 345899999999998644444444444 45687 5555543 333333 34567777
Q ss_pred EEEEc
Q psy4550 114 IVITK 118 (251)
Q Consensus 114 ~vi~~ 118 (251)
.++..
T Consensus 239 ~vi~~ 243 (374)
T 2jhf_A 239 ECVNP 243 (374)
T ss_dssp EEECG
T ss_pred eEecc
Confidence 77643
No 303
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=20.90 E-value=3.1e+02 Score=21.63 Aligned_cols=53 Identities=11% Similarity=-0.036 Sum_probs=34.3
Q ss_pred CCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++|++|+|....+ +-..++.+| ...|+.++.+. +.+.+. .++..+++.++..
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla-~~~Ga~Vi~~~---~~~~~~-~~~~lGa~~v~~~ 234 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVM-KAWDAHVTAVC---SQDASE-LVRKLGADDVIDY 234 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEE---CGGGHH-HHHHTTCSEEEET
T ss_pred cCCCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEe---ChHHHH-HHHHcCCCEEEEC
Confidence 89999999999544 555554444 46688665543 334443 4467788877753
No 304
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=20.75 E-value=2.8e+02 Score=21.05 Aligned_cols=56 Identities=14% Similarity=-0.039 Sum_probs=36.0
Q ss_pred CCCCCEEEEEccCCHHHHHHHHH-HHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIA-IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a-~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 118 (251)
+++||.|.+..+........+.. +...|+.+..++. .+.+++...++. ++++|+..
T Consensus 34 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~i~~-~~~~v~~~ 90 (331)
T 1pff_A 34 LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-AVPGNIEKHLKP-NTRIVYFE 90 (331)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-TSTTHHHHTCCT-TEEEEEEE
T ss_pred cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-CCHHHHHHhhcC-CCeEEEEE
Confidence 46899998887776665444432 3457887777754 456677776653 45666653
No 305
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=20.73 E-value=45 Score=25.69 Aligned_cols=79 Identities=6% Similarity=0.073 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC--CCCHH---HHHHHHhhcCccE
Q psy4550 42 FKQLDEWTDIVGTYLINQ--GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET--SYPPA---LLESVLDDAKPSI 114 (251)
Q Consensus 42 ~~~l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~--~~~~~---~l~~~l~~~~~~~ 114 (251)
+..+.++..++-..+++. .+ ++ +..+...+...++.--+++-..|.. .+++ .-++. ++...++..++++
T Consensus 154 ~~~~~~~L~~Ld~~~~~~l~~~-~~-~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 229 (284)
T 3cx3_A 154 AQAFIKKAQELTKKFQPKFEKA-TQ-KTFVTQHTAFSYLAKRFGLNQLGIA--GISPEQEPSPRQLTEIQEFVKTYKVKT 229 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-SC-CCEEEEESCCHHHHHHTTCCEEEEE--CSSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CC-CEEEEECCchHHHHHHcCCEEeecc--CCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 344444444444444332 23 23 3346667788888777766544322 2332 23444 4555567789999
Q ss_pred EEEccchhhh
Q psy4550 115 VITKGEYMDR 124 (251)
Q Consensus 115 vi~~~~~~~~ 124 (251)
||+++....+
T Consensus 230 if~e~~~~~~ 239 (284)
T 3cx3_A 230 IFTESNASSK 239 (284)
T ss_dssp EEECSSSCCH
T ss_pred EEEeCCCCcH
Confidence 9998776543
No 306
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=20.60 E-value=98 Score=23.93 Aligned_cols=51 Identities=6% Similarity=-0.012 Sum_probs=37.0
Q ss_pred eeHHHHHHH------HHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 40 ITFKQLDEW------TDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 40 ~T~~~l~~~------~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
+.|.++... ...+...+.+.++.+++.|.++|..+.....+..++..+|..
T Consensus 224 iP~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~ 280 (302)
T 3olh_A 224 IPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKP 280 (302)
T ss_dssp CCGGGGBCSSSCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCC
T ss_pred cCHHHhcCCCCccCCHHHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCC
Confidence 556655332 345556677778888999999999888887777777778863
No 307
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=20.58 E-value=97 Score=19.77 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEEccC
Q psy4550 50 DIVGTYLINQGCIVGSTVGVLMER 73 (251)
Q Consensus 50 ~~~a~~L~~~g~~~g~~V~l~~~~ 73 (251)
..+.+.|.++|+.+|..|-+.-..
T Consensus 21 ~~l~rrL~~lGl~pG~~V~Vv~~~ 44 (105)
T 2k5f_A 21 PAVRRRLMDLGLVRGAKLKVLRFA 44 (105)
T ss_dssp HHHHHHHHHHTCSTTCEEEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEEEC
Confidence 345677999999999999887653
No 308
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=20.36 E-value=3e+02 Score=21.13 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=36.9
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC----CCCHHHHHHHHhh-cCccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET----SYPPALLESVLDD-AKPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~----~~~~~~l~~~l~~-~~~~~vi~ 117 (251)
.++||.|.+..+....+. -++...|+.++.++. ....+++...++. .++++|+.
T Consensus 89 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l 147 (354)
T 3ly1_A 89 ASLEAQLVIPELTYGDGE---HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYL 147 (354)
T ss_dssp CCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEE
T ss_pred hCCCCeEEECCCCchHHH---HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEE
Confidence 467999988877655543 445577876666643 2367888888875 56777775
No 309
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=20.30 E-value=3.1e+02 Score=21.34 Aligned_cols=75 Identities=15% Similarity=0.027 Sum_probs=43.1
Q ss_pred eeeHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEccC-CHHHHHHHHHHHHH-CCeEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 39 SITFKQLDEWTDI---VGTYLINQGCIVGSTVGVLMER-CLEWTISYIAIHKA-GGGYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 39 ~~T~~~l~~~~~~---~a~~L~~~g~~~g~~V~l~~~~-~~~~~~~~~a~~~~-G~~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
.+++.+....... .-+.|...++++|++|++.... .+-..++.++ ... |+.++.++. +++.+.. ++..++.
T Consensus 143 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a-~~~~Ga~Vi~~~~--~~~~~~~-~~~~g~~ 218 (347)
T 1jvb_A 143 RLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDV--REEAVEA-AKRAGAD 218 (347)
T ss_dssp SSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEES--SHHHHHH-HHHHTCS
T ss_pred CCCHHHcccchhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-HHcCCCeEEEEcC--CHHHHHH-HHHhCCC
Confidence 4666664322211 1233455689999999999987 4555554444 455 887665543 3444433 3455666
Q ss_pred EEEE
Q psy4550 114 IVIT 117 (251)
Q Consensus 114 ~vi~ 117 (251)
.++.
T Consensus 219 ~~~~ 222 (347)
T 1jvb_A 219 YVIN 222 (347)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6654
No 310
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=20.30 E-value=3.2e+02 Score=21.50 Aligned_cols=75 Identities=9% Similarity=-0.024 Sum_probs=42.9
Q ss_pred eeeHHHHHHHHHHHHH---HH-HhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC-eEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550 39 SITFKQLDEWTDIVGT---YL-INQGCIVGSTVGVLMERCLEWTISYIAIHKAGG-GYLPLETSYPPALLESVLDDAKPS 113 (251)
Q Consensus 39 ~~T~~~l~~~~~~~a~---~L-~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~ 113 (251)
.+++.+.......++. .+ +..++++|++|+|.....+-..++.+| ...|+ .++.++. +++.+. .++..++.
T Consensus 162 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla-~~~Ga~~Vi~~~~--~~~~~~-~~~~lGa~ 237 (373)
T 2fzw_A 162 LAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDI--NKDKFA-RAKEFGAT 237 (373)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECS--CGGGHH-HHHHHTCS
T ss_pred CCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcC--CHHHHH-HHHHcCCc
Confidence 4677765443222222 23 345899999999998644555555554 45687 5655543 333333 34456777
Q ss_pred EEEE
Q psy4550 114 IVIT 117 (251)
Q Consensus 114 ~vi~ 117 (251)
.++.
T Consensus 238 ~vi~ 241 (373)
T 2fzw_A 238 ECIN 241 (373)
T ss_dssp EEEC
T ss_pred eEec
Confidence 7664
No 311
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=20.13 E-value=75 Score=24.62 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=33.0
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCC-C--CCHHHHHHHHhhc-----CccEEEE
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET-S--YPPALLESVLDDA-----KPSIVIT 117 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~-~--~~~~~l~~~l~~~-----~~~~vi~ 117 (251)
+++||.|.+..+.....+...-.+...|+.++++.. . .+.+++...++.. ++++|+.
T Consensus 74 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~ 138 (347)
T 1jg8_A 74 TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAI 138 (347)
T ss_dssp CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEE
T ss_pred cCCCCEEEEcCcchhhhccccchhhccCeEEEEecCCCCccCHHHHHHHhccccccccCceEEEE
Confidence 468999887655322211111245557888887721 1 3677888877642 4666665
No 312
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=20.09 E-value=3.1e+02 Score=22.50 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=37.6
Q ss_pred CCCCCEEEEEccCCHHHHHHHHHHHH-----HCC--eEeeCCCCCC------HHHHHHHHhhcCccEEEEc
Q psy4550 61 CIVGSTVGVLMERCLEWTISYIAIHK-----AGG--GYLPLETSYP------PALLESVLDDAKPSIVITK 118 (251)
Q Consensus 61 ~~~g~~V~l~~~~~~~~~~~~~a~~~-----~G~--~~v~i~~~~~------~~~l~~~l~~~~~~~vi~~ 118 (251)
+.+|++|+|.++-+.|..+++..+.. .|. ..+-++.... .+.+..+.+..+..+.+..
T Consensus 10 l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 10 LLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp HTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 45678888888888888887777765 343 4455565443 2335556677777766654
No 313
>3bww_A Protein of unknown function DUF692/COG3220; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.20A {Haemophilus somnus}
Probab=20.07 E-value=2.2e+02 Score=22.26 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=34.9
Q ss_pred hhhhHHHHHHHHHHhCCCc-eEEEecCCCeeeHHHHHHHHHHHHHHHHh
Q psy4550 11 AEGALHYMFRNQAKRTPDK-IAVVDHDGRSITFKQLDEWTDIVGTYLIN 58 (251)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~-~a~~~~~~~~~T~~~l~~~~~~~a~~L~~ 58 (251)
....+++++....++.+.. +.++..++.-=.+.++.+.+.++...+.+
T Consensus 247 V~~~VW~Ll~~~~~r~g~~~ptllErD~niP~~~~L~~E~~~a~~~~~~ 295 (307)
T 3bww_A 247 VKGTVWDLLEYTYARLSHMPPTLLERDFNFPPFEKLCKEVDIIHQLQQK 295 (307)
T ss_dssp ---HHHHHHHHHHTTCSSBCCEEECC---CCCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCCCceEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 4467999999999999987 77777777655799999999888877654
No 314
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=20.06 E-value=61 Score=25.92 Aligned_cols=104 Identities=13% Similarity=-0.015 Sum_probs=56.0
Q ss_pred CCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC---HHHHHHHHHHHHHCCeEeeCCCCCCHHHH
Q psy4550 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC---LEWTISYIAIHKAGGGYLPLETSYPPALL 103 (251)
Q Consensus 27 ~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~---~~~~~~~~a~~~~G~~~v~i~~~~~~~~l 103 (251)
..+..+.|.+|.-+...+....+...-+.|++.| -++.++..|+ .+-.+-.+. -..|....+=.--.+....
T Consensus 12 ~~~~~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g----~~~~~vTNn~~~~~~~~~~~l~-~~lgi~~~~~~i~ts~~~~ 86 (352)
T 3kc2_A 12 KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNK----IPYILLTNGGGFSERARTEFIS-SKLDVDVSPLQIIQSHTPY 86 (352)
T ss_dssp CCEEEEECCBTTTEETTEECTTHHHHHHHHHHTT----CCEEEECSCCSSCHHHHHHHHH-HHHTSCCCGGGEECTTGGG
T ss_pred cCCEEEEECCCeeEcCCeeCcCHHHHHHHHHHCC----CEEEEEeCCCCCCchHHHHHHH-HhcCCCCChhhEeehHHHH
Confidence 3556666888876666666677777777788765 4588888876 344444443 1356421110001122222
Q ss_pred HHHHhhcCccEEEEccchhhhhhccCCCeeee
Q psy4550 104 ESVLDDAKPSIVITKGEYMDRLERTSVPKVKL 135 (251)
Q Consensus 104 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 135 (251)
..++...+.-+++-.+...+.+++.+...+..
T Consensus 87 ~~~~~~~~~v~viG~~~l~~~l~~~G~~~v~~ 118 (352)
T 3kc2_A 87 KSLVNKYSRILAVGTPSVRGVAEGYGFQDVVH 118 (352)
T ss_dssp GGGTTTCSEEEEESSTTHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCEEEEECCHHHHHHHHhCCCeEecc
Confidence 33344333334444455566666666665543
No 315
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=20.05 E-value=1.5e+02 Score=22.61 Aligned_cols=40 Identities=5% Similarity=-0.104 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550 51 IVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (251)
Q Consensus 51 ~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~ 90 (251)
.+...+.+.++.++..|.++|..+.....+..++..+|..
T Consensus 227 ~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~ 266 (296)
T 1rhs_A 227 ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKP 266 (296)
T ss_dssp HHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 4555566667888899999999988887777777788864
Done!