RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4550
(251 letters)
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 159 bits (406), Expect = 2e-46
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 47/218 (21%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD +AVV +S+T+++L+E + + YL +G G V + +ER E ++ +A+ K
Sbjct: 1 PDAVAVVF-GDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLK 59
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
AG Y+PL+ +YP L +L+D+ +++T
Sbjct: 60 AGAAYVPLDPAYPAERLAYMLEDSGAKLLLTDP--------------------------- 92
Query: 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREA 206
DD+AY++Y+SG+TG+PKG++ HRG V+ W Y DR
Sbjct: 93 --------------DDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVL 138
Query: 207 CNV-----FFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
VWE+ PL G + + EV+ DP L
Sbjct: 139 QFASFSFDASVWEIFPPLLSGATLVLAPPEVLRDPEAL 176
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 144 bits (366), Expect = 6e-41
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 16/214 (7%)
Query: 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
T+++LDE + + L G G V +L+ EW ++ +A+ KAG Y+PL+ S P
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVD------ 154
L +L+D++ ++IT E + +L + + L + E L + +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGAS 120
Query: 155 ----FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACN-- 208
P V DD+AYI+Y+SGTTGKPKG++ HR + + DR
Sbjct: 121 AEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLP 180
Query: 209 ---VFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
VWE+ PL G + ++ DP RL
Sbjct: 181 LHFDGSVWEIFGPLLAGGTLVLVPKFT-LDPARL 213
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 144 bits (365), Expect = 9e-41
Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 8/211 (3%)
Query: 41 TFKQLDEWTDIVGTYLINQGCI-VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
T+++LDE + + +L G + G V VL+ER E ++ +A+ KAG Y+PL+ +YP
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVG 159
L +L+DA +++T RL +P + L+ L+ ++ G
Sbjct: 61 AERLAFILEDAGARLLLTDSALASRLAGLVLPVILLDPLELA--ALDDAPAPPPPDAPSG 118
Query: 160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACN---VF--FVWE 214
DD+AY++Y+SG+TG+PKG+V HR V+ W R Y D DDR F V E
Sbjct: 119 PDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEE 178
Query: 215 MLRPLTQGIPMYVISDEVIYDPPRLTSGWVR 245
+ L G + V ++ D L + +
Sbjct: 179 IFGALLAGATLVVPPEDEERDDAALLAALIA 209
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 143 bits (363), Expect = 5e-40
Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD IA+V + RS+T+ +L+E + + L +G G V +L+ER E ++ +AI K
Sbjct: 1 PDAIALV-YGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILK 59
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
AG Y+PL+ +YP L +L+D+ +++T +P V LE
Sbjct: 60 AGAAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLPLVILE-------EEL 112
Query: 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR---HRAY-PYDED 202
+ + P V DD+AY++Y+SG+TG+PKG+ PHRG V R + Y D D
Sbjct: 113 DAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV-----RLVRNTNYIALDPD 167
Query: 203 DR--EACNVFF---VWEMLRPLTQGIPMYVISDEVIYDPPRL 239
DR + + F +E+ L G + +I E + DP RL
Sbjct: 168 DRFLQLSPLSFDASTFEIWGALLNGGRLVLIDKETLLDPDRL 209
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 136 bits (343), Expect = 2e-36
Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 16/244 (6%)
Query: 5 NLSDYD-AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63
N + A +H + QA++ P++ A+V + +++ +L+ + + LI G
Sbjct: 503 NAPATEYAPDCVHQLIEAQARQHPERPALV-FGEQVLSYAELNRQANRLAHVLIAAGVGP 561
Query: 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
VG+ +ER +E + +A+ KAGG Y+PL+ YP L +LDD+ +++T+ +
Sbjct: 562 DVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLA 621
Query: 124 RLER-TSVPKVKLEN--DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
+L + + L+ D L N + + D++AY++Y+SG+TG+PKG+
Sbjct: 622 QLPVPAGLRSLCLDEPADLLCGYSGHNPE------VALDPDNLAYVIYTSGSTGQPKGVA 675
Query: 181 CPHRGAVHAYKWRHRAYPYDEDDREACNV-----FFVWEMLRPLTQGIPMYVISDEVIYD 235
H + DD V E+ L G ++++ + D
Sbjct: 676 ISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPDCARD 735
Query: 236 PPRL 239
Sbjct: 736 AEAF 739
Score = 122 bits (308), Expect = 1e-31
Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 25/245 (10%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
Y +H + +QA TP+ +A+V + +T+ +L+ + + LI G V
Sbjct: 1569 GYPLARLVHQLIEDQAAATPEAVALV-FGEQELTYGELNRRANRLAHRLIALGVGPEVLV 1627
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
G+ +ER LE + +AI KAGG Y+PL+ YP L +++D+ +++T+ RL
Sbjct: 1628 GIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPL 1687
Query: 128 TS-VPKVKL--ENDFLSKMISENEKLHNVDFPQVGLDD--IAYIVYSSGTTGKPKGIVCP 182
+ + L E+D+L N P V L +AY++Y+SG+TG+PKG
Sbjct: 1688 PDGLRSLVLDQEDDWLEGYSDSN--------PAVNLAPQNLAYVIYTSGSTGRPKGAGNR 1739
Query: 183 HRGAVHAYKWRHRAYPYDEDDREACNVFF--------VWEMLRPLTQGIPMYVISDEVIY 234
H V+ AY D + F VWE+ PL G + +
Sbjct: 1740 HGALVNRLCATQEAYQLSAAD---VVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHR 1796
Query: 235 DPPRL 239
DP +L
Sbjct: 1797 DPEQL 1801
Score = 107 bits (268), Expect = 2e-26
Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 22/244 (9%)
Query: 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGS 65
+ Y +E +H + Q RTP+ A+V D + +++ +L+ + + LI G VG
Sbjct: 3088 AAAYPSERLVHQLIEAQVARTPEAPALVFGD-QQLSYAELNRRANRLAHRLIAIG--VGP 3144
Query: 66 T--VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
VGV +ER +E ++ +A+ KAGG Y+PL+ YP L +++D+ +++T+ ++
Sbjct: 3145 DVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLE 3204
Query: 124 RLER-TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLD--DIAYIVYSSGTTGKPKGIV 180
+L + L+ L+ N P + ++AY++Y+SG+TGKPKG+
Sbjct: 3205 QLPAPAGDTALTLDRLDLNGYSENN--------PSTRVMGENLAYVIYTSGSTGKPKGVG 3256
Query: 181 CPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYD 235
H + W AY D +DR + F L L G + V+ D ++D
Sbjct: 3257 VRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCL-VVRDNDLWD 3315
Query: 236 PPRL 239
P L
Sbjct: 3316 PEEL 3319
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 130 bits (329), Expect = 2e-35
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 42/187 (22%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
LH + QA+RTPD IAVV D S+T+ +L+ + + L G S VGV + R
Sbjct: 1 LHELVEAQAERTPDAIAVVCGD-ESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRS 59
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
+ ++ +A+ KAG Y+PL+ +YPP L +L+DA +V+T
Sbjct: 60 PDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLT----------------- 102
Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH 194
DD+AY++Y+SG+TG+PKG+ HR A +W
Sbjct: 103 ------------------------DPDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAA 138
Query: 195 RAYPYDE 201
+ +E
Sbjct: 139 AVFSAEE 145
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 130 bits (329), Expect = 1e-34
Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 14/238 (5%)
Query: 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
+ +H +F QA TPD +A+V G+ +T+ +LD + + LI+ G G T
Sbjct: 221 APIPLRLTIHLLFEEQAATTPDAVALV-RGGQQLTYAELDARANRLARLLISLGVGPGET 279
Query: 67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
V +L +R LE ++ +A+ KAG Y+PL+ YP L +L+D++P++++T+ R++
Sbjct: 280 VAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHL--RVD 337
Query: 127 RTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
+P + L+ + + D +AYI+Y+SG+TG+PKG+ HR
Sbjct: 338 DVGLPGLALD------DALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRAL 391
Query: 187 VHAYKWRHRAYPYDEDDREA-----CNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
+ + D DDR V+E+ L +G + + + DP L
Sbjct: 392 ANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAAL 449
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 125 bits (317), Expect = 1e-33
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 46/205 (22%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+ PD +AV DG +T+ +LD + + +LI+ G G V + +ER ++ +
Sbjct: 2 AQTHPDAVAVDFWDGS-LTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAIL 60
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
A+ KAG Y+P++ S P L+ +++D+ ++V+T
Sbjct: 61 AVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLT------------------------- 95
Query: 143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDED 202
DD AY++Y+SG+TGKPKG+V HR + +
Sbjct: 96 ---------------SSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPG 140
Query: 203 DREAC--NVFF---VWEMLRPLTQG 222
DR ++ F + E+ L G
Sbjct: 141 DRVLQFASIAFDVSILEIFTTLLAG 165
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 124 bits (315), Expect = 2e-33
Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 47/218 (21%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD IA+ D D R++++ +LDE ++ + L G G VGVL+ER + + +AI K
Sbjct: 1 PDAIALRDDD-RTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILK 59
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
AG Y+PL+ SYP L+ +L+DA+P++++T
Sbjct: 60 AGAAYVPLDPSYPAERLQYMLEDAEPALLLTDP--------------------------- 92
Query: 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR-- 204
DD+AY++Y+SG+TGKPKG+ HR V+ R DR
Sbjct: 93 --------------DDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLL 138
Query: 205 EACNVFF---VWEMLRPLTQGIPMYVISDEVIYDPPRL 239
+ F V E+L PL G + + S E + DP RL
Sbjct: 139 AVTTISFDISVLELLLPLLSGATVVIASAETVRDPERL 176
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 123 bits (310), Expect = 2e-32
Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 12/190 (6%)
Query: 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGS 65
AE L + A+R PD+ A++ G +T+++LD + + L G G
Sbjct: 5 MRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGD 64
Query: 66 TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
V +L+ E+ I+++A +AG +PL P L +L+DA ++IT E+ L
Sbjct: 65 RVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALL 124
Query: 126 ER-----TSVPKVKLENDFLSKMISENEKLHN------VDFPQVGLDDIAYIVYSSGTTG 174
E V V L D ++ E L D V DD+A+++Y+SGTTG
Sbjct: 125 EAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTG 184
Query: 175 KPKGIVCPHR 184
PKG+V HR
Sbjct: 185 LPKGVVLTHR 194
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 116 bits (294), Expect = 3e-30
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 18/225 (8%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD AV+D G +T+ +L + + L G G V V+M + E ++ + I
Sbjct: 1 PDATAVIDGAGT-LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILL 59
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
AG Y+P++ P ++L A V+T E + V +
Sbjct: 60 AGAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQPEEAPDLLVVADDAA----AAES 115
Query: 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREA 206
P+V DD+AY++++SG+TG+PKG++ HR AV+ +R + DR
Sbjct: 116 PAPP----PPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRVL 171
Query: 207 C--NVFF---VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRL 246
+ F V+++ L+ G + + + DP W L
Sbjct: 172 ALSALHFDLSVYDIFGALSAGAALVLPDEARRRDPDH----WAEL 212
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 117 bits (295), Expect = 6e-30
Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 15/239 (6%)
Query: 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVG 68
Y + +H +F Q +RTP+ A+ ++ + +L+ + + LI +G VG
Sbjct: 507 YPLQRGVHRLFEEQVERTPEAPALA-FGEETLDYAELNRRANRLAHALIERGVGPDVLVG 565
Query: 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT 128
V MER +E ++ +AI KAGG Y+PL+ YP L +L+D+ +++++ +L
Sbjct: 566 VAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA 625
Query: 129 SVPKVKLEND---FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
+ +V + +L EN + +++AY++Y+SG+TGKPKG HR
Sbjct: 626 AGVQVLDLDRPAAWLEGYSEENPGTE------LNPENLAYVIYTSGSTGKPKGAGNRHRA 679
Query: 186 AVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRL 239
+ W +AY D F VWE PL G + V + DP +L
Sbjct: 680 LSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKL 738
Score = 114 bits (286), Expect = 1e-28
Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 23/244 (9%)
Query: 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
+ Y A +H + +A+ TPD +AVV D +T+ +L+ + + LI +G
Sbjct: 4545 AGYPATRCVHQLVAERARMTPDAVAVV-FDEEKLTYAELNRRANRLAHALIARGVGPEVL 4603
Query: 67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
VG+ MER E + +A+ KAGG Y+PL+ YP L +++D+ ++++T+ + RL
Sbjct: 4604 VGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRL- 4662
Query: 127 RTSVPK----VKLENDFLSKMISENEKLHNVDFPQVGL--DDIAYIVYSSGTTGKPKGIV 180
+P + L+ D + ++ P V L D++AY++Y+SG+TG+PKG+
Sbjct: 4663 --PIPDGLASLALDRDEDWEGFPAHD-------PAVRLHPDNLAYVIYTSGSTGRPKGVA 4713
Query: 181 CPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYD 235
H V+ Y DDR + F + PL G + VI D+ ++D
Sbjct: 4714 VSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGLYHPLINGASV-VIRDDSLWD 4772
Query: 236 PPRL 239
P RL
Sbjct: 4773 PERL 4776
Score = 111 bits (280), Expect = 5e-28
Identities = 61/241 (25%), Positives = 111/241 (46%), Gaps = 15/241 (6%)
Query: 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGS 65
Y +H QA R P+ IAVV + +++ +LD + + L +G
Sbjct: 1996 PEAYPRGPGVHQRIAEQAARAPEAIAVV-FGDQHLSYAELDSRANRLAHRLRARGVGPEV 2054
Query: 66 TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
V + ER E ++ +A+ KAGG Y+PL+ +YP L +L+D+ ++++T+ ++RL
Sbjct: 2055 RVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERL 2114
Query: 126 E-RTSVPKVKLE-NDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
V ++ L+ + + Q+ +++AY++Y+SG+TG PKG+ H
Sbjct: 2115 PLPAGVARLPLDRDAEWADYPDTAPA------VQLAGENLAYVIYTSGSTGLPKGVAVSH 2168
Query: 184 RGAVHAYKWRHRAYPYDEDDRE---ACNVF--FVWEMLRPLTQGIPMYVISDEVIYDPPR 238
V + Y D E F + PL G + +I D+ ++DP +
Sbjct: 2169 GALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARV-LIRDDELWDPEQ 2227
Query: 239 L 239
L
Sbjct: 2228 L 2228
Score = 93.9 bits (233), Expect = 9e-22
Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 15/243 (6%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+Y E +H +F Q +RTPD +A+ + R +++ +L+ + + LI +G V
Sbjct: 3052 EYPLERGVHRLFEEQVERTPDAVALAFGEQR-LSYAELNRRANRLAHRLIERGVGPDVLV 3110
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
GV +ER LE + +AI KAGG Y+PL+ YP L +L+D+ +++++
Sbjct: 3111 GVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQ-------SH 3163
Query: 128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
+P + EN N + +++AY++Y+SG+TGKPKG+ H
Sbjct: 3164 LRLPLAQGVQVLDLDRGDENYAEANPAIRTMP-ENLAYVIYTSGSTGKPKGVGIRHSALS 3222
Query: 188 HAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSG 242
+ W +AY DR F V E+ PL G + V++ + P L
Sbjct: 3223 NHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARV-VLAGPEDWRDPALLVE 3281
Query: 243 WVR 245
+
Sbjct: 3282 LIN 3284
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 116 bits (293), Expect = 1e-29
Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 23/211 (10%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
QA +TPD A+ D +++++ E + L +G G +V V + R + T++
Sbjct: 467 QAAKTPDAPALAD-ARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLAL 525
Query: 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLS 141
AI +AG +LPL+T YP L+ +L+DA+PS++IT + + R VP +
Sbjct: 526 HAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRF--ADVPDLTSL----- 578
Query: 142 KMISENEKLHNVDFPQVGL---DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP 198
N L + L AYI+++SG+TG+PKG++ V+ W YP
Sbjct: 579 ---CYNAPLAPQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYP 635
Query: 199 YDEDDREA----CNVFF---VWEMLRPLTQG 222
DD C+ F VWE P G
Sbjct: 636 LTADDVVLQKTPCS--FDVSVWEFFWPFIAG 664
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 102 bits (256), Expect = 8e-25
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 14/230 (6%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
QA++TP++IA+V DG S+ + +L + + YL ++G V + ER + +
Sbjct: 1140 QARQTPERIALV-WDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGL 1198
Query: 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-VPKVKLENDFL 140
+AI KAGG Y+PL+ YP L +L D+ +++T+ ++RL + V + L++ L
Sbjct: 1199 LAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSLHL 1258
Query: 141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD 200
S+ LH D++AY++Y+SG+TG+PKG+ H +W Y D
Sbjct: 1259 DSWPSQAPGLHLHG------DNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALD 1312
Query: 201 EDD---REACNVF--FVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVR 245
+ D ++A F VWE PL G + + DP R+ V+
Sbjct: 1313 DSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAE-LVQ 1361
Score = 91.8 bits (228), Expect = 5e-21
Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 7/178 (3%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+ + LH +F QA RTP A+ G+++++ +LD + + L +G V
Sbjct: 2183 EARLDQTLHGLFAAQAARTPQAPALT-FAGQTLSYAELDARANRLARALRERGVGPQVRV 2241
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
G+ +ER LE + +AI KAGG Y+PL+ YP L +++D+ ++++ + L
Sbjct: 2242 GLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGE 2301
Query: 128 --TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
V + LE+D + + L + PQ AY++Y+SG+TGKPKG+V H
Sbjct: 2302 LPAGVARWCLEDDAAALAAYSDAPLPFLSLPQ----HQAYLIYTSGSTGKPKGVVVSH 2355
Score = 71.7 bits (176), Expect = 3e-14
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
DY E + +F Q P +IA D + ++ +L+ + +G L G V V
Sbjct: 3715 DYPLEQSYVRLFEAQVAAHPQRIAASCLD-QQWSYAELNRAANRLGHALRAAGVGVDQPV 3773
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAK-PSIVITKG------E 120
+L ER L+ + KAG GYLPL+ P L+ +++ ++ P +V +
Sbjct: 3774 ALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARA 3833
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV--GLDDIAYIVYSSGTTGKPKG 178
+D L + P++ + + + ++ HN P + G D++AY++Y+SG+TG PKG
Sbjct: 3834 LLDELGCANRPRLLVWEEVQAGEVAS----HN---PGIYSGPDNLAYVIYTSGSTGLPKG 3886
Query: 179 IVCPHRG 185
++ RG
Sbjct: 3887 VMVEQRG 3893
Score = 45.9 bits (109), Expect = 1e-05
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 29/183 (15%)
Query: 20 RNQAKRTPDKIAV-----VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ +A +TPD++A+ +G ++++ LD + L + G +L
Sbjct: 16 QRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARA-SFGDRAVLLFPSG 74
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPP--------ALLESVLDDAKPSIVITKGEY----- 121
++ ++ AG +P +YPP L S++ DA+P +++T +
Sbjct: 75 PDYVAAFFGCLYAGVIAVP---AYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLL 131
Query: 122 -MDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
M+ L + P++ L D L ++E P + DDIA++ Y+SG+T PKG+
Sbjct: 132 QMEELAAANAPEL-LCVDTLDPALAEAW-----QEPALQPDDIAFLQYTSGSTALPKGVQ 185
Query: 181 CPH 183
H
Sbjct: 186 VSH 188
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 101 bits (253), Expect = 1e-24
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 49/220 (22%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A + PD+ A+V G ++T+ +L E D + L+ G G V V + + + +
Sbjct: 1 AAKHPDRPALVV-GGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAIL 59
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
A KAG Y+PL+ S P + +L+ A P+ ++
Sbjct: 60 ACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVADP----------------------- 96
Query: 143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDED 202
DD+AYI+++SG+TGKPKG+ H W + E
Sbjct: 97 ------------------DDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEG 138
Query: 203 DREACNVF---F---VWEMLRPLTQGIPMYVISDEVIYDP 236
D + N F V+++ L G +YVI E I DP
Sbjct: 139 DVFS-NQAPFSFDLSVFDLFPALASGATLYVIPKEQIADP 177
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 95.0 bits (237), Expect = 2e-22
Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 22/212 (10%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ A+R DK A V + +T+ +L+ L G G V + W
Sbjct: 10 LLARAARRFGDKEAYVF-GDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHW 68
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG----------------EY 121
I+ + KAG +PL T Y +L + G E+
Sbjct: 69 VIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEH 128
Query: 122 MDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVC 181
+ E + + ++ + P+V DD+A I+++SGTTG+PKG +
Sbjct: 129 VVICETEEDDPHTEKMKTFTDFLAAGDPAER--APEVDPDDVADILFTSGTTGRPKGAML 186
Query: 182 PHRGAVHAYK-WRHRAYPYDEDDREAC-NVFF 211
HR + W E DR N FF
Sbjct: 187 THRQLLSNAADWAEYL-GLTEGDRYLAANPFF 217
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 94.2 bits (235), Expect = 3e-22
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 60/184 (32%)
Query: 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87
D+IA+VD GRS+T+ +LD + + L+ G + G V VL + E+ + Y+AI +A
Sbjct: 1 DRIALVD-GGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRA 59
Query: 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISEN 147
GG +PL SYP A L +L D++PS+++
Sbjct: 60 GGVAVPLNPSYPAAELAYILSDSQPSLLV------------------------------- 88
Query: 148 EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH-------RGAVHAYKWRHRAYPYD 200
D A I+Y+SGTTG+PKG+V H R V A++W
Sbjct: 89 --------------DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRW-------T 127
Query: 201 EDDR 204
D
Sbjct: 128 ASDV 131
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 92.7 bits (231), Expect = 1e-21
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Query: 15 LHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
L A D+ A++D GR++T+ +L+ + L +G G V +L
Sbjct: 7 LDSASLLFASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPN 66
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV 133
LE+ + ++A+ AG Y PA + + D+ + IT E ++L ++ V
Sbjct: 67 SLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLASLALEPV 126
Query: 134 KL--ENDFLSKMISE--NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
L D S I + + DD+A + YSSGTTG+ KG++ HR +
Sbjct: 127 VLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLI 184
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 92.7 bits (231), Expect = 2e-21
Identities = 42/202 (20%), Positives = 70/202 (34%), Gaps = 20/202 (9%)
Query: 20 RNQAKRTPDKIAVV----DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75
R+ PD A++ D R +T+ L + L + G + G V + M
Sbjct: 17 RHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSP 76
Query: 76 EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL 135
E I+ +A + G + + + D P ++I +
Sbjct: 77 EAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNG---KEIALLE 133
Query: 136 END--------FLSKMISENEKLHN----VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
+ D + +E + +F + DD +++Y+SGTTGKPKGIV H
Sbjct: 134 DADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSH 193
Query: 184 RG-AVHAYKWRHRAYPYDEDDR 204
G V DR
Sbjct: 194 GGYLVEHRLTAKFHGDLLPGDR 215
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 92.2 bits (230), Expect = 2e-21
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
L + A+R PD+ A+ GR +T+ +LDE +D YL G G V +++ C
Sbjct: 1 LADLLERAARRFPDRPALTFF-GRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNC 59
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
++ I+Y I KAG +P+ Y P LE L+D+ ++I + D L +
Sbjct: 60 PQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALASGA----- 114
Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
++ DD+A + Y+ GTTG PKG + HR
Sbjct: 115 ----------------PLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRN 149
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 91.4 bits (228), Expect = 4e-21
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 19/193 (9%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
D + + R+ A++ PDK AV DGR T+ +LDE + + L G G V
Sbjct: 1 MQDYPLTIGRILRHGARKHPDKEAVYF-DGRRTTYAELDERVNRLANALRALGVKKGDRV 59
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
V E+ +Y A+ K G P+ P + +L+DA+ +V+ E++ L
Sbjct: 60 AVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAA 119
Query: 128 -----TSVPKVKLENDFLSKMISENEKLHN-----------VDFPQVGLDDIAYIVYSSG 171
+V V +E D ++ DFP + +D A ++Y+SG
Sbjct: 120 ILPQLPTVRTVIVEGD--GPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSG 177
Query: 172 TTGKPKGIVCPHR 184
TTG PKG+V HR
Sbjct: 178 TTGHPKGVVLSHR 190
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 87.4 bits (217), Expect = 1e-19
Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 46/232 (19%)
Query: 18 MFRNQAKRTPDKIAVV---DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ K PD +A++ +IT+++L E + + L++ G G V +
Sbjct: 21 RLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANR 80
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-DRLERT----- 128
EW I+ +AI G +P+ ++ P L +L++++ ++ + + + D +
Sbjct: 81 PEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCP 140
Query: 129 -------SVPKVKLENDFLSKMIS----ENEKLHNVDFPQVG-------LDDIAYIVYSS 170
+ V+ + + ++ E L +D + DD+A I+Y+S
Sbjct: 141 KVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTS 200
Query: 171 GTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQG 222
GTTG PKG++ HR + V + E+L P+ G
Sbjct: 201 GTTGTPKGVMLTHRNLLA-------------------QVAGIDEVLPPIGPG 233
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 85.3 bits (212), Expect = 5e-19
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+ PD A D+ G +T+ QL E +D + ++ + S + V E +++
Sbjct: 12 AQTQPDFPAY-DYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFL 70
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
KAG Y+P++ S P +E +++ AKPS++I E LE +P + L+ K
Sbjct: 71 GAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEE--LPLEILGIPVITLDE---LK 125
Query: 143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
I ++ D V DD YI+++SGTTGKPKG+
Sbjct: 126 DIFATGNPYDFDHA-VKGDDNYYIIFTSGTTGKPKGV 161
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 81.8 bits (203), Expect = 9e-18
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 6/164 (3%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
D + DG T+ LD + + L+ G G V V +E+ E Y+A +
Sbjct: 16 RDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLR 75
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTSVPKVKLENDFLSK 142
AG +LPL T+Y A L+ + DA+P++V+ L P V+ + +
Sbjct: 76 AGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTG 135
Query: 143 MISENEKLHNVDFPQV--GLDDIAYIVYSSGTTGKPKGIVCPHR 184
+ E DF V G DD+A I+Y+SGTTG+ KG + H
Sbjct: 136 SLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHG 179
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 81.5 bits (202), Expect = 1e-17
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 14/168 (8%)
Query: 34 DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
G +TF L + + L G G V ++ +E+ ++ AGG
Sbjct: 5 ADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSA 64
Query: 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRL-----ERTSVPKVKLENDFLSKMIS--- 145
SY P L L +KP ++ + +D++ E V ++ + + ++
Sbjct: 65 ANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIED 124
Query: 146 ------ENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
E G DD A ++YSSGTTG PKG++ H+ +
Sbjct: 125 LLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNII 172
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 80.9 bits (200), Expect = 2e-17
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 20/183 (10%)
Query: 19 FRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
++ A+ PDKIAVVD+ G S T+ LD + +L+ +G G V + E+T
Sbjct: 29 WQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFT 88
Query: 79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT-----KGEYMDRLE--RTSVP 131
I Y+A K G +PL S+ A L VL+ + + + +D + + +P
Sbjct: 89 IIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP 148
Query: 132 KVK-----------LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
+++ + LS++I++ E L D++A ++++SGT G PKG++
Sbjct: 149 QLQQIVGVDKLAPATSSLSLSQIIADYEPLT--TAITTHGDELAAVLFTSGTEGLPKGVM 206
Query: 181 CPH 183
H
Sbjct: 207 LTH 209
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 80.9 bits (200), Expect = 2e-17
Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 52/271 (19%)
Query: 13 GALHYMFRNQAKRTPDKIAVV--------DHDGRSITFKQLDEWTDIVGTYLINQGCIVG 64
GA+H +F + A++ PD+ VV RS T+KQ++E ++I+ YL+ G G
Sbjct: 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRG 295
Query: 65 STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS--IVITKG--- 119
V + R ++ ++ + + KAG + ++ +YPPA L AKP IVI K
Sbjct: 296 DVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTL 355
Query: 120 -----EYMDR-LE-RTSVPKVKLEND------FLSKMISENEKLHNVDFPQ-------VG 159
+Y+D+ LE RT +P + L++D L E + L + VG
Sbjct: 356 DQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEG--GETDVLAPYQALKDTPTGVVVG 413
Query: 160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------ 213
D + ++SG+ G PKG++ H + + W + + E+D+ F
Sbjct: 414 PDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDK------FTMLSGIAH 467
Query: 214 -----EMLRPLTQGIPMYVISDEVIYDPPRL 239
+M PL G + V + + I P RL
Sbjct: 468 DPIQRDMFTPLFLGAQLLVPTADDIGTPGRL 498
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 79.7 bits (197), Expect = 3e-17
Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 45/197 (22%)
Query: 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98
IT+ +L E D + L +G G V + M+ ++ I+Y AI +AG +P+
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 99 PPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV 158
A LE +L+D+ ++I E
Sbjct: 61 REAELEHILNDSGARVLIVGSE-------------------------------------- 82
Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDRE-ACNVFF-----V 212
LDD+A I Y+SGTTG PKG + HR + D A F
Sbjct: 83 -LDDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQ 141
Query: 213 WEMLRPLTQGIPMYVIS 229
M P+ G + +++
Sbjct: 142 GSMNAPIYTGATLVLLT 158
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 78.0 bits (193), Expect = 2e-16
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 27/182 (14%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD++A+V R +T+ +L+E + + YLI QG G VG+ +E+ + + K
Sbjct: 17 PDRVALV-CGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFK 75
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPKVKL--------E 136
A + + Y L +LDD+ ++ + E+ R+ +PK++
Sbjct: 76 ARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSG 135
Query: 137 NDFLSKMISENEKLHN----VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
ND L + + L DF + DD+ Y++Y+ GTTG PKG++ W
Sbjct: 136 NDLLPGAVDYEDALAAGSPERDFGERSPDDL-YLLYTGGTTGMPKGVM-----------W 183
Query: 193 RH 194
R
Sbjct: 184 RQ 185
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 76.8 bits (189), Expect = 4e-16
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Query: 17 YMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCL 75
Y +A PD+IA++ + +T+KQL E+ V YLI + G + +L + L
Sbjct: 6 YWIEKRAYLHPDRIAIITEE-EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSL 64
Query: 76 EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE----RTSV- 130
E+ + AI K +PL L L D+ +++ + + + + V
Sbjct: 65 EYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQ 124
Query: 131 PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
+ + + + E E +F + I Y+SGTTGKPKG V
Sbjct: 125 RVISITS------LKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAV 168
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 76.0 bits (188), Expect = 7e-16
Identities = 49/203 (24%), Positives = 76/203 (37%), Gaps = 53/203 (26%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
++IT+ +L E + LI G G V +L E EW I+ +AI AG +P+ +
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 98 YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ 157
P + +L+D+ +V E+
Sbjct: 64 SSPEEVAYILNDSGARVVFV------------------EDK------------------- 86
Query: 158 VGLDDIAYIVYSSGTTGKPKGIVCPHR---GAVHAYKWRHRAYPYDEDDR-----EACNV 209
DD+A ++Y+SGTTG PKG++ HR A P DR +V
Sbjct: 87 --PDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALL---EVIPLSPGDRVLSFLPLAHV 141
Query: 210 F--FVWEMLRPLTQGIPMYVISD 230
F + E L PL+ G +
Sbjct: 142 FEQRLGEYL-PLSSGARVNFAES 163
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 75.2 bits (185), Expect = 1e-15
Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 24/221 (10%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+ P IA + G+ +T++QL E +D + ++ + S + V ++++
Sbjct: 10 AETYPQTIAY-RYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFL 68
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
K+G Y+P++TS P +E +++ A P +VI E T + +
Sbjct: 69 GSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGTQIITLSALEQ---- 124
Query: 143 MISENEKLHNVDFPQ-VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDE 201
+E V F V DD YI+Y+SG+TG PKG+ H V W
Sbjct: 125 --AETSGG-PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNW--------- 172
Query: 202 DDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSG 242
F + E + L Q + V+ P L SG
Sbjct: 173 ----MLADFPLSEGKQFLNQ--APFSFDLSVMDLYPCLASG 207
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 75.0 bits (185), Expect = 2e-15
Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 38/219 (17%)
Query: 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVL 70
E +L + A+R PDK A+V GR+I++++L E + + YL + G G V +
Sbjct: 9 ETSLFHNLEVSARRYPDKTAIV-FYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLY 67
Query: 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-- 128
M+ ++ I+Y AI +A +P+ L + D+ + I E ++
Sbjct: 68 MQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVG 127
Query: 129 ----------------------SVP-----KVKLENDFLSKMISENEKLHNVDFP---QV 158
+VP + L+ +++ E L P
Sbjct: 128 NLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTA 187
Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPHRG----AVHAYKWR 193
G DD+A + Y+SGTTG PKG + HR AV + W
Sbjct: 188 GPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS 226
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 73.8 bits (182), Expect = 4e-15
Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 44/168 (26%)
Query: 37 GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
GR T+ +L E + + L+ G G V ++++ C E+ ++ A++K G +P+ T
Sbjct: 1 GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINT 60
Query: 97 SYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFP 156
+ L +LD + +++
Sbjct: 61 ALRGEELAHILDHSGARLIVV--------------------------------------- 81
Query: 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
D A I+Y+SGTTG PKG++ H + A + R DD
Sbjct: 82 -----DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDV 124
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 73.8 bits (182), Expect = 4e-15
Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 14/186 (7%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ R A+R PDK A+V D RS T+ +LD + V L++ G G V L +
Sbjct: 16 ILRRSARRYPDKTALVFGD-RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAY 74
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS--VPKVKL 135
+ ++A +AG ++P+ L +LD + + E +P L
Sbjct: 75 ALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTL 134
Query: 136 ENDFLSKMISENEKLHNVD---------FPQVGL--DDIAYIVYSSGTTGKPKGIVCPHR 184
+ + P V L DD+A I+Y+SGT PKG + HR
Sbjct: 135 ILSLVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHR 194
Query: 185 GAVHAY 190
+ Y
Sbjct: 195 ALIAEY 200
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 73.8 bits (182), Expect = 5e-15
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 17/195 (8%)
Query: 22 QAKRTPDK----IAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+A PD + D + ++T+ +LD + L G G V +L L++
Sbjct: 2 RAAAQPDARYTFLFDDDDEEETLTYAELDRRARAIAARLQALGA-PGDRVLLLAPPGLDF 60
Query: 78 TISYIAIHKAGGGYLPLETSYPP-------ALLESVLDDAKPSIVITKGEYMDRLER-TS 129
++ AG +P PP A L ++L DA V+T + L +
Sbjct: 61 VAAFFGCLYAGAIAVPA---PPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALA 117
Query: 130 VPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHA 189
P L + ++ P DDIA++ Y+SG+TG PKG++ H +
Sbjct: 118 APAALLLLLIAADDLAALAAADWRP-PPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLAN 176
Query: 190 YKWRHRAYPYDEDDR 204
+ RA+ D DD
Sbjct: 177 LRAIARAFGLDPDDV 191
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 72.0 bits (177), Expect = 2e-14
Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 32/203 (15%)
Query: 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
E L R A+ P + A++ + G IT+ +LDE +D L +G G V V +
Sbjct: 32 ERPLTEYLRAWARERPQRPAIIFY-GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFL 90
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP 131
C ++ I + I K G ++P+ + L L+DA +++ + +E+
Sbjct: 91 PNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVR-A 149
Query: 132 KVKLEN-------DFL-------------------SKMISENEKLHN----VDFPQVGLD 161
+ L + D L + I L V P LD
Sbjct: 150 ETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALD 209
Query: 162 DIAYIVYSSGTTGKPKGIVCPHR 184
+A + Y+ GTTG PKG R
Sbjct: 210 ALAALNYTGGTTGMPKGCEHTQR 232
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 71.4 bits (175), Expect = 2e-14
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
Query: 16 HYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
M R A R PD A+VD G +T+ +L + V L +G V V+
Sbjct: 4 FEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNS 63
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPA-LLESVLDDAKPSIVITKGEYMDRLERTSVPKV 133
++ I+ +A+H+ G + PA + E + + VI + S V
Sbjct: 64 VDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGV 123
Query: 134 KLENDFLSKMISENEKLHN---VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
++ L ++ E ++ P + A++ Y+SGTTG PKG V P R A
Sbjct: 124 RVL--ALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAA 177
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 70.8 bits (174), Expect = 4e-14
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
+A TPD+ A+ + + +TF +L E V L G G V +LM+ +E +
Sbjct: 11 RAFLTPDRTAIEF-EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVI 69
Query: 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV-KLENDFL 140
A+ + G + L T L LDDA+ +IT ++ +L K +L N
Sbjct: 70 HALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPK 129
Query: 141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
+ + E F LD++A I+Y+SGTTGKPKG++
Sbjct: 130 EEAEIQEE------FD---LDEVATIMYTSGTTGKPKGVI 160
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 70.4 bits (173), Expect = 7e-14
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 37/235 (15%)
Query: 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
A++++ R+ + DKIA+ DG S+T+ +L E + G L G + V +++
Sbjct: 6 AVYFLDRHLNEGRGDKIALYYDDG-SLTYGELQEEVNRWGNALRELGIERENRVLLILLD 64
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV 133
E+ ++ K G +P+ T P L+D++ +++ E + L K
Sbjct: 65 TPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVL------KP 118
Query: 134 KLEND-FLSKMI----SENEKLHNVDFPQVGL----------DDIAYIVYSSGTTGKPKG 178
L+ D L +I + L DD+A+ +YSSG+TG+PKG
Sbjct: 119 ALQKDPHLRHVIVVGGAGPGALSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKG 178
Query: 179 IVCPHRGAVHAYKWRHRAYPYD-----EDDR--EACNVFFVW----EMLRPLTQG 222
+V H H AY + EDD A +FF + + PL+ G
Sbjct: 179 VVHLH----HDMLVTAEAYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVG 229
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 69.8 bits (171), Expect = 8e-14
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
LH++ + A R PD A+V HD R++T+ L E + + L G G V + +++
Sbjct: 2 LHHLLEDAAARLPDATALVHHD-RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKR 60
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVPK 132
LE + AGG ++P+ + +L D +++T E +D L
Sbjct: 61 LETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHD 120
Query: 133 VK--LENDFLSKMISENEKLHNVDFPQ------------VGLDDIAYIVYSSGTTGKPKG 178
++ + + + +P+ V D+A I+Y+SG+TG+PKG
Sbjct: 121 LRTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKG 180
Query: 179 IVCPHRGAV 187
+V HR V
Sbjct: 181 VVLSHRNLV 189
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 66.6 bits (163), Expect = 1e-12
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 54/208 (25%)
Query: 35 HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL 94
+S+T+++L + + L G G V +L+ E +++A KAG + L
Sbjct: 6 CGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVAL 65
Query: 95 ETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVD 154
P LE +LDD+ ++++T+
Sbjct: 66 NPLLTPQDLEHILDDSGAALLVTEA----------------------------------- 90
Query: 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD-----EDDR--EAC 207
DDIAY +Y+SGTTGKPKG++ HR + A+ + DR +
Sbjct: 91 ------DDIAYWLYTSGTTGKPKGVMHRHRDPL----TFAEAFARELLGLQPGDRIFSSS 140
Query: 208 NVFFVWEMLRPLTQGIPMYVISDEVIYD 235
+FF + + L P++ + V+
Sbjct: 141 KLFFAYGLGNSLL--FPLFSGASAVLLP 166
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 66.5 bits (163), Expect = 1e-12
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 31/153 (20%)
Query: 36 DG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
DG R+ T+ +L + + + L G G VG+ M E ++ +AI K G +P
Sbjct: 2 DGSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVP 61
Query: 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNV 153
+ + + P + + L DA+ ++IT ++ R +R +
Sbjct: 62 IFSGFGPDAVATRLQDAEAKVLITADGFLRRGKRVDL----------------------- 98
Query: 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
DD A I+Y+SGTTGKPKG V H G
Sbjct: 99 ------KDDPAMIIYTSGTTGKPKGTVHTHAGF 125
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 66.4 bits (163), Expect = 1e-12
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 16/189 (8%)
Query: 19 FRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
F A R PD+ A++ + +SI++ +L+ + + +G G V +LME E+
Sbjct: 43 FEEAAARHPDRPALLF-EDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYL 101
Query: 79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE-------RTSVP 131
+++ + K G L T A+L L+ +I E ++ E R
Sbjct: 102 AAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRL 161
Query: 132 KVKLENDFLSKMISENEKLHNVDFP--------QVGLDDIAYIVYSSGTTGKPKGIVCPH 183
V + E+ P V D A+ +Y+SGTTG PK V H
Sbjct: 162 WVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSH 221
Query: 184 RGAVHAYKW 192
+ A
Sbjct: 222 MRWLKAMGG 230
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 64.9 bits (159), Expect = 4e-12
Identities = 41/176 (23%), Positives = 62/176 (35%), Gaps = 29/176 (16%)
Query: 9 YDAEGA-----LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63
Y A G L + A R PD+ AVVD R +T+++LD D + L+ G
Sbjct: 6 YRAAGYWGDQTLGDLLAANAARHPDRTAVVD-GPRRLTYRELDAAVDRLAAGLLALGIGP 64
Query: 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
G V V + E+ I Y A+ K G + ++ + ++ I +
Sbjct: 65 GDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADRFSG 124
Query: 124 RLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
+ + E L D+A S GTTG PK I
Sbjct: 125 --------------FDYAALAREL---------LEELPDVALFQLSGGTTGLPKLI 157
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 65.2 bits (159), Expect = 4e-12
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 22 QAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTIS 80
A+ P ++A VD GR T+ +LD + L +GC+ G + VL +
Sbjct: 4 HARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVAL 63
Query: 81 YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFL 140
+ A + G Y+PL + L+++L DA+P ++ L +V + + + L
Sbjct: 64 HFACARVGAIYVPLNWRLSASELDALLQDAEPRLL---------LGDDAVAAGRTDVEDL 114
Query: 141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHA 189
+ I+ + L D P + + ++ I+++SGT+G+PKG++ R
Sbjct: 115 AAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQT 163
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 62.1 bits (151), Expect = 4e-11
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 36/153 (23%)
Query: 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
+++ +L E + V L + G G V L+ R E ++ +A + G Y+PL T++
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVG 159
P +E L + +V+T +L+
Sbjct: 61 PKAIEYRLGHSGAKVVVTNAANRGKLD--------------------------------- 87
Query: 160 LDDIAYIVYSSGTTGKPKGIVCPHRG--AVHAY 190
DD+ +Y+SGTTG PKG+ P A +AY
Sbjct: 88 -DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAY 119
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 61.5 bits (150), Expect = 5e-11
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 20/182 (10%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD+ AVV D R T+++ + + + L G G V VL ++ +
Sbjct: 18 PDRTAVVYGD-RRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPM 76
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE-----RTSVPKVKLENDFLS 141
AG +PL T + +L+ ++ ++ E++ E ++ + E +S
Sbjct: 77 AGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVIS 136
Query: 142 KMIS-----ENEKL---HNVDFPQVGLDD----IAYIVYSSGTTGKPKGIVCPHRGA-VH 188
+ E L + D + DD I+ + Y+SGTTG PKG+V HRGA ++
Sbjct: 137 PAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPIS-LNYTSGTTGNPKGVVYTHRGAYLN 195
Query: 189 AY 190
A
Sbjct: 196 AL 197
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 61.7 bits (150), Expect = 5e-11
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 41/205 (20%)
Query: 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
++++L E + L + G G V L+ R E ++ + K G Y PL +++
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVG 159
P + L+ + ++IT E ERT
Sbjct: 61 PEPIRDRLELGEAKVLITTPEL---YERT------------------------------D 87
Query: 160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------ 213
+D A + ++SGTTGKPKG++ HR V Y DD C W
Sbjct: 88 PEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADPGWVTGTSY 147
Query: 214 EMLRPLTQGIPMYVISDEVIYDPPR 238
++ PL G+ + V DE +D R
Sbjct: 148 GIIAPLLNGVTLVV--DEGEFDAER 170
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 61.4 bits (150), Expect = 7e-11
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL-ETSY 98
I++K+++E +G+ L G G +G+ E EW I+ A +PL +T
Sbjct: 6 ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLG 65
Query: 99 PPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV 158
A+ E +L++ + SIV +V E L ++ +N+ P
Sbjct: 66 EEAI-EYILNETEISIVFC----------DAVKVYSFEE--LEELGKKNKVPPTPPKP-- 110
Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPHR---GAVHAYKWRHRAYPYDED 202
+D+A I+Y+SGTTG PKG++ H V + D
Sbjct: 111 --EDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTD 155
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 61.2 bits (149), Expect = 7e-11
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 43/172 (25%)
Query: 34 DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
D TF QL + ++ + L G G VGV + + E I+++A++K G +P
Sbjct: 1 DGTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVP 60
Query: 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNV 153
L + P +E L D+ +++T G
Sbjct: 61 LSVLFGPDAVEHRLRDSGARVLVTDGS--------------------------------- 87
Query: 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR---GAVHAYKWRHRAYPYDED 202
DD A ++Y+SGTTG PKG + HR G + + P D
Sbjct: 88 -------DDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGD 132
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 60.9 bits (148), Expect = 1e-10
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 13/173 (7%)
Query: 21 NQAKRTPDKIAVV-DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79
A+ TPDK AV+ G +T+++LDE ++ + + G G V + ME L +
Sbjct: 5 IHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLE 64
Query: 80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD--RLERTSVPKVKLEN 137
A ++G Y + + PA ++DD+ +IT +D R P V+
Sbjct: 65 VCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRH-- 122
Query: 138 DFLSKMISENEKLHNV-----DFPQVGLDDI---AYIVYSSGTTGKPKGIVCP 182
+ E E P + D ++YSSGTTG+PKGI P
Sbjct: 123 RLVLDGDGELEGFVGYAEAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRP 175
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 58.8 bits (143), Expect = 5e-10
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 30/146 (20%)
Query: 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98
+T+ +LD+ D + L G G V + E+ + Y+A + G P+ Y
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60
Query: 99 PPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV 158
L +L A+ ++ E+ D+ +
Sbjct: 61 RERELGFILRQARARVLFVPDEF-----------------------------RGFDYAAM 91
Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPHR 184
DD+A ++Y+SGTTG+PKG++ H
Sbjct: 92 P-DDVALLLYTSGTTGEPKGVMHTHN 116
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 58.1 bits (141), Expect = 7e-10
Identities = 44/207 (21%), Positives = 65/207 (31%), Gaps = 54/207 (26%)
Query: 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
TF +L E +D +L + G G V VL+ R E + K G ++P T P
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGL 160
+ L+ A ++T
Sbjct: 62 KDIRYRLERAGARAIVTSA----------------------------------------- 80
Query: 161 DDIAYIVYSSGTTGKPKGIVCPHR-GAVHAYKWRHRAYPYD--EDDREACNVFFVW---- 213
DD A + ++SGTTG PK ++ H H AY D DD W
Sbjct: 81 DDPALLYFTSGTTGLPKMVLHTHSYPLGHLVT---GAYWLDLRPDDLHWTIADPGWAKGA 137
Query: 214 --EMLRPLTQGIPMYVISDEVIYDPPR 238
+ P G ++V +D R
Sbjct: 138 WSSLFAPWLLGAAVFV-YHGRRFDAER 163
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 58.5 bits (142), Expect = 7e-10
Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 30/184 (16%)
Query: 24 KRTPDKIAVVDHDGRSITFKQLDEWTDIVGTY---LINQGCIVGSTVGVLMERCLEWTIS 80
KR PD+ A+V +T+ QL D + Y G G V +L E ++
Sbjct: 23 KRYPDRPALVL-GDTRLTYGQL---ADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMA 78
Query: 81 YIAIHKAGGGYLPLETSYPPALLES---VLDDAKPSI-VITKGEYMDRLE--RTSVPKVK 134
A AG L +P L+ VL+DA S ++ +++R VP +K
Sbjct: 79 IGAAQLAGLRRTAL---HPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLK 135
Query: 135 ---------LENDFLSKMIS-ENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
D L+ L P DIA + Y+ GTTGKPKG++ HR
Sbjct: 136 HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALP----PDIAGLAYTGGTTGKPKGVMGTHR 191
Query: 185 GAVH 188
Sbjct: 192 SIAT 195
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 58.0 bits (141), Expect = 1e-09
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
T+ Q+ + + L + G G + +L + C EW I+ +AI AG +PL +
Sbjct: 5 HEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPT 64
Query: 98 YPPALLESVLD--DAKPSIV-------ITKGEYMDRLERTSVPKVKLENDFL--SKMISE 146
+ VL+ DAK V K + L + D +++
Sbjct: 65 LTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDLLAA 124
Query: 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
E L P +D+A IVY+SGTTG+PKG++ A + +DR
Sbjct: 125 TEPLQGR--PLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPNDR 180
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 57.4 bits (139), Expect = 1e-09
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 34 DHDGRSI--TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91
G ++ T+ QL VG L Q G V +L + +++ + A KAG
Sbjct: 61 SAAGCAVELTWTQLGVRLRAVGARL-QQVAGPGDRVAILAPQGIDYVAGFFAAIKAGTIA 119
Query: 92 LPLETSYPPAL------LESVLDDAKPSIVITKG-------EYMDRLERTSVPKVKLEND 138
+PL + P L L++ L DA+P++V+T ++ L R P+V +
Sbjct: 120 VPL---FAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDA 176
Query: 139 FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
+ + ++ DD++++ Y+SG+T P G+ HR
Sbjct: 177 I------PDSAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAV 218
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 57.2 bits (138), Expect = 2e-09
Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 23/242 (9%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
Y+A A + RN + K A +D D S+++ +L+ +G L G V
Sbjct: 2 KYNA--AEDLLDRNVVEGRGGKTAFID-DISSLSYGELEAQVRRLGAALRRLGVKREERV 58
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY------ 121
+LM +++ I+++ +AG + L T +L+D++ +V GE
Sbjct: 59 LLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKA 118
Query: 122 ----MDRLERTSVPKVKL--ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGK 175
LE V E + +E+E+ DD A+ +YSSG+TG
Sbjct: 119 ALGKSPHLEHRVVVGRPEAGEVQLAELLATESEQFKPA---ATQADDPAFWLYSSGSTGM 175
Query: 176 PKGIVCPHRGAVH-AYKWRHRAYPYDEDDR--EACNVFFVWEMLRPLTQGIPMYVISDEV 232
PKG+V H A + EDD A +FF + + LT PM V + V
Sbjct: 176 PKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALT--FPMSVGATTV 233
Query: 233 IY 234
+
Sbjct: 234 LM 235
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 56.9 bits (138), Expect = 2e-09
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 18/186 (9%)
Query: 15 LH-YMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
LH Y F ++ D+ ++D GR T+ ++ + V L G G V +L+
Sbjct: 25 LHDYCFERLSEF-SDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLP 83
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS--- 129
C E+ ++++ + G Y PA + + ++IT+ Y+D+L+ +
Sbjct: 84 NCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDD 143
Query: 130 -VPKVKLENDF-----LSKMISENEKLHNVDFPQVGL--DDIAYIVYSSGTTGKPKGIVC 181
V V +++ S++ +E + P+V + DD+ + YSSGTTG PKG++
Sbjct: 144 GVTVVTIDDPPEGCLHFSELTQADEN----ELPEVEISPDDVVALPYSSGTTGLPKGVML 199
Query: 182 PHRGAV 187
H+G V
Sbjct: 200 THKGLV 205
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 56.5 bits (137), Expect = 3e-09
Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 25/185 (13%)
Query: 18 MFRNQAKRTPDKIAV------VDHDGR--SITFKQLDEWTDIVGTYLINQGCIVGSTVGV 69
+ R +A PD A D G ++T+ QL T V L G G +
Sbjct: 6 LLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHGS-TGDRAVI 64
Query: 70 LMERCLEWTISYIAIHKAGGGYLPLETSYPPALLE---SVLDDAKPSIVITK-------G 119
L + LE+ ++++ +AG +PL A E +VL D PS+V+T
Sbjct: 65 LAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVT 124
Query: 120 EYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
EY+ S P V +E D L + S D L AY+ Y+SG+T P G+
Sbjct: 125 EYVAPQPGQSAPPV-IEVDLLD-LDSPRG----SDARPRDLPSTAYLQYTSGSTRTPAGV 178
Query: 180 VCPHR 184
+ HR
Sbjct: 179 MVSHR 183
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 55.1 bits (133), Expect = 8e-09
Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 13/185 (7%)
Query: 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
+E L M QA+R PD+ +V G T+ + L G G V ++
Sbjct: 19 SERTLPAMLARQAERYPDRPLLVF-GGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALM 77
Query: 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
+E+ ++ G +P+ T+ LE +L ++ +++ + + LE
Sbjct: 78 CGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADP 137
Query: 131 PKVKLENDFLSKMISENE---KLHNVDFPQ---------VGLDDIAYIVYSSGTTGKPKG 178
+ L +L + P V D A I+Y+SGTTG KG
Sbjct: 138 GDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKG 197
Query: 179 IVCPH 183
+ CPH
Sbjct: 198 VCCPH 202
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 54.9 bits (133), Expect = 1e-08
Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 48/152 (31%)
Query: 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98
S+TF++LD+ + L G G V +L + +E+ + ++A+ + G LPL
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60
Query: 99 PPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV 158
P L+ L D Q
Sbjct: 61 PQEELQQQLADL----------------------------------------------QP 74
Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
LD A I+++SG+TGKPK +V H H
Sbjct: 75 DLDRPATIIFTSGSTGKPKAVV--HTWGNHLA 104
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 54.9 bits (133), Expect = 1e-08
Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 22/177 (12%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+R PD+ A++D G ++T+ +LDE ++ + L+ G G V VL + ++
Sbjct: 59 ARRAPDRAALIDERG-TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALY 117
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
A K G + L T + L V ++ E+ D L + + L
Sbjct: 118 AAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLS-----ALPPDLGRLRA 172
Query: 143 MISENEKLHNVDFPQVGLDDIA----------------YIVYSSGTTGKPKGIVCPH 183
+ LDD+ ++ +SGTTG PKG P
Sbjct: 173 WGGNPDDDEPSGSTDETLDDLIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPE 229
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 54.4 bits (131), Expect = 1e-08
Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 22/170 (12%)
Query: 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
T++ LD + L QG GS V ++ + +E + A G L T
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLH------NVD 154
+ L+D +++T LE E DF + + E +
Sbjct: 61 NERTNQLEDLDVQLLLTD----SLLE---------EKDFQADSLDRIEAAGRYETSLSAS 107
Query: 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
F +D IA ++++SGTTGKPK + R + + EDD
Sbjct: 108 FN---MDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDN 154
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 53.9 bits (130), Expect = 2e-08
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 34/185 (18%)
Query: 37 GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
G++IT+ +LDE + + +L ++G G+ V ++M L++ ++ A+ +AG + +
Sbjct: 46 GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNP 105
Query: 97 SYPPALLESVLDDAKPSIVITKGEYMDRLE----RTSVPKVKLEN--DFL---------- 140
Y P LE L D+ ++ + ++ +T+V V + + D L
Sbjct: 106 LYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFV 165
Query: 141 ----SKMISENEKLHNVDF--------------PQVGLDDIAYIVYSSGTTGKPKGIVCP 182
KM+ +V F ++G DD+A++ Y+ GTTG KG
Sbjct: 166 VRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLL 225
Query: 183 HRGAV 187
HR V
Sbjct: 226 HRNIV 230
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 53.7 bits (130), Expect = 2e-08
Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 21/193 (10%)
Query: 18 MFRNQAKRTPDK-IAVVDHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ + A+ D+ I DG T+ + L + G G V L
Sbjct: 1 ILEHAARYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNT 60
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPK 132
Y A+ G L P + +++ A+ ++ +++ LE +P
Sbjct: 61 HRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPT 120
Query: 133 VKLENDFLSKMISENEKLHNV--------------DFPQVGLDDIAYIVYSSGTTGKPKG 178
VK L NV ++P++ + A + Y+SGTTG PKG
Sbjct: 121 VK-AVVVYDDADMPETSLPNVYAYEELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKG 179
Query: 179 IVCPHRGAV-HAY 190
+V HR V H
Sbjct: 180 VVYSHRSLVLHTL 192
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 53.7 bits (130), Expect = 3e-08
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 22/184 (11%)
Query: 28 DKIA---VVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84
DK+A + T+K+L E ++ L G G V + M R E + +
Sbjct: 59 DKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGA 118
Query: 85 HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK---------- 134
K G PL ++ + L+D++ ++IT ++R +P +K
Sbjct: 119 LKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVE 178
Query: 135 -LEN--DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY- 190
DF + M +++ D +D A + Y+SG+TGKPKG++ H + Y
Sbjct: 179 EGPGTLDFNALMEQASDEF---DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQ 235
Query: 191 --KW 192
K+
Sbjct: 236 TGKY 239
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 53.8 bits (130), Expect = 3e-08
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYL----INQGCIVGSTVGVL 70
L + + AKR ++AV D G +++ + + G + + VG+L
Sbjct: 617 LAEAWIDTAKRNWSRLAVADSTGGELSYGKA-----LTGALALARLLKRELKDEENVGIL 671
Query: 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
+ + ++ +A+ AG + L + A L+S ++ A+ VIT +++++L+
Sbjct: 672 LPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGF 731
Query: 131 -------PKVKLENDFLSKMISENEK--------------LHNVDFPQVGLDDIAYIVYS 169
KV D +K IS+ +K L + P DD A I++S
Sbjct: 732 DLELPENVKVIYLEDLKAK-ISKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFS 790
Query: 170 SGTTGKPKGIVCPHR 184
SG+ G+PKG++ H
Sbjct: 791 SGSEGEPKGVMLSHH 805
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 53.2 bits (128), Expect = 3e-08
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD A+ G + T+++LD+ + L +G G V +LM E+ S +A +
Sbjct: 31 PDAPAL-RFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANM 89
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPKVKL--------E 136
G +P+ P + ++ D +V+T+ R VP + +
Sbjct: 90 LGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD 149
Query: 137 NDFLS--KMISENEKLHN-VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
+ L +++E H VD P D A I+Y+SGTTG+PKG V H
Sbjct: 150 DSVLGYEDLLAEAGPAHAPVDIPN---DSPALIMYTSGTTGRPKGAVLTH 196
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 53.3 bits (128), Expect = 4e-08
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 40/196 (20%)
Query: 37 GRSITFKQLDEWTDIVGTYLINQGCIV-GSTVGVLMERCLEWTISYIAIHKAGGGYLPLE 95
G++IT+++ D+ + YL+ + + G V ++M CL++ I+ + +AG + +
Sbjct: 48 GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVN 107
Query: 96 TSYPPALLESVLDDAKPSIVITKGEYMDRLER----TSV--------------PKVKLEN 137
Y P L+ L D+ S+++ + +++ T V PK L N
Sbjct: 108 PLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVN 167
Query: 138 ---DFLSKMISE---------NEKL-----HNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
++ K++ E E L H++ Q+ DDIA++ Y+ GTTG KG +
Sbjct: 168 FVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAM 227
Query: 181 CPHRGAV----HAYKW 192
HR V A++W
Sbjct: 228 LTHRNLVANMQQAHQW 243
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 52.5 bits (126), Expect = 6e-08
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 27 PDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIV-GSTVGVLMERCLEWTISYIAI 84
A++D G SI++ +L + L + + G V +L+ + + + ++A+
Sbjct: 53 NGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAV 112
Query: 85 HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL-EN-DFLSK 142
GG + S ++ + D + T E +++L VP + + EN DF SK
Sbjct: 113 LSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSK 172
Query: 143 MISENEKLHNV---DF-----PQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
I E K + + DF P + DD+A I+YSSGTTG KG+V HR
Sbjct: 173 RI-EFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHR 221
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 52.2 bits (126), Expect = 8e-08
Identities = 43/193 (22%), Positives = 68/193 (35%), Gaps = 40/193 (20%)
Query: 24 KRTPDKIAVV----DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79
D A+ D + R I++ +L + L + G G V + E I
Sbjct: 67 HADNDPAAIYAAGEDGERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVI 126
Query: 80 SYIAIHKAGGGYLPLETSYPPAL-LESVLDDAK---PSIVIT------KGEYMDRLER-- 127
+ +A G + +S P +E+VLD P ++ G+ DR E+
Sbjct: 127 AMLATASIGAIW----SSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIA 182
Query: 128 ------TSVPKVKLENDFLSKMISENEKLHNVD--------------FPQVGLDDIAYIV 167
S+ V + S K + F ++ D +I+
Sbjct: 183 EIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWIL 242
Query: 168 YSSGTTGKPKGIV 180
YSSGTTG PK IV
Sbjct: 243 YSSGTTGLPKCIV 255
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 52.3 bits (125), Expect = 8e-08
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 22 QAKRTPDKIAVVDHDGRS-ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTIS 80
QA++ P+ IA+ DG S + +++L + L Q GS V V+ + E +S
Sbjct: 23 QARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLS 82
Query: 81 YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFL 140
+A K G + + + P A +E P+ + ++ ++VP+ +
Sbjct: 83 VLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPG--SKMASSAVPEALHSIPVI 140
Query: 141 SKMISEN--EKLHNVDF------PQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
+ I+ E H++D G +D ++++SGTTG+PK ++ +R
Sbjct: 141 AVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANR 192
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 51.7 bits (125), Expect = 9e-08
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
DD A I+Y+SGTTG+PKG++ HR + D
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDV 44
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 51.5 bits (124), Expect = 1e-07
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREAC------NVFFVWEM 215
D A+I+Y+SGTTGKPKG+V HR + + +A E D V +
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 216 LRPLTQGIPMYVISDEVIYDPPRLTSGWVRL 246
L L G V V+Y+ ++ L
Sbjct: 61 LGALLAG--GTV----VLYEGFPFPLSFLEL 85
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 51.5 bits (124), Expect = 1e-07
Identities = 50/221 (22%), Positives = 79/221 (35%), Gaps = 50/221 (22%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
DY + L ++ N R D+ A+ D G + T+ +L + L G G V
Sbjct: 28 DYG-DTTLVDLYDNAVARFGDRPAL-DFFGATTTYAELGKQVRRAAAGLRALGVRPGDRV 85
Query: 68 GVLMERCLEWTISYIAIHKAGGGYL---PLETSYPPALLESVLDDAKPSIVITKGEYMDR 124
+++ C + +++ A+ + G + PL Y LE +D + I +
Sbjct: 86 AIVLPNCPQHIVAFYAVLRLGAVVVEHNPL---YTAHELEHPFEDHGARVAIVWDKVAPT 142
Query: 125 LERTSVPKVKLENDFLSKMISE-------------------NEKLH-------------- 151
+ER LE MI+ L
Sbjct: 143 VERL-RRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVD 201
Query: 152 --------NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
+V P+ DD+A I+Y+SGTTGKPKG HR
Sbjct: 202 AAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHR 242
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 50.9 bits (122), Expect = 2e-07
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 20/175 (11%)
Query: 23 AKRTPDKIAVV--DHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
A PDK+A++ D DG + TF L ++++ + G G TV + ++R E+
Sbjct: 27 ADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFW 86
Query: 79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE-----YMD--RLERTSVP 131
S +A+HK G +P + ++ A +++ GE ++D E S
Sbjct: 87 FSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPT 146
Query: 132 K-VKLENDFLSKMISENEKLHNV--DFPQ------VGLDDIAYIVYSSGTTGKPK 177
V + + I ++++ N DF + DDI + ++SGTTG PK
Sbjct: 147 LLVLVGDPVPEGWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPK 201
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 50.6 bits (121), Expect = 3e-07
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 20 RNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79
R+QA R PD IA++ R ++++LD+ D + L G G T V + E+ I
Sbjct: 30 RDQAARYPDAIAIIC-GNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYI 88
Query: 80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM----DRLERTSVPKV-K 134
+ A+ K G + S+ + L + +P++ I + D R K+
Sbjct: 89 VFFALLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPT 148
Query: 135 LENDFLSKMISENEKLH-------NVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
L N ++ E E V FP D++A+ S G+TG PK I
Sbjct: 149 LRNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLI 200
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 50.4 bits (120), Expect = 3e-07
Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 37/214 (17%)
Query: 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVG 68
YD + LH A R P+K A+ G+ ITF + YL G G V
Sbjct: 21 YDIQ-PLHKYVEQMASRYPEKKAL-HFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVA 78
Query: 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV---------ITKG 119
+++ C + I Y AGG + Y LE L D+ ++ +T
Sbjct: 79 IMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNV 138
Query: 120 EYMDRLERTSV---------------PKVKLENDFLSKMISENEKLH-----------NV 153
+ ++E V P V+ + L +SE+E +H V
Sbjct: 139 QSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGV 198
Query: 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
+ P +D+A + Y+ GTTG PKG++ H+ V
Sbjct: 199 EVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLV 232
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 50.3 bits (121), Expect = 4e-07
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 40/192 (20%)
Query: 23 AKRTPDKIAVVDHDGR---------SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
A+ PD++AV GR ++F +LD +D + L G I VLM
Sbjct: 16 AQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAG-IGRGMRAVLMVT 74
Query: 74 -CLEWTISYIAIHKAGGGYLPLETSYPPALLE---------SVLDDAKPS--IVITKGEY 121
LE+ A+ KAG P L++ L +A+P I I K
Sbjct: 75 PSLEFFALTFALFKAGA---------VPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHL 125
Query: 122 MDRL----ERTSVPKVKLENDFLSKM-----ISENEKLHNVDFPQVGLDDIAYIVYSSGT 172
RL + + V + L + + + DD+A I+++SG+
Sbjct: 126 ARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGS 185
Query: 173 TGKPKGIVCPHR 184
TG PKG+V H
Sbjct: 186 TGTPKGVVYTHG 197
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 50.0 bits (120), Expect = 4e-07
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 9/51 (17%)
Query: 134 KLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
L N FL I++ + L ++ DDIA+I +SSG+TG+PKG++ H+
Sbjct: 88 ILNNPFL---ITDRDSLLSL------PDDIAFIQFSSGSTGEPKGVILTHK 129
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 50.0 bits (120), Expect = 4e-07
Identities = 56/206 (27%), Positives = 78/206 (37%), Gaps = 48/206 (23%)
Query: 26 TPDKIAV-----VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTIS 80
D+IA+ V R+ T+ +L + + L G + G V + M E I+
Sbjct: 55 RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIA 114
Query: 81 YIAIHKAG-------GGYLPLETSYPPALLESVLDDAKPSIVITKG---------EYMDR 124
+A + G GG+ E L S +DDAKP +++T Y
Sbjct: 115 MLACARIGAIHSVVFGGFASKE-------LASRIDDAKPKLIVTASFGIEPGRVVPYKPL 167
Query: 125 LE-----------------RTSVP-KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYI 166
L+ R VP +K D K VD V D YI
Sbjct: 168 LDKALELSQHKPHKVLILNRGQVPAPLKPGRDLDWA--ELMAKARPVDCVPVESTDPLYI 225
Query: 167 VYSSGTTGKPKGIVCPHRGAVHAYKW 192
+Y+SGTTGKPKG+V G A KW
Sbjct: 226 LYTSGTTGKPKGVVRDTGGYAVALKW 251
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 49.3 bits (118), Expect = 7e-07
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 37/213 (17%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGST 66
+ D +L MF R D+ A ++ G +TF++L+E + YL N G G
Sbjct: 18 NPDRYQSLVDMFEQAVARYADQPAFINM-GEVMTFRKLEERSRAFAAYLQNGLGLKKGDR 76
Query: 67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
V ++M L++ I+ I +AG + + Y P LE L+D+ ++ + LE
Sbjct: 77 VALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLE 136
Query: 127 R----TSVPKVKLEN--DFLS---------------KMISENEKLHNVDF---------- 155
+ T V V L D LS +++ + + F
Sbjct: 137 KVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRM 196
Query: 156 ----PQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
P++ +D+A++ Y+ GTTG KG + HR
Sbjct: 197 QYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHR 229
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 49.0 bits (117), Expect = 7e-07
Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A P+KIA+ ++D R +T+K E V +L N+ T+ +L+E +E+ +
Sbjct: 11 ASLQPNKIAIKEND-RVLTYKDWFESVCKVANWL-NEKESKNKTIAILLENRIEFLQLFA 68
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
AG +PL+ + L+ L + +++T+ ++ L ++++ +
Sbjct: 69 GAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEIDE--WKR 126
Query: 143 MISEN-EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
MI + ++ Q + Y+ ++SG+TGKPK + + +H++
Sbjct: 127 MIEKYLPTYAPIENVQ---NAPFYMGFTSGSTGKPKAFLRAQQSWLHSF 172
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 49.1 bits (117), Expect = 1e-06
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
+T+K++ + +G+ + ++G G G+ C EW I+ A + G Y+PL +
Sbjct: 78 LTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLG 137
Query: 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLE-------NDFLSKMISENEKL-- 150
+E +++ A+ SI + + + + +PK D S+ E E+L
Sbjct: 138 ANAVEFIINHAEVSIAFVQESKISSI-LSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGV 196
Query: 151 -------------HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
+ + P DI I+Y+SGTTG+PKG++ +R
Sbjct: 197 SCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNR 243
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 48.6 bits (117), Expect = 1e-06
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 153 VDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
++F V D +I+YSSGTTG PK IV
Sbjct: 255 LEFEPVPFDHPLWILYSSGTTGLPKCIV 282
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 48.1 bits (114), Expect = 2e-06
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 29/167 (17%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A R P + A++D DG ++++++L T+ + L G G VGV+ + +
Sbjct: 45 AARWPGRTAIIDDDG-ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
A+ G +P+ T + L + L S V+ E+ +R+
Sbjct: 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGA-------------- 149
Query: 143 MISENEKLHNVDFPQVGLDDIA----------YIVYSSGTTGKPKGI 179
++ + +D G ++ ++ +SGTTGKPKG+
Sbjct: 150 ----DDAVAVIDPATAGAEESGGRPAVAAPGRIVLLTSGTTGKPKGV 192
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 47.5 bits (114), Expect = 2e-06
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVH-AYKWRHRAYPYDEDDREACNV--FF-----V 212
DD A I Y+SGTTG+PKG + HR ++ Y R E DR F V
Sbjct: 2 DDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL-TEGDR-TLVPVPLFHVFGLV 59
Query: 213 WEMLRPLTQGIPMYVISDEVIYDPPR 238
+L LT G + ++ +DP
Sbjct: 60 LGVLASLTAGATLVLME---KFDPGA 82
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 47.5 bits (114), Expect = 3e-06
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 37/203 (18%)
Query: 18 MFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
+ A R PD+ A+V D G T+++ +E D + L+ G G VG+ E
Sbjct: 21 LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80
Query: 77 WTISYIAIHKAGGGYLPLETSYPPALLESVLD--DAKPSIVITKG----EYMD------- 123
W ++ A K G + + +Y + LE L+ K +++ G +Y+
Sbjct: 81 WVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCK-ALIAADGFKDSDYVAMLYELAP 139
Query: 124 --------RLERTSVPKVK----LENDFLSKMISENEKLH---NVDFPQV-----GL--D 161
+L+ +P+++ L ++ M++ +E L VD ++ L D
Sbjct: 140 ELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPD 199
Query: 162 DIAYIVYSSGTTGKPKGIVCPHR 184
D I Y+SGTTG PKG HR
Sbjct: 200 DPINIQYTSGTTGFPKGATLTHR 222
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 46.7 bits (111), Expect = 6e-06
Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 35/246 (14%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+ PD +A++D + R ++ +L D + +L QG G V V + C+EW + ++
Sbjct: 20 ARARPDAVALID-EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFL 78
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY-----------MDRLERTSVP 131
A + G + + T Y + +L + ++ + + +
Sbjct: 79 ACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLR 138
Query: 132 KVKLENDFLSKMISENEKLHNVDFPQV-------------GLDDIAYIVY-SSGTTGKPK 177
+ + D + V + D +++ +SGTT PK
Sbjct: 139 AIAVV-DDAADATPAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPK 197
Query: 178 GIVCPHRGAVHAYKWRHRAYPYDEDDR-----EACNVFFVWEMLRPLTQGIPMYVISDEV 232
++ + + RAY YD C VF +L L G P+ E
Sbjct: 198 LVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVC---EP 254
Query: 233 IYDPPR 238
++D R
Sbjct: 255 VFDAAR 260
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 46.1 bits (110), Expect = 8e-06
Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 45/186 (24%)
Query: 89 GGYLPLETSYPPAL---------LESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDF 139
GG++P+ + PP L ++ + +++T + L L
Sbjct: 87 GGFVPVPVAVPPTYDEPNAAVAKLRNIWELLGSPVILTDAALVAALAG-------LRTRA 139
Query: 140 LSKMI--SENEKLHNV----DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR 193
+ + E+L + DD A ++ +SG+TG PK +V HR +
Sbjct: 140 GLEALRVLAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGT 199
Query: 194 HRAYPYDEDDREACNVFFVWEM------------LRPLTQGIPM-YVISDEVIYDPPRLT 240
+ + DD V W M LR + G +V +D ++ DP R
Sbjct: 200 VQVNGFTPDD-----VSLNW-MPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILADPLR-- 251
Query: 241 SGWVRL 246
W+ L
Sbjct: 252 --WLDL 255
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 45.9 bits (109), Expect = 1e-05
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 22/190 (11%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+R PD+ ++D G ++T+++LDE +D + L VG++ + + +
Sbjct: 53 AQRCPDRPGLIDELG-TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALL 111
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT---------SVPKV 133
A ++ G L L TS+ L V+ VI E+ ++R V
Sbjct: 112 AANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWT 171
Query: 134 KLENDFLS-KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK- 191
++D +I+ + + G I+ +SGTTG PKG G + K
Sbjct: 172 DEDHDLTVEVLIAAHAGQRPEPTGRKG----RVILLTSGTTGTPKGARRSGPGGIGTLKA 227
Query: 192 ------WRHR 195
WR
Sbjct: 228 ILDRTPWRAE 237
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 45.5 bits (108), Expect = 1e-05
Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 37/165 (22%)
Query: 37 GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
R TF++L+E+++ V + QG G V + ME LE+ ++ + K G +ET
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIG-----VET 55
Query: 97 SY------PPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKL 150
+ +LL + +K +I +D L S
Sbjct: 56 ALINSNLRLESLLHCI-TVSKAKALIF--NLLDPLLTQS-------------------ST 93
Query: 151 HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH----RGAVHAYK 191
V D + +Y+SGTTG PK V H R A AY
Sbjct: 94 EPPSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYY 138
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 45.7 bits (109), Expect = 1e-05
Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 22/179 (12%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD+ AV+ H R T+ + + + L +G G TV VL+ ++ +
Sbjct: 32 PDRPAVI-HGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPM 90
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM----DRLERTSVPKVKLENDFLSK 142
AG L T A + +L + ++I E+ + L PK L D
Sbjct: 91 AGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKP-LVIDVDDP 149
Query: 143 MISENEKLHNVDF---------------PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
+ +D+ P D IA + Y+SGTTG PKG+V HRGA
Sbjct: 150 EYPGGRFIGALDYEAFLASGDPDFAWTLPADEWDAIA-LNYTSGTTGNPKGVVYHHRGA 207
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 45.7 bits (109), Expect = 1e-05
Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 23/184 (12%)
Query: 23 AKRTPDKIAVVDHDG----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-W 77
A+ TPD++ + + G R +T+ + + L++ G + +L +E
Sbjct: 5 ARETPDRVFLAERRGGGEWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHA 64
Query: 78 TISYIAIHKAGGGYLPLETSYP-----PALLESVLDDAKPSIVITKGEYM-----DRLER 127
++ A++ AG P+ +Y A L + D P V + L
Sbjct: 65 LLALAAMY-AGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGL 123
Query: 128 TSVPKVKLENDFLSKMISENEKLHN-----VD--FPQVGLDDIAYIVYSSGTTGKPKGIV 180
VP V + I+ L VD F VG D +A +++SG+TG PK ++
Sbjct: 124 AGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVI 183
Query: 181 CPHR 184
HR
Sbjct: 184 NTHR 187
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 44.5 bits (106), Expect = 2e-05
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 161 DDIAYIVYSSGTTGKPKGIVCPHR 184
DD+A I+Y+SG+TG+PKG++ HR
Sbjct: 2 DDLAAIIYTSGSTGEPKGVMLSHR 25
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 45.0 bits (106), Expect = 2e-05
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 109 DAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVY 168
+ +P++V+T DR + + V + ++++SE ++ + +G D +AY Y
Sbjct: 100 NTEPALVVTSDALRDRFQPSRVAEA-------AELMSEAARVAPGGYEPMGGDALAYATY 152
Query: 169 SSGTTGKPKGIVCPH 183
+SGTTG PK + H
Sbjct: 153 TSGTTGPPKAAIHRH 167
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 44.5 bits (105), Expect = 3e-05
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 25/187 (13%)
Query: 19 FRNQAKRTPDKIAVV----DHDG-RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
F PDK A+ H R ++++LD D + L G G V +
Sbjct: 28 FDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPN 87
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY-------MDRLE 126
E+T Y+A + G PL + L +L+ A + + + M R
Sbjct: 88 RWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMAREL 147
Query: 127 RTSVPKVKL-------ENDFLSKMISENEKLHNVDF------PQVGLDDIAYIVYSSGTT 173
++ +P ++ +D +++ E+ D P+ DD+ ++Y+SGTT
Sbjct: 148 QSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTT 207
Query: 174 GKPKGIV 180
G+PKG++
Sbjct: 208 GEPKGVM 214
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 44.6 bits (106), Expect = 3e-05
Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
L + R A+R PD+IA+V RS T++++D D + L +G G + V C
Sbjct: 9 LAHFLRQAARRFPDRIALV-WGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNC 67
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPK 132
+ S A + G ++P P + + + + +I ++ + R + P
Sbjct: 68 NQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPD 127
Query: 133 VKL---------ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
+ D+ +++ + V V DD + ++SGTTG+PK V H
Sbjct: 128 LTHVVAIGGARAGLDY-EALVARHLG-ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTH 185
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 44.4 bits (105), Expect = 3e-05
Identities = 46/205 (22%), Positives = 67/205 (32%), Gaps = 45/205 (21%)
Query: 19 FRNQAKRTPDKIAVV-DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
F R PD+ A+V H T++QL + D + L+ G G VG+ C EW
Sbjct: 24 FDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEW 83
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
++ A + G + + +Y + LE L + VI D +TS L+
Sbjct: 84 LLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVIC----ADAF-KTSDYHAMLQE 138
Query: 138 DFLSKMISENEKLHNVDFP---------------------------------------QV 158
+ L P +
Sbjct: 139 LLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASL 198
Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPH 183
DD I Y+SGTTG PKG H
Sbjct: 199 DRDDPINIQYTSGTTGFPKGATLSH 223
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 43.8 bits (104), Expect = 4e-05
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
S++++QL + D++ L G + + ++ ++W I+ +A +AG +P+
Sbjct: 1 DSLSYQQLWQEVDLLAEQLRALGV---KRIALALDNSIDWVIADLACLQAGIVCIPIPHF 57
Query: 98 YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ 157
+ + +L+DA ++I+ D + S I+ + V+ P
Sbjct: 58 FSAQQTQHLLNDAGADLLIS-----DDPDAASALHTPFATLGEDLYIALRPSANPVELPA 112
Query: 158 VGLDDIAYIVYSSGTTGKPKGIVC 181
A I Y+SG+TG+PKG VC
Sbjct: 113 ----GTAKITYTSGSTGQPKG-VC 131
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 43.4 bits (103), Expect = 5e-05
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 44/148 (29%)
Query: 37 GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
R +++ + + W + L G G V +LME E+ ++++A+ K G + T
Sbjct: 1 DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60
Query: 97 SYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFP 156
+ +L ++ + VI
Sbjct: 61 TQRGEVLAHCINVSDARAVIV--------------------------------------- 81
Query: 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
D A+ +Y+SGTTG PK + HR
Sbjct: 82 -----DPAFYIYTSGTTGLPKAAIMSHR 104
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 43.5 bits (102), Expect = 6e-05
Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 30/200 (15%)
Query: 18 MFRNQAKRTPD-----KIAVVDHDGRSITFKQLDEWTDIV---GTYLINQGCIVGSTVGV 69
+FR ++ P+ + +VD ++ E DIV G L + G + G+
Sbjct: 50 VFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGI 109
Query: 70 LMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS 129
EW IS A + G +PL + +E ++ ++ SIV + + + L +T
Sbjct: 110 YGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTC 169
Query: 130 VPKVKLENDFLS------KMISENEKLHNV----------------DFPQVGLDDIAYIV 167
+ +S + E E V D P DI I+
Sbjct: 170 PNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIM 229
Query: 168 YSSGTTGKPKGIVCPHRGAV 187
Y+SGTTG PKG++ + V
Sbjct: 230 YTSGTTGDPKGVMISNESIV 249
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 43.1 bits (102), Expect = 7e-05
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI-AIHKAGGGYLPLETSY 98
+T+KQ E + G +VG+L EW I+ + AI AGG + + T+
Sbjct: 9 LTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIF-AGGIAVGIYTTN 67
Query: 99 PPALLESVLDDAKPSI-VITKGEYMDRLE--RTSVPKVK----LENDFLSKMI-----SE 146
P + V + ++ +I V+ + + ++ + +P +K K E
Sbjct: 68 SPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLYSWKE 127
Query: 147 NEKLHNVDFPQVGLDDI---------AYIVYSSGTTGKPKGIVCPH 183
+L P LD I ++Y+SGTTG PKG++ H
Sbjct: 128 FMEL-GRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSH 172
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 43.2 bits (102), Expect = 8e-05
Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 19/204 (9%)
Query: 20 RNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79
+ A R PD+IAV+D R +++ +LD+ D + L G G TV V + E+ I
Sbjct: 35 TDHAARYPDRIAVID-GERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYI 93
Query: 80 SYIAIHKAGG-------GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL---ERTS 129
++ A+ + G + E + +E+ L R + +
Sbjct: 94 TFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPT 153
Query: 130 VPKVKLENDFLSKMISENEKLHNVD----FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
+ V + + + E H P ++A+ S GTTG PK I P
Sbjct: 154 LRHVIVAGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLI--PRTH 211
Query: 186 AVHAYKWRHRAY--PYDEDDREAC 207
+ Y R A +D+ C
Sbjct: 212 NDYYYSVRASAEICGFDQQTVYLC 235
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 42.4 bits (100), Expect = 1e-04
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 28/139 (20%)
Query: 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPAL------LESVLDDAKPSIVIT 117
G V +L + L++ I++ AG +PL + PA L +VLDD PS ++T
Sbjct: 79 GDRVAILAPQNLDYLIAFFGALYAGRIAVPL---FDPAEPGHVGRLHAVLDDCTPSAILT 135
Query: 118 KGEYMDRL----------ERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV 167
+ + + ER V V D + P+ D IAY+
Sbjct: 136 TTDSAEGVRKFFRARPAKERPRVIAVDAVPDEVGATWVP---------PEANEDTIAYLQ 186
Query: 168 YSSGTTGKPKGIVCPHRGA 186
Y+SG+T P G+ H
Sbjct: 187 YTSGSTRIPAGVQITHLNL 205
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 42.3 bits (100), Expect = 1e-04
Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 40/175 (22%)
Query: 35 HDGR-----SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89
+D R ++ ++ L + L+ G G V ++ E ++ ++ A AG
Sbjct: 40 YDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGL 99
Query: 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER---TSVPKVKLENDFLSKMISE 146
+PL P + Y+ +L ++ P + D L ++E
Sbjct: 100 VPVPL---------------PLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNE 144
Query: 147 ------------NEKLH-----NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
+ +V P+ DDIAY+ YSSG+T P+G++ HR
Sbjct: 145 ATHGNPLLHVLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHR 199
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 41.9 bits (98), Expect = 2e-04
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 25/198 (12%)
Query: 2 DSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQG 60
D + L D+ + A Y DK+A V+ G+++T+ ++ T L + G
Sbjct: 26 DKLTLPDFVLQDAELYA---------DKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLG 76
Query: 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVL----DDAKPSIVI 116
G V V++ E+ I + I AGG + + P LES + + A +++
Sbjct: 77 LRKGQVVVVVLPNVAEYGIVALGIMAAGGVF----SGANPTALESEIKKQAEAAGAKLIV 132
Query: 117 TKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVD-------FPQVGLDDIAYIVYS 169
T +++ +P + L + + ++ E L D ++ D+ + +S
Sbjct: 133 TNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFS 192
Query: 170 SGTTGKPKGIVCPHRGAV 187
SGTTG KG++ HR V
Sbjct: 193 SGTTGISKGVMLTHRNLV 210
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 42.0 bits (99), Expect = 2e-04
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 23 AKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
PDK AV R T+++L D V L G G V + E+
Sbjct: 34 VASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEF 93
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY-------MDRLERTSV 130
T+ Y+A + G PL + L +L A+ +++ + M R R +
Sbjct: 94 TVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPEL 153
Query: 131 PKVKL--------ENDFLSKMISENEKLHNVDFPQV------GLDDIAYIVYSSGTTGKP 176
P ++ + F ++ D P + G DD+ ++Y+SGTTG+P
Sbjct: 154 PALRHVVVVGGDGADSF-EALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEP 212
Query: 177 KGI 179
KG+
Sbjct: 213 KGV 215
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 41.8 bits (99), Expect = 2e-04
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+ P IA+ +D +T++QL D + QG + GS V + + E ++Y+
Sbjct: 13 AQVRPQAIALRLNDEV-LTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYL 71
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
A+ + G LPL P L + +L++ PS+ + ++ S S
Sbjct: 72 ALLQCGARVLPLN----PQLPQPLLEELLPSLTLDFALVLEGENTFSA--------LTSL 119
Query: 143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
+ E H V + +A + +SG+TG PK V
Sbjct: 120 HLQLVEGAHAVAW---QPQRLATMTLTSGSTGLPKAAV 154
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 41.4 bits (98), Expect = 3e-04
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 11/159 (6%)
Query: 30 IAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89
++ G +T+ +L+ ++ + L G G V +L+E E+ Y A ++G
Sbjct: 2 AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGL 61
Query: 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS------VPKVKLENDFLSKM 143
Y P+ A + ++DD+ ++I D + VP + + +
Sbjct: 62 YYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGF 121
Query: 144 ISENEKLHNVDFPQVGLDDI---AYIVYSSGTTGKPKGI 179
S E L P + D A ++YSSGTTG+PKGI
Sbjct: 122 RSYEEAL--AAQPDTPIADETAGADMLYSSGTTGRPKGI 158
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 41.1 bits (97), Expect = 3e-04
Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 22/170 (12%)
Query: 34 DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
D G S+T+++L + + + G +G+++ + ++ +A+ AG +P
Sbjct: 2 DSTGGSLTYRKLLTASLALSRLIKKLT-KEGENIGIMLPSSVAGALANLALLLAG--KVP 58
Query: 94 LETSYPPAL--LESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLS-----KMISE 146
+ ++ L S A VIT ++++L+ + + + IS+
Sbjct: 59 VMLNFTAGEEGLRSACKQAGIKTVITSRAFLEKLKLEGLVVLLEGVRIVYLEDLRAKISK 118
Query: 147 NEK------------LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
+K L + DD A I+++SG+ G PKG+V HR
Sbjct: 119 ADKLKAFLAAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHR 168
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 41.4 bits (98), Expect = 3e-04
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 161 DDIAYIVYSSGTTGKPKGIVCPHRG-AVHAY---KWRHRAYPYDEDDREAC 207
+D +I+Y+SG+TGKPKG+V G V+A K+ + DD C
Sbjct: 225 EDPLFILYTSGSTGKPKGVVHTTGGYLVYAATTFKY---VFDIHPDDVYWC 272
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 40.9 bits (96), Expect = 4e-04
Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 31/207 (14%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAV---VDHDG-----RSITFKQLDEWTDIVGTYLINQ 59
D+ G LH F + D + + DG + +T+ + +G+ L+
Sbjct: 39 DHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQH 98
Query: 60 GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119
G G+ VG+ EW I A +PL + P ++ +++ A+ + +
Sbjct: 99 GIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVP 158
Query: 120 EYMDRLER--TSVPKVKL--------------------ENDFLSKMISENEKLHNVDFPQ 157
+ ++ L + +P V+L E SK++++ + F
Sbjct: 159 QTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQG-RSSPQPFRP 217
Query: 158 VGLDDIAYIVYSSGTTGKPKGIVCPHR 184
+D+A I Y+SGTTG PKG+V H
Sbjct: 218 PKPEDVATICYTSGTTGTPKGVVLTHG 244
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 40.4 bits (95), Expect = 6e-04
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 25 RTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84
D IAV+ + R ++++L++ +D + L QG G T V + E+ I++ A+
Sbjct: 35 AASDAIAVICGE-RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFAL 93
Query: 85 HKAGGGYLPLETSYPPALLE--SVLDDAKPSIVI--------TKGEYMDRL--ERTSVPK 132
K G P+ + E + +P+++I + ++++ L E +S+
Sbjct: 94 LKLG--VAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRV 151
Query: 133 VKLENDF----LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
V L ND L I+ + + D++A+ S G+TG PK I
Sbjct: 152 VLLLNDDGEHSLDDAINHPAE--DFTATPSPADEVAFFQLSGGSTGTPKLI 200
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 40.2 bits (95), Expect = 6e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
VG D IA +++SG+TG PK ++ HR
Sbjct: 203 HAAVGPDTIAKFLFTSGSTGLPKAVINTHR 232
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 40.0 bits (94), Expect = 7e-04
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHA 189
P+ D A IVY+SGTTG PKG+V R A+ A
Sbjct: 123 PEPDPDAPALIVYTSGTTGPPKGVVLS-RRAIAA 155
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 40.2 bits (94), Expect = 8e-04
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 21/150 (14%)
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG---EYMDRLERT 128
+ LEW +A+ AGG PL + +S + +P +++T + + L+
Sbjct: 68 DLYLEW---LLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQND 124
Query: 129 SVPKVKLE-----------NDFLSKMISENEKLHNVDFPQVGL----DDIAYIVYSSGTT 173
+P + + S + +E K + ++ DD I ++SGTT
Sbjct: 125 RLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTT 184
Query: 174 GKPKGIVCPHRGAVHAYKWRHRAYPYDEDD 203
G+PKG+ H + + Y EDD
Sbjct: 185 GRPKGVTISHSALIVQSLAKIAIVGYGEDD 214
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 39.9 bits (93), Expect = 9e-04
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 14/179 (7%)
Query: 4 VNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63
NLS A H A+RTPD+ A+V + + I++ + + L +G
Sbjct: 2 FNLSASIA---FH------ARRTPDRAALV-YRDQEISYAEFHQRILQAAGMLHARGIGQ 51
Query: 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
G V +LM+ + A G +LP+ + +L DA +++ E+ D
Sbjct: 52 GDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF-D 110
Query: 124 RLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ--VGLDDIAYIVYSSGTTGKPKGIV 180
+ PK+ ++ + + PQ V D+ ++Y+SGTT +PKG++
Sbjct: 111 AIVALETPKIVIDAAAQAD-SRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVM 168
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 39.8 bits (93), Expect = 0.001
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
D+P++ A I YS+GTTG PKG+V HR
Sbjct: 174 DWPELDETTAAAICYSTGTTGAPKGVVYSHR 204
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 39.1 bits (92), Expect = 0.001
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
DD A I+++SGTTG+PKG+ H+ + + + +++ DR
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDR 45
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 39.1 bits (91), Expect = 0.001
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 32/177 (18%)
Query: 23 AKRTPDKIAVVDHDGR-SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
A R P+ A+V R +I+++ L D + L G + G V + M E+ ++
Sbjct: 26 ATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL 85
Query: 82 IAIHKAGGGYLPLETSYPPA--------------LLES--VLDDAKPS-----IVITKGE 120
+A +A +PL+ + P A L+++ D A+P+ + + G
Sbjct: 86 LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGG 145
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPK 177
D V L+ + E P+ D A I+++ GTTG PK
Sbjct: 146 --DSGPSGGTLSVHLD--------AATEPTPATSTPEGLRPDDAMIMFTGGTTGLPK 192
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 38.8 bits (91), Expect = 0.002
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 161 DDIAYIVYSSGTTGKPKGIVCPHR 184
DD+A I+Y+SGTTG PKG++ H
Sbjct: 264 DDLALIMYTSGTTGDPKGVMHTHG 287
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 38.8 bits (90), Expect = 0.002
Identities = 44/200 (22%), Positives = 79/200 (39%), Gaps = 31/200 (15%)
Query: 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
A G L + A + A+ D R IT+ +L+ + L+ G ++V +
Sbjct: 19 ARGTLPDLLSKAAADYGPRPALEFRD-RPITYTELEAMAETAAAALLRAGYGKDASVALY 77
Query: 71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT------------- 117
+ + I++ KAG + L L L D+ ++IT
Sbjct: 78 LGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKF 137
Query: 118 --KGEYMDRL--------ERTSVPKVKLENDFLSKMISENEKLHN----VDFPQVGLDDI 163
KG +DRL + P+ + D ++++ + + ++P V DD+
Sbjct: 138 LEKG-LLDRLIVCEDDNWGKVGTPQAPIPAD--PRIVTYADFVKGAAAPAEWPAVTPDDV 194
Query: 164 AYIVYSSGTTGKPKGIVCPH 183
A + Y+ GTTG PKG + H
Sbjct: 195 ALLQYTGGTTGLPKGAMLTH 214
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 38.5 bits (90), Expect = 0.002
Identities = 31/165 (18%), Positives = 69/165 (41%), Gaps = 20/165 (12%)
Query: 36 DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE 95
R ++ +L+E + + G G V + ++ C E+ + + K G +P+
Sbjct: 34 VVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPIN 93
Query: 96 TSYPPALLESVLDDAKPSIVITKGEYM---DRLERTSVPKVKLENDFLSKMISENEKLHN 152
+L +++ S+++T ++ ++++ L + L+++ +
Sbjct: 94 ARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQED--ATPLRHICLTRVALPADD-GV 150
Query: 153 VDF--------------PQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
F P + DD A I+++SGTT +PKG+V H
Sbjct: 151 SSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITH 195
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 38.5 bits (90), Expect = 0.002
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 67 VGVLMERCLEWTISYIAIHKAGGGYLP--LETSYPPALLESVLDDAKPSIVITKGEYMDR 124
VGVL++ E+ S + A G +P L + A L + A +V+T+ + +
Sbjct: 57 VGVLLDNTPEF--SLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAEL 114
Query: 125 LE--RTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
L+ V + +++ + ++ + F DD+ ++++SGT+G PK + C
Sbjct: 115 LDGLDPGVRVINVDSPAWADELAAHRD-AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCT 173
Query: 183 HR 184
HR
Sbjct: 174 HR 175
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 38.5 bits (90), Expect = 0.002
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 152 NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV-HAY 190
+ D+P+ + + + Y+SGTTG PKG + HR V HAY
Sbjct: 167 DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAY 206
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 38.5 bits (90), Expect = 0.002
Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 33/194 (17%)
Query: 19 FRNQAKRTPDKIAVVDHDG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
A PD+ + + R +T+ + D + L++ G G V +L
Sbjct: 55 LAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGN 114
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPP-----ALLESVLDDAKPSIVITK-GEYMDR--- 124
+E + +A +AG P+ +Y A L+ + D KP +V + G R
Sbjct: 115 SIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALA 174
Query: 125 -LERTSVPKVKLEN-----------DFLSKMISENEKLHNVD--FPQVGLDDIAYIVYSS 170
L+ V V + D + + V + D +A +++S
Sbjct: 175 ALDLLDVTVVHVTGPGEGIASIAFADLAATPPTAA-----VAAAIAAITPDTVAKYLFTS 229
Query: 171 GTTGKPKGIVCPHR 184
G+TG PK ++ R
Sbjct: 230 GSTGMPKAVINTQR 243
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 38.6 bits (90), Expect = 0.003
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKLH-----NVDFPQVGLDDIAYIVYSSGTTGK 175
YMD S + +++ SE EKL + D P +DIA I+Y+SG+TG
Sbjct: 207 YMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSP--NDIAVIMYTSGSTGL 264
Query: 176 PKGIVCPHRGAV 187
PKG++ H V
Sbjct: 265 PKGVMMTHGNIV 276
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 37.7 bits (88), Expect = 0.004
Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 45/171 (26%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
S+TF++LDE +D + L G G V +++ + T A+ K G + ++
Sbjct: 1 DSLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60
Query: 98 YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ 157
L L++A+P I +PK
Sbjct: 61 MGRKHLGRCLEEAEPDAFI------------GIPKA------------------------ 84
Query: 158 VGLDDIAYIVYSSGTTGKPKGIVCPHR---GAVHAYKWRHRAYPYDEDDRE 205
DD A I+++SG+TG PKG+V HR + A + Y E DR+
Sbjct: 85 ---DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALR---SLYGIREGDRD 129
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 37.2 bits (87), Expect = 0.006
Identities = 12/18 (66%), Positives = 17/18 (94%)
Query: 162 DIAYIVYSSGTTGKPKGI 179
+ +YI+Y+SGTTGKPKG+
Sbjct: 234 EPSYILYTSGTTGKPKGV 251
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 37.0 bits (85), Expect = 0.007
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 17/118 (14%)
Query: 81 YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER------------T 128
Y A+ G P + +L+ A+ +++ + +E
Sbjct: 66 YFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVV 125
Query: 129 SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
K + + E V + Y++GTTG PKG+V HR
Sbjct: 126 MDEKAPEGYLAYEEALGEEADPVRVP----ERAACG-MAYTTGTTGLPKGVVYSHRAL 178
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 37.0 bits (86), Expect = 0.007
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 28/155 (18%)
Query: 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
T++ L+ W I+G +G+ + R I++I H A + + ++ P
Sbjct: 74 TWRHLEAWYGIMG---------IGAICHTVNPRLFPEQIAWIINH-AEDRVVITDLTFVP 123
Query: 101 ALLESVLD---DAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ 157
+LE + D + +V+T +M +T++ +++++ + DF
Sbjct: 124 -ILEKIADKLPSVERYVVLTDAAHM---PQTTLKNAVAYEEWIAE--------ADGDFAW 171
Query: 158 VGLDD--IAYIVYSSGTTGKPKGIVCPHRGAV-HA 189
D+ A + Y+SGTTG PKG++ HR V HA
Sbjct: 172 KTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHA 206
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 37.0 bits (87), Expect = 0.007
Identities = 10/16 (62%), Positives = 16/16 (100%)
Query: 165 YIVYSSGTTGKPKGIV 180
+I+Y+SG+TGKPKG++
Sbjct: 249 FILYTSGSTGKPKGVL 264
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 37.1 bits (86), Expect = 0.008
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 22/165 (13%)
Query: 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
T+K++ E +G+ L G GS VG+ C +W ++ A +PL + P
Sbjct: 78 TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGP 137
Query: 101 ALLESVLDDAKPSIVITKGEYMDRL---ERTSVPKVKLENDFLSKMISENEKLHNV---- 153
++ ++D A+ V + + + L + S ++K F S E++K +
Sbjct: 138 GAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKT 197
Query: 154 ----DFPQVGLD-----------DIAYIVYSSGTTGKPKGIVCPH 183
DF +G + DI I+Y+SGT+G PKG+V H
Sbjct: 198 YSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTH 242
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 36.8 bits (86), Expect = 0.008
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGA---VHAYKWRHRAYPYDEDDREAC 207
+ +D +I+Y+SG+TGKPKG++ H ++A + + D C
Sbjct: 232 PMDSEDPLFILYTSGSTGKPKGVL--HTTGGYLLYAAMTMKYVFDIKDGDIFWC 283
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 36.2 bits (84), Expect = 0.011
Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 38/146 (26%)
Query: 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
++ QL + ++ V +L G G V +++ E + +A K G +P T
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60
Query: 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVG 159
PA L KP ++ D
Sbjct: 61 PADLRDRFSRGKPKAIVADETRAD------------------------------------ 84
Query: 160 LDDIAYIVYSSGTTGKPKGIVCPHRG 185
D + ++SGTTG PK ++ H
Sbjct: 85 --DPILLYFTSGTTGLPKLVLHTHVS 108
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 36.0 bits (83), Expect = 0.014
Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 31/171 (18%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
R++T++QL ++ + L G G V + M E + +A + G + +
Sbjct: 82 RTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGG 141
Query: 98 YPPALLESVLDDAKPSIVIT-----KG----EYMDRLE------RTSVPKVKLENDFLSK 142
+ L +DDA P ++++ +G Y L+ + P V L + L+
Sbjct: 142 FASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAP 201
Query: 143 MISENEKLHNVDFPQVGLDDI--------------AYIVYSSGTTGKPKGI 179
M +VD+ + +YI+Y+SGTTGKPKG+
Sbjct: 202 M--RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGV 250
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 36.1 bits (84), Expect = 0.017
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 155 FPQVGL-----DDIAYIVYSSGTTGKPKGIVCPHR 184
FP V DD A I+++SG+ G PKG+V HR
Sbjct: 782 FPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHR 816
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 35.6 bits (82), Expect = 0.019
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 168 YSSGTTGKPKGIVCPHRGA 186
Y+SGTT PKG+V HRGA
Sbjct: 202 YTSGTTASPKGVVLHHRGA 220
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 35.6 bits (82), Expect = 0.022
Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 33/175 (18%)
Query: 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98
S+T+ +L + + YL + G G V + + +E I+ +A + G + + +
Sbjct: 120 SLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGF 179
Query: 99 PPALLESVLDDAKPSIVIT-----KG-----------EYMDRLERTSVP-KVKLENDFLS 141
L + D KP +VIT +G +D + V + L +
Sbjct: 180 SAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQL 239
Query: 142 KMISENEKLHN----------VDFPQ------VGLDDIAYIVYSSGTTGKPKGIV 180
M E+ K ++P V +D +++Y+SG+TGKPKG++
Sbjct: 240 AMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL 294
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 35.3 bits (82), Expect = 0.023
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 161 DDIAYIVYSSGTTGKPKGIVCPH 183
DD+ Y++Y+ GTTG PKG++
Sbjct: 4 DDL-YMLYTGGTTGMPKGVMWRQ 25
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 35.5 bits (82), Expect = 0.024
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 13/66 (19%)
Query: 123 DRLERTSVPKVKLEN--------DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTG 174
++LE+ K K + D ++K + N K+ N D D I IVY+SGT+G
Sbjct: 263 EKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNED-----PDFITSIVYTSGTSG 317
Query: 175 KPKGIV 180
KPKG++
Sbjct: 318 KPKGVM 323
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 35.5 bits (82), Expect = 0.024
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 97 SYPPALLESV-LDDAKPSIVIT--KGEYMDRLERTSVPKVKLENDFLS-----KMISENE 148
++ P L E++ L KPS VIT + + + + + + LS K I EN
Sbjct: 182 TFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENN 241
Query: 149 KLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
+ ++ V YI+Y+SGTTG K +V
Sbjct: 242 QSPFYEYVPVESSHPLYILYTSGTTGNSKAVV 273
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 34.8 bits (80), Expect = 0.038
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 140 LSKMISENEKLHNV-DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
L+ ++ + H + D DD+A I ++SGTTG PKG + HR
Sbjct: 125 LTTIVDKARITHALCDKRLTAADDVALIGFTSGTTGLPKGTMHFHR 170
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 34.7 bits (80), Expect = 0.042
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 129 SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
+P+ ND L+K + + + DD+A + Y+ GTTG KG + HR V
Sbjct: 180 HLPQAVKFNDALAK--GAGQPVTEAN---PQADDVAVLQYTGGTTGVAKGAMLTHRNLV 233
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 34.2 bits (78), Expect = 0.051
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 168 YSSGTTGKPKGIVCPHRGA 186
Y+SGTT PKG+V HRGA
Sbjct: 193 YTSGTTADPKGVVISHRGA 211
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 34.0 bits (78), Expect = 0.064
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 149 KLHNVDFPQVGLDDIAYIVYSSGTTGKPKG 178
K+ F V DD A ++Y+SGTTG PKG
Sbjct: 75 KISGAKFVIVDPDDPAALIYTSGTTGLPKG 104
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 33.9 bits (78), Expect = 0.073
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 161 DDIAYIVYSSGTTGKPKG 178
DD+A +V +SGTTG PKG
Sbjct: 35 DDVALVVATSGTTGTPKG 52
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 33.7 bits (77), Expect = 0.085
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 155 FPQVGLDDIAYIVYSSGTTGKPKGIV 180
F Q+ D +I++SSGTTG PK IV
Sbjct: 258 FEQLPFDHPLWILFSSGTTGLPKCIV 283
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 33.3 bits (76), Expect = 0.11
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 157 QVGLDDIAYIVYSSGTTGKPKGIVCPH 183
VGLDDIA + Y+ GTTG KG + H
Sbjct: 203 PVGLDDIAVLQYTGGTTGLAKGAMLTH 229
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 33.1 bits (76), Expect = 0.12
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
+V D ++++SGTTG PK + C H
Sbjct: 145 REVDAMDPFMLIFTSGTTGAPKAVRCSH 172
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 33.2 bits (76), Expect = 0.14
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
QA+ P ++ DGR T++ ++ + V LI G G VGVLME
Sbjct: 456 QARDAPKGEFLL-FDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLME 505
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 32.3 bits (73), Expect = 0.21
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 5/162 (3%)
Query: 22 QAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTIS 80
A+ PD+ AV V G ++++QLD+ + + L + G G V +L + E +
Sbjct: 6 HAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVV 65
Query: 81 YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDF- 139
A ++G + + ++ D+ +++ +D L + L F
Sbjct: 66 LWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAA-LDGLAAKVGADLPLRLSFG 124
Query: 140 --LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
+ S L A ++YSSGTTG PKGI
Sbjct: 125 GEIDGFGSFEAALAGAGPRLTEQPCGAVMLYSSGTTGFPKGI 166
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 31.6 bits (72), Expect = 0.36
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 161 DDIAYIVYSSGTTGKPKGIVCPHR 184
+D A I+++SG+ G PKG+V H+
Sbjct: 365 EDAALILFTSGSEGHPKGVVHSHK 388
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 31.6 bits (72), Expect = 0.46
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 161 DDIAYIVYSSGTTGKPKGI----VCPHRGAVHAYKWRH 194
+ I++SSGTTG+PK I + P R A A W H
Sbjct: 356 EAFTNILFSSGTTGEPKAIPWTQLTPLRAAADA--WAH 391
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 30.7 bits (70), Expect = 0.76
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 153 VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
+D + G DD+A + +SG+TG PK + H
Sbjct: 144 IDPVETGEDDLALMQLTSGSTGSPKAVQITHG 175
>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional.
Length = 499
Score = 30.2 bits (68), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 166 IVYSSGTTGKPKGI----VCPHRGAVHAYKWRH 194
I++SSGTTG+PK I + P R A W H
Sbjct: 124 ILFSSGTTGEPKAIPWTHLSPLRCASDG--WAH 154
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 30.1 bits (68), Expect = 1.4
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 166 IVYSSGTTGKPKGI 179
++Y+SGTTG PKG+
Sbjct: 157 MIYTSGTTGHPKGV 170
>gnl|CDD|184632 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 418
Score = 29.9 bits (67), Expect = 1.4
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 117 TKGEYMDRLER--TSVPKVKLENDFLSKMISENEKLHNVDF---PQVGLDDIAYIVYS 169
T +Y + +ER T++P + L+ D + SE E+ N + +G D I YS
Sbjct: 257 TNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYS 314
>gnl|CDD|219065 pfam06506, PrpR_N, Propionate catabolism activator. This domain is
found at the N terminus of several sigma54- dependent
transcriptional activators including PrpR, which
activates catabolism of propionate.
Length = 169
Score = 28.7 bits (65), Expect = 1.8
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 28/87 (32%)
Query: 3 SVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVG------TY- 55
+ +S +D AL +A+R +I +V ++ L ++++G Y
Sbjct: 56 EIKVSGFDLLRAL-----ARARRYGGRIGLVGYEN---IIPGLKALSELLGLDIVQRAYQ 107
Query: 56 -----------LINQG--CIVGSTVGV 69
L QG IVG +
Sbjct: 108 SEEEARAAVKELKAQGIKVIVGDGLVC 134
>gnl|CDD|205059 pfam12760, Zn_Tnp_IS1595, Transposase zinc-ribbon domain. This
zinc binding domain is found in a range of transposase
proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It is
likely a zinc-binding beta ribbon domain that could bind
the DNA.
Length = 46
Score = 26.5 bits (59), Expect = 2.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 176 PKGIVCPHRGAVHAYKWRHR 195
P G VCPH G+ AY+ R
Sbjct: 16 PNGFVCPHCGSEEAYRITRR 35
>gnl|CDD|223607 COG0533, QRI7, Metal-dependent proteases with possible chaperone
activity [Posttranslational modification, protein
turnover, chaperones].
Length = 342
Score = 29.1 bits (66), Expect = 2.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 78 TISYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPSI 114
S I +H GG +P S P L+E L +A S+
Sbjct: 28 VASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSL 69
>gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain. The rieske domain has a
[2Fe-2S] centre. Two conserved cysteines that one Fe ion
while the other Fe ion is coordinated by two conserved
histidines.
Length = 99
Score = 27.1 bits (60), Expect = 3.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 152 NVDFPQVGLDDIAYIVYSSGTTGKPKGI--VCPHRGAV 187
DF V LD +V G+ + + VC HRGA
Sbjct: 14 PGDFKTVDLDGEDPVVVRRDKDGEVRALSNVCTHRGAP 51
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 28.1 bits (63), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 158 VGLDDIAYIVYSSGTTGKPK 177
V ++I I SSGTTGKP
Sbjct: 87 VPKEEIVRIHASSGTTGKPT 106
>gnl|CDD|224139 COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS)
3'-phosphatase [Inorganic ion transport and metabolism].
Length = 276
Score = 28.0 bits (63), Expect = 4.8
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 198 PYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRL--PLNG 250
P D A + E LR L IP+ +E I RL L PL+G
Sbjct: 42 PVTAADLAAQQ--IILEGLRALFPDIPVVSEEEEAIDWEERLHWDRFWLVDPLDG 94
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 28.4 bits (64), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 137 NDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
DF +++ + +G DD+A ++ GTTG PK + H
Sbjct: 190 LDFDAELARQPGDRL-FSGRPIGPDDVAAYFHTGGTTGMPK--LAQHT 234
>gnl|CDD|220213 pfam09377, SBDS_C, SBDS protein C-terminal domain. This family is
highly conserved in species ranging from archaea to
vertebrates and plants. The family contains several
Shwachman-Bodian-Diamond syndrome (SBDS) proteins from
both mouse and humans. Shwachman-Diamond syndrome is an
autosomal recessive disorder with clinical features that
include pancreatic exocrine insufficiency,
haematological dysfunction and skeletal abnormalities.
Members of this family play a role in RNA metabolism.
Length = 126
Score = 27.2 bits (61), Expect = 5.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 98 YPPALLESVLDDAKPSIVITK 118
YPP ++E L + S+ K
Sbjct: 23 YPPTMIEKALKELGFSVDPNK 43
>gnl|CDD|237481 PRK13723, PRK13723, conjugal transfer pilus assembly protein TraH;
Provisional.
Length = 451
Score = 27.4 bits (61), Expect = 7.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 119 GEYMDRLERTSVPKVKLENDFLSKMISE 146
G + D +T+VP++K DFL KM S+
Sbjct: 112 GYFFDLALQTTVPEIKTAKDFLQKMASD 139
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 27.3 bits (61), Expect = 9.3
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 168 YSSGTTGKPKGI 179
YSSGTTG+PK I
Sbjct: 108 YSSGTTGEPKLI 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.430
Gapped
Lambda K H
0.267 0.0854 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,343,231
Number of extensions: 1281473
Number of successful extensions: 1396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1282
Number of HSP's successfully gapped: 232
Length of query: 251
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 156
Effective length of database: 6,723,972
Effective search space: 1048939632
Effective search space used: 1048939632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)