RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4550
(251 letters)
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 180 bits (459), Expect = 1e-53
Identities = 57/241 (23%), Positives = 114/241 (47%), Gaps = 18/241 (7%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+Y + +H +F Q + P+ +A+V + +T+ +L+ + + I +G + V
Sbjct: 34 EYPRDKTIHQLFEEQVSKRPNNVAIV-CENEQLTYHELNVKANQLARIFIEKGIGKDTLV 92
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
G++ME+ ++ I +A+ KAGG Y+P++ YP ++ +LDD++ +++T+ + +
Sbjct: 93 GIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN 152
Query: 128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
+ + + + N+ D+AY++Y+SGTTG PKG + H+G
Sbjct: 153 IQFNGQVEIFEEDT---IKIREGTNLH-VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGIS 208
Query: 188 HAYKWRHRAYPYDEDDREACNV---------FFVWEMLRPLTQGIPMYVISDEVIYDPPR 238
+ + + E DR + VWEM L G +Y+I + I D +
Sbjct: 209 NLKVFFENSLNVTEKDR----IGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK 264
Query: 239 L 239
Sbjct: 265 F 265
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 173 bits (441), Expect = 3e-51
Identities = 43/237 (18%), Positives = 87/237 (36%), Gaps = 25/237 (10%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVG---STVGVLM 71
L + + A+ P A G+S+T+++L E +D + + G S + V
Sbjct: 3 LLHAIQTHAETYPQTDAFR-SQGQSLTYQELWEQSDRAAAAIQKRI--SGEKKSPILVYG 59
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP 131
+S++ KAG Y+P++ S P + +++ + ++I +
Sbjct: 60 HMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQ 119
Query: 132 KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK 191
V E ++ S ++ V + YI+Y+SG+TG PKG+
Sbjct: 120 TVSAEELLENEGGSVSQD------QWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTD 173
Query: 192 WRHRAYPYDEDDREACNV---------FFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
W +P V ++ L G ++ ++ + + P L
Sbjct: 174 WICADFPVSGGKI----FLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVL 226
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 177 bits (450), Expect = 9e-51
Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 11/233 (4%)
Query: 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
L Y F+ PD A+ + G+++++++LDE + + L G GS V +
Sbjct: 463 TKPLTYWFKEAVNANPDAPALT-YSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYT 521
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP 131
+R LE I + + KAG YLP++ P + +L D+ + ++T E ++
Sbjct: 522 KRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYT 581
Query: 132 KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK 191
L D + E+ + + +D AYI+Y+SGTTGKPKG + H
Sbjct: 582 GTTLFIDDQT---RFEEQASDPA-TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQG-LV 636
Query: 192 WRHRAYPYDEDDREACNV-----FFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
+ + D F ++ + + + + + D RL
Sbjct: 637 KHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERL 689
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 170 bits (433), Expect = 4e-50
Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 22/236 (9%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVG--STVGVLME 72
L A TPD+ A V IT+KQL E +D + ++ ++ S + V
Sbjct: 3 LLEQIEKWAAETPDQTAFV-WRDAKITYKQLKEDSDALAHWISSEY--PDDRSPIMVYGH 59
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPK 132
E I+++ KAG Y+P++ S P ++ + +++ ++++ + V
Sbjct: 60 MQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAV--TVTDLPVRI 117
Query: 133 VKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
V +N + N + V D+ YI+Y+SG+TG PKG+ + V KW
Sbjct: 118 VSEDNLKDIFFTHKGNT-PNPE-HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKW 175
Query: 193 RHRAYPYDEDDREACNV---------FFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
+ V ++ L G ++ I ++I P L
Sbjct: 176 AVEDFNLQTGQV----FLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDL 227
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 165 bits (420), Expect = 3e-48
Identities = 46/236 (19%), Positives = 93/236 (39%), Gaps = 22/236 (9%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ A+ D G T+ QL +D + ++ + + S V V +
Sbjct: 6 MIDSIEQFAQTQADFPVYD-CLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQT 64
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
+ +++A+ K+G Y+P++ P + ++++ AKPS++I E+ +E S+ +
Sbjct: 65 YDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSL- 123
Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW-- 192
+ V DD YI+++SGTTG+PKG+ H + W
Sbjct: 124 ---SEIESAKLAEMPYERT--HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMI 178
Query: 193 RHRAYPYDEDDREACNV---------FFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
A+ + + + V L G ++ + E++ D +L
Sbjct: 179 EDAAFDVPKQPQ----MLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQL 230
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 164 bits (418), Expect = 1e-47
Identities = 43/255 (16%), Positives = 82/255 (32%), Gaps = 32/255 (12%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHD---------GRSITFKQLDEWTDIVGTYLIN 58
Y + + AK P+ AV T+K+L+E + V +I+
Sbjct: 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH 74
Query: 59 QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118
+ G + V ++R L + I K+G Y+P+E P +L D++ ++
Sbjct: 75 AS-LHGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVC 133
Query: 119 GEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKG 178
D +E KV + + ++ + AY++Y+SG+TG PKG
Sbjct: 134 DNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDIL-NNYPENLDAYLLYTSGSTGTPKG 192
Query: 179 IVCPHRGAVHAYKWRHR--------AYPYDEDDREACNV---------FFVWEMLRPLTQ 221
+ + + + + EM
Sbjct: 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGK----FLCLASRAFDVHIGEMFLAWRF 248
Query: 222 GIPMYVISDEVIYDP 236
G+ + D
Sbjct: 249 GLCAVTGERLSMLDD 263
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 164 bits (418), Expect = 2e-47
Identities = 52/237 (21%), Positives = 81/237 (34%), Gaps = 18/237 (7%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
D A + F A P + A+ S+ ++QL + + + YL+ G +
Sbjct: 22 DLYAHPTVVARFSEMAALHPHREAIR-DRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCL 80
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
GV E E +AI +G YL ++ P A + +++
Sbjct: 81 GVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG 140
Query: 128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
+ L + + P D IAYI +SSGTTG+PK I C H G
Sbjct: 141 LPC----VPVRHLPAAPASVAR------PCFAADQIAYINFSSGTTGRPKAIACTHAGIT 190
Query: 188 HAYKWRHRAYPYDEDDR--EACNVFF---VWEMLRPLTQGIPMYVISDEVIYDPPRL 239
+ R + F E+ L G V++D DP L
Sbjct: 191 R-LCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCC-VLNDLGPLDPGVL 245
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 118 bits (298), Expect = 6e-31
Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 8/197 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
L ++R A PD+ A + DG +T + + + + L+ G G V +L + C
Sbjct: 8 LADVYRRNAALFPDRTAFMV-DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNC 66
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER-----TS 129
E A+ G LP+ + VL D PS+V+ +Y D +
Sbjct: 67 SEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG 126
Query: 130 VPKVKLENDFLSKMISENEKLHNVDF--PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
V K D + + F P+ G D I++++ G+P+G + +
Sbjct: 127 VKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLL 186
Query: 188 HAYKWRHRAYPYDEDDR 204
A A+ E D
Sbjct: 187 IAQSSLVDAWRLTEADV 203
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 118 bits (298), Expect = 7e-31
Identities = 44/199 (22%), Positives = 74/199 (37%), Gaps = 12/199 (6%)
Query: 15 LHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
+ +M R +A +P A V+ +T+ Q++ + L G G V +LM
Sbjct: 18 IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 77
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVP 131
+E+ + K G +P+ T + +L D+ +VI ++ R
Sbjct: 78 SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD 137
Query: 132 KVKL------ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
+ ++ S V+ G DD +I+Y+SGTTG PKG+V H
Sbjct: 138 PPGTVTDWIGADSLAERLRSAAADEPAVE---CGGDDNLFIMYTSGTTGHPKGVVHTHES 194
Query: 186 AVHAYKWRHRAYPYDEDDR 204
A DR
Sbjct: 195 VHSAASSWASTIDVRYRDR 213
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 117 bits (296), Expect = 1e-30
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 11/191 (5%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
P K+A+ G I++ +L V L+ +G VG V E+ +E + Y
Sbjct: 11 DKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLY 70
Query: 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTSVPKVKLEN 137
+A +AGG YLPL T+Y L+ + DA+P IV+ D + + L
Sbjct: 71 LATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGP 130
Query: 138 D----FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR 193
D +E +D G DD+A I+Y+SGTTG+ KG + H
Sbjct: 131 DGRGSLTDAAAGASEAFATID---RGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTL 187
Query: 194 HRAYPYDEDDR 204
+ + DD
Sbjct: 188 VDYWRFTPDDV 198
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 114 bits (289), Expect = 1e-29
Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 22/234 (9%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
LH K +++ G T+ ++ V + L G G + + +
Sbjct: 24 LHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS 83
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTS 129
E+ ++++ G PA L ++ ++IT+ Y +++ +
Sbjct: 84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143
Query: 130 VPKVKLEND-----FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
V + +++ S++ +E + + DD+ + YSSGTTG PKG++ H+
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHK 201
Query: 185 G----AVHAYKWRHRAYPYDEDDREACNV-FF-----VWEMLRPLTQGIPMYVI 228
G + + +D C + F ML L G P+ ++
Sbjct: 202 GLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM 255
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 115 bits (290), Expect = 2e-29
Identities = 49/239 (20%), Positives = 91/239 (38%), Gaps = 27/239 (11%)
Query: 16 HYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
Y+F+N K +++ G T+ + + + G V +L+ C
Sbjct: 65 DYIFQN-ISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNC 123
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTSV 130
E+ +S++A G + PA + + ++IT+ Y+D++ V
Sbjct: 124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGV 183
Query: 131 PKVKLEND-----------FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
V ++++ F S E +D ++ DD+ + YSSGTTG PKG+
Sbjct: 184 VIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGV 243
Query: 180 VCPHRGAV----HAYKWRHRAYPYDEDDREACNV-FF-----VWEMLRPLTQGIPMYVI 228
+ H+G V + + DD C + F ML L G + ++
Sbjct: 244 MLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM 302
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 113 bits (285), Expect = 5e-29
Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 15/204 (7%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ K A +D D S T+ +L+E + L G + ++M
Sbjct: 25 FAAYLFRLNETRAGKTAYID-DTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDT 83
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
+ ++++ AG + T PA +L + VI G + + +
Sbjct: 84 VALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEH 143
Query: 135 LENDFLSKMISENEKLHNVDF-------------PQVGLDDIAYIVYSSGTTGKPKGIVC 181
+ E+E F G DDIA+ +YSSG+TGKPKG V
Sbjct: 144 DGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVH 203
Query: 182 PHRGAV-HAYKWRHRAYPYDEDDR 204
H A + E+D
Sbjct: 204 THANLYWTAELYAKPILGIAENDV 227
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 111 bits (281), Expect = 1e-28
Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 16/190 (8%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ D+ A+ RS+T+ +L + V V
Sbjct: 25 FPALSPAPTGAPADRPALRF-GERSLTYAELAAAAGATAGRIGG-----AGRVAVWATPA 78
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
+E ++ +A AG +PL L +L D+ PS+V+ + ++ +V
Sbjct: 79 METGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVD 138
Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH 194
++ V D A +VY+SGTTG PKG V P R
Sbjct: 139 VDVRARG----------AVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALA 188
Query: 195 RAYPYDEDDR 204
A+ + +D
Sbjct: 189 DAWQWTGEDV 198
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 108 bits (272), Expect = 3e-27
Identities = 42/187 (22%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHD-------GRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
L A++ +K A++ + S+ F ++ E T + + + +G G V
Sbjct: 21 LADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHV 80
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL-- 125
GV + +++ ++ A+ + +P+ Y LE +L+D++ + ++ +
Sbjct: 81 GVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140
Query: 126 --ERTSVPKVKL---ENDFLSKMISENEKLHNVDFPQV---GLDDIAYIVYSSGTTGKPK 177
E+T V +V + E + LS+++ + DF V +D+A I Y+ GTTG PK
Sbjct: 141 VLEKTGVERVFVVGGEVNSLSEVMDSGSE----DFENVKVNPEEDVALIPYTGGTTGMPK 196
Query: 178 GIVCPHR 184
G++ H
Sbjct: 197 GVMLTHF 203
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 107 bits (270), Expect = 4e-27
Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 11/222 (4%)
Query: 18 MFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
M R A R PD A+ G +T +L + V L G V V+ +
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY--MDRLERTSVPKVK 134
I+ +A+H+ G L A L ++ + + + D + ++
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARI 126
Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW-- 192
+ L + ++ PQ A+I Y+SGTTG PK + P R A +
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 193 RHRAYPYDEDDREACNV-FF-----VWEMLRPLTQGIPMYVI 228
+ + + + ++ L V+
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 106 bits (266), Expect = 2e-26
Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 22/208 (10%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
L + QA++ IA+ D S T++ L ++ L S VG+ ++
Sbjct: 3 LDFWLYKQAQQNGHHIAITD-GQESYTYQNLYCEASLLAKRLKAYQ---QSRVGLYIDNS 58
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER------- 127
++ I A A + T P + + + ++ R +
Sbjct: 59 IQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDI 118
Query: 128 -----------TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKP 176
+ ++ D ++ + E N+ LDDIA I+++SGTTG
Sbjct: 119 EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQ 178
Query: 177 KGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
K + R + + +D D
Sbjct: 179 KAVPQTFRNHYASAIGCKESLGFDRDTN 206
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 105 bits (264), Expect = 3e-26
Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 11/197 (5%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ R++A + D+IA+ ++++LD D + G V V + E+
Sbjct: 30 LLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
A+ + G + S+ + + + A+ + I Y R+ +V+ +
Sbjct: 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKL 148
Query: 138 DFLSKMISENEKLHNVDF----------PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
L +I E + P+V D+A++ S G+TG K I H +
Sbjct: 149 PTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYI 208
Query: 188 HAYKWRHRAYPYDEDDR 204
++ K D
Sbjct: 209 YSLKRSVEVCWLDHSTV 225
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 104 bits (261), Expect = 9e-26
Identities = 41/243 (16%), Positives = 82/243 (33%), Gaps = 31/243 (12%)
Query: 16 HYMFRN--QAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
+ + + P IA D H +IT+ + E + + + G + V E
Sbjct: 24 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERT 128
L++ + + G P Y L + ++ ++P++V + + ++ ++
Sbjct: 84 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 129 SVPK--------------VKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTG 174
+ + + S + + V IA I+ SSG+TG
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTG 203
Query: 175 KPKGIVCPHRG----AVHAYKWRHRAYPYDEDDREAC-----NVFFVWEMLRPLTQGIPM 225
PKG+ PHR HA D + F ++ L L G +
Sbjct: 204 LPKGVALPHRTACVRFSHARDPIFGNQ-IIPDTAILSVVPFHHGFGMFTTLGYLICGFRV 262
Query: 226 YVI 228
++
Sbjct: 263 VLM 265
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 101 bits (254), Expect = 8e-25
Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 25/213 (11%)
Query: 15 LHYMFRNQAKRTPD--KIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
R +R IA + G ++ + E + +G L N G +V + +
Sbjct: 25 AGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCS 84
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL------ 125
E C E+ I IA G G P Y L L +KP+IV + + +D++
Sbjct: 85 ENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKT 144
Query: 126 -----------ERTSVPKVKLENDFLSKMISENEKLHNVDFPQV-GLDDIAYIVYSSGTT 173
+ + + F+ + + + +V + +A I+ SSG+T
Sbjct: 145 VTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGST 204
Query: 174 GKPKGIVCPHRG----AVHAYKWRHRAYPYDED 202
G PKG+ H HA +
Sbjct: 205 GLPKGVQLTHENIVTRFSHARDPIYGNQVSPGT 237
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 101 bits (253), Expect = 1e-24
Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 15/201 (7%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ + P +A++ R +++ +LD + + T L +G G T V + E+
Sbjct: 35 ILTVGVQSHPHSLAIIC-GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEF 93
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY-------MDRLERTSV 130
I + A+ KAG L S+ L + + +P ++I ++
Sbjct: 94 YIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVN 153
Query: 131 PKVKL-------ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
++ DF E VDF D++A+ S G+TG PK I H
Sbjct: 154 LSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTH 213
Query: 184 RGAVHAYKWRHRAYPYDEDDR 204
++ + + + R
Sbjct: 214 NDYDYSVRASAEICGLNSNTR 234
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 96.5 bits (241), Expect = 4e-23
Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 13/190 (6%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
D IAV+D R +++++L++ D + L QG G T V + E I++ A+ K
Sbjct: 39 SDSIAVID-GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLK 97
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
G + S+ + L + +P+++I ++ + E+ + +
Sbjct: 98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLL 157
Query: 147 NEK------------LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH 194
N+ + D++AY S GTTG PK I H ++ +
Sbjct: 158 NDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV 217
Query: 195 RAYPYDEDDR 204
+ + R
Sbjct: 218 EICQFTQQTR 227
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 95.1 bits (237), Expect = 2e-22
Identities = 43/254 (16%), Positives = 87/254 (34%), Gaps = 39/254 (15%)
Query: 18 MFRNQAKRTPDKIAVVDHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75
A + + ++ L + L++ G V ++ E
Sbjct: 26 ALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSS 85
Query: 76 EWTISYIAIHKAGGGYLPLETSYPPAL----------LESVLDDAKPSIVITKGEYMDRL 125
E+ ++ A AG +PL P L+ +L +P+ +IT E++ +
Sbjct: 86 EFVEAFFACQYAGLVAVPL---AIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLV 142
Query: 126 ERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
+ +L LS + +V + +DIAY+ Y+SG+T P+G++ HR
Sbjct: 143 NAATHDNPELHV--LSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHRE 200
Query: 186 AVHAYK-WRHRAYPYDEDDREACNVFFVW-----------EMLRPLTQGIPMYVIS-DEV 232
+ + H D W +L P+ + + + +
Sbjct: 201 VMANLRAISHDGIKLRPGD-----RCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDF 255
Query: 233 IYDPPRLTSGWVRL 246
P + W++L
Sbjct: 256 AMRPLQ----WLKL 265
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 94.6 bits (236), Expect = 2e-22
Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 22/194 (11%)
Query: 20 RNQAKRTPDKIAV--VDHDG--RSITFKQLDEWTDIVGTYLINQGCIV-GSTVGVLMERC 74
+A + P A+ V+ G F++L E + L + G V V++ R
Sbjct: 50 MEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPK 132
EW + + +AG ++P + L +K ++ E + ++ + P
Sbjct: 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS 169
Query: 133 VKL-----------ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVC 181
+++ +F + + H V+ G + + I ++SGT+G PK
Sbjct: 170 LRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVE---TGSQEASAIYFTSGTSGLPKMAEH 226
Query: 182 PHRG-AVHAYKWRH 194
+ + A
Sbjct: 227 SYSSLGLKAKMDAG 240
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 94.3 bits (235), Expect = 3e-22
Identities = 44/247 (17%), Positives = 102/247 (41%), Gaps = 25/247 (10%)
Query: 18 MFRNQAKRTPDKIAVV---DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ R +A +P+K + ++T++QLD+ + L +G G V +L
Sbjct: 16 VVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG 75
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPAL------LESVLDDAKPSIVITKGEYMDRLERT 128
L +++ AG +P+ YPPA + ++ ++KP IV+ +++ +
Sbjct: 76 LPLIQAFLGCLYAGCIAVPI---YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD 132
Query: 129 SVPKVKLENDFLSKMISENEKLHNVDF--PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
+ + + E + + + +DIA++ Y+SG+T PKG++ H
Sbjct: 133 ELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNL 192
Query: 187 VHAYKWRHRAYPYDEDDREA------CNVFFVWEMLRPLTQGIPMYVIS-DEVIYDPPRL 239
+ ++ +++ ++ + +L P+ GI ++S + +P
Sbjct: 193 LDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLS- 251
Query: 240 TSGWVRL 246
W++
Sbjct: 252 ---WLKH 255
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 92.1 bits (229), Expect = 1e-21
Identities = 59/263 (22%), Positives = 94/263 (35%), Gaps = 48/263 (18%)
Query: 18 MFRNQAKRTPDKIAVV------DHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGV 69
R A+ P A D DG ++T+ QL T V L G G V +
Sbjct: 29 ALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVI 87
Query: 70 LMERCLEWTISYIAIHKAGGGYLPLETSYPPAL------LESVLDDAKPSIVITKGEYMD 123
+ LE+ ++++ +AG +PL P +SVL D+ P ++T +D
Sbjct: 88 SAPQGLEYVVAFLGALQAGRIAVPL---SVPQGGVTDERSDSVLSDSSPVAILTTSSAVD 144
Query: 124 RLER-------TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKP 176
+ + S P + +E D L F + AY+ Y+SG+T P
Sbjct: 145 DVVQHVARRPGESPPSI-IEVDLLDLDAPNG-----YTFKEDEYPSTAYLQYTSGSTRTP 198
Query: 177 KGIVCPHRGAVHAYKWRHRAYPYDEDDREACN-VFFVW-----------EMLRPLTQGIP 224
G+V H+ ++ Y D D N W + P+ G P
Sbjct: 199 AGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 258
Query: 225 MYVIS-DEVIYDPPRLTSGWVRL 246
+ S + P R W+ L
Sbjct: 259 AVLTSPVSFLQRPAR----WMHL 277
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 86.5 bits (215), Expect = 1e-19
Identities = 31/189 (16%), Positives = 72/189 (38%), Gaps = 21/189 (11%)
Query: 23 AKRTPDKIAV--VDHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
A+ +P+K+A+ D G + TFK L ++D + + G G V + ++ ++
Sbjct: 66 ARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125
Query: 79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT--KGEYMDRLE--RTSVPKVK 134
+ +HK G +P + ++ A +++ + + ++++ +
Sbjct: 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIP 185
Query: 135 LEN------------DFLSKMISENEKLHNVDFP-QVGLDDIAYIVYSSGTTGKPKGIVC 181
L+ DF ++ + +DI + +SSGT G PK +
Sbjct: 186 LKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEH 245
Query: 182 PHRGAVHAY 190
+ +
Sbjct: 246 DNTYPLGHI 254
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 57.5 bits (140), Expect = 8e-10
Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 17/178 (9%)
Query: 27 PDKIAVV---DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM---ERCLEWTIS 80
K V + T+ ++ + + L G VG V L R LE +
Sbjct: 32 GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLE---A 88
Query: 81 YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER-----TSVPKVKL 135
Y A+ G P + +L+ A+ +++ + +E +V +
Sbjct: 89 YFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVV 148
Query: 136 ENDFLSKMISENEKLHNVDFPQVGLD--DIAYIVYSSGTTGKPKGIVCPHRGAV-HAY 190
++ + E+ + V + + Y++GTTG PKG+V HR V H+
Sbjct: 149 MDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 2e-06
Identities = 39/236 (16%), Positives = 61/236 (25%), Gaps = 102/236 (43%)
Query: 80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI-----TKGEYMDRLE---RTSVP 131
+YI P + AL +V + + I +Y + L +T
Sbjct: 125 NYITARIMAKR--PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 132 KVK---------LENDFLSKMISENEKLHN-------------------------VDFPQ 157
V L L + + EK+ + P
Sbjct: 183 LVGDLIKFSAETLSE--LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 158 VGLDDIA-YIV--------------YSSGTTGKPKGIVCP------------HRGAVHAY 190
+G+ +A Y+V Y G TG +G+V A
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 191 KW------R-HRAYPYD-------EDDREACNVFFVWEMLRPLTQGIP--MYVISD 230
R + AYP ED E +G+P M IS+
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLEN-------------NEGVPSPMLSISN 343
Score = 31.6 bits (71), Expect = 0.32
Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 61/185 (32%)
Query: 33 VDHDGRSITFK----QLD--EWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTI----SY 81
++ S TF+ L ++T Q + + L + +
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFT---------QPALT--LMEKAAFEDLKSKGLIPADAT 1758
Query: 82 IAIH--------KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV 133
A H + + +E+ + +V +G M + +VP+
Sbjct: 1759 FAGHSLGEYAALASLADVMSIES----LV----------EVVFYRGMTM----QVAVPRD 1800
Query: 134 KLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYS-SGTTGKPKGIV---CPHR----- 184
+L MI+ N F Q + + Y+V TG IV ++
Sbjct: 1801 ELGRSNYG-MIAINPGRVAASFSQ---EALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 185 GAVHA 189
G + A
Sbjct: 1857 GDLRA 1861
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 40.1 bits (93), Expect = 4e-04
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
+ D + S GTTG PK +V WR Y +
Sbjct: 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRP 134
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 36.8 bits (86), Expect = 0.006
Identities = 10/16 (62%), Positives = 16/16 (100%)
Query: 165 YIVYSSGTTGKPKGIV 180
+I+Y+SG+TGKPKG++
Sbjct: 260 FILYTSGSTGKPKGVL 275
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 36.0 bits (84), Expect = 0.008
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 165 YIVYSSGTTGKPKGIV 180
+++Y+SG+TG PKG+
Sbjct: 266 FLLYTSGSTGAPKGVQ 281
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.12
Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 59/193 (30%)
Query: 20 RNQAKRT-PDKIAVV-----DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL--- 70
+ T P +++++ D +K ++ L I+ S++ VL
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK------LTT---IIESSLNVLEPA 369
Query: 71 -MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS 129
+ + +++ P P LL + D S V+ +++L + S
Sbjct: 370 EYRKMFD----RLSV-------FPPSAHIPTILLSLIWFDVIKSDVM---VVVNKLHKYS 415
Query: 130 VPKVKLENDFLSKMISENEKLHNVDFP-QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH 188
+ +E IS + ++ +V L++ + HR V
Sbjct: 416 L----VEKQPKESTIS----IPSIYLELKVKLENEYAL----------------HRSIVD 451
Query: 189 AYKWRHRAYPYDE 201
Y + + D+
Sbjct: 452 HYN-IPKTFDSDD 463
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.17
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 18/37 (48%)
Query: 83 AIHKAGGGYLPLETS---YPPALLESVLDDAKPSIVI 116
A+ K L+ S Y D+ P++ I
Sbjct: 21 ALKK-------LQASLKLYAD--------DSAPALAI 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 31.1 bits (71), Expect = 0.33
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 158 VGLDDIAYIVYSSGTTGKPKGI 179
V D I+ I SSGTTGKP +
Sbjct: 87 VPQDRISRIHASSGTTGKPTVV 108
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral
biology, fragment, G-protein COUP receptor,
glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Length = 80
Score = 28.8 bits (64), Expect = 0.46
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 36 DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
+G +ITF +L + T I G G+ L+ + W S
Sbjct: 2 NGSTITFDELQGLVNSTVTQAILFGVRSGAAALTLI---VVWITSR 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 30.4 bits (69), Expect = 0.65
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 158 VGLDDIAYIVYSSGTTGKPKGI 179
V + + + SSGTTGKP +
Sbjct: 89 VPREQVVRVHASSGTTGKPTVV 110
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 29.2 bits (66), Expect = 1.3
Identities = 10/26 (38%), Positives = 10/26 (38%)
Query: 154 DFPQVGLDDIAYIVYSSGTTGKPKGI 179
D I SSGTTG P I
Sbjct: 79 LVAGDMKRDGVRIHSSSGTTGNPTVI 104
>3ats_A Putative uncharacterized protein; hypothetical protein, putative
aminoglycoside phosphortransf transferase; 1.67A
{Mycobacterium tuberculosis} PDB: 3att_A*
Length = 357
Score = 27.7 bits (62), Expect = 3.4
Identities = 4/30 (13%), Positives = 8/30 (26%), Gaps = 8/30 (26%)
Query: 149 KLHNVDFPQVGLDDIAYIVYSSGTTGKPKG 178
LH++ Q + G+
Sbjct: 154 TLHSIPNAQNTFSFLTQ--------GRTSD 175
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 26.9 bits (60), Expect = 7.2
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 9/49 (18%)
Query: 80 SYIAIHKAGGGYLPLETS-----YPPALLESVLDDAKPS----IVITKG 119
I G P E + P L++ + + I ++G
Sbjct: 33 KTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFSQG 81
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein
structure initiative; HET: SO4 GOL; 1.49A {Clostridium
acetobutylicum atcc 824}
Length = 196
Score = 26.3 bits (58), Expect = 7.5
Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 3 SVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDI 51
S+ ++ +D A++ AKR +++A++ + + +++ +
Sbjct: 75 SIKVTRFDTMRAVY-----NAKRFGNELALIAYKHSIVDKHEIEAMLGV 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.430
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,122,245
Number of extensions: 252121
Number of successful extensions: 736
Number of sequences better than 10.0: 1
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 50
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)