RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4550
(251 letters)
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 135 bits (340), Expect = 2e-37
Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 10/237 (4%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+Y + +H +F Q + P+ +A+V + +T+ +L+ + + I +G + V
Sbjct: 18 EYPRDKTIHQLFEEQVSKRPNNVAIVC-ENEQLTYHELNVKANQLARIFIEKGIGKDTLV 76
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
G++ME+ ++ I +A+ KAGG Y+P++ YP ++ +LDD++ +++T+ + +
Sbjct: 77 GIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN 136
Query: 128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
+ + I E LH D+AY++Y+SGTTG PKG + H+G
Sbjct: 137 IQFNGQVEIFEEDTIKIREGTNLH----VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGIS 192
Query: 188 HAYKWRHRAYPYDEDDREACN-----VFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
+ + + E DR VWEM L G +Y+I + I D +
Sbjct: 193 NLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKF 249
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 132 bits (332), Expect = 9e-36
Identities = 48/263 (18%), Positives = 92/263 (34%), Gaps = 39/263 (14%)
Query: 22 QAKRTPDKIAVV-----DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
+ D+ A++ + I++++L L++ G G V + M E
Sbjct: 81 HLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE 140
Query: 77 WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-------------D 123
++ +A + G + + + P + + D+ +VIT E + D
Sbjct: 141 AAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDD 200
Query: 124 RLERTSVPKVK--------------LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYS 169
L+ +V V+ E L + + +D +I+Y+
Sbjct: 201 ALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 260
Query: 170 SGTTGKPKGIVCPHRGA-VHAYKWRHRAYPYDEDDREAC--NVFFV----WEMLRPLTQG 222
SG+TGKPKG++ G V+A + Y D C +V +V + + PL G
Sbjct: 261 SGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG 320
Query: 223 IPMYVISDEVIYDPPRLTSGWVR 245
+ + P V
Sbjct: 321 ATTLMFEGVPNWPTPARMCQVVD 343
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 122 bits (305), Expect = 1e-32
Identities = 40/227 (17%), Positives = 72/227 (31%), Gaps = 3/227 (1%)
Query: 15 LHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
++ M R A R PD A+ G +T +L + V L G V V+
Sbjct: 4 VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT--KGEYMDRLERTSVP 131
+ I+ +A+H+ G L A L ++ + + + + D + ++
Sbjct: 64 SADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSG 123
Query: 132 KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK 191
+ L + ++ PQ A+I Y+SGTTG PK + P R A
Sbjct: 124 ARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL 183
Query: 192 WRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPR 238
+ + + + D
Sbjct: 184 FMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE 230
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 122 bits (305), Expect = 2e-32
Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 11/242 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ R++A + D+IA+ ++++LD D + G V V +
Sbjct: 27 FGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
E+ A+ + G + S+ + + + A+ + I Y R+ +V+
Sbjct: 86 KEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQ 145
Query: 135 LENDFLSKMISENEKLH----------NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
+ L +I E V P+V D+A++ S G+TG K I H
Sbjct: 146 SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHD 205
Query: 185 GAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV 244
+++ K D + + + V+ P
Sbjct: 206 DYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAF 265
Query: 245 RL 246
L
Sbjct: 266 PL 267
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 115 bits (289), Expect = 3e-30
Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 10/239 (4%)
Query: 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDG---RSITFKQLDEWTDIVGTYLINQGCIVGS 65
D E L A K V T+ ++ + + L G VG
Sbjct: 7 MDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66
Query: 66 TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
V L +Y A+ G P + +L+ A+ +++ + +
Sbjct: 67 RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 126
Query: 126 E--RTSVPKVKL-----ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKG 178
E R + V+ E + E D +V + Y++GTTG PKG
Sbjct: 127 EAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKG 186
Query: 179 IVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPP 237
+V HR V +++ + ++ + + P
Sbjct: 187 VVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 245
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 112 bits (281), Expect = 5e-29
Identities = 50/258 (19%), Positives = 86/258 (33%), Gaps = 40/258 (15%)
Query: 22 QAKRTPDKIAVV-----DHDGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCL 75
A +TP+K A++ G SIT+K+L E V L + G G TV V M
Sbjct: 68 HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP 127
Query: 76 EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL 135
E I+ +AI + G + + + L ++D +VIT E + ++
Sbjct: 128 EAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVD 187
Query: 136 ENDFLSKMISENEKLHNVDFPQVGLD--------------------------DIAYIVYS 169
+ + + + P V D +++Y+
Sbjct: 188 DALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYT 247
Query: 170 SGTTGKPKGIVCPHRGAVHAYKWRHR-AYPYDEDDRE------ACNVFFVWEMLRPLTQG 222
SG+TG PKG+ G + R + ++D + + PL G
Sbjct: 248 SGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYG 307
Query: 223 IPMYVI-SDEVIYDPPRL 239
V + R
Sbjct: 308 CATLVFEGTPAYPNYSRY 325
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 110 bits (275), Expect = 3e-28
Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 22/224 (9%)
Query: 12 EGALHYMFRNQAKR---TPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+G KR P IA D H +IT+ + E + + + G +
Sbjct: 16 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 75
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE- 126
V E L++ + + G P Y L + ++ ++P++V + + ++
Sbjct: 76 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 135
Query: 127 -RTSVPKVK----------------LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYS 169
+ +P ++ + S + + V IA I+ S
Sbjct: 136 VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNS 195
Query: 170 SGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW 213
SG+TG PKG+ PHR A + ++ + + V
Sbjct: 196 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 239
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf
complex {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 127
Score = 26.9 bits (59), Expect = 1.3
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 129 SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI--VCPHRGA 186
++ K L ND ++ + + Q D Y+V S T GI VC H G
Sbjct: 1 TIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGC 60
Query: 187 VHAYKWRHRAY 197
V + +
Sbjct: 61 VVPFNAAENKF 71
>d1smpi_ b.61.2.1 (I:) Metalloprotease inhibitor {Erwinia
chrysanthemi [TaxId: 556]}
Length = 100
Score = 24.8 bits (54), Expect = 4.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 26 TPDKIAVVDHDGRSITF 42
TPD + + DG ++ F
Sbjct: 61 TPDGLTLTQADGSAVAF 77
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
protein PrpR {Escherichia coli [TaxId: 562]}
Length = 186
Score = 25.4 bits (56), Expect = 5.3
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 3 SVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDI 51
+ S YD L +A + I VV + + ++
Sbjct: 75 LIKPSGYDVLQFL-----AKAGKLTSSIGVVTYQETIPALVAFQKTFNL 118
>d1jiwi_ b.61.2.1 (I:) Metalloprotease inhibitor {Pseudomonas
aeruginosa, aprin [TaxId: 287]}
Length = 105
Score = 24.8 bits (54), Expect = 5.9
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 26 TPDKIAVVDHDGRSITF 42
TP IA+++ G ++
Sbjct: 64 TPAGIALLERGGLTLML 80
>d1a79a2 d.75.1.1 (A:9-82) Tetrameric tRNA splicing endonuclease,
N-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 74
Score = 23.5 bits (51), Expect = 8.5
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQL 45
AL+ + + V D + ++F++L
Sbjct: 42 ALYLINLG-------WLEVKYKDNKPLSFEEL 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.430
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,014,428
Number of extensions: 48337
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 17
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)