Query psy4551
Match_columns 321
No_of_seqs 167 out of 1187
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 19:57:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00567 TUDOR: Tudor domain; 99.9 1.5E-23 3.2E-28 170.1 13.0 121 41-191 1-121 (121)
2 KOG2039|consensus 99.7 2.6E-17 5.5E-22 175.8 14.9 183 44-268 647-831 (875)
3 smart00333 TUDOR Tudor domain. 99.4 6.8E-13 1.5E-17 95.7 6.5 56 95-177 2-57 (57)
4 cd04508 TUDOR Tudor domains ar 99.4 7.1E-13 1.5E-17 92.4 5.9 48 99-172 1-48 (48)
5 KOG2279|consensus 99.3 1.2E-12 2.5E-17 130.8 5.9 213 19-269 380-600 (608)
6 smart00743 Agenet Tudor-like d 98.6 1.5E-07 3.2E-12 68.9 6.4 55 96-176 3-59 (61)
7 PF06003 SMN: Survival motor n 98.2 1.9E-06 4.1E-11 81.3 5.0 59 93-176 66-124 (264)
8 KOG2279|consensus 97.6 2.2E-05 4.8E-10 79.4 1.2 204 53-267 292-500 (608)
9 smart00318 SNc Staphylococcal 96.9 0.015 3.1E-07 48.8 11.2 72 183-268 24-107 (138)
10 PF00565 SNase: Staphylococcal 96.8 0.0062 1.3E-07 48.4 7.5 70 186-268 1-78 (108)
11 PF09465 LBR_tudor: Lamin-B re 96.7 0.0065 1.4E-07 43.9 6.0 52 94-171 4-55 (55)
12 cd00175 SNc Staphylococcal nuc 95.9 0.046 1E-06 45.1 8.1 73 183-269 16-100 (129)
13 PF05641 Agenet: Agenet domain 95.6 0.028 6E-07 42.1 5.2 54 97-176 2-66 (68)
14 PF11717 Tudor-knot: RNA bindi 93.7 0.16 3.6E-06 36.4 5.0 52 96-171 1-54 (55)
15 PF15057 DUF4537: Domain of un 93.6 0.18 3.8E-06 42.4 5.8 52 99-177 1-52 (124)
16 KOG3026|consensus 93.5 0.17 3.6E-06 46.9 5.9 64 96-184 91-160 (262)
17 PRK06518 hypothetical protein; 92.2 0.7 1.5E-05 41.2 7.9 70 184-269 48-128 (177)
18 KOG4327|consensus 91.5 0.14 2.9E-06 46.3 2.5 55 92-171 64-118 (218)
19 KOG3038|consensus 88.8 4 8.7E-05 38.4 9.8 79 41-122 143-225 (264)
20 COG1525 Micrococcal nuclease ( 87.9 2.8 6.1E-05 37.2 8.1 75 182-269 62-146 (192)
21 cd04508 TUDOR Tudor domains ar 85.9 0.8 1.7E-05 31.1 2.7 18 125-142 3-20 (48)
22 PF15057 DUF4537: Domain of un 83.4 4.4 9.5E-05 34.0 6.6 106 41-177 10-116 (124)
23 PF11302 DUF3104: Protein of u 80.4 8.8 0.00019 29.6 6.6 60 95-173 5-70 (75)
24 PF07039 DUF1325: SGF29 tudor- 74.5 6.6 0.00014 33.2 5.0 89 41-162 15-114 (130)
25 smart00333 TUDOR Tudor domain. 67.4 6.1 0.00013 27.6 2.8 20 123-143 6-25 (57)
26 cd05834 HDGF_related The PWWP 66.3 11 0.00023 29.4 4.2 60 96-178 3-62 (83)
27 cd05162 PWWP The PWWP domain, 66.3 12 0.00027 28.7 4.6 66 97-179 2-67 (87)
28 smart00293 PWWP domain with co 63.5 19 0.0004 26.3 4.9 61 97-173 2-62 (63)
29 KOG2039|consensus 59.5 18 0.00038 40.1 5.8 90 110-228 467-567 (875)
30 PLN00104 MYST -like histone ac 56.6 21 0.00045 36.5 5.3 60 93-171 51-112 (450)
31 cd06080 MUM1_like Mutated mela 51.0 37 0.0008 26.4 4.8 55 97-177 2-57 (80)
32 PF00855 PWWP: PWWP domain; I 48.8 45 0.00098 25.1 5.1 60 97-176 2-61 (86)
33 cd05841 BS69_related The PWWP 48.8 30 0.00064 27.2 4.0 54 96-177 7-61 (83)
34 PF09038 53-BP1_Tudor: Tumour 43.4 50 0.0011 27.8 4.7 50 97-173 4-53 (122)
35 cd05840 SPBC215_ISWI_like The 38.2 59 0.0013 25.8 4.3 63 97-175 2-66 (93)
36 PF07039 DUF1325: SGF29 tudor- 31.8 1.2E+02 0.0026 25.6 5.4 54 97-175 1-60 (130)
37 cd05835 Dnmt3b_related The PWW 31.0 73 0.0016 24.8 3.7 63 97-179 2-64 (87)
38 PF02736 Myosin_N: Myosin N-te 28.4 1.8E+02 0.004 19.3 5.2 40 101-169 3-42 (42)
39 PF00018 SH3_1: SH3 domain; I 27.8 73 0.0016 21.4 2.9 26 94-119 14-39 (48)
40 PF09883 DUF2110: Uncharacteri 26.5 3.3E+02 0.0072 25.3 7.6 89 152-268 89-186 (225)
41 cd05838 WHSC1_related The PWWP 25.3 1.1E+02 0.0024 24.2 3.9 68 96-179 1-68 (95)
42 PF08169 RBB1NT: RBB1NT (NUC16 25.3 1.6E+02 0.0034 23.8 4.7 59 98-176 8-68 (96)
43 PF08605 Rad9_Rad53_bind: Fung 23.6 1.5E+02 0.0033 25.1 4.6 42 109-177 21-62 (131)
44 cd05837 MSH6_like The PWWP dom 23.6 1.3E+02 0.0027 24.5 4.0 67 96-176 3-70 (110)
45 cd05839 BR140_related The PWWP 22.9 1.5E+02 0.0033 24.4 4.4 73 96-175 1-80 (111)
46 PF12148 DUF3590: Protein of u 22.9 1.3E+02 0.0029 23.7 3.8 51 103-172 3-55 (85)
47 KOG2185|consensus 22.3 56 0.0012 33.1 1.9 26 95-121 180-205 (486)
48 TIGR02861 SASP_H small acid-so 22.2 1.2E+02 0.0026 22.2 3.2 25 147-171 32-57 (58)
49 PF03152 UFD1: Ubiquitin fusio 21.8 3.3E+02 0.0071 24.3 6.5 80 35-124 81-160 (176)
50 PF14902 DUF4494: Domain of un 20.6 93 0.002 26.9 2.7 47 72-120 36-82 (140)
No 1
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=99.91 E-value=1.5e-23 Score=170.07 Aligned_cols=121 Identities=26% Similarity=0.541 Sum_probs=96.7
Q ss_pred CCCCEEEEEEEEEccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEe
Q psy4551 41 SSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTV 120 (321)
Q Consensus 41 ~~g~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i 120 (321)
+.|+.+.|.||||.+|++||++.... ...+++|+++|++++..... ........|..|++.+..++.||||+|...
T Consensus 1 ~~~~~~~v~It~v~~~~~~~v~~~~~-~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~w~Ra~I~~~ 76 (121)
T PF00567_consen 1 PVGKTFEVYITHVDSPGEFYVQPDSA-DKAYEKLQEELQDYYENNPK---SPSPESNPGEGCLCVVSEDGRWYRAVITVD 76 (121)
T ss_dssp ----EEEEEEEEECTTSEEEEEECCC-HHHHHHHHHHHHHHHHHS-C---TTCST--TTEEEEEEETTTSEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEecCCEEEEEEcCC-HHHHHHHHHHHHHHHhcccc---cCccccccCCEEEEEEecCCceeeEEEEEe
Confidence 46889999999999999999977764 55899999999999987653 234567788888888888999999999332
Q ss_pred cCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecc
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLAN 191 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~Lag 191 (321)
. +...++|+|||||+++.|+.++||+||+.|..+|+||++|+|+|
T Consensus 77 ~--------------------------~~~~~~V~~iD~G~~~~v~~~~l~~l~~~~~~~P~~a~~~~L~g 121 (121)
T PF00567_consen 77 I--------------------------DENQYKVFLIDYGNTEKVSASDLRPLPPEFASLPPQAIKCKLAG 121 (121)
T ss_dssp E--------------------------CTTEEEEEETTTTEEEEEEGGGEEE--HHHCSSSSSCEEEEET-
T ss_pred c--------------------------ccceeEEEEEecCceEEEcHHHhhhhCHHHhhCChhhEEEEEcC
Confidence 1 22489999999999999999999999999999999999999997
No 2
>KOG2039|consensus
Probab=99.73 E-value=2.6e-17 Score=175.81 Aligned_cols=183 Identities=25% Similarity=0.420 Sum_probs=145.2
Q ss_pred CEEEEEEEEEccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEecCC
Q psy4551 44 GSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPG 123 (321)
Q Consensus 44 ~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~ 123 (321)
....+.++.+..++.||+|.++. ...+++++..|++....... ....+.++.|++|+|+|+.||+||||.|+++.
T Consensus 647 ~~~~~~~~~i~p~~~F~~q~~~~-~~~i~~~~~~~~~~~~~~~~--~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~-- 721 (875)
T KOG2039|consen 647 NTLKVVVTEITPGKGFYVQSISD-GSKITKIMTNLSQLVELKPP--SSGSYTPKRGDLCVAKYSLDGQWYRALIVEVL-- 721 (875)
T ss_pred ccceeeEeeecCCCcceeecccc-hHHHHHHHHHHHHHhhhccc--ccCCCCCCCCCeeeeeeccccceeeeeeeeec--
Confidence 44556666666559999999985 34789999999998884322 23567899999999999999999999999973
Q ss_pred ceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecceeeC-CCCChHH
Q psy4551 124 QIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPV-GDVWSEE 202 (321)
Q Consensus 124 ~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~LagV~P~-~~~Ws~e 202 (321)
+. ..+.|+||||||.+.+|..+|++||+.|..+|++|++|+|+||++. ......+
T Consensus 722 ----------------------~~--~~~~V~yiDygn~E~lp~~~l~~lp~~~~~~p~~a~~~~L~~ik~~~~~~~~e~ 777 (875)
T KOG2039|consen 722 ----------------------DP--ESMEVFYIDYGNIETLPFVRLKPLPPHFSLLPPVAQECGLAGIKEPQLEDLKEE 777 (875)
T ss_pred ----------------------cC--cceeEEEEecCcccccccccccCCChHHhcCchHHhhhhhhcccCCcccchHHH
Confidence 21 3799999999999999999999999999999999999999999976 4778899
Q ss_pred HHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCccccHHHHHHH-cCCcccc
Q psy4551 203 AISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELIS-RGFAVSS 268 (321)
Q Consensus 203 a~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~~sIn~~LI~-~GlA~~~ 268 (321)
++.+|.+.+.+ +...+.+.... ......|.|+... +..++++.|+. .|+....
T Consensus 778 ~i~~l~~~~~~---~~~~~~~~~~i--------~~~~~~~~l~~~~--~~~d~~~~l~~~~~l~~~~ 831 (875)
T KOG2039|consen 778 AIRYLDEDTLG---HKCQVNVELRV--------VGNSLLVTLLYTV--EELDVGEELVAVEGLSLVE 831 (875)
T ss_pred HHHHHHHHhhc---ccceeeeeeee--------eccceeEEEeeec--CcCChhHhhhhhccccccc
Confidence 99999999987 44444432221 1234567777654 36789999999 7776663
No 3
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=99.40 E-value=6.8e-13 Score=95.73 Aligned_cols=56 Identities=32% Similarity=0.607 Sum_probs=49.8
Q ss_pred cCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccC
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLN 174 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~ 174 (321)
.++.|+.|+|+| .|+.||||+|+++.++ ..+.|+|+|||+.+.|+.++||+||
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~~~--------------------------~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVDGE--------------------------QLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEECCC--------------------------CEEEEEEECCCccEEEeHHHeecCC
Confidence 478999999999 8999999999997431 4799999999999999999999999
Q ss_pred ccc
Q psy4551 175 PTF 177 (321)
Q Consensus 175 ~~f 177 (321)
+.+
T Consensus 55 ~~~ 57 (57)
T smart00333 55 EEL 57 (57)
T ss_pred CCC
Confidence 753
No 4
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=99.39 E-value=7.1e-13 Score=92.42 Aligned_cols=48 Identities=31% Similarity=0.659 Sum_probs=42.5
Q ss_pred CCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 99 GQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 99 G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
|++|+|+|+.|+.||||+|+++.+ ...+.|+|+|||+.+.|+.++|++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~--------------------------~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS--------------------------DGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC--------------------------CCcEEEEEEcCCCcEEEeHHHcCC
Confidence 789999998789999999999853 237999999999999999998874
No 5
>KOG2279|consensus
Probab=99.33 E-value=1.2e-12 Score=130.77 Aligned_cols=213 Identities=22% Similarity=0.193 Sum_probs=164.5
Q ss_pred CCCCCCCccccccccccccccCCCCCEEEEEEEEEccCCeEEEEEcC-CchhHHHHHHHHHHHHHh-hcCcccccccccC
Q psy4551 19 QAPLEPLSVQESELRAEKLISTSSDGSLTVFMSAVANPDRFWVQIMN-DRAIELDQLVESMTDYYN-QKANQETHRLTEV 96 (321)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~V~Vt~V~sp~~Fyvq~~~-~~~~~l~~L~~~L~~~~~-~~~~~~~~~~~~~ 96 (321)
-+|-.|+.-=+.-+.++.++.|+.+..+.|.|..+++.++||+|-.. +...++..+-..|...|. +...+. .+.++
T Consensus 380 ~~p~lps~al~~L~td~~wL~fpd~i~cev~V~s~i~a~hlf~pq~tip~F~aLrsldqwm~l~y~eq~t~pe--lP~P~ 457 (608)
T KOG2279|consen 380 WYPALPSGALENLNTDLYWLDFPDNIDCEVKVLSAIRADHLFLPQQTIPCFLALRSLDQWMELAYDEQLTHPE--LPKPL 457 (608)
T ss_pred cCcccCcccccccCCcceEEEcCCCceEEeeeehhhcccceeeccccchhhhhhhhHHHHHHHHhhcccCCcC--CCcch
Confidence 34555555533335788999999999999999999999999998765 333467888888888888 333222 23457
Q ss_pred CCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcc
Q psy4551 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPT 176 (321)
Q Consensus 97 ~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~ 176 (321)
..+-+|||.- .++.|.||.+..- .|+....+.+.||||| ...+...+||++..+
T Consensus 458 ~~t~~sAAp~-g~~awpra~lvd~------------------------~det~l~I~~~~VdyG-Y~~~~~ddlrqiRsd 511 (608)
T KOG2279|consen 458 VATISSAAPT-GISAWPRAYLVDT------------------------SDETKLDIGLELVDYG-YAIELPDDLRQIRSD 511 (608)
T ss_pred hhceeeeccc-CCCCccceEEEec------------------------cCcccchhhheeeccc-ccccchhhhhhhhcc
Confidence 7888999985 5679999999983 2333334999999999 999999999999999
Q ss_pred cccCCceEEEEEecceeeCC--CCChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCC----
Q psy4551 177 FLGLRFQAIECSLANVRPVG--DVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGE---- 250 (321)
Q Consensus 177 f~~lP~qAi~C~LagV~P~~--~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~---- 250 (321)
+..+|+|+.+.-|.-|.|.+ ..|++++.+.|+.|+-.. ..+...+-.+. ...++.+.||...++
T Consensus 512 ~~slPfq~tEv~l~~v~pl~~t~~~Spea~h~~s~Msi~~--~a~~~~v~~~~--------dt~Lp~~ql~s~~~D~k~~ 581 (608)
T KOG2279|consen 512 PDSLPFQATEVDLSLVTPLTETKKSSPEATHTLSCMSISE--AASMSGVDNLE--------DTYLPGSQLFSLLSDLKCC 581 (608)
T ss_pred cccCCcccchhhHhheeccCCCcCcCcccccchhhhhhhh--hhhhhcccccc--------cccchhhhhhhhhcccccc
Confidence 99999999999999999983 689999999999998641 23333443333 346788999876554
Q ss_pred ccccHHHHHHHcCCccccC
Q psy4551 251 QDVNISQELISRGFAVSSK 269 (321)
Q Consensus 251 ~~~sIn~~LI~~GlA~~~~ 269 (321)
..+-+++-|+.+|+|....
T Consensus 582 n~vk~~q~l~ecGla~~ad 600 (608)
T KOG2279|consen 582 NSVKHAQPLNECGLASVAD 600 (608)
T ss_pred chhhhhhhhhhcccccccc
Confidence 5677899999999999854
No 6
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=98.58 E-value=1.5e-07 Score=68.94 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=49.0
Q ss_pred CCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEE--eCCeEEeecCCcccc
Q psy4551 96 VKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVD--YGDSMDMPQPSVYQL 173 (321)
Q Consensus 96 ~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fID--yGn~~~V~~~~Lr~L 173 (321)
.++|+.|-|.+..++.||||+|+++.+ ...+.|+|.| +|+.+.++.++||++
T Consensus 3 ~~~G~~Ve~~~~~~~~W~~a~V~~~~~--------------------------~~~~~V~~~~~~~~~~e~v~~~~LRp~ 56 (61)
T smart00743 3 FKKGDRVEVFSKEEDSWWEAVVTKVLG--------------------------DGKYLVRYLTESEPLKETVDWSDLRPH 56 (61)
T ss_pred cCCCCEEEEEECCCCEEEEEEEEEECC--------------------------CCEEEEEECCCCcccEEEEeHHHcccC
Confidence 678999999998899999999999743 2379999999 999999999999999
Q ss_pred Ccc
Q psy4551 174 NPT 176 (321)
Q Consensus 174 ~~~ 176 (321)
++.
T Consensus 57 ~~w 59 (61)
T smart00743 57 PPW 59 (61)
T ss_pred CCC
Confidence 864
No 7
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=98.18 E-value=1.9e-06 Score=81.30 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=46.6
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
...+++|+.|.|.|++||+||.|.|..|... ..++.|.|.+|||.+.|.+++|++
T Consensus 66 ~~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~-------------------------~~~~~V~f~gYgn~e~v~l~dL~~ 120 (264)
T PF06003_consen 66 NKKWKVGDKCMAVYSEDGQYYPATIESIDEE-------------------------DGTCVVVFTGYGNEEEVNLSDLKP 120 (264)
T ss_dssp TT---TT-EEEEE-TTTSSEEEEEEEEEETT-------------------------TTEEEEEETTTTEEEEEEGGGEEE
T ss_pred ccCCCCCCEEEEEECCCCCEEEEEEEEEcCC-------------------------CCEEEEEEcccCCeEeeehhhhcc
Confidence 4579999999999999999999999998532 248999999999999999999999
Q ss_pred cCcc
Q psy4551 173 LNPT 176 (321)
Q Consensus 173 L~~~ 176 (321)
....
T Consensus 121 ~~~~ 124 (264)
T PF06003_consen 121 SEGD 124 (264)
T ss_dssp TT--
T ss_pred cccc
Confidence 8866
No 8
>KOG2279|consensus
Probab=97.59 E-value=2.2e-05 Score=79.41 Aligned_cols=204 Identities=24% Similarity=0.263 Sum_probs=116.8
Q ss_pred EccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEE-EEEccCCeEEEEEEEEecCCceee----
Q psy4551 53 VANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVA-ALLHLDQKWYRAQVMTVKPGQIVA---- 127 (321)
Q Consensus 53 V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~ca-a~~~~d~~WyRa~V~~i~~~~~~~---- 127 (321)
..++.-||+++.+.-...|.-+..++-.+|.+..+...+....+..+.+.. ..|..+|+|||+-+.-+..+.+.+
T Consensus 292 ~~~l~i~e~e~p~~lsg~lig~~gey~s~yssasn~~~hi~t~pyt~~v~~~qic~~egkqh~~n~vl~ml~~~~p~~~f 371 (608)
T KOG2279|consen 292 SEALAIPEMEMPEILSGDLIGHAGEYLSVYSSASNHPNHIWTQPYTSRVLQLQICVNEGKQHYENSVLEMLTVHVPDIVF 371 (608)
T ss_pred ccccccceeecCcccccchhhhhhhhhhhhhhccCccceEEeccccchhhhhhhheecchhHHHHHHHhhhhccCCcccc
Confidence 344445555555433334444445555555544432222222333333322 222235555555443322221111
Q ss_pred eeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecceeeCCCCChHHHHHHH
Q psy4551 128 ALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCF 207 (321)
Q Consensus 128 ~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~LagV~P~~~~Ws~ea~~~f 207 (321)
..|..-+-|+++-+.--.+. -.-...++||+....+.+..+..+...+..+|.+++.|.++ + +..+.|-..+...
T Consensus 372 ~eLnl~~~~~p~lps~al~~--L~td~~wL~fpd~i~cev~V~s~i~a~hlf~pq~tip~F~a-L-rsldqwm~l~y~e- 446 (608)
T KOG2279|consen 372 AELNLNGSWYPALPSGALEN--LNTDLYWLDFPDNIDCEVKVLSAIRADHLFLPQQTIPCFLA-L-RSLDQWMELAYDE- 446 (608)
T ss_pred ccccccCccCcccCcccccc--cCCcceEEEcCCCceEEeeeehhhcccceeeccccchhhhh-h-hhHHHHHHHHhhc-
Confidence 12333345555444332222 24567899999999999999999999999999999999999 2 3345676655443
Q ss_pred HHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCccccHHHHHHHcCCccc
Q psy4551 208 EDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVS 267 (321)
Q Consensus 208 ~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~~sIn~~LI~~GlA~~ 267 (321)
+.....-.+.+.+.+...-.. .+..-+.+.||+...+.+.+|...||..||+..
T Consensus 447 -q~t~pelP~P~~~t~~sAAp~-----g~~awpra~lvd~~det~l~I~~~~VdyGY~~~ 500 (608)
T KOG2279|consen 447 -QLTHPELPKPLVATISSAAPT-----GISAWPRAYLVDTSDETKLDIGLELVDYGYAIE 500 (608)
T ss_pred -ccCCcCCCcchhhceeeeccc-----CCCCccceEEEeccCcccchhhheeeccccccc
Confidence 333322246666666654432 123456789999877778889999999997776
No 9
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=96.93 E-value=0.015 Score=48.80 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=50.0
Q ss_pred eEEEEEecceeeC------------CCCChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCC
Q psy4551 183 QAIECSLANVRPV------------GDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGE 250 (321)
Q Consensus 183 qAi~C~LagV~P~------------~~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~ 250 (321)
+.+.++|+||..+ ...|..+|.+++++++.+ +.+.+.+...+. .+.+...+|...
T Consensus 24 ~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g---~~V~~~~~~~D~--------~gr~~a~v~~~~-- 90 (138)
T smart00318 24 KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLG---KKVQVEVDSKDR--------YGRFLGTVYLNG-- 90 (138)
T ss_pred CEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCC---CEEEEEEeccCC--------CCCEEEEEEECC--
Confidence 4567778888733 135678999999999975 788877755321 233445555543
Q ss_pred ccccHHHHHHHcCCcccc
Q psy4551 251 QDVNISQELISRGFAVSS 268 (321)
Q Consensus 251 ~~~sIn~~LI~~GlA~~~ 268 (321)
..+||..||+.|||...
T Consensus 91 -~~~l~~~Lv~~G~A~~~ 107 (138)
T smart00318 91 -GNNIAEELVKEGLAKVY 107 (138)
T ss_pred -CCcHHHHHHhcCCEEEE
Confidence 23699999999999984
No 10
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=96.78 E-value=0.0062 Score=48.41 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=50.4
Q ss_pred EEEeccee-eC-------CCCChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCccccHHH
Q psy4551 186 ECSLANVR-PV-------GDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQ 257 (321)
Q Consensus 186 ~C~LagV~-P~-------~~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~~sIn~ 257 (321)
+.+|.||. |. ...|..+|.+++++++.+ +.+.+.+..... +..+.+.+.+|.. ..+||.
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~---~~~~~~~~~~~~------d~~gr~~~~v~~~----~~~in~ 67 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLG---RQVVVEVDDIKQ------DKYGRLLAYVYVD----GEDINE 67 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHT---CSCEEEEEESSB------STTSCEEEEEEET----TEEHHH
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCC---CeeeecccccCC------CCCCceeEEEEEe----chhhhH
Confidence 46899998 54 258999999999999986 455555544310 1234456777765 569999
Q ss_pred HHHHcCCcccc
Q psy4551 258 ELISRGFAVSS 268 (321)
Q Consensus 258 ~LI~~GlA~~~ 268 (321)
.||+.|||...
T Consensus 68 ~Ll~~GlA~v~ 78 (108)
T PF00565_consen 68 ELLEEGLARVY 78 (108)
T ss_dssp HHHHTTSSEE-
T ss_pred HHHhCCeEEEE
Confidence 99999999974
No 11
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=96.67 E-value=0.0065 Score=43.89 Aligned_cols=52 Identities=13% Similarity=0.335 Sum_probs=39.4
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr 171 (321)
.....|+.|-++++.++.||.|+|++.. .....+.|.|-| |....+.-++|+
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d-------------------------~~~~~y~V~Y~D-Gtel~lke~dik 55 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYD-------------------------SKSDRYTVLYED-GTELELKENDIK 55 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEE-------------------------TTTTEEEEEETT-S-EEEEECCCEE
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEec-------------------------ccCceEEEEEcC-CCEEEecccccC
Confidence 4578899999999999999999999963 233589999999 999999888874
No 12
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=95.89 E-value=0.046 Score=45.10 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=51.1
Q ss_pred eEEEEEeccee-eC-----------CCCChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCC
Q psy4551 183 QAIECSLANVR-PV-----------GDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGE 250 (321)
Q Consensus 183 qAi~C~LagV~-P~-----------~~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~ 250 (321)
+.+..+|+||. |. ...|..+|.+++++++.+ +.+.+++...+ ..+.+...+|...
T Consensus 16 ~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~---~~V~i~~~~~d--------~~gr~la~v~~~~-- 82 (129)
T cd00175 16 PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLG---KKVQVEVDSKD--------RYGRTLGTVYLNG-- 82 (129)
T ss_pred CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCC---CEEEEEEccCC--------CCCCEEEEEEeCC--
Confidence 45677788876 32 235778999999999986 77777665422 1233445666543
Q ss_pred ccccHHHHHHHcCCccccC
Q psy4551 251 QDVNISQELISRGFAVSSK 269 (321)
Q Consensus 251 ~~~sIn~~LI~~GlA~~~~ 269 (321)
..+||..||++|||....
T Consensus 83 -~~~v~~~Lv~~G~A~~~~ 100 (129)
T cd00175 83 -GENIAEELVKEGLARVYR 100 (129)
T ss_pred -CCcHHHHHHhcCCEEEEE
Confidence 358999999999999843
No 13
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=95.64 E-value=0.028 Score=42.10 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=32.6
Q ss_pred CCCCEEEEEEcc---CCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeC--------CeEEe
Q psy4551 97 KPGQIVAALLHL---DQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYG--------DSMDM 165 (321)
Q Consensus 97 ~~G~~caa~~~~---d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyG--------n~~~V 165 (321)
++|+.+=+...+ .|.||+|.|++...+ ..+.|.|-|+- ..+.|
T Consensus 2 ~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~--------------------------~~~~V~Y~~~~~~~~~~~~l~e~V 55 (68)
T PF05641_consen 2 KKGDEVEVSSDEDGFRGAWFPATVLKENGD--------------------------DKYLVEYDDLPDEDGESPPLKEWV 55 (68)
T ss_dssp -TT-EEEEEE-SBTT--EEEEEEEEEEETT---------------------------EEEEEETT-SS--------EEEE
T ss_pred CCCCEEEEEEcCCCCCcEEEEEEEEEeCCC--------------------------cEEEEEECCcccccccccccEEEe
Confidence 467777666433 368999999997432 17888886543 36889
Q ss_pred ecCCccccCcc
Q psy4551 166 PQPSVYQLNPT 176 (321)
Q Consensus 166 ~~~~Lr~L~~~ 176 (321)
+...|||.|+.
T Consensus 56 ~~~~iRP~pP~ 66 (68)
T PF05641_consen 56 DARRIRPCPPP 66 (68)
T ss_dssp EGGGEEE----
T ss_pred chheEECcCcC
Confidence 99999999875
No 14
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=93.72 E-value=0.16 Score=36.39 Aligned_cols=52 Identities=15% Similarity=0.406 Sum_probs=37.5
Q ss_pred CCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeecCCcc
Q psy4551 96 VKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQPSVY 171 (321)
Q Consensus 96 ~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~~~Lr 171 (321)
+.+|+.|.+.+ .++.||.|+|+++... .+...+.|+|..+... +.|+.++|+
T Consensus 1 ~~vG~~v~~~~-~~~~~y~A~I~~~r~~-----------------------~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKY-KDGQWYEAKILDIREK-----------------------NGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEE-TTTEEEEEEEEEEEEC-----------------------TTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CCcCCEEEEEE-CCCcEEEEEEEEEEec-----------------------CCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 35788899987 6899999999998532 2234788888876654 577777764
No 15
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=93.62 E-value=0.18 Score=42.43 Aligned_cols=52 Identities=25% Similarity=0.354 Sum_probs=42.6
Q ss_pred CCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCccc
Q psy4551 99 GQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTF 177 (321)
Q Consensus 99 G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f 177 (321)
|+-++|+...||-||||.|.+... ...+.|.| |.|..+.|+..++-++....
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~~--------------------------~~~~lV~f-~~~~~~~v~~~~iI~~~~~~ 52 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCVS--------------------------SGQFLVEF-DDGDTQEVPISDIIALSDAM 52 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEccC--------------------------CCEEEEEE-CCCCEEEeChHHeEEccCcc
Confidence 677899999999999999999531 23788888 88999999999998776543
No 16
>KOG3026|consensus
Probab=93.54 E-value=0.17 Score=46.94 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=52.8
Q ss_pred CCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCc
Q psy4551 96 VKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNP 175 (321)
Q Consensus 96 ~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~ 175 (321)
+.+|+-|.|.|+.||.||=|.|..|.+. +..+.+-|--||+...++..++|..+.
T Consensus 91 w~vg~K~~A~~~ddg~~y~AtIe~ita~-------------------------~~~~ai~f~s~~~a~~t~~a~lr~~e~ 145 (262)
T KOG3026|consen 91 WKVGDKVQAVFSDDGQIYDATIEHITAM-------------------------EGTVAIIFASYGTAPSTYAARLRSPEE 145 (262)
T ss_pred cccCCEEEEeecCCCceEEeehhhccCC-------------------------CCceeEEEeeccccccccHhhccCcch
Confidence 7789999999999999999999998542 247899999999999999999997765
Q ss_pred c------cccCCceE
Q psy4551 176 T------FLGLRFQA 184 (321)
Q Consensus 176 ~------f~~lP~qA 184 (321)
. +...|.++
T Consensus 146 ~~s~~~~~~n~P~~~ 160 (262)
T KOG3026|consen 146 KSSAAYTANNKPIQN 160 (262)
T ss_pred hhhhhcccCCCcchh
Confidence 3 34556555
No 17
>PRK06518 hypothetical protein; Provisional
Probab=92.21 E-value=0.7 Score=41.24 Aligned_cols=70 Identities=23% Similarity=0.159 Sum_probs=46.7
Q ss_pred EEEEEeccee-eC-C-------C--CChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCcc
Q psy4551 184 AIECSLANVR-PV-G-------D--VWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQD 252 (321)
Q Consensus 184 Ai~C~LagV~-P~-~-------~--~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~ 252 (321)
.++++|+||. |- + . .+..+|.++|..++.+ +.+.+++.. + +.+. ....+|.. .
T Consensus 48 ~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~g---k~V~~~~~~--D-----~ygR--~lA~~~~~----g 111 (177)
T PRK06518 48 TRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLN---KWLSCRQAR--M-----ENGV--HYAQCFVD----G 111 (177)
T ss_pred CeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCC---CeEEEEEec--c-----cCCC--EEEEEEEC----C
Confidence 5678888887 33 1 1 2468999999999975 777776533 2 1222 23344432 3
Q ss_pred ccHHHHHHHcCCccccC
Q psy4551 253 VNISQELISRGFAVSSK 269 (321)
Q Consensus 253 ~sIn~~LI~~GlA~~~~ 269 (321)
.+||.+||++|+|..-.
T Consensus 112 ~dln~~mV~~G~A~ay~ 128 (177)
T PRK06518 112 VDIAALGLAEGMAVLSK 128 (177)
T ss_pred EEHHHHHHhCCCEEEEe
Confidence 48999999999998743
No 18
>KOG4327|consensus
Probab=91.52 E-value=0.14 Score=46.28 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=45.7
Q ss_pred ccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc
Q psy4551 92 RLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 92 ~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr 171 (321)
....++.|+.|.|.|++++..|-|.|..|.- ...+..|.|+=|||.+.|.+++|.
T Consensus 64 ~~~~wKVgdkc~A~Y~e~g~~ypatidsi~~-------------------------~~~tcvv~ylgygnr~Ev~lsDLl 118 (218)
T KOG4327|consen 64 SLQQWKVGDKCSAIYSEDGCIYPATIDSIDF-------------------------KRETCVVVYLGYGNREEVNLSDLL 118 (218)
T ss_pred chhhheecceeeeeeecCcccccceeccccc-------------------------ccCceEEEEEeecchhhhhHHHhc
Confidence 3567899999999999999999999999731 123566999999999999988884
No 19
>KOG3038|consensus
Probab=88.75 E-value=4 Score=38.43 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=49.5
Q ss_pred CCCCEEEEEEEEEccCCeEEEEEcCCchhHHHHHHH----HHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEE
Q psy4551 41 SSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVE----SMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQ 116 (321)
Q Consensus 41 ~~g~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~----~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~ 116 (321)
..|+.+-+.|.++.+-+..=|...+++-.+...... .|..+.-.+ ..++...+.+|.+|.|.|++.-++|||.
T Consensus 143 ~dg~WIlaeVv~~~~~~~ye~ev~D~Epk~d~~g~r~~~yklp~~~~~p---~p~p~~~fpp~~~VLA~YP~TTcFY~ai 219 (264)
T KOG3038|consen 143 EDGDWILAEVVKVSSETRYEFEVVDPEPKKDEVGNRGQLYKLPRWKLNP---IPPPTALFPPGTIVLAVYPGTTCFYKAI 219 (264)
T ss_pred CCCCEEEEEEEEEecCCceEeEecCCCccccccccccceecccHhhcCC---CCCCccCCCCCCEEEEEcCCcceeeeeE
Confidence 567788888888887776335555543222211111 122222111 1234556889999999999889999999
Q ss_pred EEEecC
Q psy4551 117 VMTVKP 122 (321)
Q Consensus 117 V~~i~~ 122 (321)
|.+-.+
T Consensus 220 Vh~tp~ 225 (264)
T KOG3038|consen 220 VHSTPR 225 (264)
T ss_pred eecCCC
Confidence 998543
No 20
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=87.94 E-value=2.8 Score=37.23 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=49.9
Q ss_pred ceEEEEEecceeeC--C--------CCChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCc
Q psy4551 182 FQAIECSLANVRPV--G--------DVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQ 251 (321)
Q Consensus 182 ~qAi~C~LagV~P~--~--------~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~ 251 (321)
.++++.+|+||.++ . ..|-.+|.++|++++.+ .+.+.+.+....+ +.+..+ -..| ..
T Consensus 62 ~~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~--~~~v~~~~~~~~d-----~y~R~l--a~v~----~~ 128 (192)
T COG1525 62 GQAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLG--RRTVECDLADRKD-----RYGRLL--AYVT----VD 128 (192)
T ss_pred CceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcC--CceEEEecCCccc-----CCCcEE--EEEE----EC
Confidence 67888888888744 1 46778999999999985 3666665543011 222222 2223 13
Q ss_pred cccHHHHHHHcCCccccC
Q psy4551 252 DVNISQELISRGFAVSSK 269 (321)
Q Consensus 252 ~~sIn~~LI~~GlA~~~~ 269 (321)
..+||.+||++|+|..-.
T Consensus 129 ~~~v~~~lV~~G~A~~~~ 146 (192)
T COG1525 129 GTDVNLELVKEGLARVYY 146 (192)
T ss_pred CEEHHHHHHhCCCEEEec
Confidence 568999999999988743
No 21
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=85.90 E-value=0.8 Score=31.10 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=13.8
Q ss_pred eeeeeeecccceeeeeee
Q psy4551 125 IVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 125 ~~~~~~~~~~~~~r~~v~ 142 (321)
.|++....|++||||.|.
T Consensus 3 ~c~a~~~~d~~wyra~V~ 20 (48)
T cd04508 3 LCLAKYSDDGKWYRAKIT 20 (48)
T ss_pred EEEEEECCCCeEEEEEEE
Confidence 466778888999997554
No 22
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=83.45 E-value=4.4 Score=33.96 Aligned_cols=106 Identities=13% Similarity=0.197 Sum_probs=70.8
Q ss_pred CCCCEEEEEEEEEccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEcc-CCeEEEEEEEE
Q psy4551 41 SSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHL-DQKWYRAQVMT 119 (321)
Q Consensus 41 ~~g~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~-d~~WyRa~V~~ 119 (321)
+.|-+..-.|....+.++|.|+..+...... ....+-... . .....++.||.|+|+... +..|+-|+|+.
T Consensus 10 ~DG~YY~GtV~~~~~~~~~lV~f~~~~~~~v--~~~~iI~~~---~----~~~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~ 80 (124)
T PF15057_consen 10 EDGFYYPGTVKKCVSSGQFLVEFDDGDTQEV--PISDIIALS---D----AMRHSLQVGDKVLAPWEPDDCRYGPGTVIA 80 (124)
T ss_pred CCCcEEeEEEEEccCCCEEEEEECCCCEEEe--ChHHeEEcc---C----cccCcCCCCCEEEEecCcCCCEEeCEEEEE
Confidence 4567788889998899999999954321111 111121111 1 113569999999999642 34699999997
Q ss_pred ecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCccc
Q psy4551 120 VKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTF 177 (321)
Q Consensus 120 i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f 177 (321)
..... ....+.+.|.|.| |....|+...++.||+.+
T Consensus 81 ~~~~~---------------------~~~~~~~~V~f~n-g~~~~vp~~~~~~I~~~~ 116 (124)
T PF15057_consen 81 GPERR---------------------ASEDKEYTVRFYN-GKTAKVPRGEVIWISPSY 116 (124)
T ss_pred Ccccc---------------------ccCCceEEEEEEC-CCCCccchhhEEECCHHH
Confidence 42110 1123589999998 778899999999998764
No 23
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=80.36 E-value=8.8 Score=29.60 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=45.7
Q ss_pred cCCCCCEEEEEEcc------CCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecC
Q psy4551 95 EVKPGQIVAALLHL------DQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQP 168 (321)
Q Consensus 95 ~~~~G~~caa~~~~------d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~ 168 (321)
.++.|+++++.-.+ ++.|+=|.|+....+. ..+.....++|--||-|....|+..
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~gga-------------------R~P~~~tlFQVadVDtG~I~wVnaD 65 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGGA-------------------RDPKVPTLFQVADVDTGVIRWVNAD 65 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEEEEEEEEeccc-------------------cCCCCCceEEEEEccCCeEEEEEch
Confidence 58899999998543 4579999999876432 1233456799999999999999987
Q ss_pred Ccccc
Q psy4551 169 SVYQL 173 (321)
Q Consensus 169 ~Lr~L 173 (321)
.+.++
T Consensus 66 ~Vt~I 70 (75)
T PF11302_consen 66 EVTHI 70 (75)
T ss_pred heeee
Confidence 76554
No 24
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=74.49 E-value=6.6 Score=33.24 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=53.1
Q ss_pred CCCCEEEEEEEEEccCC-eEEEEEcCCchhHHHHHHHHHHHHHhhcCc----------ccccccccCCCCCEEEEEEccC
Q psy4551 41 SSDGSLTVFMSAVANPD-RFWVQIMNDRAIELDQLVESMTDYYNQKAN----------QETHRLTEVKPGQIVAALLHLD 109 (321)
Q Consensus 41 ~~g~~~~V~Vt~V~sp~-~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~----------~~~~~~~~~~~G~~caa~~~~d 109 (321)
..+..+-+.|..+.+-+ .+-|+-.+++. +.+ .|..... ...........|..|.|.|.+.
T Consensus 15 ~~~~WIla~Vv~~~~~~~rYeV~D~d~~~--------~~~-~~~~~~~~iIPLP~~~~~~~~~~~~f~~g~~VLAlYP~T 85 (130)
T PF07039_consen 15 EEEEWILAEVVKYNSDGNRYEVEDPDPEE--------EKK-RYKLSRKQIIPLPKKAPPDTDPLAEFPKGTKVLALYPDT 85 (130)
T ss_dssp TTCEEEEEEEEEEETTTTEEEEEETTTCT--------TTE-EEEEEGGGEEEE-SB--TTT-GGGS--TT-EEEEE-TTS
T ss_pred CCCCEEEEEEEEEeCCCCEEEEecCCCCC--------CCc-eEEeCHHHEEECCCccCCCCCchhhCCCCCEEEEECCCC
Confidence 34778888888877666 77788887641 000 1111100 0011234578999999999988
Q ss_pred CeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe
Q psy4551 110 QKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS 162 (321)
Q Consensus 110 ~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~ 162 (321)
-++|||.|...... ....+.+.|-|-...
T Consensus 86 T~FY~A~V~~~p~~------------------------~~~~y~l~Fedd~~~ 114 (130)
T PF07039_consen 86 TCFYPATVVSPPKK------------------------KSGEYKLKFEDDEDA 114 (130)
T ss_dssp SEEEEEEEEEE-SS------------------------TTS-EEEEECTTTST
T ss_pred ceEEEEEEEeCCCC------------------------CCCcEEEEEeCCCCc
Confidence 99999999996321 123688888887765
No 25
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=67.40 E-value=6.1 Score=27.62 Aligned_cols=20 Identities=45% Similarity=0.818 Sum_probs=14.5
Q ss_pred Cceeeeeeecccceeeeeeec
Q psy4551 123 GQIVAALLHLDQKWYRAQVMT 143 (321)
Q Consensus 123 ~~~~~~~~~~~~~~~r~~v~~ 143 (321)
+..|++.. .++.||||.|.+
T Consensus 6 G~~~~a~~-~d~~wyra~I~~ 25 (57)
T smart00333 6 GDKVAARW-EDGEWYRARIIK 25 (57)
T ss_pred CCEEEEEe-CCCCEEEEEEEE
Confidence 44566777 789999986653
No 26
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=66.32 E-value=11 Score=29.41 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCc
Q psy4551 96 VKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNP 175 (321)
Q Consensus 96 ~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~ 175 (321)
..+||+|-|+. ..--|+=|+|++.... ......+.|+|...+....|+.++|.++.+
T Consensus 3 f~~GdlVwaK~-kGyp~WPa~I~~~~~~----------------------~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~ 59 (83)
T cd05834 3 FKAGDLVFAKV-KGYPAWPARVDEPEDW----------------------KPPGKKYPVYFFGTHETAFLKPEDLFPYTE 59 (83)
T ss_pred CCCCCEEEEec-CCCCCCCEEEeccccc----------------------CCCCCEEEEEEeCCCCEeEECHHHceeccc
Confidence 67899999997 4557999999985310 112358999999999999999999999987
Q ss_pred ccc
Q psy4551 176 TFL 178 (321)
Q Consensus 176 ~f~ 178 (321)
.+.
T Consensus 60 ~~~ 62 (83)
T cd05834 60 NKK 62 (83)
T ss_pred chh
Confidence 653
No 27
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=66.31 E-value=12 Score=28.72 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=47.6
Q ss_pred CCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcc
Q psy4551 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPT 176 (321)
Q Consensus 97 ~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~ 176 (321)
..|++|-|+.. .--|+-|+|++...... .+ ........+.|+|.+-.....|+.++|.++...
T Consensus 2 ~~GdlVwaK~~-g~pwWPa~V~~~~~~~~--------------~~--~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~ 64 (87)
T cd05162 2 RPGDLVWAKMK-GYPWWPALVVDPPKDSK--------------KA--KKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEH 64 (87)
T ss_pred CCCCEEEEeCC-CCCCCCEEEccccccch--------------hh--hccCCCCEEEEEEeCCCcEEEeCccceeeccch
Confidence 57999999973 45799999998542110 00 001123589999999888889999999999887
Q ss_pred ccc
Q psy4551 177 FLG 179 (321)
Q Consensus 177 f~~ 179 (321)
+..
T Consensus 65 ~~~ 67 (87)
T cd05162 65 KES 67 (87)
T ss_pred HHh
Confidence 754
No 28
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=63.52 E-value=19 Score=26.25 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=42.6
Q ss_pred CCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 97 ~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
+.|+++-|+. ..--|+-|+|....... .. +.+ .......+.|+|..-+....|+.++|.+|
T Consensus 2 ~~GdlVwaK~-~G~p~WPa~V~~~~~~~----------~~----~~~-~~~~~~~~~V~Ffg~~~~awv~~~~l~p~ 62 (63)
T smart00293 2 KPGDLVWAKM-KGFPWWPALVVSPKETP----------DN----IRK-RKRFENLYPVLFFGDKDTAWISSSKLFPL 62 (63)
T ss_pred CCCCEEEEEC-CCCCCCCeEEcCcccCC----------hh----Hhh-ccCCCCEEEEEEeCCCCEEEECccceeeC
Confidence 5799999997 24479999999853110 00 000 01234589999999999999999999876
No 29
>KOG2039|consensus
Probab=59.47 E-value=18 Score=40.06 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=58.9
Q ss_pred CeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEe
Q psy4551 110 QKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSL 189 (321)
Q Consensus 110 ~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~L 189 (321)
+.|++..+..+..+ .+..+.+.|.|+........+.--..-...+|...+.|.+
T Consensus 467 ~~~~~~~~~~i~~n--------------------------~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~ 520 (875)
T KOG2039|consen 467 TLRITDLTVDIVRN--------------------------KVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQF 520 (875)
T ss_pred ceeechhhhhhhcC--------------------------cEEeehhhccccceeeeeeeeeccccceeccCCcceeEEE
Confidence 57888888887533 2456666666665544444443333333466766666665
Q ss_pred ccee---e--------CCCCChHHHHHHHHHhhcccCceEEEEEEEEEec
Q psy4551 190 ANVR---P--------VGDVWSEEAISCFEDLTHVAQWKVLLARVESYKE 228 (321)
Q Consensus 190 agV~---P--------~~~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~ 228 (321)
+.-. | .+..|..+++++.+.++.+ +.+...+.....
T Consensus 521 ~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~---~~~~l~v~~~~~ 567 (875)
T KOG2039|consen 521 ALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQ---REVELEVEITDK 567 (875)
T ss_pred eeccccCcccccccccccCCccHHHHHHhhhheec---cceEEEEeeecc
Confidence 5432 3 2678999999999999986 778888766543
No 30
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=56.55 E-value=21 Score=36.48 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=43.1
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeecCCc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQPSV 170 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~~~L 170 (321)
...+.+|+.|.|....|+.||.|+|+++...+ -.+.+...+-|+|+.+=.. +.|+.+.|
T Consensus 51 ~~~~~VGekVla~~~~Dg~~~~A~VI~~R~~~-------------------~~~~~~~~YYVHY~g~nrRlDEWV~~~rL 111 (450)
T PLN00104 51 MLPLEVGTRVMCRWRFDGKYHPVKVIERRRGG-------------------SGGPNDYEYYVHYTEFNRRLDEWVKLEQL 111 (450)
T ss_pred cceeccCCEEEEEECCCCCEEEEEEEEEeccC-------------------CCCCCCceEEEEEecCCccHhhccCHhhc
Confidence 34588999999998778999999999975311 0011223689999977766 67777777
Q ss_pred c
Q psy4551 171 Y 171 (321)
Q Consensus 171 r 171 (321)
.
T Consensus 112 d 112 (450)
T PLN00104 112 D 112 (450)
T ss_pred c
Confidence 4
No 31
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=50.98 E-value=37 Score=26.40 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=39.9
Q ss_pred CCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeC-CeEEeecCCccccCc
Q psy4551 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYG-DSMDMPQPSVYQLNP 175 (321)
Q Consensus 97 ~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyG-n~~~V~~~~Lr~L~~ 175 (321)
..|++|-|+. ..--|.-|+|.++.. ....+.|+|+.-+ ....+..++|.+-.+
T Consensus 2 ~~gdlVWaK~-~g~P~WPa~I~~~~~-------------------------~~~k~~V~FfG~~~~~a~~~~~~l~p~~~ 55 (80)
T cd06080 2 EKNDLVWAKI-QGYPWWPAVIKSISR-------------------------KKQKARVNFIGDNMQSEKKGIRVVKRWLK 55 (80)
T ss_pred CCCCEEEEeC-CCCCCCCEEEeeecC-------------------------CCCEEEEEEeCCCCceeccchhhcccccc
Confidence 5799999997 345688999998632 2358999998777 666777777766555
Q ss_pred cc
Q psy4551 176 TF 177 (321)
Q Consensus 176 ~f 177 (321)
.|
T Consensus 56 ~~ 57 (80)
T cd06080 56 HF 57 (80)
T ss_pred cH
Confidence 44
No 32
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=48.81 E-value=45 Score=25.09 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=44.2
Q ss_pred CCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcc
Q psy4551 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPT 176 (321)
Q Consensus 97 ~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~ 176 (321)
..|++|-|+. ..--|+=|+|+...... + .......+.|+|.+-.....|+.++|+++.+.
T Consensus 2 ~~GdlVWaK~-~g~pwWPa~V~~~~~~~---------~----------~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~~~ 61 (86)
T PF00855_consen 2 RPGDLVWAKL-KGYPWWPARVCDPDEKS---------K----------KKRKDGHVLVRFFGDNDYAWVKPSNIKPFSEF 61 (86)
T ss_dssp STTEEEEEEE-TTSEEEEEEEEECCHCT---------S----------CSSSSTEEEEEETTTTEEEEEEGGGEEECCHH
T ss_pred CCCCEEEEEe-CCCCCCceEEeeccccc---------c----------cCCCCCEEEEEecCCCCEEEECHHHhhChhhh
Confidence 5799999998 35679999999853100 0 12234589999988888889999999988743
No 33
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=48.80 E-value=30 Score=27.15 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=43.6
Q ss_pred CCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEE-eCCeEEeecCCccccC
Q psy4551 96 VKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVD-YGDSMDMPQPSVYQLN 174 (321)
Q Consensus 96 ~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fID-yGn~~~V~~~~Lr~L~ 174 (321)
...|++|-|+. ..=-|+=|+|++.. + ..+.|+|.. -.....|+.++|.++.
T Consensus 7 ~~p~dLVwAK~-kGyp~WPAkV~~~~------------------------~---~~~~V~FFG~t~~~a~v~~~~i~~~~ 58 (83)
T cd05841 7 RPPHELVWAKL-KGFPYWPAKVMRVE------------------------D---NQVDVRFFGGQHDRAWIPSNNIQPIS 58 (83)
T ss_pred CCCCCEEEEeC-CCCCCCCEEEeecC------------------------C---CeEEEEEcCCCCCeEEEehHHeeehh
Confidence 57899999996 34468899999842 2 379999987 8889999999999998
Q ss_pred ccc
Q psy4551 175 PTF 177 (321)
Q Consensus 175 ~~f 177 (321)
..+
T Consensus 59 ~~~ 61 (83)
T cd05841 59 TEI 61 (83)
T ss_pred hhh
Confidence 765
No 34
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=43.39 E-value=50 Score=27.82 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=33.6
Q ss_pred CCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 97 ~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
-+|.-|.|+++.++-||-++|+.-.+ ...+.|.|=| |....|..++|-..
T Consensus 4 ~iG~rV~AkWS~n~yyY~G~I~~~~~--------------------------~~kykv~FdD-G~~~~v~~~div~~ 53 (122)
T PF09038_consen 4 FIGLRVFAKWSDNGYYYPGKITSDKG--------------------------KNKYKVLFDD-GYECRVLGKDIVVC 53 (122)
T ss_dssp STT-EEEEESSTTSEEEEEEEEEEET--------------------------TTEEEEEETT-S-EEEEECCCEEEE
T ss_pred ccccEEEEEEccCCcccCceEeecCC--------------------------CCeEEEEecC-CccceeccCcEEEE
Confidence 36888999997555568999988322 2478887744 77777777777543
No 35
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=38.22 E-value=59 Score=25.77 Aligned_cols=63 Identities=22% Similarity=0.292 Sum_probs=43.8
Q ss_pred CCCCEEEEEEccCCeEEEEEEEEec--CCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccC
Q psy4551 97 KPGQIVAALLHLDQKWYRAQVMTVK--PGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLN 174 (321)
Q Consensus 97 ~~G~~caa~~~~d~~WyRa~V~~i~--~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~ 174 (321)
+.|++|-|+. ..--|+=|+|+.-. |... +. +-.......+.|+|..-+....|...+|.+|.
T Consensus 2 ~~GDlVwaK~-~GyPwWPA~V~~~~~~p~~~----l~-----------~~~~~~~~~~~V~FFg~~~~~Wv~~~~l~pl~ 65 (93)
T cd05840 2 QPGDRVLAKV-KGFPAWPAIVVPEEMLPDSV----LK-----------GKKKKNKRTYPVMFFPDGDYYWVPNKDLKPLT 65 (93)
T ss_pred CCCCEEEEeC-CCCCCCCEEECChHHCCHHH----Hh-----------cccCCCCCeEEEEEeCCCcEEEEChhhcccCC
Confidence 5799999996 24579999998621 1100 00 00112345899999998888999999999998
Q ss_pred c
Q psy4551 175 P 175 (321)
Q Consensus 175 ~ 175 (321)
.
T Consensus 66 ~ 66 (93)
T cd05840 66 E 66 (93)
T ss_pred H
Confidence 4
No 36
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=31.79 E-value=1.2e+02 Score=25.56 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=39.3
Q ss_pred CCCCEEEEEEc---cCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeC---CeEEeecCCc
Q psy4551 97 KPGQIVAALLH---LDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYG---DSMDMPQPSV 170 (321)
Q Consensus 97 ~~G~~caa~~~---~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyG---n~~~V~~~~L 170 (321)
++|+-|||+-. .++.|-=|+|++..++ ...++|.=+|-+ ..-.++.++|
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~~-------------------------~~rYeV~D~d~~~~~~~~~~~~~~i 55 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNSD-------------------------GNRYEVEDPDPEEEKKRYKLSRKQI 55 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEETT-------------------------TTEEEEEETTTCTTTEEEEEEGGGE
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeCC-------------------------CCEEEEecCCCCCCCceEEeCHHHE
Confidence 47999999863 4578999999997532 246888878776 3568889999
Q ss_pred cccCc
Q psy4551 171 YQLNP 175 (321)
Q Consensus 171 r~L~~ 175 (321)
-+||.
T Consensus 56 IPLP~ 60 (130)
T PF07039_consen 56 IPLPK 60 (130)
T ss_dssp EEE-S
T ss_pred EECCC
Confidence 99998
No 37
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=30.96 E-value=73 Score=24.76 Aligned_cols=63 Identities=10% Similarity=0.166 Sum_probs=46.0
Q ss_pred CCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcc
Q psy4551 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPT 176 (321)
Q Consensus 97 ~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~ 176 (321)
.+||+|-++- ..--|+=|+|++..... ........+.|+|..-+....|+.++|.++.+.
T Consensus 2 ~vGDlVWaK~-kg~pwWP~~V~~~~~~~-------------------~~~~~~~~~~V~fFGs~~~a~v~~~~l~pf~e~ 61 (87)
T cd05835 2 NVGDLVWGKI-KGFPWWPGRVVSITVTS-------------------KRPPVVGMRWVTWFGSGTFSEVSVDKLSPFSEF 61 (87)
T ss_pred CCCCEEEEec-CCCCCCCeEEechhhcc-------------------cccCCCCeEEEEEeCCCCEeEECHHHCcChhHh
Confidence 5799999986 35579999999853210 001123579999998888899999999998876
Q ss_pred ccc
Q psy4551 177 FLG 179 (321)
Q Consensus 177 f~~ 179 (321)
+..
T Consensus 62 ~~~ 64 (87)
T cd05835 62 FKA 64 (87)
T ss_pred HHH
Confidence 644
No 38
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=28.40 E-value=1.8e+02 Score=19.34 Aligned_cols=40 Identities=8% Similarity=0.131 Sum_probs=28.5
Q ss_pred EEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCC
Q psy4551 101 IVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPS 169 (321)
Q Consensus 101 ~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~ 169 (321)
.|=++- ....|-.|.|.+.. + ..+.|...| |....|+.++
T Consensus 3 ~vWvpD-~~egfv~g~I~~~~------------------------g---~~vtV~~~~-G~~~tv~~dd 42 (42)
T PF02736_consen 3 WVWVPD-PKEGFVKGEIIEEE------------------------G---DKVTVKTED-GKEVTVKKDD 42 (42)
T ss_dssp EEEEEE-SSSSEEEEEEEEEE------------------------S---SEEEEEETT-TEEEEEEGGG
T ss_pred EEEEeC-CcccEEEEEEEEEc------------------------C---CEEEEEECC-CCEEEeCCCC
Confidence 344443 35678899998853 2 379999999 9988887653
No 39
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=27.76 E-value=73 Score=21.42 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=19.9
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMT 119 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~ 119 (321)
-.++.|+.+.+.-..++.|++|+...
T Consensus 14 Ls~~~Gd~i~v~~~~~~~Ww~~~~~~ 39 (48)
T PF00018_consen 14 LSFKKGDIIEVLEKSDDGWWKVRNES 39 (48)
T ss_dssp SEB-TTEEEEEEEESSSSEEEEEETT
T ss_pred EeEECCCEEEEEEecCCCEEEEEECC
Confidence 35889999988766678999999664
No 40
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.54 E-value=3.3e+02 Score=25.29 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=59.5
Q ss_pred EEEEEEEeCCeEEeecCCccccCc--------ccccCCceEEEEEecceee-CCCCChHHHHHHHHHhhcccCceEEEEE
Q psy4551 152 LELYFVDYGDSMDMPQPSVYQLNP--------TFLGLRFQAIECSLANVRP-VGDVWSEEAISCFEDLTHVAQWKVLLAR 222 (321)
Q Consensus 152 v~V~fIDyGn~~~V~~~~Lr~L~~--------~f~~lP~qAi~C~LagV~P-~~~~Ws~ea~~~f~~l~~~~~~k~l~a~ 222 (321)
--+.++| |....+|.+.|.+|-. .|.-+|.+-++...-.+.- .....+++-.+.+.+++....++.+..
T Consensus 89 G~~~~v~-G~~~~ip~d~L~~Lg~g~~~Qi~~rFG~V~hlPvev~~v~~~~~~~~rltd~q~d~l~~W~~~~~drl~Vn- 166 (225)
T PF09883_consen 89 GYGVDVD-GIFVPIPKDELKPLGPGSPRQIRRRFGLVQHLPVEVEFVKVEDGIEARLTDEQVDRLYEWTRDGTDRLNVN- 166 (225)
T ss_pred ceEEEee-cccccCcHHHhcccCCCCHHHHHHHhCcccCCceEEEEEEcccCcccccCHHHHHHHHHHhhCCCCeEEEe-
Confidence 3566788 9999999999977643 4777777766666555532 234688999999999987532222111
Q ss_pred EEEEeccccccCCCCCccEEEEEeCCCCccccHHHHHHHcCCcccc
Q psy4551 223 VESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSS 268 (321)
Q Consensus 223 V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~~sIn~~LI~~GlA~~~ 268 (321)
+. ..-.|-..|.+.||++-.
T Consensus 167 --sa------------------------tr~ev~~alnrtGH~rDi 186 (225)
T PF09883_consen 167 --SA------------------------TRSEVRAALNRTGHARDI 186 (225)
T ss_pred --cc------------------------cHHHHHHHHHhcccccce
Confidence 10 112588889999999863
No 41
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=25.28 E-value=1.1e+02 Score=24.25 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=45.5
Q ss_pred CCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCc
Q psy4551 96 VKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNP 175 (321)
Q Consensus 96 ~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~ 175 (321)
+..|++|-|+.. .--|+=|+|..-. .. +..-. ........+.|+|........|..+.|.+..+
T Consensus 1 ~~~GdlVWaK~~-g~pwWPa~V~~~~--~~-----p~~~~--------~~~~~~~~~~V~Ffgs~~y~Wv~~~~l~pf~e 64 (95)
T cd05838 1 PLYGDIVWAKLG-NFRWWPAIICDPR--EV-----PPNIQ--------VLRHCIGEFCVMFFGTHDYYWVHRGRVFPYQE 64 (95)
T ss_pred CCcCCEEEEECC-CCCCCCeEEcChh--hc-----ChhHh--------hccCCCCeEEEEEeCCCCEEEeccccccchhh
Confidence 357999999983 4579999998731 10 00000 00112247999999999999999999988876
Q ss_pred cccc
Q psy4551 176 TFLG 179 (321)
Q Consensus 176 ~f~~ 179 (321)
.+..
T Consensus 65 ~~~~ 68 (95)
T cd05838 65 GDKG 68 (95)
T ss_pred hhhh
Confidence 5543
No 42
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=25.27 E-value=1.6e+02 Score=23.84 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=30.8
Q ss_pred CCCEEEEEEc-cCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEE-EEEeCCeEEeecCCccccCc
Q psy4551 98 PGQIVAALLH-LDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELY-FVDYGDSMDMPQPSVYQLNP 175 (321)
Q Consensus 98 ~G~~caa~~~-~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~-fIDyGn~~~V~~~~Lr~L~~ 175 (321)
.|.+|++.-. ..+.||-|.|+.-.-.+ + | +| ....+.|+ |.| |..-.|+..+++.+..
T Consensus 8 lGkVV~V~~~~~k~~W~PALVVsPsc~d--------d-------v-~V---kKD~~lVRSFkD-~KfysV~rkd~~e~~~ 67 (96)
T PF08169_consen 8 LGKVVCVESTKKKTSWFPALVVSPSCND--------D-------V-TV---KKDQCLVRSFKD-GKFYSVARKDVREFDI 67 (96)
T ss_dssp TTSEEEEE-SS-SS-EEEEEEE--SS-S--------S---------------TT-EEEEESSS---EEEE-TTTEE---S
T ss_pred cCcEEEEEcCCCCCceeeEEEEcCCccc--------e-------e-ee---ccceEEEEEecc-CceEEEEhhhhhhccc
Confidence 7999998643 22479999999832110 0 0 12 22368888 666 9999999999998775
Q ss_pred c
Q psy4551 176 T 176 (321)
Q Consensus 176 ~ 176 (321)
.
T Consensus 68 ~ 68 (96)
T PF08169_consen 68 D 68 (96)
T ss_dssp T
T ss_pred c
Confidence 4
No 43
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=23.57 E-value=1.5e+02 Score=25.11 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCccc
Q psy4551 109 DQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTF 177 (321)
Q Consensus 109 d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f 177 (321)
+-++|-|.++.... +...+.|.|-|.. ..+...+++.|+-..
T Consensus 21 ~~~yYPa~~~~~~~-------------------------~~~~~~V~Fedg~--~~i~~~dv~~LDlRI 62 (131)
T PF08605_consen 21 NLKYYPATCVGSGV-------------------------DRDRSLVRFEDGT--YEIKNEDVKYLDLRI 62 (131)
T ss_pred CCeEeeEEEEeecC-------------------------CCCeEEEEEecCc--eEeCcccEeeeeeec
Confidence 78999999999621 1236889998877 888899999887654
No 44
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=23.57 E-value=1.3e+02 Score=24.53 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=43.1
Q ss_pred CCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEE-eCCeEEeecCCccccC
Q psy4551 96 VKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVD-YGDSMDMPQPSVYQLN 174 (321)
Q Consensus 96 ~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fID-yGn~~~V~~~~Lr~L~ 174 (321)
...|++|-|+.. .--|+-|+|..-...+ ..-+ ..........+.|+|.+ .+....|+.++|.++.
T Consensus 3 ~~~GdlVWaK~~-g~PwWPa~V~~~~~~~----------~~~~---~~~~~~~~~~~~V~FFG~~~~~aWv~~~~l~pf~ 68 (110)
T cd05837 3 YQVGDLVWAKVS-GYPWWPCMVCSDPLLG----------TYTK---TKRNKRKPRQYHVQFFGDNPERAWISEKSLKPFK 68 (110)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEecccccc----------hhhh---hhhccCCCCeEEEEEcCCCCCEEEecHHHccccC
Confidence 567999999973 4569999999621100 0000 00011234578887776 4688899999999887
Q ss_pred cc
Q psy4551 175 PT 176 (321)
Q Consensus 175 ~~ 176 (321)
..
T Consensus 69 ~~ 70 (110)
T cd05837 69 GS 70 (110)
T ss_pred Cc
Confidence 54
No 45
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=22.90 E-value=1.5e+02 Score=24.43 Aligned_cols=73 Identities=14% Similarity=0.003 Sum_probs=43.1
Q ss_pred CCCCCEEEEEEccCCeEEEEEEEEecCCcee-----ee-eeecccceeeeeeecccCCCCCeEEEEEEEe-CCeEEeecC
Q psy4551 96 VKPGQIVAALLHLDQKWYRAQVMTVKPGQIV-----AA-LLHLDQKWYRAQVMTVSDSTPPTLELYFVDY-GDSMDMPQP 168 (321)
Q Consensus 96 ~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~-----~~-~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDy-Gn~~~V~~~ 168 (321)
+..|++|=|+. ..--||.|.|..-.....+ .+ .....+.-.| ...+...+.|+|.|= -....|+.+
T Consensus 1 ~~pg~lVwaK~-~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~------~~~~~~~~lV~FFd~~~s~~Wv~~~ 73 (111)
T cd05839 1 LEPLTLVWAKC-RGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARA------QNADERLYLVLFFDNKRTWQWLPGD 73 (111)
T ss_pred CCCcCEeeeee-cCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHh------ccCCCcEEEEEEecCCCcceecCHH
Confidence 35799999997 3556999999974210000 00 0000000000 122346788888875 677789999
Q ss_pred CccccCc
Q psy4551 169 SVYQLNP 175 (321)
Q Consensus 169 ~Lr~L~~ 175 (321)
+|.+|-.
T Consensus 74 ~l~pl~~ 80 (111)
T cd05839 74 KLEPLGV 80 (111)
T ss_pred HCccccc
Confidence 9998864
No 46
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=22.90 E-value=1.3e+02 Score=23.71 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=28.8
Q ss_pred EEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEE--eecCCccc
Q psy4551 103 AALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMD--MPQPSVYQ 172 (321)
Q Consensus 103 aa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~--V~~~~Lr~ 172 (321)
=|+....|.|+=|+|..+..+. -.+++.-.+.|.|=||..... +..++|||
T Consensus 3 D~~d~~~gAWfEa~i~~i~~~~-------------------~~~~e~viYhIkyddype~gvv~~~~~~iRp 55 (85)
T PF12148_consen 3 DARDRNMGAWFEAQIVTITKKC-------------------MSDDEDVIYHIKYDDYPENGVVEMRSKDIRP 55 (85)
T ss_dssp EEE-TTT-EEEEEEEEEEEES--------------------SSSSTTEEEEEEETT-GGG-EEEEEGGGEEE
T ss_pred ccccCCCcceEEEEEEEeeccC-------------------CCCCCCEEEEEEeccCCCcCceecccccccc
Confidence 3454557899999999985321 011233467888888876653 44555554
No 47
>KOG2185|consensus
Probab=22.28 E-value=56 Score=33.05 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.3
Q ss_pred cCCCCCEEEEEEccCCeEEEEEEEEec
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQVMTVK 121 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V~~i~ 121 (321)
.+..|..|.|+. .++.|+||+|..+.
T Consensus 180 ~L~~gs~vlak~-~sdiWh~ari~~vd 205 (486)
T KOG2185|consen 180 QLMVGSKVLAKS-GSDIWHKARIESVD 205 (486)
T ss_pred HHhhcCeeeeec-cchhhhhhheeeec
Confidence 467899999986 58999999999973
No 48
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=22.21 E-value=1.2e+02 Score=22.18 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.7
Q ss_pred CCCCeEEEEEEEe-CCeEEeecCCcc
Q psy4551 147 STPPTLELYFVDY-GDSMDMPQPSVY 171 (321)
Q Consensus 147 ~~~~~v~V~fIDy-Gn~~~V~~~~Lr 171 (321)
....+++|++++- |....||+++|.
T Consensus 32 e~~~tA~V~~l~~p~~~~~Vpv~~L~ 57 (58)
T TIGR02861 32 EQSGTARVYSLDNPGKEQDVPVNDLE 57 (58)
T ss_pred CCCCeEEEEECCCCCcEEEEEHHHcc
Confidence 3456999999995 888999998875
No 49
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=21.78 E-value=3.3e+02 Score=24.31 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=42.3
Q ss_pred cccccCCCCCEEEEEEEEEccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEE
Q psy4551 35 EKLISTSSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYR 114 (321)
Q Consensus 35 ~~~~~~~~g~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyR 114 (321)
..-+.+..|+.+.|....+-.....=+|+.+. .|-+ ..+.+...+..- + .-..+.+|+.+.+.| .++-|+
T Consensus 81 m~~L~l~~g~~V~v~~~~LPkgt~vkLqP~~~---~F~~-i~n~KavLE~~L-r---~ystLT~Gd~I~i~~--~~~~y~ 150 (176)
T PF03152_consen 81 MQNLGLQEGDIVRVEYVSLPKGTFVKLQPQSS---DFLD-ISNPKAVLERAL-R---NYSTLTKGDTISIEY--NNKTYE 150 (176)
T ss_dssp HHHHT--TTEEEEEEEEE----SEEEEEESCH---HHHC-SS-HHHHHHHHH-C---C-SEEETTSEEEEEC--TTEEEE
T ss_pred HhhcCCCCCCEEEEEEeECCCCCEEEEeECCC---cccc-ccchHHHHHhhc-c---cCceeecCCEEEEEe--CCEEEE
Confidence 34456677887666644444444445555542 1211 111222222110 0 013488999999987 789999
Q ss_pred EEEEEecCCc
Q psy4551 115 AQVMTVKPGQ 124 (321)
Q Consensus 115 a~V~~i~~~~ 124 (321)
-.|++++|.+
T Consensus 151 l~V~e~kP~~ 160 (176)
T PF03152_consen 151 LDVVEVKPEN 160 (176)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEEcCCC
Confidence 9999998764
No 50
>PF14902 DUF4494: Domain of unknown function (DUF4494)
Probab=20.65 E-value=93 Score=26.86 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEe
Q psy4551 72 DQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTV 120 (321)
Q Consensus 72 ~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i 120 (321)
..+.++|..+.+ .+. ........+.+++..-....+++||+|++.=|
T Consensus 36 ari~eem~~~~s-gef-~I~~Ik~a~~sEvf~~d~e~~D~wyK~Kv~~i 82 (140)
T PF14902_consen 36 ARIYEEMSPYIS-GEF-EITDIKRAKISEVFFSDDENDDRWYKAKVSFI 82 (140)
T ss_pred HHHHHHHhhhcc-CcE-EEEEeeEeeeeeeecCCcccCCcEEEEEEEEE
Confidence 456666666553 221 11112233444444222235678999998865
Done!