Query psy4551
Match_columns 321
No_of_seqs 167 out of 1187
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:57:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9w_A TDRD1, tudor domain-con 100.0 8.1E-42 2.8E-46 306.2 24.0 194 33-268 6-200 (201)
2 4b9x_A TDRD1, tudor domain-con 100.0 9.1E-42 3.1E-46 311.1 22.9 195 33-269 6-201 (226)
3 2wac_A CG7008-PA; unknown func 100.0 1.3E-34 4.5E-39 260.1 20.5 182 43-268 2-185 (218)
4 3ntk_A Maternal protein tudor; 100.0 7.5E-34 2.6E-38 248.3 16.4 164 44-259 2-166 (169)
5 3bdl_A Staphylococcal nuclease 100.0 2.4E-32 8.2E-37 278.9 20.8 185 41-269 360-547 (570)
6 2hqx_A P100 CO-activator tudor 100.0 1.8E-33 6E-38 258.5 8.8 185 41-269 14-201 (246)
7 2diq_A Tudor and KH domain-con 99.9 4E-25 1.4E-29 180.2 5.1 99 68-196 9-107 (110)
8 3fdr_A Tudor and KH domain-con 99.9 5.5E-24 1.9E-28 168.7 8.3 91 68-188 4-94 (94)
9 2eqk_A Tudor domain-containing 99.7 6.2E-19 2.1E-23 136.3 3.9 82 74-185 4-85 (85)
10 2d9t_A Tudor domain-containing 99.6 4.5E-16 1.5E-20 119.4 6.3 62 92-178 6-67 (78)
11 1mhn_A SurviVal motor neuron p 99.6 6.1E-16 2.1E-20 112.5 5.8 57 95-176 3-59 (59)
12 3s6w_A Tudor domain-containing 99.6 8.7E-16 3E-20 109.6 5.9 53 96-173 2-54 (54)
13 4a4f_A SurviVal of motor neuro 99.6 9E-16 3.1E-20 113.4 5.6 59 92-175 5-63 (64)
14 3pnw_C Tudor domain-containing 99.6 1.5E-15 5.3E-20 116.2 6.5 58 94-176 16-73 (77)
15 1g5v_A SurviVal motor neuron p 99.6 3E-15 1E-19 117.3 6.0 63 92-179 7-69 (88)
16 2equ_A PHD finger protein 20-l 99.2 1.8E-11 6.3E-16 92.7 5.8 59 93-179 7-65 (74)
17 2ldm_A Uncharacterized protein 98.6 1.6E-11 5.3E-16 94.4 0.0 56 94-177 5-60 (81)
18 3p8d_A Medulloblastoma antigen 98.4 4.4E-07 1.5E-11 67.2 6.0 56 94-177 5-60 (67)
19 3qii_A PHD finger protein 20; 98.3 6.1E-07 2.1E-11 69.2 5.9 57 93-177 19-75 (85)
20 2dig_A Lamin-B receptor; tudor 97.3 0.00061 2.1E-08 49.7 6.1 58 92-175 9-66 (68)
21 2l8d_A Lamin-B receptor; DNA b 97.1 0.0011 3.7E-08 48.2 6.4 56 93-174 7-62 (66)
22 4eqp_A Thermonuclease; staphyl 96.0 0.069 2.4E-06 44.5 10.9 73 184-267 31-105 (143)
23 3bdl_A Staphylococcal nuclease 96.0 0.06 2.1E-06 54.5 12.5 70 183-267 231-312 (570)
24 2eqj_A Metal-response element- 93.9 0.14 4.6E-06 37.4 5.9 52 94-172 12-63 (66)
25 3h8z_A FragIle X mental retard 93.8 0.09 3.1E-06 43.4 5.6 101 41-176 13-120 (128)
26 2eqk_A Tudor domain-containing 93.0 0.051 1.7E-06 41.7 2.6 24 121-144 23-46 (85)
27 4hcz_A PHD finger protein 1; p 92.4 0.29 9.9E-06 34.7 5.6 53 95-174 3-55 (58)
28 2e5p_A Protein PHF1, PHD finge 92.2 0.3 1E-05 35.6 5.7 53 94-173 8-60 (68)
29 2ro0_A Histone acetyltransfera 92.1 0.32 1.1E-05 37.8 6.1 54 93-171 21-76 (92)
30 2lcc_A AT-rich interactive dom 91.2 0.25 8.4E-06 37.0 4.5 61 94-177 4-68 (76)
31 2f5k_A MORF-related gene 15 is 91.1 0.17 5.9E-06 40.1 3.6 58 93-175 20-79 (102)
32 2eko_A Histone acetyltransfera 91.0 0.33 1.1E-05 37.3 5.1 56 93-171 7-67 (87)
33 1wgs_A MYST histone acetyltran 90.3 0.3 1E-05 40.4 4.6 56 94-171 11-68 (133)
34 2e5q_A PHD finger protein 19; 90.2 0.57 1.9E-05 33.6 5.3 53 94-173 6-58 (63)
35 2rnz_A Histone acetyltransfera 90.0 0.49 1.7E-05 36.9 5.3 54 93-171 23-78 (94)
36 2bud_A Males-absent on the fir 89.7 0.53 1.8E-05 36.6 5.3 60 98-178 17-78 (92)
37 1ssf_A Transformation related 89.6 0.64 2.2E-05 39.3 6.1 50 95-171 8-57 (156)
38 3dlm_A Histone-lysine N-methyl 89.1 0.33 1.1E-05 43.2 4.2 64 94-182 7-71 (213)
39 2g3r_A Tumor suppressor P53-bi 88.2 1.3 4.6E-05 35.9 6.8 62 97-191 6-70 (123)
40 2xk0_A Polycomb protein PCL; t 88.1 1.2 4.3E-05 32.5 5.9 52 94-174 14-65 (69)
41 3s6w_A Tudor domain-containing 85.9 0.46 1.6E-05 32.7 2.6 21 122-142 4-24 (54)
42 2m0o_A PHD finger protein 1; t 84.4 1.2 4E-05 33.3 4.2 51 94-171 25-75 (79)
43 2lrq_A Protein MRG15, NUA4 com 84.4 0.21 7.1E-06 38.2 0.0 58 94-176 11-70 (85)
44 2qqr_A JMJC domain-containing 83.0 1.3 4.5E-05 35.8 4.4 54 94-174 4-57 (118)
45 3fdr_A Tudor and KH domain-con 81.0 0.9 3.1E-05 34.6 2.7 22 121-142 29-50 (94)
46 3pnw_C Tudor domain-containing 80.0 1 3.5E-05 33.5 2.6 22 121-142 19-40 (77)
47 4a4f_A SurviVal of motor neuro 79.1 1.1 3.7E-05 32.0 2.4 22 121-142 10-31 (64)
48 1mhn_A SurviVal motor neuron p 78.9 1.1 3.9E-05 31.3 2.4 22 121-142 5-26 (59)
49 2d9t_A Tudor domain-containing 75.9 1.4 4.9E-05 32.7 2.4 22 121-142 11-32 (78)
50 2diq_A Tudor and KH domain-con 74.0 1.5 5.1E-05 34.4 2.1 24 121-144 34-57 (110)
51 3dlm_A Histone-lysine N-methyl 71.1 11 0.00038 33.4 7.2 65 75-171 141-205 (213)
52 1g5v_A SurviVal motor neuron p 71.0 2.2 7.6E-05 32.6 2.4 22 121-142 12-33 (88)
53 3ntk_A Maternal protein tudor; 70.5 2.3 8E-05 35.8 2.7 22 121-142 49-70 (169)
54 1ri0_A Hepatoma-derived growth 68.0 11 0.00036 29.8 5.9 65 92-177 16-80 (110)
55 4b9w_A TDRD1, tudor domain-con 67.8 2.7 9.2E-05 36.3 2.6 22 121-142 67-88 (201)
56 4b9x_A TDRD1, tudor domain-con 66.7 3 0.0001 36.8 2.7 22 121-142 67-88 (226)
57 3mea_A SAGA-associated factor 66.2 9.5 0.00032 33.0 5.6 26 95-120 116-141 (180)
58 2xdp_A Lysine-specific demethy 63.0 1.4 4.7E-05 36.0 -0.3 54 93-173 4-57 (123)
59 2xdp_A Lysine-specific demethy 54.2 17 0.00057 29.5 4.8 56 94-177 63-118 (123)
60 2qqr_A JMJC domain-containing 53.9 18 0.00062 29.1 4.9 100 41-177 17-117 (118)
61 1khc_A DNA cytosine-5 methyltr 52.2 37 0.0013 28.0 6.8 63 93-175 9-71 (147)
62 3ask_A E3 ubiquitin-protein li 49.8 20 0.00069 32.0 5.0 64 96-175 3-68 (226)
63 3mp6_A MBP, SGF29, maltose-bin 49.7 21 0.00071 34.9 5.6 80 71-175 362-451 (522)
64 2daq_A WHSC1L1 protein, isofor 49.4 20 0.00069 27.8 4.5 69 94-178 7-75 (110)
65 3qby_A Hepatoma-derived growth 47.9 19 0.00066 27.4 4.1 63 94-177 4-66 (94)
66 3h8z_A FragIle X mental retard 47.5 31 0.0011 28.0 5.5 49 100-176 6-55 (128)
67 3m9p_A MALE-specific lethal 3 46.5 54 0.0018 26.0 6.5 61 93-175 17-86 (110)
68 2wac_A CG7008-PA; unknown func 43.9 12 0.0004 32.1 2.5 22 121-142 53-74 (218)
69 3pmi_A PWWP domain-containing 42.6 21 0.00071 29.2 3.6 40 94-159 3-42 (134)
70 3mp6_A MBP, SGF29, maltose-bin 41.7 24 0.00083 34.3 4.7 75 41-121 403-483 (522)
71 2hqx_A P100 CO-activator tudor 41.2 13 0.00045 32.7 2.4 21 121-142 67-87 (246)
72 3db3_A E3 ubiquitin-protein li 40.4 46 0.0016 28.1 5.5 72 95-174 10-84 (161)
73 3llr_A DNA (cytosine-5)-methyl 40.3 27 0.00094 29.2 4.1 68 93-180 14-81 (154)
74 2a2p_A Selenoprotein M, SELM p 39.2 52 0.0018 26.8 5.5 56 238-293 55-120 (129)
75 3m9q_A Protein MALE-specific l 37.1 95 0.0032 24.1 6.5 66 93-176 17-87 (101)
76 2k3y_A Chromatin modification- 33.4 42 0.0014 27.6 4.1 26 94-121 8-33 (136)
77 2khf_A PLNJ; anti-microbial, b 32.8 10 0.00035 21.8 0.2 8 312-319 1-8 (26)
78 4fu6_A PC4 and SFRS1-interacti 32.6 36 0.0012 28.0 3.7 65 93-178 20-84 (153)
79 3mea_A SAGA-associated factor 31.6 88 0.003 26.8 6.0 59 93-176 42-105 (180)
80 1h3z_A Hypothetical 62.8 kDa p 31.5 48 0.0016 25.6 4.1 68 94-176 5-73 (109)
81 1g2b_A Spectrin alpha chain; c 30.6 54 0.0018 22.1 3.8 23 95-117 39-61 (62)
82 3pfs_A Bromodomain and PHD fin 29.1 1E+02 0.0036 25.8 5.9 73 94-175 35-121 (158)
83 2lj0_A Sorbin and SH3 domain-c 28.1 63 0.0021 22.5 3.8 25 94-118 23-47 (65)
84 1tg0_A BBC1 protein, myosin ta 26.2 76 0.0026 21.7 4.0 25 95-119 25-49 (68)
85 1zuy_A Myosin-5 isoform; SH3 d 25.3 79 0.0027 20.6 3.8 25 94-118 18-42 (58)
86 2gfu_A DNA mismatch repair pro 25.2 76 0.0026 25.4 4.3 69 93-178 20-89 (134)
87 2bz8_A SH3-domain kinase bindi 25.0 78 0.0027 20.8 3.8 24 94-117 18-41 (58)
88 2oaw_A Spectrin alpha chain, b 24.9 86 0.0029 21.0 4.0 26 94-119 18-43 (65)
89 2l89_A PWWP domain-containing 24.6 60 0.002 25.2 3.4 65 94-176 4-70 (108)
90 1y0m_A 1-phosphatidylinositol- 24.6 81 0.0028 21.0 3.8 23 95-117 21-43 (61)
91 1jo8_A ABP1P, actin binding pr 24.4 83 0.0028 20.7 3.8 24 95-118 18-41 (58)
92 1y96_A Gemin6, SIP2, GEM-assoc 23.6 2.4E+02 0.0081 21.2 6.7 46 97-143 15-62 (86)
93 2vwf_A Growth factor receptor- 23.3 90 0.0031 20.4 3.8 24 94-117 19-42 (58)
94 1cka_A C-CRK N-terminal SH3 do 23.3 82 0.0028 20.6 3.6 22 95-116 19-40 (57)
95 1uj0_A Signal transducing adap 22.9 90 0.0031 20.9 3.8 25 94-118 22-46 (62)
96 1b07_A Protein (proto-oncogene 22.6 82 0.0028 21.5 3.6 22 95-116 21-42 (65)
97 1zx6_A YPR154WP; SH3 domain, p 22.4 95 0.0032 20.4 3.8 24 94-117 19-42 (58)
98 1sem_A SEM-5; SRC-homology 3 ( 22.3 97 0.0033 20.2 3.8 23 95-117 20-42 (58)
99 1gl5_A Tyrosine-protein kinase 22.1 85 0.0029 21.4 3.6 22 95-116 20-41 (67)
100 2fpe_A C-JUN-amino-terminal ki 21.9 89 0.0031 20.8 3.6 23 95-117 21-43 (62)
101 2ew3_A SH3-containing GRB2-lik 21.8 95 0.0032 21.5 3.8 24 94-117 20-43 (68)
102 1w70_A Neutrophil cytosol fact 21.3 1E+02 0.0035 20.4 3.8 24 94-117 21-44 (60)
103 1uti_A GRB2-related adaptor pr 21.2 1.1E+02 0.0036 20.1 3.8 24 94-117 18-41 (58)
104 2pqh_A Spectrin alpha chain, b 21.0 97 0.0033 22.0 3.8 23 95-117 20-42 (80)
105 3ulr_B SRC substrate cortactin 20.9 1E+02 0.0035 20.6 3.8 24 94-117 26-49 (65)
106 2fpf_A C-JUN-amino-terminal ki 20.9 92 0.0032 21.4 3.6 23 95-117 24-46 (71)
107 1ruw_A Myosin-3 isoform, MYO3; 20.9 1E+02 0.0035 21.0 3.8 25 94-118 20-44 (69)
108 2drm_A Acanthamoeba myosin IB; 20.8 1.1E+02 0.0038 19.9 3.8 24 94-117 20-43 (58)
109 3ngp_A Spectrin alpha chain, b 20.6 1.1E+02 0.0037 20.2 3.8 24 94-117 23-46 (62)
110 2g6f_X RHO guanine nucleotide 20.6 1.1E+02 0.0038 20.1 3.8 23 95-117 22-44 (59)
111 2bzy_A CRK-like protein, CRKL 20.6 1E+02 0.0036 20.9 3.8 23 95-117 21-43 (67)
112 2j05_A RAS GTPase-activating p 20.5 98 0.0033 20.9 3.6 24 95-118 24-47 (65)
113 4esr_A Jouberin; AHI-1, AHI1, 20.5 1E+02 0.0036 20.9 3.8 24 94-117 23-46 (69)
114 1x69_A Cortactin isoform A; SH 20.5 1E+02 0.0035 21.8 3.8 24 94-117 34-57 (79)
115 2djq_A SH3 domain containing r 20.4 1.1E+02 0.0038 20.8 3.9 24 94-117 24-47 (68)
116 2eyx_A V-CRK sarcoma virus CT1 20.3 92 0.0032 21.3 3.4 23 95-117 26-48 (67)
117 2eqm_A PHD finger protein 20-l 20.0 2.6E+02 0.0088 20.8 6.1 57 92-174 16-76 (88)
118 3c0c_A Endophilin-A2; endocyto 20.0 1.1E+02 0.0036 21.3 3.8 23 95-117 31-53 (73)
No 1
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=100.00 E-value=8.1e-42 Score=306.18 Aligned_cols=194 Identities=27% Similarity=0.416 Sum_probs=173.3
Q ss_pred cccccccCCCCCEEEEEEEEEccCCeEEEEEcCCc-hhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCe
Q psy4551 33 RAEKLISTSSDGSLTVFMSAVANPDRFWVQIMNDR-AIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQK 111 (321)
Q Consensus 33 ~~~~~~~~~~g~~~~V~Vt~V~sp~~Fyvq~~~~~-~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~ 111 (321)
-.++.+.++.|+.++|+||||.||++||+|+.+.+ ...+++|+++|+++|.+.. +....++.|++|+|+|+.||.
T Consensus 6 l~~~~~~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~----~~~~~~~~G~~c~a~~~~d~~ 81 (201)
T 4b9w_A 6 LEWTWVEFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKP----PNGFKAEIGRPCCAFFSGDGN 81 (201)
T ss_dssp CCCCBCCCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSS----CCCCCCCTTCEEEEEETTTTE
T ss_pred ceeEEEEcCCCCEEEEEEEEEeCCCEEEEEECCCchHHHHHHHHHHHHHHHhcCC----CCCCCCCCCCEEEEEECCCCe
Confidence 46788999999999999999999999999998754 3479999999999998653 234578999999999999999
Q ss_pred EEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecc
Q psy4551 112 WYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLAN 191 (321)
Q Consensus 112 WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~Lag 191 (321)
||||+|+++.++ ..+.|+||||||++.|+.++||+|+++|..+|+||++|+|+|
T Consensus 82 wyRa~V~~~~~~--------------------------~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~ 135 (201)
T 4b9w_A 82 WYRALVKEILPS--------------------------GNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVD 135 (201)
T ss_dssp EEEEEEEEECTT--------------------------SCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESS
T ss_pred EEEEEEEEECCC--------------------------CeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcC
Confidence 999999997432 269999999999999999999999999999999999999999
Q ss_pred eeeCCCCChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCccccHHHHHHHcCCcccc
Q psy4551 192 VRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSS 268 (321)
Q Consensus 192 V~P~~~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~~sIn~~LI~~GlA~~~ 268 (321)
|+|.+..|+.+|+++|++++.+ +.+.++|+++.+ +.+.|.|+|.++..+++||+.||++|||..+
T Consensus 136 v~p~~~~w~~ea~~~f~~l~~~---k~l~~~V~~~~~---------~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~kc 200 (201)
T 4b9w_A 136 IQPPNKHWTKEATARFQACVVG---LKLQARVVEITA---------NGVGVELTDLSTPYPKIISDVLIREQLVLRC 200 (201)
T ss_dssp EECSSSSCCHHHHHHHHHHHTT---CCEEEEEEEEET---------TEEEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred EEcCCCCCCHHHHHHHHHHHCC---CEEEEEEEEEeC---------CEEEEEEEECCCCCccchHHHHHHCcCeecc
Confidence 9999999999999999999986 899999988653 3468999999877889999999999999764
No 2
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=100.00 E-value=9.1e-42 Score=311.14 Aligned_cols=195 Identities=27% Similarity=0.412 Sum_probs=173.3
Q ss_pred cccccccCCCCCEEEEEEEEEccCCeEEEEEcCCc-hhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCe
Q psy4551 33 RAEKLISTSSDGSLTVFMSAVANPDRFWVQIMNDR-AIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQK 111 (321)
Q Consensus 33 ~~~~~~~~~~g~~~~V~Vt~V~sp~~Fyvq~~~~~-~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~ 111 (321)
-.++.+.++.|+.++|+||||.||++||||+.+.+ ...++.|+++|+++|.+.. +....+++|++|+|+|+.||.
T Consensus 6 l~~~~~~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~----~~~~~~~~G~~c~a~~~~d~~ 81 (226)
T 4b9x_A 6 LEWTWVEFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKP----PNGFKAEIGRPCCAFFSGDGN 81 (226)
T ss_dssp CCCCBCCCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSC----C--CCCCTTCEEEEEETTTTE
T ss_pred eeeEEEEcCCCCEEEEEEEEEeCCCEEEEEEcCCchHHHHHHHHHHHHHHHhcCC----CCCCCCCCCCEEEEEECCCCe
Confidence 46888999999999999999999999999998754 3478999999999997643 234578999999999999999
Q ss_pred EEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecc
Q psy4551 112 WYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLAN 191 (321)
Q Consensus 112 WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~Lag 191 (321)
||||+|+++.++ ..+.|+||||||++.|+.++||+|+++|..+|+||++|+|+|
T Consensus 82 WyRa~V~~~~~~--------------------------~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~ 135 (226)
T 4b9x_A 82 WYRALVKEILPS--------------------------GNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVD 135 (226)
T ss_dssp EEEEEEEEECSS--------------------------SEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESS
T ss_pred EEEEEEEEECCC--------------------------CeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEec
Confidence 999999997432 379999999999999999999999999999999999999999
Q ss_pred eeeCCCCChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCccccHHHHHHHcCCccccC
Q psy4551 192 VRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSK 269 (321)
Q Consensus 192 V~P~~~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~~sIn~~LI~~GlA~~~~ 269 (321)
|+|.+..|+.+|+++|++++.+ +.+.++|+++.+ +.+.|.|||.++..+++||+.||++|||..+.
T Consensus 136 v~p~~~~w~~ea~~~f~~l~~~---k~l~~~V~~~~~---------~~~~V~L~d~~~~~~~~I~~~Lv~~gla~~~~ 201 (226)
T 4b9x_A 136 IQPPNKHWTKEATARFQACVVG---LKLQARVVEITA---------NGVGVELTDLSTPYPKIISDVLIREQLVLRCG 201 (226)
T ss_dssp EECSSSSCCHHHHHHHHHHHTT---CCEEEEEEEECS---------SCEEEEEEECSSSSCEEHHHHHHHTTSSEECC
T ss_pred EECCCCCCCHHHHHHHHHHHCC---CeEEEEEEEEeC---------CeEEEEEEECCCCCCccHHHHHHHCCCccccC
Confidence 9999999999999999999986 899999988653 34689999998878899999999999998754
No 3
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-34 Score=260.12 Aligned_cols=182 Identities=23% Similarity=0.357 Sum_probs=156.4
Q ss_pred CCEEEEEEEEEccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEecC
Q psy4551 43 DGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKP 122 (321)
Q Consensus 43 g~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~ 122 (321)
.+++.|+||||.||++||+|..+... .+++|+++|+++|++... .+....++.|++|+|+|+.|+.||||+|+++.+
T Consensus 2 ~~~~~V~Vt~v~~p~~f~vq~~~~~~-~l~~l~~~l~~~~~~~~~--~~~~~~~~~g~~c~a~~~~d~~wyRa~V~~v~~ 78 (218)
T 2wac_A 2 VNYENVIVTEITETLTFFAQSVESGS-KLESLMSKLHADFQSNPP--IAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQG 78 (218)
T ss_dssp CCCEEEEEEEECTTSEEEEEEGGGHH-HHHHHHHHHHHHHHHSCC--CTTSCCCCTTCEEEEECTTTCCEEEEEEEEEET
T ss_pred CceEEEEEEEEcCCCEEEEEECCCHH-HHHHHHHHHHHHHhhCCC--CCCCccCCcCCEEEEEECCCCeEEEEEEEEecC
Confidence 35789999999999999999998543 699999999999886422 122356899999999998899999999999732
Q ss_pred CceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecceeeC-CCCChH
Q psy4551 123 GQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPV-GDVWSE 201 (321)
Q Consensus 123 ~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~LagV~P~-~~~Ws~ 201 (321)
..+.|+||||||++.|+.++||+||++|..+|+||++|+|+||.|+ +..|+.
T Consensus 79 ---------------------------~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~~~~w~~ 131 (218)
T 2wac_A 79 ---------------------------SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPTDNEDKE 131 (218)
T ss_dssp ---------------------------TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCSSHHHHH
T ss_pred ---------------------------CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCCCcchHH
Confidence 3799999999999999999999999999999999999999999965 467999
Q ss_pred HHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCc-cEEEEEeCCCCccccHHHHHHHcCCcccc
Q psy4551 202 EAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPL-PCVSLFDTSGEQDVNISQELISRGFAVSS 268 (321)
Q Consensus 202 ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~-~~V~L~d~~~~~~~sIn~~LI~~GlA~~~ 268 (321)
+|+++|++++.+ +.+.++|.... .+. +.|.|++.++ ..+||+.||++|||...
T Consensus 132 eA~~~l~~lv~~---k~v~~~v~~~d---------~g~~~~V~L~~~~~--~~~in~~Lv~~G~A~~~ 185 (218)
T 2wac_A 132 EALRAFSEDVLN---HKVQLNVELKV---------TGSPNLATLRDPTT--KVDFGKQLVAEGLVLAE 185 (218)
T ss_dssp HHHHHHHHHHBT---CEEEEEEEECC---------TTSCEEEEEECTTT--CCBHHHHHHHTTSSEEC
T ss_pred HHHHHHHHHhcC---CEEEEEEEEEc---------CCceEEEEEEeCCC--CccHHHHHHHCCCcccc
Confidence 999999999986 88999886532 245 7899998642 56999999999999984
No 4
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=100.00 E-value=7.5e-34 Score=248.32 Aligned_cols=164 Identities=21% Similarity=0.290 Sum_probs=140.4
Q ss_pred CEEEEEEEEEccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEecCC
Q psy4551 44 GSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPG 123 (321)
Q Consensus 44 ~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~ 123 (321)
+.++|+||||.||++||+|..+ ....+++|+++|+++++.. +....++.|++|+|+|+.||.||||+|+++.++
T Consensus 2 e~~~V~Vt~v~~p~~F~vq~~~-~~~~L~~L~~~l~~~~~~~-----p~~~~~~~G~~c~A~~~~d~~wyRa~I~~~~~~ 75 (169)
T 3ntk_A 2 ELHNCVVVQFDGPMSFYVQMES-DVPALEQMTDKLLDAEQDL-----PAFSDLKEGALCVAQFPEDEVFYRAQIRKVLDD 75 (169)
T ss_dssp CCEEEEEEEEEETTEEEEEEGG-GHHHHHHHHHHHHHHGGGC-----CBCCCCCTTCEEEEEETTTTEEEEEEEEEECST
T ss_pred cceEEEEEEEeCCCEEEEEECC-CHHHHHHHHHHHHHHHhcC-----CCCCCCCCCCEEEEEECCCCcEEEEEEEEECCC
Confidence 4679999999999999999986 3457999999999987532 234579999999999988999999999997432
Q ss_pred ceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecceeeCCCCChHHH
Q psy4551 124 QIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEA 203 (321)
Q Consensus 124 ~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~LagV~P~~~~Ws~ea 203 (321)
..+.|+||||||++. .++||+||++|..+|+||++|+|+||+|.+. +.+|
T Consensus 76 --------------------------~~~~V~fvDyGn~~~--v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~--~~ea 125 (169)
T 3ntk_A 76 --------------------------GKCEVHFIDFGNNAV--TQQFRQLPEELAKPARYSRHCELDASTISKC--DAAL 125 (169)
T ss_dssp --------------------------TCEEEEETTTTEEEE--ESCEECCCHHHHSSCCSSEEEEECGGGSCHH--HHHH
T ss_pred --------------------------CEEEEEEEecCCeEE--hhhhhccCHHHhhCCceeEEEEECCcCCCCC--hHHH
Confidence 279999999999999 4899999999999999999999999998754 8999
Q ss_pred HHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccE-EEEEeCCCCccccHHHHH
Q psy4551 204 ISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPC-VSLFDTSGEQDVNISQEL 259 (321)
Q Consensus 204 ~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~-V~L~d~~~~~~~sIn~~L 259 (321)
++.|++++.+ +.+.++|.... ++.++ |.||+.. .+||+.|
T Consensus 126 ~~~f~~l~~~---k~l~~~V~~~~---------~~~~~~V~L~~~~----~~in~~L 166 (169)
T 3ntk_A 126 LQSFIDTRFS---ETFQVEILATK---------GTGTHVVRLFYQS----KNISEKL 166 (169)
T ss_dssp HHHHHHTTTT---SEEEEEEEEEC---------TTSCEEEEEEETT----EEHHHHC
T ss_pred HHHHHHHhCC---CeEEEEEEEec---------CCCCEEEEEEECC----CCHHHHh
Confidence 9999999986 89999997643 23456 9999875 3899986
No 5
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=278.92 Aligned_cols=185 Identities=22% Similarity=0.361 Sum_probs=160.8
Q ss_pred CCCCEEEEEEEEEccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEe
Q psy4551 41 SSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTV 120 (321)
Q Consensus 41 ~~g~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i 120 (321)
..++.+.|+||+|.+|++||||+.+.. ..+++|+++|+++|++... .+....+..|++|+|+|+ ||.||||+|+++
T Consensus 360 ~~~~~~~V~Vt~V~sp~~Fyvq~~~~~-~~l~~l~~~l~~~~~~~~~--l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~v 435 (570)
T 3bdl_A 360 RSASYKPVFVTEITDDLHFYVQDVETG-TQLEKLMENMRNDIASHPP--VEGSYAPRRGEFCIAKFV-DGEWYRARVEKV 435 (570)
T ss_dssp CCCCCEEEEEEEECTTSEEEEEEGGGH-HHHHHHHHHHHHHHHHSCC--CTTCCCCCTTCEEEEECT-TSCEEEEEEEEE
T ss_pred CCCcEEEEEEEEEECCCeEEEEECCcH-HHHHHHHHHHHHHHhcCCC--CCCCcCCCcCCEEEEEEC-CCCEEEEEEEEE
Confidence 567889999999999999999999853 4699999999999986432 122367999999999997 999999999997
Q ss_pred cCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccC--CceEEEEEecceeeC-CC
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGL--RFQAIECSLANVRPV-GD 197 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~l--P~qAi~C~LagV~P~-~~ 197 (321)
.+ ...+.|+||||||++.|+.++||+|+++|..+ |+||++|+|+||+|. +.
T Consensus 436 ~~--------------------------~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~~~ 489 (570)
T 3bdl_A 436 ES--------------------------PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDD 489 (570)
T ss_dssp EE--------------------------TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCSSH
T ss_pred cC--------------------------CCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCCCC
Confidence 42 13799999999999999999999999999866 999999999999965 57
Q ss_pred CChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCccccHHHHHHHcCCccccC
Q psy4551 198 VWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSK 269 (321)
Q Consensus 198 ~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~~sIn~~LI~~GlA~~~~ 269 (321)
.|+.+++++|++++.+ +.+.++|.... ++.+.|.||+.++ ..+||+.||++|||...+
T Consensus 490 ~w~~ea~~~f~~lv~~---k~l~~~V~~~~---------~~~~~V~L~~~~~--~~sIn~~Lv~~G~A~~~~ 547 (570)
T 3bdl_A 490 DARTDAVDSVVRDIQN---TQCLLNVEHLS---------AGCPHVTLQFADS--KGDVGLGLVKEGLVMVEV 547 (570)
T ss_dssp HHHHHHHHHHHHHHTT---EEEEEEEEECC---------SSSCEEEEEETTT--CCBHHHHHHHTTSSEECC
T ss_pred CCcHHHHHHHHHHhCC---CEEEEEEEEEe---------CCcEEEEEEECCC--CccHHHHHHHCCCeEcch
Confidence 8999999999999986 89999997643 2568999999853 679999999999999964
No 6
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=100.00 E-value=1.8e-33 Score=258.50 Aligned_cols=185 Identities=22% Similarity=0.345 Sum_probs=75.4
Q ss_pred CCCCEEEEEEEEEccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEe
Q psy4551 41 SSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTV 120 (321)
Q Consensus 41 ~~g~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i 120 (321)
+.++.+.|+||||.+|++||||+.+.. ..+++|+++|+++|++... ......+..|++|+|+|+ ||.||||+|+++
T Consensus 14 ~~~~~~~V~Vt~v~~p~~f~vq~~~~~-~~l~~l~~~l~~~~~~~~~--~~~~~~~~~G~~c~a~~~-d~~wyRa~V~~~ 89 (246)
T 2hqx_A 14 RSASYKPVFVTEITDDLHFYVQDVETG-TQFQKLMENMRNDIASHPP--VEGSYAPRRGEFCIAKFV-DGEWYRARVEKV 89 (246)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHSCC--CTTTCCCCTTCEEEEECT-TSCEEEEEEEEE
T ss_pred CCCCEEEEEEEEECCCCEEEEEECCcH-HHHHHHHHHHHHHHhhCCC--CCCCCCCCCCCEEEEEcC-CCCEEEEEEEEE
Confidence 678999999999999999999999853 4799999999999986432 123467899999999997 999999999997
Q ss_pred cCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccc--cCCceEEEEEecceeeC-CC
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFL--GLRFQAIECSLANVRPV-GD 197 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~--~lP~qAi~C~LagV~P~-~~ 197 (321)
.++ ..+.|+||||||++.|+.++||+|+++|. .+|+||++|+|+||.|+ +.
T Consensus 90 ~~~--------------------------~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~~ 143 (246)
T 2hqx_A 90 ESP--------------------------AKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDD 143 (246)
T ss_dssp EET--------------------------TEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC--------------
T ss_pred cCC--------------------------CeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCCCc
Confidence 421 37999999999999999999999999998 78999999999999965 56
Q ss_pred CChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCccccHHHHHHHcCCccccC
Q psy4551 198 VWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSK 269 (321)
Q Consensus 198 ~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~~sIn~~LI~~GlA~~~~ 269 (321)
.|..+|+.+|.+++.+ +.+.++|.... .+.+.|.|++.. ...+||+.||++|||...+
T Consensus 144 ~~~~eA~~~l~~lv~~---k~v~~~v~~~d---------~g~~~v~L~~~~--~~~~In~~LV~~GlA~~~~ 201 (246)
T 2hqx_A 144 DARTDAVDSVVRDIQN---TQCLLNVEHLS---------AGCPHVTLQFAD--SKGDVGLGLVKEGLVMVEV 201 (246)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cchHHHHHHHHHHhcC---CEEEEEEEEec---------CCeEEEEEEeCC--CCccHHHHHHHCCCEEecc
Confidence 7999999999999986 77888775432 234578888743 3569999999999999854
No 7
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=99.91 E-value=4e-25 Score=180.19 Aligned_cols=99 Identities=42% Similarity=0.682 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCC
Q psy4551 68 AIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDS 147 (321)
Q Consensus 68 ~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~ 147 (321)
..++++|+++|+++|++.. +....+++|++|+|+|+.|++||||+|+++.++
T Consensus 9 ~~~l~~L~~~m~~~y~~~~----~~~~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~------------------------ 60 (110)
T 2diq_A 9 SLQLDKLVNEMTQHYENSV----PEDLTVHVGDIVAAPLPTNGSWYRARVLGTLEN------------------------ 60 (110)
T ss_dssp CHHHHHHHHHHHHHHTTSC----CCCCCCCTTCEEEECCTTTCSCEEEEECCCCSS------------------------
T ss_pred HHHHHHHHHHHHHHHccCC----CCCCCCCCCCEEEEEECCCCeEEEEEEEEECCC------------------------
Confidence 4579999999999999753 234678999999999988999999999997421
Q ss_pred CCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecceeeCC
Q psy4551 148 TPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVG 196 (321)
Q Consensus 148 ~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~LagV~P~~ 196 (321)
..+.|+||||||++.|+.++||+|+++|..+|+||++|+|+||+|.+
T Consensus 61 --~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~lP~qA~~c~L~~v~p~~ 107 (110)
T 2diq_A 61 --GNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIASGP 107 (110)
T ss_dssp --SCEEEEETTTCCEEEECGGGCEECCHHHHSSCCSSCCSCSSCSCCSC
T ss_pred --CeEEEEEEeCCCeEEEehHHhhcCcHHHhCCCcceEEEEECCeEECC
Confidence 37999999999999999999999999999999999999999999974
No 8
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=99.90 E-value=5.5e-24 Score=168.68 Aligned_cols=91 Identities=44% Similarity=0.724 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCC
Q psy4551 68 AIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDS 147 (321)
Q Consensus 68 ~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~ 147 (321)
+.+|++|+++|+++|++.. +....+++|++|+|+|+.||.||||+|+++.++
T Consensus 4 s~~Le~Lm~~m~~~y~~~~----~~~~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~------------------------ 55 (94)
T 3fdr_A 4 SLQLDKLVNEMTQHYENSV----PEDLTVHVGDIVAAPLPTNGSWYRARVLGTLEN------------------------ 55 (94)
T ss_dssp -CHHHHHHHHHHHHHTTCC----CCCCCCCTTCEEEEEETTTTEEEEEEEEEECTT------------------------
T ss_pred HHHHHHHHHHHHHHHhcCC----CCCCCCCCCCEEEEEECCCCeEEEEEEEEECCC------------------------
Confidence 3479999999999999763 234679999999999999999999999997421
Q ss_pred CCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEE
Q psy4551 148 TPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECS 188 (321)
Q Consensus 148 ~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~ 188 (321)
..+.|+||||||.+.|+.++||+|+++|..+|+||++|+
T Consensus 56 --~~~~V~fvDyGn~e~v~~~~lr~l~~~f~~lP~qA~~Cs 94 (94)
T 3fdr_A 56 --GNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 94 (94)
T ss_dssp --SCEEEEETTTCCEEEECGGGCEECCGGGGCSCCCCCCC-
T ss_pred --CeEEEEEEcCCCeEEEEHHHhhhcCHHHhcCCcceEEeC
Confidence 379999999999999999999999999999999999996
No 9
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.2e-19 Score=136.29 Aligned_cols=82 Identities=12% Similarity=0.191 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEE
Q psy4551 74 LVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLE 153 (321)
Q Consensus 74 L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~ 153 (321)
|++.|.+++.... +.+..++.|++|||+|+.+++||||+|+++.++ .+++
T Consensus 4 L~e~M~~~~~~s~----~~~~~~k~g~~vaak~~d~n~WyRakV~~v~~~--------------------------~~ve 53 (85)
T 2eqk_A 4 GSSGMIAAYENSK----WEPVKWENDMHCAVKIQDKNQWRRGQIIRMVTD--------------------------TLVE 53 (85)
T ss_dssp CCCCHHHHHHHSC----CCCCCCCSSCEEEEECSSSCCEEEEEEEEECSS--------------------------SEEE
T ss_pred HHHHHHHHhccCC----CcccCccCCCEEEEEeCCCCeEEEEEEEEecCC--------------------------CeEE
Confidence 4556777777433 346789999999999998889999999997432 3799
Q ss_pred EEEEEeCCeEEeecCCccccCcccccCCceEE
Q psy4551 154 LYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAI 185 (321)
Q Consensus 154 V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi 185 (321)
|+|+||||+++|+.++||+|+++|..++.+|+
T Consensus 54 Vl~~DyGn~~~V~~~~LR~L~~~l~~~~~~~~ 85 (85)
T 2eqk_A 54 VLLYDVGVELVVNVDCLRKLEENLKTMGRLSL 85 (85)
T ss_dssp EECTTTCCEEEEETTTEEECCHHHHTCSSCCC
T ss_pred EEEEccCCEEEEEccccccCCHHHhhhhhccC
Confidence 99999999999999999999999999988763
No 10
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=99.62 E-value=4.5e-16 Score=119.43 Aligned_cols=62 Identities=26% Similarity=0.338 Sum_probs=54.8
Q ss_pred ccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc
Q psy4551 92 RLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 92 ~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr 171 (321)
+...+++|++|+|+|+.|++||||+|+++.+. ...+.|+||||||.+.|+.++||
T Consensus 6 ~~~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~-------------------------~~~~~V~fiDYGN~e~V~~~~Lr 60 (78)
T 2d9t_A 6 SGKVWKPGDECFALYWEDNKFYRAEVEALHSS-------------------------GMTAVVKFTDYGNYEEVLLSNIK 60 (78)
T ss_dssp CCCCCCTTCEEEEECTTTCCEEEEEEEEECSS-------------------------SSEEEEEETTTTEEEEEEGGGEE
T ss_pred CccCCCcCCEEEEEECCCCCEEEEEEEEEeCC-------------------------CCEEEEEEEcCCCeEEEcHHHeE
Confidence 45679999999999988999999999997421 24799999999999999999999
Q ss_pred ccCcccc
Q psy4551 172 QLNPTFL 178 (321)
Q Consensus 172 ~L~~~f~ 178 (321)
+|++++.
T Consensus 61 ~l~~~ll 67 (78)
T 2d9t_A 61 PVQTEAW 67 (78)
T ss_dssp ECCCCCC
T ss_pred eCCHHHh
Confidence 9998875
No 11
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=99.61 E-value=6.1e-16 Score=112.46 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=50.5
Q ss_pred cCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccC
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLN 174 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~ 174 (321)
.++.|+.|+|+|+.||+||||+|+++.++ ...+.|+|+||||.+.|+.++||+||
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~-------------------------~~~~~V~f~DYGn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFK-------------------------RETCVVVYTGYGNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETT-------------------------TTEEEEEETTTTEEEEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCC-------------------------CCEEEEEEEcCCCEEEEcHHHeeCCC
Confidence 47899999999998999999999997431 24899999999999999999999998
Q ss_pred cc
Q psy4551 175 PT 176 (321)
Q Consensus 175 ~~ 176 (321)
++
T Consensus 58 ~~ 59 (59)
T 1mhn_A 58 CE 59 (59)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 12
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=99.60 E-value=8.7e-16 Score=109.61 Aligned_cols=53 Identities=30% Similarity=0.482 Sum_probs=46.6
Q ss_pred CCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 96 VKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 96 ~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
+++|++|+|+|+.||+||||+|+++.+ +...+.|+|+||||.+.|+.++||+|
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~-------------------------~~~~~~V~fvDYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHS-------------------------SGMTAVVKFIDYGNYEEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC---------------------------CCSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeC-------------------------CCCEEEEEEEccCCeEEEeHHHEEEC
Confidence 678999999999999999999999742 12479999999999999999999986
No 13
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=99.59 E-value=9e-16 Score=113.41 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=52.3
Q ss_pred ccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc
Q psy4551 92 RLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 92 ~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr 171 (321)
+...+++|+.|+|+|+.||+||||+|+++.+. ...+.|+|+||||.+.|+.++||
T Consensus 5 ~~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~-------------------------~~~~~V~fvdYGn~e~V~~~~Lr 59 (64)
T 4a4f_A 5 PTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEE-------------------------NGTAAITFAGYGNAEVTPLLNLK 59 (64)
T ss_dssp CSSCCCTTCEEEEECTTTSSEEEEEEEEEETT-------------------------TTEEEEEETTTTEEEEEEGGGEE
T ss_pred cCCCCCCCCEEEEEECCCCCEEEEEEEEEcCC-------------------------CCEEEEEEEecCCEEEEeHHHcE
Confidence 45679999999999999999999999998431 24799999999999999999999
Q ss_pred ccCc
Q psy4551 172 QLNP 175 (321)
Q Consensus 172 ~L~~ 175 (321)
+|++
T Consensus 60 pl~~ 63 (64)
T 4a4f_A 60 PVEE 63 (64)
T ss_dssp CCSC
T ss_pred eCCC
Confidence 9975
No 14
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=116.20 Aligned_cols=58 Identities=28% Similarity=0.428 Sum_probs=49.5
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
..+++|++|+|+|+.||.||||+|+++.+. ...+.|+||||||.+.|+.++||+|
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~-------------------------~~~~~V~fvDYGN~e~V~~~~Lr~l 70 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHSS-------------------------GMTAVVKFIDYGNYEEVLLSNIKPI 70 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECTT-------------------------SSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeCC-------------------------CCEEEEEEEcCCCeEEEeHHHeEEC
Confidence 469999999999999999999999997421 2479999999999999999999999
Q ss_pred Ccc
Q psy4551 174 NPT 176 (321)
Q Consensus 174 ~~~ 176 (321)
|.+
T Consensus 71 ~~~ 73 (77)
T 3pnw_C 71 QTE 73 (77)
T ss_dssp ---
T ss_pred Chh
Confidence 875
No 15
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=99.56 E-value=3e-15 Score=117.32 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=50.9
Q ss_pred ccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc
Q psy4551 92 RLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 92 ~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr 171 (321)
+...+++|+.|+|+|+.||+||||+|.++.+. ...+.|+|+||||.+.|++++||
T Consensus 7 ~~~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~-------------------------~~~~~V~fiDYGN~E~V~~~~Lr 61 (88)
T 1g5v_A 7 SLQQWKVGDKCSAIWSEDGCIYPATIASIDFK-------------------------RETCVVVYTGYGNREEQNLSDLL 61 (88)
T ss_dssp --CCCCSSCEEEEECTTTCCEEEEEEEEEETT-------------------------TTEEEEEETTTCCEEEEEGGGCB
T ss_pred ccCCCCCCCEEEEEECCCCCEEEEEEEEecCC-------------------------CCEEEEEEecCCCEEEEcHHHcc
Confidence 34579999999999999999999999998431 24799999999999999999999
Q ss_pred ccCccccc
Q psy4551 172 QLNPTFLG 179 (321)
Q Consensus 172 ~L~~~f~~ 179 (321)
+++..|..
T Consensus 62 p~~~~~~~ 69 (88)
T 1g5v_A 62 SPICEVAN 69 (88)
T ss_dssp CCC-----
T ss_pred cCChhhcc
Confidence 99988854
No 16
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.8e-11 Score=92.73 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=52.0
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
...+++|+.|+|+|+ ||.||||+|.++.++ .++.|+|+|| |.+.|+.++|++
T Consensus 7 ~~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~--------------------------~~~~V~f~Dy-n~e~v~~~~lrp 58 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DCRYYPAKIEAINKE--------------------------GTFTVQFYDG-VIRCLKRMHIKA 58 (74)
T ss_dssp CCCCCTTCEEEEECS-SSSEEEEEEEEESTT--------------------------SSEEEEETTS-CEEEECGGGEEC
T ss_pred CCCCCCCCEEEEECC-CCCEEEEEEEEECCC--------------------------CEEEEEEecC-CeEEecHHHCee
Confidence 467999999999998 999999999997421 3799999999 999999999999
Q ss_pred cCccccc
Q psy4551 173 LNPTFLG 179 (321)
Q Consensus 173 L~~~f~~ 179 (321)
||+.+..
T Consensus 59 lp~~~k~ 65 (74)
T 2equ_A 59 MPEDAKG 65 (74)
T ss_dssp CCGGGTC
T ss_pred CChhHhh
Confidence 9987653
No 17
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=98.64 E-value=1.6e-11 Score=94.42 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=49.2
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
..++.|+.|+|+|+ |++||||+|+++.. ..++.|+|+| ||.+.|+.++|++|
T Consensus 5 ~~~kvGd~clAkws-Dg~wY~A~I~~v~~--------------------------~~~y~V~F~D-Gn~E~V~~s~LrPl 56 (81)
T 2ldm_A 5 SEFQINEQVLASWS-DSRFYPAKVTAVNK--------------------------DGTYTVKFYD-GVVQTVKHIHVKAF 56 (81)
Confidence 45889999999998 99999999999732 1279999999 99999999999999
Q ss_pred Cccc
Q psy4551 174 NPTF 177 (321)
Q Consensus 174 ~~~f 177 (321)
+.+-
T Consensus 57 ~~~~ 60 (81)
T 2ldm_A 57 SKDQ 60 (81)
Confidence 8753
No 18
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=98.40 E-value=4.4e-07 Score=67.16 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=47.9
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
..++.|+.|.|++ .|+.||-|+|.++.. + .++.|.|.| |+++.|...+|+++
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~~------------------------~--~~Y~V~F~d-G~~etvk~~~ikp~ 56 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVNK------------------------D--GTYTVKFYD-GVVQTVKHIHVKAF 56 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEECT------------------------T--SEEEEEETT-SCEEEEEGGGEEEC
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEECC------------------------C--CeEEEEEeC-CceEEEeHHHcccC
Confidence 4689999999999 799999999999842 1 379999999 99999999999999
Q ss_pred Cccc
Q psy4551 174 NPTF 177 (321)
Q Consensus 174 ~~~f 177 (321)
+.+-
T Consensus 57 ~~~~ 60 (67)
T 3p8d_A 57 SKDQ 60 (67)
T ss_dssp C---
T ss_pred Cccc
Confidence 9753
No 19
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=98.35 E-value=6.1e-07 Score=69.22 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=47.7
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
...+.+|+.|.|++ .|+.||-|+|++|..+ .++.|.|-| |+++.|...+|++
T Consensus 19 ~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~--------------------------~~YtV~F~D-G~~etvk~~~IKp 70 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDCRFYPAKVTAVNKD--------------------------GTYTVKFYD-GVVQTVKHIHVKA 70 (85)
T ss_dssp --CCCTTCEEEEEC-TTSCEEEEEEEEECTT--------------------------SEEEEEETT-SCEEEEEGGGEEE
T ss_pred CcccccCCEEEEEe-CCCCEeeEEEEEECCC--------------------------CeEEEEEeC-CCeEEecHHHccc
Confidence 45689999999999 7999999999998432 379999999 9999999999999
Q ss_pred cCccc
Q psy4551 173 LNPTF 177 (321)
Q Consensus 173 L~~~f 177 (321)
+|.+-
T Consensus 71 ~~~~~ 75 (85)
T 3qii_A 71 FSKDQ 75 (85)
T ss_dssp CC---
T ss_pred CChhh
Confidence 99753
No 20
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.25 E-value=0.00061 Score=49.69 Aligned_cols=58 Identities=12% Similarity=0.262 Sum_probs=50.5
Q ss_pred ccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc
Q psy4551 92 RLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 92 ~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr 171 (321)
+.-....|+.|.|++.-|+.||-|+|+++. .....+.|.|=| |+++.+..+||+
T Consensus 9 p~~~f~vgd~VmaRW~Gd~~yYparItSit-------------------------s~~~~Y~VkfKd-gT~e~L~~kDIK 62 (68)
T 2dig_A 9 PSRKFADGEVVRGRWPGSSLYYEVEILSHD-------------------------STSQLYTVKYKD-GTELELKENDIK 62 (68)
T ss_dssp CCCSSCSSCEEEEECTTTCCEEEEEEEEEE-------------------------TTTTEEEEECTT-SCEEEEETTTEE
T ss_pred CceEeecCCEEEEEccCCccceEEEEEEec-------------------------cCCceEEEEecC-CCEEEechhccc
Confidence 345688999999999988999999999984 223589999999 999999999999
Q ss_pred ccCc
Q psy4551 172 QLNP 175 (321)
Q Consensus 172 ~L~~ 175 (321)
++|.
T Consensus 63 p~~~ 66 (68)
T 2dig_A 63 SGPS 66 (68)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9985
No 21
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.13 E-value=0.0011 Score=48.22 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=49.1
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
.-....|+.|.|+++-|+.+|-|+|+++. .....+.|.|=| |+++.+..+||++
T Consensus 7 ~~~~~vgd~VmaRW~Gd~~yYparI~Si~-------------------------s~~~~Y~V~fKd-gT~e~L~~kDIkp 60 (66)
T 2l8d_A 7 NRKYADGEVVMGRWPGSVLYYEVQVTSYD-------------------------DASHLYTVKYKD-GTELALKESDIRL 60 (66)
T ss_dssp SSSSCSSCEEEEECTTSSCEEEEEEEEEE-------------------------TTTTEEEEEETT-SCEEEEEGGGEEC
T ss_pred ceEeecCCEEEEEcCCCccceEEEEEEec-------------------------cCCceEEEEecC-CCEEeechhcccc
Confidence 34688999999999989999999999984 233589999999 9999999999999
Q ss_pred cC
Q psy4551 173 LN 174 (321)
Q Consensus 173 L~ 174 (321)
++
T Consensus 61 ~~ 62 (66)
T 2l8d_A 61 QS 62 (66)
T ss_dssp SS
T ss_pred ch
Confidence 83
No 22
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=95.96 E-value=0.069 Score=44.48 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=48.4
Q ss_pred EEEEEeccee-eC-CCCChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCccccHHHHHHH
Q psy4551 184 AIECSLANVR-PV-GDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELIS 261 (321)
Q Consensus 184 Ai~C~LagV~-P~-~~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~~sIn~~LI~ 261 (321)
-++++|+||. |- ...|..+|.+++++++.+ ++.+.+.+..... ..+.+. ....+|.. ..+||.+||+
T Consensus 31 ~~~VRL~gIDaPE~~q~~g~~A~~~l~~ll~~--g~~V~~~~d~~~~---~D~ygR--~la~v~~~----g~~vn~~lv~ 99 (143)
T 4eqp_A 31 PMTFRLLLVDTPEFNEKYGPEASAFTKKMVEN--AKKDEVEFDKGQR---TDKYGR--GLAYIYAD----GKMVNEALVR 99 (143)
T ss_dssp EEEEEETTEECCCTTSTTHHHHHHHHHHHHHH--CSCEEEECCSSCS---BCTTSC--EEEEEEET----TEEHHHHHHH
T ss_pred EEEEEEEeecCCCcCCchHHHHHHHHHHHHhc--CCeEEEEEccccc---cCCCCC--EEEEEEEC----CchHHHHHHH
Confidence 5788999998 43 467899999999999974 3566654310000 112222 33444532 4689999999
Q ss_pred cCCccc
Q psy4551 262 RGFAVS 267 (321)
Q Consensus 262 ~GlA~~ 267 (321)
+|||..
T Consensus 100 ~GlA~v 105 (143)
T 4eqp_A 100 QGLAKV 105 (143)
T ss_dssp TTSSEE
T ss_pred CCCeEE
Confidence 999986
No 23
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=95.95 E-value=0.06 Score=54.49 Aligned_cols=70 Identities=24% Similarity=0.215 Sum_probs=51.8
Q ss_pred eEEEEEeccee-e-----------CCCCChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCC
Q psy4551 183 QAIECSLANVR-P-----------VGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGE 250 (321)
Q Consensus 183 qAi~C~LagV~-P-----------~~~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~ 250 (321)
.-+.++|+||. | ....|..+|.+++++++.+ +.+.+.+...+. .+-+...+|..
T Consensus 231 ~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~---r~V~~~~~~~D~--------ygR~la~v~~~--- 296 (570)
T 3bdl_A 231 CLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQ---REVEVEVESMDK--------AGNFIGWLHID--- 296 (570)
T ss_dssp EEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTT---CEEEEEEEEECT--------TSCEEEEEEET---
T ss_pred cEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcC---CeEEEEEEeEcC--------CCCEEEEEEEC---
Confidence 45677788876 4 2457999999999999986 788888765432 22334556654
Q ss_pred ccccHHHHHHHcCCccc
Q psy4551 251 QDVNISQELISRGFAVS 267 (321)
Q Consensus 251 ~~~sIn~~LI~~GlA~~ 267 (321)
+.+||..||++|||..
T Consensus 297 -~~~v~~~Lv~~GlA~~ 312 (570)
T 3bdl_A 297 -GANLSVLLVEHALSKV 312 (570)
T ss_dssp -TEEHHHHHHHTTSSEE
T ss_pred -CEEHHHHHHHcCCcEE
Confidence 3589999999999987
No 24
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=93.87 E-value=0.14 Score=37.43 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=39.2
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
...++|+-|.|.+ .||.+|=|.|.+|... ..++.|+|-| |..-.|.+.+|.+
T Consensus 12 ~~f~vGddVLA~w-tDGl~Y~gtI~~V~~~-------------------------~gtC~V~F~D-~s~~w~~~kdi~~ 63 (66)
T 2eqj_A 12 CKFEEGQDVLARW-SDGLFYLGTIKKINIL-------------------------KQSCFIIFED-SSKSWVLWKDIQT 63 (66)
T ss_dssp CCSCTTCEEEEEC-TTSCEEEEEEEEEETT-------------------------TTEEEEEETT-TEEEEEETTTEEC
T ss_pred ccccCCCEEEEEE-ccCcEEEeEEEEEccC-------------------------CcEEEEEEcc-CCEEEEEeecccc
Confidence 4689999999999 5999999999998532 2367777766 4444666766653
No 25
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=93.84 E-value=0.09 Score=43.36 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=62.9
Q ss_pred CCCCEEEEEEEEEccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCc-ccccccccCCCCCEEEEEEccCC----eEEEE
Q psy4551 41 SSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKAN-QETHRLTEVKPGQIVAALLHLDQ----KWYRA 115 (321)
Q Consensus 41 ~~g~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~-~~~~~~~~~~~G~~caa~~~~d~----~WyRa 115 (321)
..|..++.+|+.| .-..+.|...+. -.. .+.+ -++.... +.......+..|+-|=|....++ .||+|
T Consensus 13 ~~G~~y~a~V~~v-~~d~~~V~f~n~-w~~----~~~v--p~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a 84 (128)
T 3h8z_A 13 SNGAFYKGFVKDV-HEDSVTIFFENN-WQS----ERQI--PFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLA 84 (128)
T ss_dssp TTSCEEEEEEEEE-CSSEEEEEETTC-TTC----CEEE--EGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEE
T ss_pred CCCCEEEEEEEEE-eCCcEEEEEccc-cCc----ceEe--chhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEE
Confidence 5589999999997 566799988652 100 0000 0000000 00001245789999988653334 69999
Q ss_pred EEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCC--eEEeecCCccccCcc
Q psy4551 116 QVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGD--SMDMPQPSVYQLNPT 176 (321)
Q Consensus 116 ~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn--~~~V~~~~Lr~L~~~ 176 (321)
+|..+++ ..+.|.|.+|+. .+.|....||++++.
T Consensus 85 ~I~~~kg---------------------------~f~~V~y~~~~~~~~EiV~~~rlR~~n~~ 120 (128)
T 3h8z_A 85 RVRMMKG---------------------------DFYVIEYAACDATYNEIVTLERLRPVNPN 120 (128)
T ss_dssp EEEEEET---------------------------TEEEEEETTC----CEEECGGGEEECCCC
T ss_pred EEEEeeC---------------------------CEEEEEEcCCCCCcceEEehhheEeCCCC
Confidence 9999752 279999999998 589999999999865
No 26
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.01 E-value=0.051 Score=41.71 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=19.7
Q ss_pred cCCceeeeeeecccceeeeeeecc
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVMTV 144 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~~v 144 (321)
+.+++|++++++++.||||+|.++
T Consensus 23 k~g~~vaak~~d~n~WyRakV~~v 46 (85)
T 2eqk_A 23 ENDMHCAVKIQDKNQWRRGQIIRM 46 (85)
T ss_dssp CSSCEEEEECSSSCCEEEEEEEEE
T ss_pred cCCCEEEEEeCCCCeEEEEEEEEe
Confidence 467789999999999999876643
No 27
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=92.45 E-value=0.29 Score=34.70 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=41.3
Q ss_pred cCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccC
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLN 174 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~ 174 (321)
....|+-|.|+. .||.+|=|.|.+|... ...+.|+|-| |....+.+++|.++.
T Consensus 3 ~f~~GedVLarw-sDG~fYlGtI~~V~~~-------------------------~~~clV~F~D-~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 3 RLWEGQDVLARW-TDGLLYLGTIKKVDSA-------------------------REVCLVQFED-DSQFLVLWKDISPAA 55 (58)
T ss_dssp SCCTTCEEEEEC-TTSCEEEEEEEEEETT-------------------------TTEEEEEETT-SCEEEEEGGGEEECS
T ss_pred ccccCCEEEEEe-cCCCEEeEEEEEEecC-------------------------CCEEEEEEcC-CCeEEEEhHHccccc
Confidence 367899999998 5999999999998532 2368888876 566688888887654
No 28
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.25 E-value=0.3 Score=35.56 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=39.0
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
....+|+-|.|++ .|+.+|-+.|.+|... ...+.|+|-| +..-.+.+.+|.++
T Consensus 8 ~~f~eGqdVLarW-sDGlfYlGtV~kV~~~-------------------------~~~ClV~FeD-~s~~wv~~kdi~~~ 60 (68)
T 2e5p_A 8 PRLWEGQDVLARW-TDGLLYLGTIKKVDSA-------------------------REVCLVQFED-DSQFLVLWKDISPA 60 (68)
T ss_dssp CCCCTTCEEEEEC-TTSSEEEEEEEEEETT-------------------------TTEEEEEETT-TEEEEEETTTEECC
T ss_pred cccccCCEEEEEe-cCCcEEEeEEEEEecC-------------------------CcEEEEEEcc-CCeeeeeeeccccc
Confidence 4588999999998 5999999999998521 2357777766 33346777777654
No 29
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.32 Score=37.78 Aligned_cols=54 Identities=9% Similarity=0.194 Sum_probs=43.3
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeecCCc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQPSV 170 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~~~L 170 (321)
...+.+|..|.|.. ++.||+|+|+++... .+...+-|+|++|-.. +.|+.+.|
T Consensus 21 ~~~~~vG~kv~v~~--~~~~y~AkIl~ir~~-----------------------~~~~~YyVHY~g~NkRlDEWV~~~rl 75 (92)
T 2ro0_A 21 VDDIIIKCQCWVQK--NDEERLAEILSINTR-----------------------KAPPKFYVHYVNYNKRLDEWITTDRI 75 (92)
T ss_dssp TTSCCTTCEEEEEE--TTEEEEEEEEEEECS-----------------------SSSCEEEEEETTSCTTSCEEEEGGGE
T ss_pred cccccCCCEEEEEE--CCEEEEEEEEEEEEc-----------------------CCCcEEEEEeCCcCcccccccCHhHc
Confidence 34578999999985 899999999998531 2335899999999877 68999888
Q ss_pred c
Q psy4551 171 Y 171 (321)
Q Consensus 171 r 171 (321)
.
T Consensus 76 ~ 76 (92)
T 2ro0_A 76 N 76 (92)
T ss_dssp E
T ss_pred c
Confidence 4
No 30
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=91.22 E-value=0.25 Score=37.00 Aligned_cols=61 Identities=10% Similarity=-0.021 Sum_probs=44.7
Q ss_pred ccCCCCCEEEEEEc--cCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeecCC
Q psy4551 94 TEVKPGQIVAALLH--LDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQPS 169 (321)
Q Consensus 94 ~~~~~G~~caa~~~--~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~~~ 169 (321)
..+.+|+.|.+... .++.||.|+|+++... .+...+.|.|.++... +.|+.+.
T Consensus 4 ~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~-----------------------~~~~~Y~VHY~gwnkr~DEWV~~~r 60 (76)
T 2lcc_A 4 EPCLTGTKVKVKYGRGKTQKIYEASIKSTEID-----------------------DGEVLYLVHYYGWNVRYDEWVKADR 60 (76)
T ss_dssp CCSSTTCEEEEEEEETTEEEEEEEEEEEEEEE-----------------------TTEEEEEEEETTSCCSSCEEEEGGG
T ss_pred cccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc-----------------------CCceEEEEEeCCcCCCceEecChhh
Confidence 45789999999875 2369999999997521 1223688999888765 6899998
Q ss_pred ccccCccc
Q psy4551 170 VYQLNPTF 177 (321)
Q Consensus 170 Lr~L~~~f 177 (321)
|......+
T Consensus 61 i~~~~~~~ 68 (76)
T 2lcc_A 61 IIWPLDKG 68 (76)
T ss_dssp EECSSCSS
T ss_pred ccccccch
Confidence 87665543
No 31
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=91.05 E-value=0.17 Score=40.05 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=43.6
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeecCCc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQPSV 170 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~~~L 170 (321)
...+.+|+.|.+.. ++.||.|+|+++... ++...+.|.|.+|... +.|+.+.|
T Consensus 20 ~~~f~vGekVl~~~--~~~~YeAkIl~v~~~-----------------------~~~~~Y~VHY~GwNkR~DEWV~~~Rl 74 (102)
T 2f5k_A 20 KPKFQEGERVLCFH--GPLLYEAKCVKVAIK-----------------------DKQVKYFIHYSGWNKNWDEWVPESRV 74 (102)
T ss_dssp SCSCCTTCEEEEES--SSSEEEEEEEEEEEE-----------------------TTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred CcccCCCCEEEEEE--CCEEEEEEEEEEEEc-----------------------CCCcEEEEEeCCcCCCceeeccHhhc
Confidence 34688999999975 899999999998521 1224788999988765 68888877
Q ss_pred cccCc
Q psy4551 171 YQLNP 175 (321)
Q Consensus 171 r~L~~ 175 (321)
++..+
T Consensus 75 ~k~t~ 79 (102)
T 2f5k_A 75 LKYVD 79 (102)
T ss_dssp EESSH
T ss_pred ccCCH
Confidence 76554
No 32
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.97 E-value=0.33 Score=37.28 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=44.5
Q ss_pred cccCCCCCEEEEEEc---cCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeec
Q psy4551 93 LTEVKPGQIVAALLH---LDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQ 167 (321)
Q Consensus 93 ~~~~~~G~~caa~~~---~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~ 167 (321)
...+.+|+.|.|.+. .++.||.|+|+++... .+...+-|+|++|-.. +.|+.
T Consensus 7 ~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~-----------------------~~~~~YyVHY~g~NkRlDEWV~~ 63 (87)
T 2eko_A 7 GGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDI-----------------------SGRKLFYVHYIDFNRRLDEWVTH 63 (87)
T ss_dssp SCSCCTTCEEEBCEECTTCCEECCEEEEEEECCS-----------------------SSCCCEEEEECSSCSCCCEEECT
T ss_pred cccccCCCEEEEEEcccCCCCeEEEEEEEEEEEc-----------------------CCCcEEEEEeCCCCcccccccCH
Confidence 346889999999863 4889999999998531 1235799999999877 68999
Q ss_pred CCcc
Q psy4551 168 PSVY 171 (321)
Q Consensus 168 ~~Lr 171 (321)
+.|.
T Consensus 64 ~rl~ 67 (87)
T 2eko_A 64 ERLD 67 (87)
T ss_dssp TTBC
T ss_pred hHcc
Confidence 9986
No 33
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=90.29 E-value=0.3 Score=40.36 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=42.2
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeecCCcc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQPSVY 171 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~~~Lr 171 (321)
..+.+|+.|.+.+. |+.||.|+|+++... .+.+...+.|+|.+|-.. +.|+.+.|.
T Consensus 11 ~~~~vGe~v~~~~~-d~~~y~AkIl~i~~~---------------------~~~~~~~YyVHY~gwNkR~DEWV~~~ri~ 68 (133)
T 1wgs_A 11 VTVEIGETYLCRRP-DSTWHSAEVIQSRVN---------------------DQEGREEFYVHYVGFNRRLDEWVDKNRLA 68 (133)
T ss_dssp CCCCTTSEEEEEET-TTEEEEEEEEEEEEE---------------------TTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred cccCCCCEEEEEeC-CCCEEEEEEEEEEec---------------------cCCCceEEEEeccCcCCCceeecChhhcc
Confidence 45889999999874 789999999997421 011234788999988766 689999885
No 34
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.21 E-value=0.57 Score=33.63 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=39.5
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
.....|+-|.|++ .||.+|=+.|.+|.. ....+.|+|-| +..-.|.+++|.++
T Consensus 6 ~~f~eGqdVLarW-sDGlfYlgtV~kV~~-------------------------~~~~ClV~FeD-~s~~wv~~kdi~~~ 58 (63)
T 2e5q_A 6 SGLTEGQYVLCRW-TDGLYYLGKIKRVSS-------------------------SKQSCLVTFED-NSKYWVLWKDIQHA 58 (63)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEECCCCS-------------------------TTSEEEEEETT-SCEEEEEGGGEECC
T ss_pred cceecCCEEEEEe-cCCCEEEEEEEEEec-------------------------CCCEEEEEEcc-CceeEEEeeccccc
Confidence 4588999999998 599999999999742 12367777766 33447778887654
No 35
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=89.99 E-value=0.49 Score=36.91 Aligned_cols=54 Identities=9% Similarity=0.194 Sum_probs=43.0
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeecCCc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQPSV 170 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~~~L 170 (321)
...+.+|+.|.|.. ++.||+|+|+++... .+...+-|.|++|-.. +.|+.+.|
T Consensus 23 ~~~~~vG~kv~v~~--~~~~yeAeIl~ir~~-----------------------~g~~~YYVHY~g~NkRlDEWV~~~RI 77 (94)
T 2rnz_A 23 VDDIIIKCQCWVQK--NDEERLAEILSINTR-----------------------KAPPKFYVHYVNYNKRLDEWITTDRI 77 (94)
T ss_dssp GGGCCTTEEEEEEC--SSCEEEEEEEEEECS-----------------------SSSCEEEEECTTSCSTTCEEEETTTB
T ss_pred cccccCCCEEEEEE--CCEEEEEEEEEEEEc-----------------------CCCcEEEEEeCCcCcccccccCHHHc
Confidence 34578999999874 899999999998532 2335899999999766 68999988
Q ss_pred c
Q psy4551 171 Y 171 (321)
Q Consensus 171 r 171 (321)
.
T Consensus 78 ~ 78 (94)
T 2rnz_A 78 N 78 (94)
T ss_dssp C
T ss_pred c
Confidence 5
No 36
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=89.73 E-value=0.53 Score=36.55 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=44.9
Q ss_pred CCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeecCCccccCc
Q psy4551 98 PGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQPSVYQLNP 175 (321)
Q Consensus 98 ~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~~~Lr~L~~ 175 (321)
.|..|.++. .++.||+|+|+++.... .+.++..+-|+|.+|-.. +.|+.+.|.++.+
T Consensus 17 ~~e~vlc~~-~dg~~yeAeIl~ir~~~--------------------~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~~ 75 (92)
T 2bud_A 17 PDKIYFIRR-EDGTVHRGQVLQSRTTE--------------------NAAAPDEYYVHYVGLNRRLDGWVGRHRISDNAD 75 (92)
T ss_dssp TTSCEEEEC-TTSCEEEEEEEEEECTT--------------------TCSSCCEEEEECSSSCTTTCEEEETTTEESCHH
T ss_pred CCCEEEEEe-CCCCEEEEEEEEEeecc--------------------CCCCCcEEEEEeCCcccccccccCHHHhchhcc
Confidence 456777775 48999999999975321 011345899999999876 7999999999988
Q ss_pred ccc
Q psy4551 176 TFL 178 (321)
Q Consensus 176 ~f~ 178 (321)
.+.
T Consensus 76 ~~g 78 (92)
T 2bud_A 76 DLG 78 (92)
T ss_dssp HHH
T ss_pred cCC
Confidence 743
No 37
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=89.64 E-value=0.64 Score=39.29 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=39.1
Q ss_pred cCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr 171 (321)
.-..|.-|.|+++.++.||.|+|.....+ .++.|.| |=|....|...+|.
T Consensus 8 ~~~iG~rVfArWsd~~yyYpG~V~~~~~~--------------------------~~Y~V~F-dDG~~k~v~~~div 57 (156)
T 1ssf_A 8 NSFVGLRVVAKWSSNGYFYSGKITRDVGA--------------------------GKYKLLF-DDGYECDVLGKDIL 57 (156)
T ss_dssp CCSTTCEEEECSSCSSEEEEEEEEECCTT--------------------------TEEEEEC-TTSCEEEEETTTEE
T ss_pred cchhccEEEEEcCCCCcccccEEEEeccC--------------------------CEEEEEE-cCCCeeEeeccceE
Confidence 35789999999987778889999985322 3688877 44899898877765
No 38
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=89.10 E-value=0.33 Score=43.22 Aligned_cols=64 Identities=8% Similarity=0.104 Sum_probs=46.1
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
..++.|+.+.++. .++.||||+|++|.+.+ .+.++.|.|-|=|. ..|+.++|..-
T Consensus 7 ~~l~Vg~~vlg~k-~~~~W~rg~v~~I~~~~-----------------------~g~~YkVkF~~~g~-~ivs~~hiA~~ 61 (213)
T 3dlm_A 7 GDLIVSMRILGKK-RTKTWHKGTLIAIQTVG-----------------------PGKKYKVKFDNKGK-SLLSGNHIAYD 61 (213)
T ss_dssp TTEETTCEEEEEC-TTSBEEEEEEEEEEEET-----------------------TEEEEEEEESSSCE-EEECGGGEEES
T ss_pred CcEEEccEEEEEe-cCCcEEEEEEEEEEECC-----------------------CCeEEEEEEcCCCC-EEeecceEEEe
Confidence 4688999999998 57999999999986532 12478999987665 46777777652
Q ss_pred -CcccccCCc
Q psy4551 174 -NPTFLGLRF 182 (321)
Q Consensus 174 -~~~f~~lP~ 182 (321)
.+....+|-
T Consensus 62 ~~p~~~~l~v 71 (213)
T 3dlm_A 62 YHPPADKLYV 71 (213)
T ss_dssp SCCCGGGCCT
T ss_pred cCCCccEEeE
Confidence 344444543
No 39
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=88.17 E-value=1.3 Score=35.86 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=45.6
Q ss_pred CCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc---cc
Q psy4551 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY---QL 173 (321)
Q Consensus 97 ~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr---~L 173 (321)
..|.-|.|+++.++.||-++|+.... ...+.|.|=| |....|..++|- +|
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~~~--------------------------~~ky~V~FdD-g~~~~v~~k~iiv~d~i 58 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRDVG--------------------------AGKYKLLFDD-GYECDVLGKDILLCDPI 58 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEE--------------------------TTEEEEEETT-SCEEEEEGGGEECCSSC
T ss_pred ccceEEEEEeccCCcCcccEEEEecc--------------------------CCeEEEEEcC-CCeeEeecceEEEeccc
Confidence 46889999998666999999988432 1378888744 788888878877 66
Q ss_pred CcccccCCceEEEEEecc
Q psy4551 174 NPTFLGLRFQAIECSLAN 191 (321)
Q Consensus 174 ~~~f~~lP~qAi~C~Lag 191 (321)
| ..+++.|...+
T Consensus 59 p------~g~~V~A~ted 70 (123)
T 2g3r_A 59 P------LDTEVTALSED 70 (123)
T ss_dssp C------TTCEEEEECTT
T ss_pred C------CCcEEEEeecC
Confidence 6 25677776644
No 40
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=88.05 E-value=1.2 Score=32.50 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=39.2
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
.....|+-|.|++ .||.+|=+.|++.. ...+.|+|-|- ....|.+++|+.|
T Consensus 14 ~~~~~geDVL~rw-~DG~fYLGtIVd~~---------------------------~~~ClV~FeD~-S~~Wv~~kdi~kl 64 (69)
T 2xk0_A 14 VTYALQEDVFIKC-NDGRFYLGTIIDQT---------------------------SDQYLIRFDDQ-SEQWCEPDKLRKL 64 (69)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEEC---------------------------SSCEEEEETTC-CEEEECTTTEECS
T ss_pred cccccCCeEEEEe-cCCCEEEEEEEecC---------------------------CceEEEEecCC-cceeeeHHHHHhh
Confidence 5678999999997 69999999997742 23577777663 2347888888877
Q ss_pred C
Q psy4551 174 N 174 (321)
Q Consensus 174 ~ 174 (321)
-
T Consensus 65 ~ 65 (69)
T 2xk0_A 65 G 65 (69)
T ss_dssp S
T ss_pred c
Confidence 5
No 41
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=85.88 E-value=0.46 Score=32.67 Aligned_cols=21 Identities=48% Similarity=0.684 Sum_probs=17.0
Q ss_pred CCceeeeeeecccceeeeeee
Q psy4551 122 PGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 122 ~~~~~~~~~~~~~~~~r~~v~ 142 (321)
.++.|+++.+.|+.||||.|.
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~ 24 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVE 24 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEE
Confidence 466788899999999997554
No 42
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=84.40 E-value=1.2 Score=33.34 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=38.2
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr 171 (321)
.....|+-|.|++ .||.+|=|.|.+|... ...+.|+|-| |....+.+++|.
T Consensus 25 ~~f~eGeDVLarw-sDGlfYLGTI~kV~~~-------------------------~e~ClV~F~D-~S~~W~~~kdi~ 75 (79)
T 2m0o_A 25 PRLWEGQDVLARW-TDGLLYLGTIKKVDSA-------------------------REVCLVQFED-DSQFLVLWKDIS 75 (79)
T ss_dssp CCCCTTCEEEBCC-TTSCCCEEEEEEEETT-------------------------TTEEEEEETT-SCEEEEETTTBC
T ss_pred ceeccCCEEEEEe-cCCCEEeEEEEEeccC-------------------------CCEEEEEEcC-CCeEEEEeeccc
Confidence 4578999999998 5999999999998421 2367777765 455577777774
No 43
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=84.35 E-value=0.21 Score=38.22 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=44.7
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeecCCcc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQPSVY 171 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~~~Lr 171 (321)
..+.+|+.|.+.. ++.||.|+|+++... ++...+.|+|.+|... +.|+.+.|+
T Consensus 11 ~~~~~Gekv~~~~--~~~~y~AkIl~i~~~-----------------------~~~~~YyVHY~GwNkR~DEWV~~~Rl~ 65 (85)
T 2lrq_A 11 TLFVDGERVLCFH--GPLIYEAKVLKTKPD-----------------------ATPVEYYIHYAGWSKNWDEWVPENRVL 65 (85)
Confidence 4578999999886 679999999997521 1235799999998876 588888887
Q ss_pred ccCcc
Q psy4551 172 QLNPT 176 (321)
Q Consensus 172 ~L~~~ 176 (321)
+..++
T Consensus 66 k~t~e 70 (85)
T 2lrq_A 66 KYNDD 70 (85)
Confidence 76654
No 44
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=82.98 E-value=1.3 Score=35.82 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=41.1
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
..+..|+.|.|+. .++.+|||+|+.+... ..+.|.|-|=-.+..++..+|--.
T Consensus 4 ~~v~vGq~V~akh-~ngryy~~~V~~~~~~--------------------------~~y~V~F~DgS~s~dl~peDIvs~ 56 (118)
T 2qqr_A 4 QSITAGQKVISKH-KNGRFYQCEVVRLTTE--------------------------TFYEVNFDDGSFSDNLYPEDIVSQ 56 (118)
T ss_dssp SCCCTTCEEEEEC-TTSSEEEEEEEEEEEE--------------------------EEEEEEETTSCEEEEECGGGBCSS
T ss_pred ceeccCCEEEEEC-CCCCEEeEEEEEEeeE--------------------------EEEEEEcCCCCccCCCCHhhcccc
Confidence 4689999999996 5899999999997421 257788877666777777777554
Q ss_pred C
Q psy4551 174 N 174 (321)
Q Consensus 174 ~ 174 (321)
+
T Consensus 57 d 57 (118)
T 2qqr_A 57 D 57 (118)
T ss_dssp C
T ss_pred c
Confidence 4
No 45
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=81.03 E-value=0.9 Score=34.61 Aligned_cols=22 Identities=50% Similarity=0.847 Sum_probs=17.8
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..+++|++..+.|+.||||.|.
T Consensus 29 ~~G~~c~a~~~~d~~wyRA~I~ 50 (94)
T 3fdr_A 29 HVGDIVAAPLPTNGSWYRARVL 50 (94)
T ss_dssp CTTCEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEEE
Confidence 4667788888889999998666
No 46
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=79.95 E-value=1 Score=33.54 Aligned_cols=22 Identities=50% Similarity=0.702 Sum_probs=17.9
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..++.|+++.+.|+.||||.|.
T Consensus 19 kvGd~C~A~ys~Dg~wYRA~I~ 40 (77)
T 3pnw_C 19 KPGDECFALYWEDNKFYRAEVE 40 (77)
T ss_dssp CTTCEEEEEETTTTEEEEEEEE
T ss_pred CcCCEEEEEECCCCCEEEEEEE
Confidence 4567788899999999997665
No 47
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=79.15 E-value=1.1 Score=32.02 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=17.5
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..++.|.++++.|+.||||.|.
T Consensus 10 ~vGd~c~A~~s~Dg~wYrA~I~ 31 (64)
T 4a4f_A 10 KVGDKCMAVWSEDGQCYEAEIE 31 (64)
T ss_dssp CTTCEEEEECTTTSSEEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEE
Confidence 3566788899999999997555
No 48
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=78.86 E-value=1.1 Score=31.29 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=17.5
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..++.|.++.+.|+.||||.|.
T Consensus 5 ~~G~~c~A~~s~Dg~wYrA~I~ 26 (59)
T 1mhn_A 5 KVGDKCSAIWSEDGCIYPATIA 26 (59)
T ss_dssp CTTCEEEEECTTTSCEEEEEEE
T ss_pred CcCCEEEEEECCCCCEEEEEEE
Confidence 3466788889999999997665
No 49
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=75.88 E-value=1.4 Score=32.68 Aligned_cols=22 Identities=50% Similarity=0.702 Sum_probs=17.6
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..++.|+++.+.|+.||||.|.
T Consensus 11 ~~G~~c~A~~s~Dg~wYRA~I~ 32 (78)
T 2d9t_A 11 KPGDECFALYWEDNKFYRAEVE 32 (78)
T ss_dssp CTTCEEEEECTTTCCEEEEEEE
T ss_pred CcCCEEEEEECCCCCEEEEEEE
Confidence 3456788899999999998666
No 50
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=74.04 E-value=1.5 Score=34.42 Aligned_cols=24 Identities=46% Similarity=0.761 Sum_probs=19.0
Q ss_pred cCCceeeeeeecccceeeeeeecc
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVMTV 144 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~~v 144 (321)
..+++|++..+.|+.||||.|..+
T Consensus 34 ~~G~~c~a~~~~d~~wyRA~V~~~ 57 (110)
T 2diq_A 34 HVGDIVAAPLPTNGSWYRARVLGT 57 (110)
T ss_dssp CTTCEEEECCTTTCSCEEEEECCC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEE
Confidence 466778888888999999988743
No 51
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=71.11 E-value=11 Score=33.38 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=47.9
Q ss_pred HHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEE
Q psy4551 75 VESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLEL 154 (321)
Q Consensus 75 ~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V 154 (321)
.+=+++|+..-.. .+...+++|+.+.+.. +|+|++|+|+++. . ..++|
T Consensus 141 r~FIk~YL~~yP~---rpmv~~~~GQ~i~~E~--~g~w~~~~V~~vD-------------------------~--SLv~v 188 (213)
T 3dlm_A 141 RDFIEEYVTAYPN---RPMVLLKSGQLIKTEW--EGTWWKSRVEEVD-------------------------G--SLVRI 188 (213)
T ss_dssp HHHHHHHHHHTTC---CCCCCCCTTCEEEEEE--TTEEEEEEEEEEE-------------------------T--TEEEE
T ss_pred HHHHHHHHHhCCC---CceEEcCCCCEEEEEe--cCcEEEEEEEEEc-------------------------c--eeEEE
Confidence 3446666655332 3567899999999976 8999999999973 2 37888
Q ss_pred EEEEeCCeEEeecCCcc
Q psy4551 155 YFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 155 ~fIDyGn~~~V~~~~Lr 171 (321)
+|-|-=..|.+-.-+.|
T Consensus 189 ~f~~dkr~EWIYRGS~R 205 (213)
T 3dlm_A 189 LFLDDKRCEWIYRGSTR 205 (213)
T ss_dssp EETTTTEEEEEETTCTT
T ss_pred EEcCCCeeEEEEcCCcc
Confidence 88877777887766554
No 52
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=71.02 E-value=2.2 Score=32.61 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=17.7
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..++.|.++.+.|+.||||.|.
T Consensus 12 kvGd~C~A~ys~Dg~wYrA~I~ 33 (88)
T 1g5v_A 12 KVGDKCSAIWSEDGCIYPATIA 33 (88)
T ss_dssp CSSCEEEEECTTTCCEEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEE
Confidence 4567788999999999997554
No 53
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=70.48 E-value=2.3 Score=35.83 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=17.8
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..+++|++..+.|+.||||.|.
T Consensus 49 ~~G~~c~A~~~~d~~wyRa~I~ 70 (169)
T 3ntk_A 49 KEGALCVAQFPEDEVFYRAQIR 70 (169)
T ss_dssp CTTCEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEEE
Confidence 5667788888889999998666
No 54
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=68.03 E-value=11 Score=29.79 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=47.7
Q ss_pred ccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc
Q psy4551 92 RLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 92 ~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr 171 (321)
....+..|++|-|+. ..--|+-|+|.++.... .......+.|+|..-.....|+.++|.
T Consensus 16 ~~~~~~~GdlVwaK~-kGyP~WPa~V~~~p~~~--------------------~k~~~~~~~V~FFGt~~~awv~~~~l~ 74 (110)
T 1ri0_A 16 RQKEYKCGDLVFAKM-KGYPHWPARIDEMPEAA--------------------VKSTANKYQVFFFGTHETAFLGPKDLF 74 (110)
T ss_dssp CSSSCCTTCEEEEEE-TTEEEEEEEEECCCSSS--------------------SCCCSSCEEEEETTTTEEEEECSTTEE
T ss_pred ccCCCCCCCEEEEEe-CCCCCCCEEEecccHhh--------------------cCCCCCEEEEEEecCCCEEEECHHHcc
Confidence 345789999999997 34479999999752210 111235799999877777799999999
Q ss_pred ccCccc
Q psy4551 172 QLNPTF 177 (321)
Q Consensus 172 ~L~~~f 177 (321)
++.+..
T Consensus 75 pf~~~~ 80 (110)
T 1ri0_A 75 PYEESK 80 (110)
T ss_dssp CHHHHH
T ss_pred chhhhH
Confidence 998654
No 55
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=67.83 E-value=2.7 Score=36.35 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=17.7
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..+..|++..+.|+.||||.|.
T Consensus 67 ~~G~~c~a~~~~d~~wyRa~V~ 88 (201)
T 4b9w_A 67 EIGRPCCAFFSGDGNWYRALVK 88 (201)
T ss_dssp CTTCEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEEE
Confidence 3566788889999999998665
No 56
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=66.74 E-value=3 Score=36.78 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=18.0
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..+..|++.++.|+.||||.|.
T Consensus 67 ~~G~~c~a~~~~d~~WyRa~V~ 88 (226)
T 4b9x_A 67 EIGRPCCAFFSGDGNWYRALVK 88 (226)
T ss_dssp CTTCEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEEE
Confidence 4567788889999999998665
No 57
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=66.15 E-value=9.5 Score=32.96 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.8
Q ss_pred cCCCCCEEEEEEccCCeEEEEEEEEe
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQVMTV 120 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V~~i 120 (321)
....|..|.|.|.+.-.+|||.|...
T Consensus 116 ~f~~G~~VLAlYP~TT~FY~A~V~~~ 141 (180)
T 3mea_A 116 LFQKEQLVLALYPQTTCFYRALIHAP 141 (180)
T ss_dssp SCCTTCEEEEECTTSSEEEEEEEEEC
T ss_pred cCCCCCEEEEeCCCCceeeEEEEecC
Confidence 47899999999998899999999995
No 58
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=63.03 E-value=1.4 Score=35.99 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=39.9
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
...+..|+.|.|+. .+|.+|||.|+.+.. ...+.|.|-|=-.+..+...+|--
T Consensus 4 ~~~v~vGq~V~ak~-~ngryy~~~V~~~~~--------------------------~~~y~V~F~DgS~s~dl~PedIvs 56 (123)
T 2xdp_A 4 EKVISVGQTVITKH-RNTRYYSCRVMAVTS--------------------------QTFYEVMFDDGSFSRDTFPEDIVS 56 (123)
T ss_dssp CCCCCTTCCCCCCC-CCCCCCCCEEEEEEE--------------------------EEEEEEEETTSCEEEEECGGGBCS
T ss_pred ccccccCCEEEEEC-CCCcEEeEEEEEEee--------------------------EEEEEEEcCCCCccCCCCHhHccc
Confidence 35689999999996 579999999999742 125778887766667776666643
Q ss_pred c
Q psy4551 173 L 173 (321)
Q Consensus 173 L 173 (321)
.
T Consensus 57 ~ 57 (123)
T 2xdp_A 57 R 57 (123)
T ss_dssp S
T ss_pred c
Confidence 3
No 59
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=54.24 E-value=17 Score=29.49 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=43.3
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
.+|..|..+-+++ .||+=|.|........ ..++|.|=| |-...++.++|+.+
T Consensus 63 GpP~~G~~V~V~W-~DG~~y~a~f~g~~~~--------------------------~~YtV~FeD-gs~~~~kR~~iyt~ 114 (123)
T 2xdp_A 63 GPPAEGEVVQVKW-PDGKLYGAKYFGSNIA--------------------------HMYQVEFED-GSQIAMKREDIYTL 114 (123)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEEEEE--------------------------EEEEEECTT-SCEEEEEGGGCCCS
T ss_pred CCCCCCCEEEEEc-CCCCEEeEEEeeeeeE--------------------------EEEEEEECC-CCeEEecHHHcccc
Confidence 5789999999998 5999999998885210 146666544 66778999999999
Q ss_pred Cccc
Q psy4551 174 NPTF 177 (321)
Q Consensus 174 ~~~f 177 (321)
.+.|
T Consensus 115 ~E~l 118 (123)
T 2xdp_A 115 DEEL 118 (123)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8865
No 60
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=53.88 E-value=18 Score=29.08 Aligned_cols=100 Identities=16% Similarity=0.293 Sum_probs=61.0
Q ss_pred CCCCEEEEEEEEEccCCeEEEEEcCCch-hHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEE
Q psy4551 41 SSDGSLTVFMSAVANPDRFWVQIMNDRA-IELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMT 119 (321)
Q Consensus 41 ~~g~~~~V~Vt~V~sp~~Fyvq~~~~~~-~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~ 119 (321)
..|-.....|+.+.+. .||.-.-++.+ .. ...-+++ -+.......+|..|..+-+++ .||+=|.|....
T Consensus 17 ~ngryy~~~V~~~~~~-~~y~V~F~DgS~s~-dl~peDI-------vs~dc~~~GpP~~G~~V~V~W-~DG~~y~a~f~g 86 (118)
T 2qqr_A 17 KNGRFYQCEVVRLTTE-TFYEVNFDDGSFSD-NLYPEDI-------VSQDCLQFGPPAEGEVVQVRW-TDGQVYGAKFVA 86 (118)
T ss_dssp TTSSEEEEEEEEEEEE-EEEEEEETTSCEEE-EECGGGB-------CSSCHHHHCCCCTTCEEEEEC-TTSCEEEEEEEE
T ss_pred CCCCEEeEEEEEEeeE-EEEEEEcCCCCccC-CCCHhhc-------ccccccccCCCCCCCEEEEEc-CCCCEeeeEEec
Confidence 4566778888888655 56644333221 00 0000111 111111235789999999998 589999999887
Q ss_pred ecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCccc
Q psy4551 120 VKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTF 177 (321)
Q Consensus 120 i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f 177 (321)
... ...++|.|=| |-...++.++|+.+.+.|
T Consensus 87 ~~~--------------------------~~~Y~V~feD-gs~~~~kR~~iyt~~E~l 117 (118)
T 2qqr_A 87 SHP--------------------------IQMYQVEFED-GSQLVVKRDDVYTLDEEL 117 (118)
T ss_dssp EEE--------------------------EEEEEEEETT-SCEEEECGGGEEETTSCC
T ss_pred eeE--------------------------EEEEEEEECC-CCEEEEcHHHeeccccCC
Confidence 421 0156666644 667788999999988764
No 61
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=52.21 E-value=37 Score=28.03 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=46.7
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
...+..|++|-|+. ..--|+-|+|....... .| ......+.|+|..-+....|+.++|.+
T Consensus 9 ~~~~~~GDlVWaKv-kGyPwWPa~V~~~~~~~------------~~-------~~~~~~~~V~FFG~~~~awv~~~~L~p 68 (147)
T 1khc_A 9 DKEFGIGDLVWGKI-KGFSWWPAMVVSWKATS------------KR-------QAMPGMRWVQWFGDGKFSEISADKLVA 68 (147)
T ss_dssp SSSCCTTCEEEEEE-TTTEEEEEEEECGGGTT------------SC-------CCCTTEEEEEETTTCCEEEEEGGGCEE
T ss_pred CccCcCCCEEEEec-CCcCCCCEEeccchhhh------------cc-------cCCCCeEEEEEecCCCEEEEcHHHCcc
Confidence 34689999999997 35579999999843110 00 012348999999888999999999999
Q ss_pred cCc
Q psy4551 173 LNP 175 (321)
Q Consensus 173 L~~ 175 (321)
+.+
T Consensus 69 ~~~ 71 (147)
T 1khc_A 69 LGL 71 (147)
T ss_dssp TTS
T ss_pred chH
Confidence 864
No 62
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=49.80 E-value=20 Score=31.97 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=40.2
Q ss_pred CCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeE--EeecCCcccc
Q psy4551 96 VKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSM--DMPQPSVYQL 173 (321)
Q Consensus 96 ~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~--~V~~~~Lr~L 173 (321)
-++|++|-|+-...|.||.|+|+.|...... + .+. .+.-.+.|.|=||.... .+...+||+-
T Consensus 3 yki~~~vd~~d~~~Gawfea~i~~v~~~~~~------~---------~~~-~d~~~y~v~y~~~~~~~~~~~~~~~irpr 66 (226)
T 3ask_A 3 YKVNEYVDARDTNMGAWFEAQVVRVTRKAPS------R---------PAL-EEDVIYHVKYDDYPENGVVQMNSRDVRAR 66 (226)
T ss_dssp SCTTCEEEEECTTTCCEEEEEEEEEEECC----------------------CCCEEEEEEETTCGGGCEEEEEGGGEEEC
T ss_pred cccCceEEeeecCCCceeEEEEEEEeccccc------c---------CCC-CCceEEEeecccCcccCceeccccccccc
Confidence 4689999999767799999999998532100 0 000 11235677777775554 4456677765
Q ss_pred Cc
Q psy4551 174 NP 175 (321)
Q Consensus 174 ~~ 175 (321)
-.
T Consensus 67 ar 68 (226)
T 3ask_A 67 AR 68 (226)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 63
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=49.73 E-value=21 Score=34.86 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhcCccc-ccccccCCCCCEEEEE---EccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccC
Q psy4551 71 LDQLVESMTDYYNQKANQE-THRLTEVKPGQIVAAL---LHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSD 146 (321)
Q Consensus 71 l~~L~~~L~~~~~~~~~~~-~~~~~~~~~G~~caa~---~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d 146 (321)
++++.+++++.+.+..... ..+...+++|+.||++ -..++.|--|+|++..+.
T Consensus 362 l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~----------------------- 418 (522)
T 3mp6_A 362 LAAAQTNAAAEFGSSYWTSEYNPNAPILVGSEVAYKPRRGSADGEWIQCEVLKVVAD----------------------- 418 (522)
T ss_dssp HHHHHHHTTSCCBCCSCCCSSSCCCCBCTTCEEEECCC-----CCEEEEEEEEEETT-----------------------
T ss_pred HHHHHHHHHHHhccCCeeeecccccccCCCCEEEEecCCCCCCCCEEEEEEEEEeCC-----------------------
Confidence 4444444444444322111 1123457999999996 224679999999997532
Q ss_pred CCCCeEEEEEE--EeC----CeEEeecCCccccCc
Q psy4551 147 STPPTLELYFV--DYG----DSMDMPQPSVYQLNP 175 (321)
Q Consensus 147 ~~~~~v~V~fI--DyG----n~~~V~~~~Lr~L~~ 175 (321)
++.++|.=+ |-. ..-.++.++|-+||+
T Consensus 419 --~~~y~v~d~~~~~~~~~~~~~~~~~~~~~~~p~ 451 (522)
T 3mp6_A 419 --GTRFEVRDPEPDELGNSGKVYKCNRKELLLIPP 451 (522)
T ss_dssp --TTEEEEEECSCBTTBTTCEEEEECGGGEEEECS
T ss_pred --CCEEEEeCCCCCCCCCCCeeEEccHHHEEECCC
Confidence 246888777 544 356889999999985
No 64
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=49.42 E-value=20 Score=27.82 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=47.6
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
..+..|++|-|+. ..--|+-|+|..... . +.+ |... ......+.|+|.+-.....|+.++|+++
T Consensus 7 ~~~~~GdlVwaK~-~g~p~WPa~V~~~~~--~-----p~~-------~~~~-~~~~~~~~V~FFg~~~~awv~~~~l~p~ 70 (110)
T 2daq_A 7 GKLHYKQIVWVKL-GNYRWWPAEICNPRS--V-----PLN-------IQGL-KHDLGDFPVFFFGSHDYYWVHQGRVFPY 70 (110)
T ss_dssp CSCCSSEEEEEEC-SSSCEEEEEECCTTT--S-----CHH-------HHTS-CCCSSCEEEEETTTTEEEEECSSSSEEC
T ss_pred CCCCCCCEEEEEe-CCCCCCceeeCChhh--C-----CHH-------Hhhc-cCCCCcEEEEEecCCCEEEEcHHHCcCc
Confidence 4578999999997 345799999997420 0 000 0000 1112469999998888899999999999
Q ss_pred Ccccc
Q psy4551 174 NPTFL 178 (321)
Q Consensus 174 ~~~f~ 178 (321)
.+...
T Consensus 71 ~~~~~ 75 (110)
T 2daq_A 71 VEGDK 75 (110)
T ss_dssp CSSCC
T ss_pred chhhH
Confidence 87654
No 65
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=47.94 E-value=19 Score=27.36 Aligned_cols=63 Identities=14% Similarity=0.309 Sum_probs=46.0
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQL 173 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L 173 (321)
.....|++|-|+. ..--|+-|+|.++..+. .......+.|+|.=-+....|+.++|.++
T Consensus 4 ~~f~~GdlVwaK~-~g~p~WPa~V~~~~~~~--------------------~k~~~~~~~V~FFGt~~~awv~~~~l~pf 62 (94)
T 3qby_A 4 HAFKPGDLVFAKM-KGYPHWPARIDDIADGA--------------------VKPPPNKYPIFFFGTHETAFLGPKDLFPY 62 (94)
T ss_dssp CCCCTTCEEEECC-TTSCCEEEEECCCCTTS--------------------BCCCTTCEEEEETTTCCEEEECGGGEEEH
T ss_pred CcCccCCEEEEec-CCCCCCCEEEeeccccc--------------------ccCCCCEEEEEEEcCCCcceEchhHeeEH
Confidence 4578999999997 35579999999863221 01123479999986666789999999998
Q ss_pred Cccc
Q psy4551 174 NPTF 177 (321)
Q Consensus 174 ~~~f 177 (321)
.+.+
T Consensus 63 ~~~~ 66 (94)
T 3qby_A 63 DKCK 66 (94)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8543
No 66
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=47.50 E-value=31 Score=28.00 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=32.2
Q ss_pred CEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEe-CCeEEeecCCccccCcc
Q psy4551 100 QIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDY-GDSMDMPQPSVYQLNPT 176 (321)
Q Consensus 100 ~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDy-Gn~~~V~~~~Lr~L~~~ 176 (321)
+.+=++. .+|.||-|.|..+. ++ .+.|.|-|- --.+.|+.+++|+.|+.
T Consensus 6 ~~VEV~~-~~G~~y~a~V~~v~------------------------~d---~~~V~f~n~w~~~~~vp~~~vRlpP~~ 55 (128)
T 3h8z_A 6 LPVEVRG-SNGAFYKGFVKDVH------------------------ED---SVTIFFENNWQSERQIPFGDVRLPPPA 55 (128)
T ss_dssp CEEEEEC-TTSCEEEEEEEEEC------------------------SS---EEEEEETTCTTCCEEEEGGGEECCCCC
T ss_pred cEEEEec-CCCCEEEEEEEEEe------------------------CC---cEEEEEccccCcceEechhhEEcCCCc
Confidence 3444443 57899999998863 22 577766432 11468999999976643
No 67
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=46.46 E-value=54 Score=25.97 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=38.9
Q ss_pred cccCCCCCEEEEEEccC----CeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCC---CeEEEEEEEeCC--eE
Q psy4551 93 LTEVKPGQIVAALLHLD----QKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTP---PTLELYFVDYGD--SM 163 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d----~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~---~~v~V~fIDyGn--~~ 163 (321)
...+.+|+-|.+.+ .| +.||-|+|+++.... +..+ ..+.|.|..+.. .+
T Consensus 17 ~~~F~~GEkVLc~h-gd~~k~~~lYeAKIl~v~~~~---------------------~~~g~~~~~Y~VHY~GWn~~wDE 74 (110)
T 3m9p_A 17 KFKFHSGEKVLCFE-PDPTKARVLYDAKIVDVIVGK---------------------DEKGRKIPEYLIHFNGWNRSWDR 74 (110)
T ss_dssp -CCSCTTCEEEEEC-SCTTSCCCEEEEEEEEEEEEE---------------------CTTCCEEEEEEEEETTSCGGGCE
T ss_pred CCcccCCCEEEEEc-CCCCCCCCceeeEEEEEEecc---------------------CcccccceEEEEEECCCCcchhh
Confidence 35688999999865 34 599999999985210 1101 246666655433 36
Q ss_pred EeecCCccccCc
Q psy4551 164 DMPQPSVYQLNP 175 (321)
Q Consensus 164 ~V~~~~Lr~L~~ 175 (321)
.|+-+.|.+..+
T Consensus 75 WV~e~rllk~~e 86 (110)
T 3m9p_A 75 WAAEDHVLRDTD 86 (110)
T ss_dssp EEEGGGEEECCH
T ss_pred ccCHhhhhcCCH
Confidence 888877776544
No 68
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=43.88 E-value=12 Score=32.07 Aligned_cols=22 Identities=55% Similarity=0.966 Sum_probs=16.5
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..+++|++..+.|+.||||.|.
T Consensus 53 ~~g~~c~a~~~~d~~wyRa~V~ 74 (218)
T 2wac_A 53 KRGDLVAAQFTLDNQWYRAKVE 74 (218)
T ss_dssp CTTCEEEEECTTTCCEEEEEEE
T ss_pred CcCCEEEEEECCCCeEEEEEEE
Confidence 3566777778888999997554
No 69
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=42.64 E-value=21 Score=29.16 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=31.6
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEe
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDY 159 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDy 159 (321)
..++.|+++=.+| ++--++-|.|.++.. ..+++.|.|||-
T Consensus 3 ~~~e~GmlVW~K~-q~yPfWPAVVKSV~r-------------------------~ekkA~VL~Ie~ 42 (134)
T 3pmi_A 3 RSFEVGMLVWHKH-KKYPFWPAVVKSVRQ-------------------------RDKKASVLYIEG 42 (134)
T ss_dssp -CCCTTCEEEECC-TTSCCEEEEEEEEEG-------------------------GGTEEEEEECCS
T ss_pred cccccceEEEEEe-ccCCCcchheeeeee-------------------------ccceEEEEEEeC
Confidence 4688999999988 577788999999842 235899999984
No 70
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=41.67 E-value=24 Score=34.33 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=44.8
Q ss_pred CCCCEEEEEEEEEccCC-eEEEEEcCCchhHHHHHHHHHHHHHhhcCccc--c---cccccCCCCCEEEEEEccCCeEEE
Q psy4551 41 SSDGSLTVFMSAVANPD-RFWVQIMNDRAIELDQLVESMTDYYNQKANQE--T---HRLTEVKPGQIVAALLHLDQKWYR 114 (321)
Q Consensus 41 ~~g~~~~V~Vt~V~sp~-~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~--~---~~~~~~~~G~~caa~~~~d~~WyR 114 (321)
..+..+-+.|..+...+ .+-|+-.+++..- + ....|.-+.+.- . .+.....+|+.|.|.|++.-++||
T Consensus 403 ~~~~wi~~~~~~~~~~~~~y~v~d~~~~~~~-----~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~a~~p~tt~fy~ 476 (522)
T 3mp6_A 403 ADGEWIQCEVLKVVADGTRFEVRDPEPDELG-----N-SGKVYKCNRKELLLIPPGFPTKNYPPGTKVLARYPETTTFYP 476 (522)
T ss_dssp --CCEEEEEEEEEETTTTEEEEEECSCBTTB-----T-TCEEEEECGGGEEEECSSCCCCCCCTTCEEEEECTTCSEEEE
T ss_pred CCCCEEEEEEEEEeCCCCEEEEeCCCCCCCC-----C-CCeeEEccHHHEEECCCCCcccCCCCCCEEEEECCCCcceEe
Confidence 46788888887777544 5668777542110 0 001121111111 1 122457899999999998899999
Q ss_pred EEEEEec
Q psy4551 115 AQVMTVK 121 (321)
Q Consensus 115 a~V~~i~ 121 (321)
|.|....
T Consensus 477 a~v~~~~ 483 (522)
T 3mp6_A 477 AIVIGTK 483 (522)
T ss_dssp EEEEEEC
T ss_pred EEEecCC
Confidence 9999953
No 71
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=41.16 E-value=13 Score=32.70 Aligned_cols=21 Identities=38% Similarity=0.754 Sum_probs=16.2
Q ss_pred cCCceeeeeeecccceeeeeee
Q psy4551 121 KPGQIVAALLHLDQKWYRAQVM 142 (321)
Q Consensus 121 ~~~~~~~~~~~~~~~~~r~~v~ 142 (321)
..+++|++..+ |+.||||.|.
T Consensus 67 ~~G~~c~a~~~-d~~wyRa~V~ 87 (246)
T 2hqx_A 67 RRGEFCIAKFV-DGEWYRARVE 87 (246)
T ss_dssp CTTCEEEEECT-TSCEEEEEEE
T ss_pred CCCCEEEEEcC-CCCEEEEEEE
Confidence 35667888887 8999998665
No 72
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=40.43 E-value=46 Score=28.10 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=42.1
Q ss_pred cCCCCCEEEEEEccCCeEEEEEEEEecCCceeeee-eecccceeeeeeecccCCCCCeEEEEEEEeCCeE--EeecCCcc
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAAL-LHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSM--DMPQPSVY 171 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~-~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~--~V~~~~Lr 171 (321)
--++|+++=|+-...|.|+=|+|++|....-.... -++..+ ..+.+.-.+.|.|=||.... .++..++|
T Consensus 10 lYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~--------~~~~edviYhVkyddype~gvv~~~~~~iR 81 (161)
T 3db3_A 10 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSR--------PALEEDVIYHVKYDDYPENGVVQMNSRDVR 81 (161)
T ss_dssp SSCTTCEEEEECTTTCCEEEEEEEEEEEC-------------------------CCEEEEEEESSCGGGCEEEEEGGGEE
T ss_pred eEEecceeeeeccCCCcceEEEEEEEEecCCCCCCccccccc--------CCCcCceEEEEEeccCccCCeEecchhccc
Confidence 46789999999766799999999997532100000 000000 01123357889999996655 45566777
Q ss_pred ccC
Q psy4551 172 QLN 174 (321)
Q Consensus 172 ~L~ 174 (321)
+=-
T Consensus 82 pRA 84 (161)
T 3db3_A 82 ARA 84 (161)
T ss_dssp CCC
T ss_pred cce
Confidence 644
No 73
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=40.33 E-value=27 Score=29.22 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=50.1
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
...+..|++|-|+. ..--|+-|+|....... + .......+.|+|..-+....|+.++|.+
T Consensus 14 g~~f~~GDLVWaKv-kG~PwWPa~V~~~~~~~-------------k------~~~~~~~~~V~FFG~~~~awv~~~~L~p 73 (154)
T 3llr_A 14 GRGFGIGELVWGKL-RGFSWWPGRIVSWWMTG-------------R------SRAAEGTRWVMWFGDGKFSVVCVEKLMP 73 (154)
T ss_dssp SCCCCTTCEEEECC-TTSCCEEEEEECGGGTT-------------S------CCCCTTEEEEEETTTCCEEEEEGGGEEE
T ss_pred CCCCccCCEEEEec-CCCCCCCEEEecccccc-------------c------ccCCCCEEEEEEeCCCCEEEEcHHHCcc
Confidence 35689999999996 35579999999853110 0 0112358999999888999999999999
Q ss_pred cCcccccC
Q psy4551 173 LNPTFLGL 180 (321)
Q Consensus 173 L~~~f~~l 180 (321)
+.+.+..+
T Consensus 74 f~e~~e~f 81 (154)
T 3llr_A 74 LSSFCSAF 81 (154)
T ss_dssp GGGHHHHC
T ss_pred hhhhHHHH
Confidence 98765433
No 74
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=39.18 E-value=52 Score=26.80 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=38.2
Q ss_pred CccEEEEEeCCCC----------ccccHHHHHHHcCCccccCCCCCCCCCCCCCCCCCCccCCCCc
Q psy4551 238 PLPCVSLFDTSGE----------QDVNISQELISRGFAVSSKSGSELPDGRPNGNTSAGSNSSDSD 293 (321)
Q Consensus 238 ~~~~V~L~d~~~~----------~~~sIn~~LI~~GlA~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 293 (321)
.-+.+.|+|..+. ..-.|++.|.++||.+.+....+.+-....+..+.....+|-|
T Consensus 55 a~P~LvL~D~~G~e~E~I~Iekw~~d~I~efL~e~GF~rk~~~~~~~p~e~~~~p~~~~~~~~~~~ 120 (129)
T 2a2p_A 55 ADPELVLLSRNYQELERIPLSQMTRDEINALVQELGFYRKSAPEAQVPPEYLWAPAKPPEEASEHD 120 (129)
T ss_dssp CCCEEEEECSSSCCCEEEECSSSCHHHHHHHHHHHTCCBCSSTTCCCCGGGSSTTSCCCSTTTCCS
T ss_pred CCCEEEEecCCCCEEEEeecccCCHHHHHHHHHHcCCccccccccCCCHHHHhCCCCCccCCcccc
Confidence 3468999988764 2336999999999999977666666554555555555555444
No 75
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=37.12 E-value=95 Score=24.11 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=41.4
Q ss_pred cccCCCCCEEEEEEcc---CCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeec
Q psy4551 93 LTEVKPGQIVAALLHL---DQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQ 167 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~---d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~ 167 (321)
.....+|+-|.+.+.. .+.+|.|+|+++.... ..|. .+...+.|.|..+... +.|+-
T Consensus 17 ~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~---------~~~~---------~~~~~Y~VHY~GWn~rwDEWV~e 78 (101)
T 3m9q_A 17 TPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR---------NEHG---------LRFYEYKIHFQGWRPSYDRAVRA 78 (101)
T ss_dssp CCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE---------CTTS---------CEEEEEEEEETTSCGGGCEEECG
T ss_pred CCcccCCCEEEEEecCCCCCCcceEeEEEEEEecC---------Cccc---------cCceEEEEEeCCCCcCceeecCH
Confidence 3568899999997521 3789999999985210 0000 1112566777554443 78888
Q ss_pred CCccccCcc
Q psy4551 168 PSVYQLNPT 176 (321)
Q Consensus 168 ~~Lr~L~~~ 176 (321)
+.|++..+.
T Consensus 79 dRilk~~ee 87 (101)
T 3m9q_A 79 TVLLKDTEE 87 (101)
T ss_dssp GGEEECCHH
T ss_pred HHcccCCHH
Confidence 888776543
No 76
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=33.40 E-value=42 Score=27.61 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.2
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEec
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVK 121 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~ 121 (321)
..+.+|+.|.|.+ ...||-|+|+++.
T Consensus 8 ~~f~~gekvl~~h--g~llYeAKVl~v~ 33 (136)
T 2k3y_A 8 QEFALGGRVLAFH--GPLMYEAKILKIW 33 (136)
T ss_dssp GSCCTTSEEEEEC--SSCEEEEEEEEEE
T ss_pred cccCCCCEEEEEE--CCeeEEEEEEEEE
Confidence 3588999999975 7889999999975
No 77
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=32.84 E-value=10 Score=21.79 Aligned_cols=8 Identities=63% Similarity=1.830 Sum_probs=7.1
Q ss_pred Ccchhhhc
Q psy4551 312 GAWKDVWA 319 (321)
Q Consensus 312 ~~~~~~~~ 319 (321)
|+||..|.
T Consensus 1 gawknfws 8 (26)
T 2khf_A 1 GAWKNFWS 8 (26)
T ss_dssp CCHHHHHH
T ss_pred CcHHHHHH
Confidence 79999995
No 78
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=32.64 E-value=36 Score=28.03 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=46.3
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
......|++|-|+. ..--|+=|+|....... .......+.|+|..-+....|+..+|++
T Consensus 20 ~~~f~~GdlVwaK~-~g~p~WPa~V~~~~~~~--------------------~~~~~~~~~V~FfG~~~~awv~~~~l~~ 78 (153)
T 4fu6_A 20 TRDFKPGDLIFAKM-KGYPHWPARVDEVPDGA--------------------VKPPTNKLPIFFFGTHETAFLGPKDIFP 78 (153)
T ss_dssp GGGCCTTCEEEECC-TTSCCEEEEECCCC-----------------------CCCCTTCEEEEETTTCCEEEECGGGEEE
T ss_pred ccCCCCCCEEEEeC-CCCCCCCEEEeEchhhc--------------------cCCCCCEEEEEecCCCCeEEeCHHHccC
Confidence 35688999999997 23469999998743110 0112347999998777888999999998
Q ss_pred cCcccc
Q psy4551 173 LNPTFL 178 (321)
Q Consensus 173 L~~~f~ 178 (321)
+.+.+.
T Consensus 79 f~e~~~ 84 (153)
T 4fu6_A 79 YSENKE 84 (153)
T ss_dssp HHHHHH
T ss_pred hHhHHH
Confidence 876543
No 79
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=31.58 E-value=88 Score=26.82 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=41.2
Q ss_pred cccCCCCCEEEEEEc---cCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeec
Q psy4551 93 LTEVKPGQIVAALLH---LDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQ 167 (321)
Q Consensus 93 ~~~~~~G~~caa~~~---~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~ 167 (321)
...+.+|+.|||+-. .++.|--|+|+++.++ ...++|+=+|-... -.++.
T Consensus 42 ~~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~~-------------------------~~rYeV~D~d~eg~~~~~~s~ 96 (180)
T 3mea_A 42 DYVARPGDKVAARVKAVDGDEQWILAEVVSYSHA-------------------------TNKYEVDDIDEEGKERHTLSR 96 (180)
T ss_dssp TCCCCTTCEEEEEEECCC--EEEEEEEEEEEETT-------------------------TTEEEEEECCTTCCEEEEEEG
T ss_pred CcccCCCCEEEEEcCCCCCCccEEEEEEEEEcCC-------------------------CCEEEEecCCCCCceeEEeCH
Confidence 347899999999963 2358999999997431 23677776664332 47788
Q ss_pred CCccccCcc
Q psy4551 168 PSVYQLNPT 176 (321)
Q Consensus 168 ~~Lr~L~~~ 176 (321)
++|-+||..
T Consensus 97 ~~IIPLP~~ 105 (180)
T 3mea_A 97 RRVIPLPQW 105 (180)
T ss_dssp GGEEECCSB
T ss_pred HHEEECCCc
Confidence 888888853
No 80
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=31.51 E-value=48 Score=25.59 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=45.4
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeeccc-CCCCCeEEEEEEEeCCeEEeecCCccc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVS-DSTPPTLELYFVDYGDSMDMPQPSVYQ 172 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~-d~~~~~v~V~fIDyGn~~~V~~~~Lr~ 172 (321)
.....|++|-|+. ..--|+-|+|..-. .. . ..+++-. ......+.|+|.+-+....|+.++|.+
T Consensus 5 ~~~~~GdlVwaK~-~gyP~WPa~V~~p~--~~-----~-------~~~~~~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p 69 (109)
T 1h3z_A 5 VNYKPGMRVLTKM-SGFPWWPSMVVTES--KM-----T-------SVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTP 69 (109)
T ss_dssp CCCCTTCEEEEEE-TTEEEEEEEECCGG--GC-----C-------HHHHHTCCCSSSCEEEEEETTTTCCEEEEGGGEEE
T ss_pred ccCCCCCEEEEEe-CCcCCCCEEEcccH--HH-----h-------HHhhccCCCCCCCEEEEEEcCCCCEEEECHHHeee
Confidence 4578999999997 34469999998410 00 0 0000000 001358999999888889999999999
Q ss_pred cCcc
Q psy4551 173 LNPT 176 (321)
Q Consensus 173 L~~~ 176 (321)
+..+
T Consensus 70 ~~~~ 73 (109)
T 1h3z_A 70 LTSE 73 (109)
T ss_dssp CCHH
T ss_pred CCch
Confidence 9753
No 81
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=30.61 E-value=54 Score=22.11 Aligned_cols=23 Identities=26% Similarity=0.677 Sum_probs=18.8
Q ss_pred cCCCCCEEEEEEccCCeEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V 117 (321)
.++.|+++.+.-..++.|++|++
T Consensus 39 sf~~Gd~i~v~~~~~~~Ww~g~~ 61 (62)
T 1g2b_A 39 TMKKGDILTLLNSTNKDWWKVEV 61 (62)
T ss_dssp CBCTTCEEEEEECCSSSEEEEEE
T ss_pred CCCCCCEEEEEEecCCCEEEEEe
Confidence 47899999887666788999975
No 82
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=29.08 E-value=1e+02 Score=25.83 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=46.1
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeee---------ecc-cce---eeeeeecccCCCCCeEEEEEEEe-
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALL---------HLD-QKW---YRAQVMTVSDSTPPTLELYFVDY- 159 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~---------~~~-~~~---~r~~v~~v~d~~~~~v~V~fIDy- 159 (321)
..+..|++|-|+. ..--||=|.|.. |+.....+. +.+ .++ +| .......+.|+|+|-
T Consensus 35 ~~~~pgdlVWAK~-~GyPwwPa~Iid--p~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~------~~~~~~~ylV~FFd~~ 105 (158)
T 3pfs_A 35 GDLEPLELVWAKC-RGYPSYPALIID--PKMPREGLLHNGVPIPVPPLDVLKLGEQKQ------AEAGEKLFLVLFFDNK 105 (158)
T ss_dssp SCCCTTCEEEEEC-TTSCEEEEEEEC--TTSCTTCEEETTEEECCCCHHHHHHHHHHH------HHHTSCEEEEEECSTT
T ss_pred CCCCCCCEEEEec-CCCCCCCEEEcC--CCCccccccccccccCCChHHHHhhccccc------ccCCCCEEEEEEcCCC
Confidence 4689999999997 344699999976 332100000 000 000 00 001235899999996
Q ss_pred CCeEEeecCCccccCc
Q psy4551 160 GDSMDMPQPSVYQLNP 175 (321)
Q Consensus 160 Gn~~~V~~~~Lr~L~~ 175 (321)
.....|+.++|++|-.
T Consensus 106 ~t~aWV~~~~L~Pl~~ 121 (158)
T 3pfs_A 106 RTWQWLPRDKVLPLGV 121 (158)
T ss_dssp CCEEEEEGGGEEECSS
T ss_pred CceEeeccccEeecCC
Confidence 5788999999999963
No 83
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=28.10 E-value=63 Score=22.54 Aligned_cols=25 Identities=24% Similarity=0.528 Sum_probs=20.0
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVM 118 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~ 118 (321)
-.++.|+++.+.-..++.|++|++.
T Consensus 23 Ls~~~Gd~i~v~~~~~~gWw~g~~~ 47 (65)
T 2lj0_A 23 LELRDGDIVDVMEKCDDGWFVGTSR 47 (65)
T ss_dssp CCBCTTCEEEEEEECTTSEEEEEET
T ss_pred cCCCCCCEEEEeEeCCCCEEEEEEC
Confidence 3589999998876567889999864
No 84
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=26.23 E-value=76 Score=21.72 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=20.0
Q ss_pred cCCCCCEEEEEEccCCeEEEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQVMT 119 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V~~ 119 (321)
.++.|+++.+.-..++.|++++...
T Consensus 25 sf~~Gd~i~v~~~~~~~Ww~g~~~~ 49 (68)
T 1tg0_A 25 NFEKDQEIIVTSVEDAEWYFGEYQD 49 (68)
T ss_dssp CBCTTCEEEEEEECSSSEEEEEEEC
T ss_pred CCCCCCEEEEEEecCCCeEEEEECC
Confidence 4789999888765678899998764
No 85
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=25.35 E-value=79 Score=20.65 Aligned_cols=25 Identities=12% Similarity=0.301 Sum_probs=19.6
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVM 118 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~ 118 (321)
-.++.|+++.+.-..++.|++|+..
T Consensus 18 Ls~~~Gd~i~v~~~~~~gW~~g~~~ 42 (58)
T 1zuy_A 18 LPLKKGDVIYITREEPSGWSLGKLL 42 (58)
T ss_dssp CCBCTTCEEEEEEECTTSEEEEEES
T ss_pred CCCCCCCEEEEEEecCCCeEEEEEC
Confidence 3578999998876557789999865
No 86
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.23 E-value=76 Score=25.42 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=46.8
Q ss_pred cccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeC-CeEEeecCCcc
Q psy4551 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYG-DSMDMPQPSVY 171 (321)
Q Consensus 93 ~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyG-n~~~V~~~~Lr 171 (321)
......|++|-|+. ..--|+-|+|....... .+++.. .....+.|+|.+-+ ....|+.++|.
T Consensus 20 ~~~~~~GdlVwaK~-~g~P~WPa~V~~~~~~~---------------~~~~~~-~~~~~~~V~FFg~~~~~aWv~~~~l~ 82 (134)
T 2gfu_A 20 SSDFSPGDLVWAKM-EGYPWWPSLVYNHPFDG---------------TFIREK-GKSVRVHVQFFDDSPTRGWVSKRLLK 82 (134)
T ss_dssp SCCCCTTSEEEECC-TTSCCEEEECCCCSSTT---------------CCEEES-SSCEEEEEEECSSSCEEEEECGGGEE
T ss_pred CCCCCCCCEEEEee-cCCCCCCeeecchhhhh---------------hhhhcc-CCCceEEEEECCCCCceEEECHHHcc
Confidence 35689999999996 34569999999852111 000000 11237889987653 56899999999
Q ss_pred ccCcccc
Q psy4551 172 QLNPTFL 178 (321)
Q Consensus 172 ~L~~~f~ 178 (321)
++.....
T Consensus 83 pf~~~~~ 89 (134)
T 2gfu_A 83 PYTGSKS 89 (134)
T ss_dssp ESCCTTS
T ss_pred cCcchhH
Confidence 9998764
No 87
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=25.01 E-value=78 Score=20.82 Aligned_cols=24 Identities=21% Similarity=0.580 Sum_probs=19.2
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.++.|+++.+.-..++.|++|+.
T Consensus 18 Ls~~~Gd~i~v~~~~~~~Ww~g~~ 41 (58)
T 2bz8_A 18 LTISVGEIITNIRKEDGGWWEGQI 41 (58)
T ss_dssp CCBCTTCEEEEEECCTTTEEEEEE
T ss_pred eeECCCCEEEEEEeCCCCEEEEEE
Confidence 357899999887656788999985
No 88
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=24.86 E-value=86 Score=20.95 Aligned_cols=26 Identities=23% Similarity=0.574 Sum_probs=20.7
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMT 119 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~ 119 (321)
-.++.|+++.+.-..++.|++|+...
T Consensus 18 Ls~~~Gd~i~v~~~~~~~Ww~g~~~~ 43 (65)
T 2oaw_A 18 VTMKKGDILTLLNSTNKDWWKVEVKI 43 (65)
T ss_dssp CCBCTTCEEEEEECCSSSEEEEEEEE
T ss_pred CCCCCCCEEEEEEcCCCCEEEEEEcc
Confidence 35789999988765578899999773
No 89
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=24.61 E-value=60 Score=25.17 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=44.8
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEEEec--CCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCcc
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVMTVK--PGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVY 171 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~~i~--~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr 171 (321)
..+..|++|.|+. ..--|+-|+|..-. |.. |.+- ......+.|+|.+-+....|+.++|.
T Consensus 4 ~~~~~GdlVwaK~-~gyP~WPa~V~~~~~~p~~----------------v~~~-~~~~~~~~V~FFg~~~~aWv~~~~l~ 65 (108)
T 2l89_A 4 DRLNFGDRILVKA-PGYPWWPALLLRRKETKDS----------------LNTN-SSFNVLYKVLFFPDFNFAWVKRNSVK 65 (108)
T ss_dssp CCCCTTEEEEEEC-SSSCEEEEEEEEEEEEESS----------------SCSS-SCEEEEEEEEETTTTEEEEECGGGEE
T ss_pred CcccCCCEEEEEe-CCcCCCceEecCcccCcHH----------------Hhhc-cCCCCeEEEEECCCCCEEEEchhhce
Confidence 3578999999996 24469999998631 110 0000 01124789999887878899999999
Q ss_pred ccCcc
Q psy4551 172 QLNPT 176 (321)
Q Consensus 172 ~L~~~ 176 (321)
++..+
T Consensus 66 p~~~~ 70 (108)
T 2l89_A 66 PLLDS 70 (108)
T ss_dssp ECCHH
T ss_pred eCCHH
Confidence 99853
No 90
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=24.57 E-value=81 Score=20.99 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=18.8
Q ss_pred cCCCCCEEEEEEccCCeEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V 117 (321)
.++.|+++.+.-..++.|++|+.
T Consensus 21 s~~~Gd~i~v~~~~~~~W~~g~~ 43 (61)
T 1y0m_A 21 TFTKSAIIQNVEKQDGGWWRGDY 43 (61)
T ss_dssp CBCTTCEEEEEECCSSSEEEEEE
T ss_pred CCcCCCEEEEEEecCCCEEEEEE
Confidence 57899999887655788999975
No 91
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=24.40 E-value=83 Score=20.68 Aligned_cols=24 Identities=8% Similarity=0.347 Sum_probs=19.4
Q ss_pred cCCCCCEEEEEEccCCeEEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQVM 118 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V~ 118 (321)
.++.|+++.+.-..++.|++|+..
T Consensus 18 s~~~Gd~i~v~~~~~~~Ww~g~~~ 41 (58)
T 1jo8_A 18 TFVENDKIINIEFVDDDWWLGELE 41 (58)
T ss_dssp CBCTTCEEEEEECCSSSEEEEEET
T ss_pred ccCCCCEEEEEEecCCCcEEEEEC
Confidence 478999998876567889999865
No 92
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=23.55 E-value=2.4e+02 Score=21.19 Aligned_cols=46 Identities=17% Similarity=0.100 Sum_probs=31.7
Q ss_pred CCCCEEEEEEccCCeEEEEEEEEecCCceeeee--eecccceeeeeeec
Q psy4551 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAAL--LHLDQKWYRAQVMT 143 (321)
Q Consensus 97 ~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~--~~~~~~~~r~~v~~ 143 (321)
-.|.-+.+.. .||+-|+|.+..+.|.....++ ...+++|.|-.|+.
T Consensus 15 li~KeV~V~l-~dg~~y~G~l~tvDp~s~sIvL~n~~~~~~~~~~iI~G 62 (86)
T 1y96_A 15 YIYKEVRVTA-SEKNEYKGWVLTTDPVSANIVLVNFLEDGSMSVTGIMG 62 (86)
T ss_dssp TTTCEEEEEE-TTTEEEEEEEEEECTTTCCEEEEEECTTSCEEEEEECG
T ss_pred hcCCEEEEEE-cCCCEEEEEEEEECCCceEEEEeecccCCeEEEEEEec
Confidence 3566676666 4999999999999876654444 23467777666653
No 93
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=23.29 E-value=90 Score=20.40 Aligned_cols=24 Identities=13% Similarity=0.490 Sum_probs=19.3
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.++.|+++.+.-..++.|++++.
T Consensus 19 Ls~~~Gd~i~v~~~~~~~Ww~g~~ 42 (58)
T 2vwf_A 19 LGFRRGDFIHVMDNSDPNWWKGAC 42 (58)
T ss_dssp CCBCTTCEEEEEECCSSSEEEEEE
T ss_pred cCCCCCCEEEEEEcCCCCEEEEEE
Confidence 357899999887655788999987
No 94
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=23.29 E-value=82 Score=20.59 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=18.1
Q ss_pred cCCCCCEEEEEEccCCeEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQ 116 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~ 116 (321)
.++.|+++.+.-..++.|++++
T Consensus 19 s~~~Gd~i~v~~~~~~~Ww~g~ 40 (57)
T 1cka_A 19 PFKKGDILRIRDKPEEQWWNAE 40 (57)
T ss_dssp CBCTTCEEEEEECSSSSEEEEE
T ss_pred CCCCCCEEEEEEecCCCcEEEE
Confidence 4789999988765678899998
No 95
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=22.94 E-value=90 Score=20.86 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=19.6
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVM 118 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~ 118 (321)
-.++.|+++.+.-..++.|++|+..
T Consensus 22 Ls~~~Gd~i~v~~~~~~~Ww~g~~~ 46 (62)
T 1uj0_A 22 LTFKHGELITVLDDSDANWWQGENH 46 (62)
T ss_dssp CCBCTTCEEEEEECCSSSEEEEEET
T ss_pred cCCCCCCEEEEEEeCCCCEEEEEEC
Confidence 3478999998876567889999854
No 96
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=22.60 E-value=82 Score=21.54 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=18.2
Q ss_pred cCCCCCEEEEEEccCCeEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQ 116 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~ 116 (321)
.++.|+++.+.-..++.|++|+
T Consensus 21 sf~~Gd~i~v~~~~~~~Ww~g~ 42 (65)
T 1b07_A 21 PFKKGDILRIRDKPEEQWWNAE 42 (65)
T ss_dssp CBCTTCEEEEEECSSSSEEEEE
T ss_pred CCcCCCEEEEEEecCCCeEEEE
Confidence 4789999988765678899997
No 97
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=22.38 E-value=95 Score=20.38 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=19.1
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.++.|+++.+.-..++.|++++.
T Consensus 19 Ls~~~Gd~i~v~~~~~~~Ww~g~~ 42 (58)
T 1zx6_A 19 LGLKPGDKVQLLEKLSPEWYKGSC 42 (58)
T ss_dssp CCBCTTCEEEEEEECSSSEEEEEE
T ss_pred ccCCCCCEEEEEEecCCCEEEEEE
Confidence 357899999887655788999985
No 98
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=22.34 E-value=97 Score=20.23 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=18.9
Q ss_pred cCCCCCEEEEEEccCCeEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V 117 (321)
.++.|+++.+.-..++.|++|+.
T Consensus 20 s~~~Gd~i~v~~~~~~~Ww~g~~ 42 (58)
T 1sem_A 20 AFKRGDVITLINKDDPNWWEGQL 42 (58)
T ss_dssp CBCTTCEEEEEECSSSSEEEEEE
T ss_pred CCCCCCEEEEEEecCCCEEEEEE
Confidence 57899999887666778999986
No 99
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=22.12 E-value=85 Score=21.38 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.2
Q ss_pred cCCCCCEEEEEEccCCeEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQ 116 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~ 116 (321)
.+..|+++.+.-..++.|++|+
T Consensus 20 s~~~Gd~i~v~~~~~~~Ww~g~ 41 (67)
T 1gl5_A 20 RLERGQEYIILEKNDLHWWRAR 41 (67)
T ss_dssp CBCTTCEEEEEECSSSSEEEEE
T ss_pred cCCcCCEEEEEEccCCCcEEEE
Confidence 4789999988765678899997
No 100
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=21.85 E-value=89 Score=20.83 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.4
Q ss_pred cCCCCCEEEEEEccCCeEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V 117 (321)
.++.|+++.+.-..++.|++++-
T Consensus 21 s~~~Gd~i~v~~~~~~~W~~g~~ 43 (62)
T 2fpe_A 21 ELEVDDPLLVELQAEDYWYEAYN 43 (62)
T ss_dssp CBCTTCEEEEEEECTTSEEEEEE
T ss_pred cCCCCCEEEEEEecCCCEEEEEE
Confidence 47899999886556788999974
No 101
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=21.76 E-value=95 Score=21.46 Aligned_cols=24 Identities=25% Similarity=0.648 Sum_probs=19.1
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.+..|+++.+.-..++.|++|+.
T Consensus 20 Lsf~~Gd~i~v~~~~~~~Ww~g~~ 43 (68)
T 2ew3_A 20 LGFKEGDIITLTNQIDENWYEGMI 43 (68)
T ss_dssp CCBCTTCEEEEEEESSSSEEEEEE
T ss_pred cCCCCCCEEEEEEecCCCEEEEEE
Confidence 357899999887656788999985
No 102
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=21.29 E-value=1e+02 Score=20.42 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=19.0
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.++.|+++.+.-..++.|++++.
T Consensus 21 Ls~~~Gd~i~v~~~~~~~W~~g~~ 44 (60)
T 1w70_A 21 LNFKAGDVIFLLSRINKDWLEGTV 44 (60)
T ss_dssp CCBCTTCEEEEEEECSSSEEEEEE
T ss_pred ccCCCCCEEEEEEeCCCCeEEEEE
Confidence 357899998887655788999984
No 103
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=21.19 E-value=1.1e+02 Score=20.09 Aligned_cols=24 Identities=17% Similarity=0.524 Sum_probs=19.2
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.++.|+++.+.-..++.|++|+.
T Consensus 18 Ls~~~Gd~i~v~~~~~~~Ww~g~~ 41 (58)
T 1uti_A 18 LGFRSGEVVEVLDSSNPSWWTGRL 41 (58)
T ss_dssp CCBCTTCEEEEEECCSSSEEEEEE
T ss_pred CCCCCCCEEEEEEECCCCEEEEEE
Confidence 357899999887655788999985
No 104
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=21.01 E-value=97 Score=21.99 Aligned_cols=23 Identities=26% Similarity=0.677 Sum_probs=18.8
Q ss_pred cCCCCCEEEEEEccCCeEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V 117 (321)
.++.|+++.+.-..++.|++++.
T Consensus 20 s~~~Gd~i~v~~~~~~~Ww~g~~ 42 (80)
T 2pqh_A 20 TMKKGDILTLLNSTNKDWWKVEV 42 (80)
T ss_dssp CBCTTCEEEEEECCSSSEEEEEE
T ss_pred CCCCCCEEEEEEecCCCEEEEEE
Confidence 47899999887655778999986
No 105
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=20.93 E-value=1e+02 Score=20.56 Aligned_cols=24 Identities=21% Similarity=0.614 Sum_probs=18.8
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.+..|+++.+.-..++.|++++.
T Consensus 26 Ls~~~Gd~i~v~~~~~~~Ww~g~~ 49 (65)
T 3ulr_B 26 ISFDPDDIITNIEMIDDGWWRGVC 49 (65)
T ss_dssp CCBCTTCEEEEEECCSSSEEEEEE
T ss_pred eeEecCCEEEEEEecCCCEEEEEE
Confidence 357899998887655778999984
No 106
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=20.92 E-value=92 Score=21.45 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.5
Q ss_pred cCCCCCEEEEEEccCCeEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V 117 (321)
.++.|+++.+.-..++.|++++.
T Consensus 24 s~~~Gd~i~v~~~~~~gW~~g~~ 46 (71)
T 2fpf_A 24 ELEVDDPLLVELQAEDYWYEAYN 46 (71)
T ss_dssp CBCTTCEEEEEEECTTSEEEEEE
T ss_pred cCcCCcEEEEeEecCCCEEEEEE
Confidence 47899999887656788999984
No 107
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=20.91 E-value=1e+02 Score=21.00 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=19.3
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQVM 118 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V~ 118 (321)
-.++.|+++.+.-..++.|++|+..
T Consensus 20 Ls~~~Gd~i~v~~~~~~~W~~g~~~ 44 (69)
T 1ruw_A 20 LPLKKGDIVFISRDEPSGWSLAKLL 44 (69)
T ss_dssp CCBCTTCEEEEEEECTTSEEEEEET
T ss_pred ccCCCCCEEEEEEecCCCeEEEEEC
Confidence 3578999998876557789999855
No 108
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=20.82 E-value=1.1e+02 Score=19.92 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=19.0
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.++.|+++.+.-..++.|++++.
T Consensus 20 Ls~~~Gd~i~v~~~~~~~W~~g~~ 43 (58)
T 2drm_A 20 LTFKEGDTIIVHQKDPAGWWEGEL 43 (58)
T ss_dssp CCBCTTCEEEEEECCTTSEEEEEE
T ss_pred cCCCCCCEEEEEEecCCCEEEEEE
Confidence 347899999887655688999986
No 109
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=20.63 E-value=1.1e+02 Score=20.19 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=19.0
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.+..|+++.+.-..++.|++++.
T Consensus 23 Ls~~~Gd~i~v~~~~~~~Ww~~~~ 46 (62)
T 3ngp_A 23 LTVKKGDILTLLNSTNKDWWKIEV 46 (62)
T ss_dssp CCBCTTCEEEEEECCSSSEEEEEE
T ss_pred ccCCCCCEEEEeEecCCCeEEEEE
Confidence 358899999887655688999984
No 110
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=20.62 E-value=1.1e+02 Score=20.11 Aligned_cols=23 Identities=9% Similarity=0.325 Sum_probs=18.5
Q ss_pred cCCCCCEEEEEEccCCeEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V 117 (321)
.++.|+++.+.-..++.|++++.
T Consensus 22 s~~~Gd~i~v~~~~~~~Ww~g~~ 44 (59)
T 2g6f_X 22 SFSKGDVIHVTRVEEGGWWEGTH 44 (59)
T ss_dssp CBCTTCEEEEEEECTTSEEEEEE
T ss_pred CCCCCCEEEEEEecCCCEEEEEE
Confidence 47899998877656788999984
No 111
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=20.58 E-value=1e+02 Score=20.94 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=18.2
Q ss_pred cCCCCCEEEEEEccCCeEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V 117 (321)
.++.|+++.+.-..++.|+++..
T Consensus 21 sf~~Gd~i~v~~~~~~~Ww~g~~ 43 (67)
T 2bzy_A 21 ALEVGDIVKVTRMNINGQWEGEV 43 (67)
T ss_dssp CBCTTCEEEEEEECSSSEEEEEE
T ss_pred ccCCCCEEEEEEecCCCeEEEEe
Confidence 47899999887656788999954
No 112
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=20.48 E-value=98 Score=20.89 Aligned_cols=24 Identities=13% Similarity=0.309 Sum_probs=18.9
Q ss_pred cCCCCCEEEEEEccCCeEEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQVM 118 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V~ 118 (321)
.++.|+++.+.-..++.|++|+..
T Consensus 24 s~~~Gd~i~v~~~~~~gW~~g~~~ 47 (65)
T 2j05_A 24 SFLKGDMFIVHNELEDGWMWVTNL 47 (65)
T ss_dssp CBCTTCEEEEEEECTTSEEEEEET
T ss_pred cCCCCCEEEEeEecCCCEEEEEEC
Confidence 478999998876567889999743
No 113
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=20.47 E-value=1e+02 Score=20.92 Aligned_cols=24 Identities=13% Similarity=0.567 Sum_probs=18.9
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.+..|+++.+.-..++.|++|+.
T Consensus 23 Ls~~~Gd~i~v~~~~~~~Ww~g~~ 46 (69)
T 4esr_A 23 LTIHRGDIIRVFFKDNEDWWYGSI 46 (69)
T ss_dssp CCBCTTCEEEEEEECSSSEEEEEE
T ss_pred CCCCCCCEEEEEEecCCCeEEEEe
Confidence 357899998877655778999975
No 114
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.45 E-value=1e+02 Score=21.75 Aligned_cols=24 Identities=21% Similarity=0.614 Sum_probs=18.8
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.++.|+++.+.-..++.|++++.
T Consensus 34 Ls~~~Gd~i~v~~~~~~~Ww~g~~ 57 (79)
T 1x69_A 34 ISFDPDDIITNIEMIDDGWWRGVC 57 (79)
T ss_dssp CCCCTTCEEEEEEECSSSEEEEEE
T ss_pred cCcCCCCEEEEeEecCCCeEEEEE
Confidence 347899998887655788999984
No 115
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=20.45 E-value=1.1e+02 Score=20.77 Aligned_cols=24 Identities=21% Similarity=0.671 Sum_probs=18.9
Q ss_pred ccCCCCCEEEEEEccCCeEEEEEE
Q psy4551 94 TEVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 94 ~~~~~G~~caa~~~~d~~WyRa~V 117 (321)
-.++.|+++.+.-..++.|++++.
T Consensus 24 Ls~~~Gd~i~v~~~~~~~Ww~g~~ 47 (68)
T 2djq_A 24 LKFNKGDVILLRRQLDENWYQGEI 47 (68)
T ss_dssp CCCCTTCEEEEEECCCSSEEEEEE
T ss_pred ccCCCCCEEEEEEecCCCEEEEEE
Confidence 347899999887655788999984
No 116
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=20.33 E-value=92 Score=21.27 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=18.2
Q ss_pred cCCCCCEEEEEEccCCeEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V 117 (321)
.++.|+++.+.-..++.|++|..
T Consensus 26 s~~~Gd~i~v~~~~~~gWw~g~~ 48 (67)
T 2eyx_A 26 ALEVGELVKVTKINVSGQWEGEC 48 (67)
T ss_dssp CBCSSEEEEEEEECTTSEEEEEE
T ss_pred ccCCCCEEEEEEecCCCEEEEEE
Confidence 47899999887656788999954
No 117
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=20.05 E-value=2.6e+02 Score=20.80 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=39.6
Q ss_pred ccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCe--EEeecC-
Q psy4551 92 RLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS--MDMPQP- 168 (321)
Q Consensus 92 ~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~--~~V~~~- 168 (321)
+....++|+-+=|.. ..+.||=|+|+.+.. .+..+.|+|-.+... +.++.+
T Consensus 16 ~~~~F~vGmkLEA~D-~~~~~~~a~i~~v~~-------------------------~~~~v~VHfdGW~~~yDeWv~~dS 69 (88)
T 2eqm_A 16 PGITFEIGARLEALD-YLQKWYPSRIEKIDY-------------------------EEGKMLVHFERWSHRYDEWIYWDS 69 (88)
T ss_dssp SSCCCCSSCEEEEEC-TTSCEEEEEEEEEET-------------------------TTTEEEEEESSSTTTEEEEEETTS
T ss_pred CcCcCCCCCEEEEEc-CCCCeeEEEEEEEec-------------------------cCCEEEEEECCCCCcccEEeeCCC
Confidence 345688999997764 357899999998632 123788998766654 577766
Q ss_pred -CccccC
Q psy4551 169 -SVYQLN 174 (321)
Q Consensus 169 -~Lr~L~ 174 (321)
+|+|+-
T Consensus 70 ~~I~P~g 76 (88)
T 2eqm_A 70 NRLRPLE 76 (88)
T ss_dssp CCEECCC
T ss_pred CcEeccc
Confidence 666554
No 118
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=20.03 E-value=1.1e+02 Score=21.29 Aligned_cols=23 Identities=17% Similarity=0.651 Sum_probs=18.7
Q ss_pred cCCCCCEEEEEEccCCeEEEEEE
Q psy4551 95 EVKPGQIVAALLHLDQKWYRAQV 117 (321)
Q Consensus 95 ~~~~G~~caa~~~~d~~WyRa~V 117 (321)
.++.|+++.+.-..++.|++++.
T Consensus 31 s~~~Gd~i~v~~~~~~~W~~g~~ 53 (73)
T 3c0c_A 31 GFREGDLITLTNQIDENWYEGML 53 (73)
T ss_dssp CBCTTCEEEEEEECSSSEEEEEE
T ss_pred cCcCCCEEEEEEecCCCEEEEEE
Confidence 47899999887656788999985
Done!