RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4551
(321 letters)
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation,
transcription; 1.80A {Drosophila melanogaster} PDB:
3nth_A* 3nti_A*
Length = 169
Score = 125 bits (315), Expect = 2e-35
Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 51/213 (23%)
Query: 48 VFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLH 107
+ P F+VQ+ +D L+Q+ + + D Q+ +++K G + A
Sbjct: 6 CVVVQFDGPMSFYVQMESDVP-ALEQMTDKLLDAE-----QDLPAFSDLKEGALCVAQFP 59
Query: 108 LDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQ 167
D+ +YRAQ+ V E++F+D+G++ Q
Sbjct: 60 EDEVFYRAQIRKVLDDGKC--------------------------EVHFIDFGNNAVTQQ 93
Query: 168 PSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYK 227
QL + C L + F D + + + K
Sbjct: 94 --FRQLPEELAKPARYSRHCELDASTI--SKCDAALLQSFIDTRF---SETFQVEILATK 146
Query: 228 ETSTDLRSGSPLPCVSLFDTSGEQDVNISQELI 260
T T V LF S NIS++L
Sbjct: 147 GTGT--------HVVRLFYQS----KNISEKLQ 167
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain,
tudor P100, SND1, methylated arginine, SDMA, splicing;
2.10A {Drosophila melanogaster}
Length = 218
Score = 126 bits (318), Expect = 2e-35
Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 44/227 (19%)
Query: 48 VFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLH 107
V ++ + F+ Q + + +L+ L+ + + N K G +VAA
Sbjct: 7 VIVTEITETLTFFAQSVESGS-KLESLMSKLHADFQS--NPPIAGSYTPKRGDLVAAQFT 63
Query: 108 LDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQ 167
LD +WYRA+V V+ + ++DYG+ +P
Sbjct: 64 LDNQWYRAKVERVQGSNA---------------------------TVLYIDYGNKETLPT 96
Query: 168 PSVYQLNPTFLGLRFQAIECSLANVR-PVGDVWSEEAISCFEDLTHVAQWKVLLARVESY 226
+ L P F + A E +LA V P + EEA+ F + + VE
Sbjct: 97 NRLAALPPAFSSEKPYATEYALALVALPTDNEDKEEALRAFSEDV---LNHKVQLNVELK 153
Query: 227 KETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSKSGSE 273
S +L D + + D ++L++ G ++ + G
Sbjct: 154 VTGSP--------NLATLRDPTTKVDFG--KQLVAEGLVLAEQRGER 190
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain,
proteolytic fragment, PSI, structural genomics; 1.42A
{Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A*
3omg_A* 2o4x_A 2e6n_A 2o4x_B
Length = 246
Score = 118 bits (296), Expect = 8e-32
Identities = 44/235 (18%), Positives = 80/235 (34%), Gaps = 48/235 (20%)
Query: 46 LTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAAL 105
VF++ + + F+VQ + + +L+E+M + + + G+ A
Sbjct: 19 KPVFVTEITDDLHFYVQDVETGT-QFQKLMENMRNDIAS--HPPVEGSYAPRRGEFCIAK 75
Query: 106 LHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDM 165
+D +WYRA+V V P + ++++DYG+ +
Sbjct: 76 -------------------------FVDGEWYRARVEKVES--PAKIHVFYIDYGNREVL 108
Query: 166 PQPSVYQLNPTFL--GLRFQAIECSLANVR-PVGDVWSEEAISCFEDLTHVAQWKVLLAR 222
P + L+P F L QA E + A ++ P D +A+ L
Sbjct: 109 PSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQ---NTQCLLN 165
Query: 223 VESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFA-VSSKSGSELPD 276
VE P V+L + DV L+ G V + +
Sbjct: 166 VEHLSA---------GCPHVTLQFADSKGDVG--LGLVKEGLVMVEVRKEKQFQK 209
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal
nuclease OB fold, tudor domain, cytoplasm, HOST-virus
interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Length = 570
Score = 116 bits (292), Expect = 2e-29
Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 47/222 (21%)
Query: 48 VFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLH 107
VF++ + + F+VQ + + +L++L+E+M + + + G+ A
Sbjct: 367 VFVTEITDDLHFYVQDV-ETGTQLEKLMENMRNDIAS--HPPVEGSYAPRRGEFCIAK-F 422
Query: 108 LDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQ 167
+D +WYRA+V V+ + ++++DYG+ +P
Sbjct: 423 VDGEWYRARVEKVESPAKI--------------------------HVFYIDYGNREVLPS 456
Query: 168 PSVYQLNPTFL--GLRFQAIECSLANVR-PVGDVWSEEAISCFEDLTHVAQWKVLLARVE 224
+ L+P F L QA E + A ++ P D +A+ Q L VE
Sbjct: 457 TRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDI---QNTQCLLNVE 513
Query: 225 SYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAV 266
P V+L + DV L+ G +
Sbjct: 514 HLSAGC---------PHVTLQFADSKGDVG--LGLVKEGLVM 544
Score = 35.2 bits (80), Expect = 0.027
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 156 FVDYGDSMDMPQPS-VYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVA 214
+V G + + P + G+ +L + G+ +SEEA ++L
Sbjct: 215 YVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQR 274
Query: 215 QWKVLLARVESYKETSTDLRSGSPLPCVSL 244
+ +V + ++ L V L
Sbjct: 275 EVEVEVESMDKAGNFIGWLHIDGANLSVLL 304
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.34.9.1
Length = 110
Score = 93.7 bits (233), Expect = 4e-24
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 30/132 (22%)
Query: 65 NDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQ 124
+ R+++LD+LV MT +Y ++ V G IVAA L + WYRA+V+
Sbjct: 6 SGRSLQLDKLVNEMTQHYENSVPEDL----TVHVGDIVAAPLPTNGSWYRARVLGTLENG 61
Query: 125 IVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQA 184
+ +LYFVD+GD+ D P + L FL L FQA
Sbjct: 62 NL--------------------------DLYFVDFGDNGDCPLKDLRALRSDFLSLPFQA 95
Query: 185 IECSLANVRPVG 196
IECSLA +
Sbjct: 96 IECSLARIASGP 107
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics,
structural genomics consortium, SGC, alternative
splicing, RNA-binding; 1.75A {Homo sapiens}
Length = 94
Score = 87.2 bits (216), Expect = 9e-22
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 30/122 (24%)
Query: 67 RAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIV 126
R+++LD+LV MT +Y ++ V G IVAA L + WYRA+V+ +
Sbjct: 3 RSLQLDKLVNEMTQHYENSVPEDL----TVHVGDIVAAPLPTNGSWYRARVLGTLENGNL 58
Query: 127 AALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIE 186
+LYFVD+GD+ D P + L FL L FQAIE
Sbjct: 59 --------------------------DLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIE 92
Query: 187 CS 188
CS
Sbjct: 93 CS 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 2e-08
Identities = 45/312 (14%), Positives = 90/312 (28%), Gaps = 84/312 (26%)
Query: 5 ISKRSPYRSLKNQNQAPLEPLSV----QESELRAEKLISTSSDGSLTVF-M--------- 50
I +R L N NQ +V +LR + L+ ++ + +
Sbjct: 113 IEQRDR---LYNDNQ-VFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 51 SAVANPDR---------FWVQIMNDRAIE-----LDQLVESMTDYYNQKANQET---HRL 93
V + FW+ + N + E L +L+ + + +++ + R+
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 94 TEVKPG--------QIVAALLHLDQKW---------YRAQV-MTVKPGQIVAALLHLDQK 135
++ LL L ++ +T + Q+ L
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 136 WYRAQVMTVSDSTPPTLELYFVDY--GDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVR 193
+++ + L + Y D+P V NP L + I ++R
Sbjct: 288 HISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLP-REVLTTNPRRLSI----IA---ESIR 338
Query: 194 PVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKE-TSTDLRSGSPLPCVSLFDTSG--E 250
W ++ HV K+ S + R +FD
Sbjct: 339 DGLATW--------DNWKHVNCDKLTTIIESSLNVLEPAEYRK--------MFDRLSVFP 382
Query: 251 QDVNISQELISR 262
+I L+S
Sbjct: 383 PSAHIPTILLSL 394
Score = 46.8 bits (110), Expect = 6e-06
Identities = 39/239 (16%), Positives = 76/239 (31%), Gaps = 63/239 (26%)
Query: 7 KRSPYRSLKNQNQAPLEPLSVQESELRAEKLISTSSDGSLTVFMSAVANP----DRFWVQ 62
K L ++ L L +E R K+ L+VF + P W
Sbjct: 348 KHVNCDKLTTIIESSLNVLE--PAEYR--KMFD-----RLSVFPPSAHIPTILLSLIWFD 398
Query: 63 IMNDRAIELDQLVESMTDY--YNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTV 120
++ ++ +V + Y ++ + T + P ++L+ + ++
Sbjct: 399 VIKS---DVMVVVNKLHKYSLVEKQPKESTISI----PS------IYLE---LKVKLENE 442
Query: 121 KPGQIVAALLH---LDQKWYRA-QVMTVSDSTPPTLELYFVDY-GDSMDMPQPS--VYQL 173
LH +D Y + D PP L+ YF + G + + +
Sbjct: 443 YA-------LHRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 174 NPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTD 232
FL RF +E +R W + + + L +++ YK D
Sbjct: 494 RMVFLDFRF--LE---QKIRHDSTAW-----NASGSILN------TLQQLKFYKPYICD 536
Score = 46.4 bits (109), Expect = 9e-06
Identities = 49/315 (15%), Positives = 96/315 (30%), Gaps = 114/315 (36%)
Query: 25 LSVQESELRAEKLIST-SSDGSLTV--FMSAVANPDRFWV--QI---MNDRAIELDQLVE 76
+ +++ +L T S V F+ V + ++ I ++ +E
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 77 SMTDYYN-------------QKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPG 123
YN Q + L E++P + V L+ + G
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LID---------GV---LG 160
Query: 124 ---QIVAALLHLDQK----------WYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSV 170
VA + L K W + + + P ++M Q +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFW-----LNLKNCNSP---------ETVLEMLQKLL 206
Query: 171 YQLNPTF---------LGLRFQAIECSLANV---RP-------VGDVWSEEAISCFEDLT 211
YQ++P + + LR +I+ L + +P + +V + +A + F +L
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NL- 264
Query: 212 HVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDT-SGEQDVNISQELISRGF------ 264
K+LL T+ + D S +IS + S
Sbjct: 265 ---SCKILL--------TTRF---------KQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 265 AVSSK----SGSELP 275
++ K +LP
Sbjct: 305 SLLLKYLDCRPQDLP 319
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics
consortium, antibody, SGC, protein immune system
complex; 2.05A {Homo sapiens}
Length = 77
Score = 47.5 bits (113), Expect = 1e-07
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 25/82 (30%)
Query: 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYF 156
KPG AL D K+YRA+V + S+ T + F
Sbjct: 19 KPGDECFALYWEDNKFYRAEVEAL-------------------------HSSGMTAVVKF 53
Query: 157 VDYGDSMDMPQPSVYQLNPTFL 178
+DYG+ ++ ++ +
Sbjct: 54 IDYGNYEEVLLSNIKPIQTEAW 75
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding
protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Length = 64
Score = 42.4 bits (100), Expect = 6e-06
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 121 KPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMP 166
K G A+ D + Y A++ + + T + F YG++ P
Sbjct: 10 KVGDKCMAVWSEDGQCYEAEIEEIDEEN-GTAAITFAGYGNAEVTP 54
Score = 33.2 bits (76), Expect = 0.011
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 90 THRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLD 133
T K G A+ D + Y A++ + AA+
Sbjct: 3 TQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAG 46
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy,
RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1
PDB: 4a4e_A* 4a4g_A*
Length = 59
Score = 41.3 bits (97), Expect = 1e-05
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 121 KPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMP 166
K G +A+ D Y A + ++ T + + YG+ +
Sbjct: 5 KVGDKCSAIWSEDGCIYPATIASIDFKR-ETCVVVYTGYGNREEQN 49
Score = 33.2 bits (76), Expect = 0.009
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 93 LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLD 133
L + K G +A+ D Y A + ++ + +++
Sbjct: 1 LQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTG 41
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 55/376 (14%), Positives = 107/376 (28%), Gaps = 132/376 (35%)
Query: 31 ELR---------AEKLISTSSDGSLTVFMSAVANPDRF---------WVQIMNDR----- 67
ELR LI S++ +L+ + + ++ W++ ++
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAE-TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 68 ---------AIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVM 118
I + QL Y T +L PG++ + L
Sbjct: 231 LLSIPISCPLIGVIQLAH----YVV------TAKLLGFTPGELRSYL---------KGAT 271
Query: 119 TVKPGQIVAALLHLDQKW------------------YRAQVMTVSDSTPPTLELYFVDYG 160
G + A + W R + S PP++ ++
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 161 DSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAIS------CF------E 208
+ PS L+ + L + ++ + + IS +
Sbjct: 332 EG----VPS-PMLSIS--NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 209 DLTHVAQWKVLLARVESYKETSTDLRSGSP------------LPCVSL-FDTSGEQDVN- 254
L L + K S +S P LP V+ F + +
Sbjct: 385 SLYG------LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFHSHLLVPASD 437
Query: 255 -ISQELISRGFAVSSKSGSELPDGRPNGNTSAGSN-----SSDSDTLVES--TAPV---- 302
I+++L+ + + ++ P +T GS+ S S+ +V+ PV
Sbjct: 438 LINKDLVKNNVSF---NAKDI--QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 303 -TNAENT----LSPGA 313
T + T PG
Sbjct: 493 TTQFKATHILDFGPGG 508
Score = 41.6 bits (97), Expect = 3e-04
Identities = 54/378 (14%), Positives = 102/378 (26%), Gaps = 109/378 (28%)
Query: 18 NQAPLEPLSVQESELRAEKLISTSSDGSLTV----FMSAVANP-DRFWVQIMNDRAIEL- 71
+ PL++ L L+ T+S + F + P + F EL
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 72 -------------------DQLVESMTDYYNQK--ANQETHRLT---EVKPGQIVAALLH 107
DQ++ + + H L + +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 108 LDQKWYRAQVMTVKPGQIVA--ALL-HLDQKWYRAQVMTV------SDSTPPTL-ELY-- 155
L + + A++M +P + AL + + AQ++ + +D L +LY
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEG--NAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 156 ---FVD-----------------------YGDSMDM--------PQPSVYQLN------P 175
V + +++ P L P
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 176 TFLGLRFQ----AIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETST 231
+G+ Q + L P E S + T +Q ++ A + ++
Sbjct: 240 -LIGV-IQLAHYVVTAKLLGFTP------GELRSYLKGATGHSQ-GLVTAVAIAETDSWE 290
Query: 232 DLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSKSGSELPDGRPNGNTSAG---SN 288
LF G + E + +S S L D N S
Sbjct: 291 SFFVSVRKAITVLF-FIGVR----CYEA----YPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 289 SSDSDTLVESTAPVTNAE 306
S+ + V+ TN+
Sbjct: 342 SNLTQEQVQDYVNKTNSH 359
Score = 35.0 bits (80), Expect = 0.035
Identities = 37/246 (15%), Positives = 66/246 (26%), Gaps = 95/246 (38%)
Query: 11 YRSLKNQNQAP---LEPLSVQESELRAEKLISTSSDGSLTVFMSAVANPDRFWVQIMNDR 67
R P L P +++S E + S M ++
Sbjct: 308 VRC---YEAYPNTSLPPSILEDSLENNEGVPS---------PMLSI-------------S 342
Query: 68 AIELDQLVESMTDYYNQKANQETHRLTEVK------PGQIV-----AALLHLDQKWYRAQ 116
+ +Q+ + + N V+ +V +L L+ R
Sbjct: 343 NLTQEQV-QDYVNKTNSHLPAGKQ----VEISLVNGAKNLVVSGPPQSLYGLNL-TLRK- 395
Query: 117 VMTVKPGQIVAALLHLDQKW--YRAQVMTVSD-----STP-------PTLELYFVDY--- 159
A LDQ + + + S+ ++P P +L D
Sbjct: 396 ---------AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 160 -----GDSMDMPQPSVYQLNPTFLGLRFQAIECSLAN-------VRPVGDVWSEEAISCF 207
+ +P VY TF G + + S++ PV W E
Sbjct: 447 NVSFNAKDIQIP---VYD---TFDGSDLRVLSGSISERIVDCIIRLPV-K-W-ETTTQF- 496
Query: 208 EDLTHV 213
TH+
Sbjct: 497 -KATHI 501
Score = 33.5 bits (76), Expect = 0.11
Identities = 37/230 (16%), Positives = 62/230 (26%), Gaps = 78/230 (33%)
Query: 128 ALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIEC 187
A H Y ++ + + P L ++F ++ + + F+ I
Sbjct: 1649 ADNHFKDT-YGFSILDIVINNPVNLTIHFGGEKGK---------RIRENYSAMIFETIVD 1698
Query: 188 SLANVRPVGDVWSEEAIS-CFE------DLTHVAQ----------WKVLLARVESYKETS 230
+ +E + S F T Q ++ L K
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL-------KS-- 1749
Query: 231 TDLRSGSPLPCV----SLFDTSGE-------QDVNIS-QELIS----RGFAVSSKSGSEL 274
+ P SL GE DV +S + L+ RG + +
Sbjct: 1750 ---KGLIPADATFAGHSL----GEYAALASLADV-MSIESLVEVVFYRGMTM-QVAVPRD 1800
Query: 275 PDGRPN--------GNTSAGSNSSDSDTLVESTAPVT---------NAEN 307
GR N G +A + +VE T N EN
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.34.9.1
Length = 78
Score = 41.4 bits (97), Expect = 2e-05
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 25/81 (30%)
Query: 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYF 156
KPG AL D K+YRA+V + S+ T + F
Sbjct: 11 KPGDECFALYWEDNKFYRAEVEAL-------------------------HSSGMTAVVKF 45
Query: 157 VDYGDSMDMPQPSVYQLNPTF 177
DYG+ ++ ++ +
Sbjct: 46 TDYGNYEEVLLSNIKPVQTEA 66
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize,
ISO-propanol, transcri; 1.78A {Homo sapiens} PDB:
3pmt_A*
Length = 54
Score = 40.0 bits (94), Expect = 3e-05
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 25/77 (32%)
Query: 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYF 156
KPG AL D K+YRA+V + S+ T + F
Sbjct: 3 KPGDECFALYWEDNKFYRAEVEAL-------------------------HSSGMTAVVKF 37
Query: 157 VDYGDSMDMPQPSVYQL 173
+DYG+ ++ ++ +
Sbjct: 38 IDYGNYEEVLLSNIKPI 54
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR
{Homo sapiens} SCOP: b.34.9.1
Length = 88
Score = 40.4 bits (94), Expect = 6e-05
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 121 KPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMP 166
K G +A+ D Y A + ++ T + + YG+ +
Sbjct: 12 KVGDKCSAIWSEDGCIYPATIASIDFKR-ETCVVVYTGYGNREEQN 56
Score = 32.7 bits (74), Expect = 0.030
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 97 KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLD 133
K G +A+ D Y A + ++ + +++
Sbjct: 12 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTG 48
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 29.4 bits (67), Expect = 1.8
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 83 NQKANQETHRLTE--VKPGQIVA 103
N KANQ E + +V
Sbjct: 71 NVKANQLARIFIEKGIGKDTLVG 93
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 29.0 bits (66), Expect = 2.1
Identities = 1/23 (4%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 83 NQKANQETHRLTE--VKPGQIVA 103
+ ++ H ++ +
Sbjct: 33 KEDSDALAHWISSEYPDDRSPIM 55
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 27.0 bits (59), Expect = 2.5
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 121 KPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYG 160
+ A + +W R Q++ + T +E+ D G
Sbjct: 23 ENDMHCAVKIQDKNQWRRGQIIRM--VTDTLVEVLLYDVG 60
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 28.3 bits (64), Expect = 3.6
Identities = 1/23 (4%), Positives = 6/23 (26%), Gaps = 2/23 (8%)
Query: 83 NQKANQETHRLTE--VKPGQIVA 103
+ ++ + + V
Sbjct: 36 KRDSDSIAAFIDSLALLAKSPVL 58
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A
{Escherichia coli} PDB: 2ho0_A 1f39_A
Length = 133
Score = 27.0 bits (60), Expect = 4.6
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 23/88 (26%)
Query: 40 TSSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQE------THRL 93
T D V + A+ FW+++ + SMT K +
Sbjct: 26 TKGDAERWVSTTKKASDSAFWLEVEGN----------SMTTPTGSKTSFPDGMLILVDPE 75
Query: 94 TEVKPGQIVAALLHLDQKWYRAQVMTVK 121
V+PG A L D+ T
Sbjct: 76 QAVEPGDFCIARLGGDE-------FTFA 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.127 0.369
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,655,644
Number of extensions: 263335
Number of successful extensions: 471
Number of sequences better than 10.0: 1
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 31
Length of query: 321
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 227
Effective length of database: 4,077,219
Effective search space: 925528713
Effective search space used: 925528713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.9 bits)