RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4551
         (321 letters)



>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein
           TDRKH {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 86.5 bits (214), Expect = 6e-22
 Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 30/126 (23%)

Query: 67  RAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIV 126
           R+++LD+LV  MT +Y     ++      V  G IVAA L  +  WYRA+V+        
Sbjct: 1   RSLQLDKLVNEMTQHYENSVPEDL----TVHVGDIVAAPLPTNGSWYRARVLGTLENG-- 54

Query: 127 AALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIE 186
                                    L+LYFVD+GD+ D P   +  L   FL L FQAIE
Sbjct: 55  ------------------------NLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIE 90

Query: 187 CSLANV 192
           CSLA +
Sbjct: 91  CSLARI 96


>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 90

 Score = 54.9 bits (132), Expect = 1e-10
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 31/117 (26%)

Query: 70  ELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAAL 129
           +  +L+E+M +     ++         + G+   A   +D +WYRA+V  V+        
Sbjct: 2   QFQKLMENMRNDI--ASHPPVEGSYAPRRGEFCIAK-FVDGEWYRARVEKVESPA----- 53

Query: 130 LHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTF--LGLRFQA 184
                                 + ++++DYG+   +P   +  L+P F    L  QA
Sbjct: 54  ---------------------KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQA 89


>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 47.5 bits (113), Expect = 3e-08
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 121 KPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDS 162
           K G   +A+   D   Y A + ++ D    T  + +  YG+ 
Sbjct: 5   KVGDKCSAIWSEDGCIYPATIASI-DFKRETCVVVYTGYGNR 45



 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 93  LTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTL 152
           L + K G   +A+   D   Y A + ++   +    +++    +   +   +SD   P  
Sbjct: 1   LQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTG--YGNREEQNLSDLLSPIC 58

Query: 153 E 153
           E
Sbjct: 59  E 59


>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 60

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 25/79 (31%)

Query: 97  KPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYF 156
           KPG    AL   D K+YRA+V  +                              T  + F
Sbjct: 4   KPGDECFALYWEDNKFYRAEVEALHSSG-------------------------MTAVVKF 38

Query: 157 VDYGDSMDMPQPSVYQLNP 175
            DYG+  ++   ++  +  
Sbjct: 39  TDYGNYEEVLLSNIKPVQT 57


>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus
           thermophilus [TaxId: 274]}
          Length = 250

 Score = 26.5 bits (58), Expect = 4.2
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 50  MSAVANP-----DRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAA 104
           ++  A+P       F  + M     E+   V       +     E   L  VKP   +  
Sbjct: 57  VAVGAHPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYL 116

Query: 105 LLHLDQKWYRAQVMTVKPGQIVAALLHL 132
               D++  RA  + VK       L+ L
Sbjct: 117 KACRDRETARAIALAVKAFDPGLPLVVL 144


>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 133

 Score = 25.7 bits (56), Expect = 4.7
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 119 TVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDY 159
           TV+ G+        D  W+ A+V+    +     E ++V Y
Sbjct: 12  TVEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHY 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.127    0.369 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,110,643
Number of extensions: 47950
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 10
Length of query: 321
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,240,546
Effective search space: 292768856
Effective search space used: 292768856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)