RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4557
(958 letters)
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 296 bits (760), Expect = 6e-94
Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 3/243 (1%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
+ L KV +TG+SSGIGE + L GA V ARR+++L L L A + V +
Sbjct: 3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLE 62
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
LDV V V + LG +DILVNNAG+M +E +W MI+ N+ G+++
Sbjct: 63 LDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYM 122
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
LP +L R G ++ +SS AG AVY TK+ + S LRQEV++R ++V
Sbjct: 123 TRAALPHLL--RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRV 180
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950
I+ G TEL H T + Y+ + L ++I++++ +A+ P H+ V+ I
Sbjct: 181 VVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAVTAPHHATVHEIF 240
Query: 951 IEP 953
I P
Sbjct: 241 IRP 243
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 287 bits (736), Expect = 3e-90
Identities = 90/240 (37%), Positives = 137/240 (57%), Gaps = 4/240 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +KVI +TG+S GIGE + ++L GAK++ ARR R+E + T +++A G+ + + LD
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + V + + G ID+LVNNAGVM + + K++EW MI+VNIKGVL IG
Sbjct: 62 VTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIG 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+LP M ++R G I+NI S + AVY TK+ + IS LRQE NI+VTC
Sbjct: 122 AVLPIME-AQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE--STNIRVTC 178
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
+ G V++EL T + + D +A+ L +I++++ + P I I P
Sbjct: 179 VNPGVVESELAGTITHEETMAAMDTYRAIA-LQPADIARAVRQVIEAPQSVDTTEITIRP 237
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 286 bits (735), Expect = 4e-90
Identities = 80/245 (32%), Positives = 133/245 (54%), Gaps = 9/245 (3%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK 770
G K++ +TG+SSGIGE + + G ++ +ARR++RL+ L + +
Sbjct: 11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNL------PNTLCA 64
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
++DVT + + G D +VNNAG+M ++ + EW M +VN+ G+L+
Sbjct: 65 QVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLN 124
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ +L M +R G I+NISS AG + F A Y GTK+ + IS +R+EV+ N++
Sbjct: 125 GMQAVLAPMK-ARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVR 183
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKA--VPVLTTKEISQSIIFALLQPSHSAVNS 948
V I VKTELLSH+T + + D YD + VL +++++++FA QP + +
Sbjct: 184 VMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLFAYQQPQNVCIRE 243
Query: 949 ILIEP 953
I + P
Sbjct: 244 IALAP 248
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 274 bits (703), Expect = 7e-86
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 13/239 (5%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKLDV 774
KV +TG+S GIGE + + L G + AR +DRLE + L G + LDV
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDV 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
+ V++ ++VL G +D++V NAG+ YF +E+ EE++ MI VN+ GV +
Sbjct: 62 SKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKA 121
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
L S+ ++ S + R Y TK+ + + E + +++ +
Sbjct: 122 FLDSLK-RTGGLALVTTSDVSA-RLIPYGGGYVSTKWAARALVRTFQIE--NPDVRFFEL 177
Query: 895 QAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
+ G V T + K L EI++++ L P V +++
Sbjct: 178 RPGAVDTYFGGSKPGKP--------KEKGYLKPDEIAEAVRCLLKLPKDVRVEELMLRS 228
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 274 bits (704), Expect = 8e-86
Identities = 53/245 (21%), Positives = 108/245 (44%), Gaps = 13/245 (5%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---II 768
+ +TG+S GIG + L T G +VV +AR LE + + + I
Sbjct: 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPI 62
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
V LD+T ++++ + G +DILVN A + + + ++ + ++ +N+
Sbjct: 63 VLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSE-PVDNFRKIMEINVIAQ 121
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ + M ++ G+I N++S A FA +Y TK+ + G++ +L +E++
Sbjct: 122 YGILKTVTEIMK-VQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLG 180
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948
I+VT + G V T++ + K ++ ++ +I L + +
Sbjct: 181 IRVTTLCPGWVNTDMAKKAGTPF--------KDEEMIQPDDLLNTIRCLLNLSENVCIKD 232
Query: 949 ILIEP 953
I+ E
Sbjct: 233 IVFEM 237
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 271 bits (696), Expect = 3e-84
Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 7/249 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIV 769
+++ VTG+S GIG + + LV G KVV AR + +E L ++A PG++I
Sbjct: 28 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIP 87
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
+ D++ E D+ + + ++ +DI +NNAG+ + W M NVN+ +
Sbjct: 88 YRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALS 147
Query: 830 HCIGNILPSML-HSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
C SM + GHI+NI+S +G V P + Y+ TKY + ++ LRQE+ +
Sbjct: 148 ICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELRE 207
Query: 887 R--NIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHS 944
+I+ TCI G V+T+ D+D + + L +++++++I+ L P+H
Sbjct: 208 AQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHI 267
Query: 945 AVNSILIEP 953
+ I + P
Sbjct: 268 QIGDIQMRP 276
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 270 bits (692), Expect = 3e-84
Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 17/245 (6%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAK-------VVAVARRIDRLENLKTSLQNAPGSII 768
++ +TG+ GIG + + +V +R LE + +
Sbjct: 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTD 61
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
D++ DV+++ ++ GHID LVNNAGV F + E+++ +N N+KG
Sbjct: 62 TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGT 121
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ M + GHI I+S A + F ++Y +K+ G+ +R N
Sbjct: 122 FFLTQALFALME-RQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCN 180
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948
+++T +Q G V T + D ++ ++ ++I+ ++ A LQPS + V
Sbjct: 181 VRITDVQPGAVYTPMWGKVDD-------EMQAL--MMMPEDIAAPVVQAYLQPSRTVVEE 231
Query: 949 ILIEP 953
I++ P
Sbjct: 232 IILRP 236
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 269 bits (690), Expect = 5e-84
Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 16/241 (6%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ +TG+S GIGE + L G +V +AR RL+ L L+ A +
Sbjct: 2 EGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGA----LPLPG 57
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV E D + V + G + LVNNAGV + + LEEW +++ N+ G I
Sbjct: 58 DVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGI 117
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ +P++L R G I+N+ S AG PF G A Y +K+ + G++GA ++ + N++V
Sbjct: 118 RHAVPALL-RRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVV 176
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952
+ G V T ++ + L ++++Q+++FAL P H+ V+ I +
Sbjct: 177 NVLPGSVDTGFAGNTPGQAW-----------KLKPEDVAQAVLFALEMPGHAMVSEIELR 225
Query: 953 P 953
P
Sbjct: 226 P 226
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 269 bits (691), Expect = 1e-83
Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 2/243 (0%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
+ + +F+TG++SG GE + G +V RR +RL+ L L +A ++
Sbjct: 17 GSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGEL-SAKTRVLPLT 75
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFT-LMEKYKLEEWNAMINVNIKGVLH 830
LDV + V + E + L+NNAG+ T + L++W+ M++ NIKG+L+
Sbjct: 76 LDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLY 135
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+LP ++ I+N+ S AG P+ G VY GTK F+E S LR ++ ++
Sbjct: 136 STRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVR 195
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950
VT ++ G ++E D + ++I+++I + + QP+H +NS+
Sbjct: 196 VTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPAHLNINSLE 255
Query: 951 IEP 953
I P
Sbjct: 256 IMP 258
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 262 bits (673), Expect = 1e-81
Identities = 49/241 (20%), Positives = 100/241 (41%), Gaps = 14/241 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
++ I VTG+ SG+G L LV G +V + RR RL+ + L ++I D
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL---GNAVIGIVAD 57
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ DV + G +++++ AG F + Y E+ ++ N+ +
Sbjct: 58 LAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQ 117
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ + R G + N+ S+A A ++Y +K+ + G +LR E+ D +++
Sbjct: 118 QTVRLIG--ERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLVN 175
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
+ +++E ++ D +T ++ + ++ AL S V + I
Sbjct: 176 LYPSGIRSEFWDNTDHVD---------PSGFMTPEDAAAYMLDALEARSSCHVTDLFIGR 226
Query: 954 P 954
Sbjct: 227 N 227
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 261 bits (669), Expect = 7e-81
Identities = 60/241 (24%), Positives = 113/241 (46%), Gaps = 13/241 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+L K+ VTG++ G+G ++VKDL V A+ R + L L + +
Sbjct: 2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEG-----VEPIES 55
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D+ E + V + L L H+D LV+ A V T +E + EW+A +++N+
Sbjct: 56 DIVKEVLEEGGV-DKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELS 114
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+LP++ G ++ I+S AG P G +Y +K+ + G++ A R+E ++ I+V+
Sbjct: 115 RQLLPALR--AASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVS 172
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952
+ G T +L D + + + KEI+ +I F + + + ++ +
Sbjct: 173 TVSPGPTNTPMLQGLMDSQGTNFRP---EIY-IEPKEIANAIRFVIDAGETTQITNVDVR 228
Query: 953 P 953
P
Sbjct: 229 P 229
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 251 bits (644), Expect = 3e-77
Identities = 76/238 (31%), Positives = 132/238 (55%), Gaps = 6/238 (2%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
++ VTG+++G GE + + + G KV+A RR +RL+ LK L ++ + +LDV
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG---DNLYIAQLDVRNR 58
Query: 778 NDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+++++ + AE +IDILVNNAG+ + K +E+W MI+ N KG+++ +L
Sbjct: 59 AAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVL 118
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
P M+ R GHI+NI S AG P+AG VY TK F+ S LR ++ ++VT I+
Sbjct: 119 PGMV-ERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEP 177
Query: 897 GDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
G V S+ + K + + LT +++S+++ + P+H +N++ + P
Sbjct: 178 GLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMP 235
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 252 bits (646), Expect = 4e-77
Identities = 61/248 (24%), Positives = 121/248 (48%), Gaps = 7/248 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLG---AKVVAVARRIDRLENLKTSLQNA--PGS 766
LA K + +TG+S+GIG+ + + K++ ARR+++LE LK ++
Sbjct: 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAK 88
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAG-VMYFTLMEKYKLEEWNAMINVNI 825
+ V +LD+T +K + + E IDILVNNAG + + + E+ + + N+
Sbjct: 89 VHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNV 148
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
+++ +LP ++ G I+N+ S AG + ++Y +K+ + + +LR+E+
Sbjct: 149 TALINITQAVLPIFQ-AKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELI 207
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSA 945
+ I+V I G V+TE + ++ K L +++ I++A + ++
Sbjct: 208 NTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQNTV 267
Query: 946 VNSILIEP 953
+ LI P
Sbjct: 268 IADTLIFP 275
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 255 bits (653), Expect = 1e-75
Identities = 104/475 (21%), Positives = 180/475 (37%), Gaps = 58/475 (12%)
Query: 259 FAHPTVQEMAALLENKSNETL-----KLDLIHEIDVNSYKSLDENLNVRVQCF--WKSVQ 311
H + + + +L +H + + D L+ + +V
Sbjct: 6 HHHHHSSGLVPRGSHMGRDARPTSDPRLVSVHGDNPTEVHASDLTLDRFIDADTLATAVN 65
Query: 312 LNSNKLKYGNVLLTGVTGYLGIHLLQKFL--VDTKCTLFCPVRETPNKTLLQRLEDIMLK 369
L + VLLTG TG+LG +L+ + L +D L C VR ++ +RLE
Sbjct: 66 LPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDS 125
Query: 370 YHMSLDLN---NYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPY 426
L + DRL +V D S LGL +Q + L+ +D+I+ +AA VN PY
Sbjct: 126 GDPELLRHFKELAADRLEVVAGDKSEPDLGL-DQPMWRRLAETVDLIVDSAAMVNA-FPY 183
Query: 427 NALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST-----SENFQEDYTVADFDDFM 481
+ L+ NV T LI + K+K F YVST + + +E+
Sbjct: 184 HELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDG 243
Query: 482 TTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFK-NWNLVDLNLYILKAIT 539
GYG SK E L+ A LPV++ RCG I + N+ D ++ ++
Sbjct: 244 GWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLM 303
Query: 540 RLGYAPDIDW-----------YLEFTPVDFLTKSLVQLTTNVNNAN----KIYNFIN--T 582
G AP + + + PV F+ +++ L V ++ Y+ +N
Sbjct: 304 ATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHD 363
Query: 583 NPIHIKTLVSVLNTYGYNIKTV-PYEKWFHKLNKRELSE-------PLIQILRNKGKEYL 634
+ I + V L GY I+ + + +W + + ++ +L + L
Sbjct: 364 DGIGLDEYVDWLIEAGYPIRRIDDFAEWLQRFEASLGALPDRQRRHSVLPMLLASNSQRL 423
Query: 635 --------TVNNSYCQRNTLALLKSCDET----YPETNDHTVRQFLDNLRNSNLL 677
+ R + K + P + T+ ++ NL+ LL
Sbjct: 424 QPLKPTRGCSAPTDRFRAAVRAAKVGSDKDNPDIPHVSAPTIINYVTNLQLLGLL 478
Score = 32.2 bits (73), Expect = 0.85
Identities = 20/157 (12%), Positives = 55/157 (35%), Gaps = 32/157 (20%)
Query: 717 KVIFVTGSSSGIGEQLVKDLV---TLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ + +TG++ +G LV +L+ + +++ + R E+ + L+ S + L
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAES-DEDARRRLEKTFDSGDPELLR 132
Query: 774 VTIENDVKKVV--------------REVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWN 818
E ++ + + L +D++V++A ++ +
Sbjct: 133 HFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELF----- 187
Query: 819 AMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNA 855
N+ G I + + + +S+
Sbjct: 188 ---GPNVAGTAELI-----RIALTTKLKPFTYVSTAD 216
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 243 bits (622), Expect = 2e-74
Identities = 45/237 (18%), Positives = 102/237 (43%), Gaps = 16/237 (6%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+I +TG+SSG+G +L K G R +L + L ++ + D+
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLS---NNVGYRARDLAS 58
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+V+++ ++ +V++AG YF L+++ E+ +I N+ ++ + ++
Sbjct: 59 HQEVEQLFEQLD---SIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELV 115
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
+P +++ I S A +P A + Y K+ ++G+ ++R E+ + +K+ +
Sbjct: 116 KRYK--DQPVNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYP 173
Query: 897 GDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
G + TE S ++ ++ + I AL + V+ I +
Sbjct: 174 GGMATEFWETSGKSL--------DTSSFMSAEDAALMIHGALANIGNGYVSDITVNR 222
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 242 bits (619), Expect = 1e-73
Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 10/243 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
++L+ +V VTG+S GIG + + L +LGA+VV AR +++L ++ + A G
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHA 84
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLH 830
D++ + + VLA G D+LVNNAGV + + K EW+A+I VN+K
Sbjct: 85 CDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYL 144
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ P+M+ + GHI+NISS AG P A A YT +K+ + G+ + +E+ ++
Sbjct: 145 LLRAFAPAMIA-AKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVR 203
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950
V+ + G V+TE + + A+ + +I+ + Q S ++ +L
Sbjct: 204 VSLVAPGSVRTEFGVGLSAKK--------SALGAIEPDDIADVVALLATQADQSFISEVL 255
Query: 951 IEP 953
+ P
Sbjct: 256 VRP 258
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 213 bits (545), Expect = 6e-63
Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 13/232 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKK 771
L K + VTG+S GIG ++ L +GA VV AR + L+ + + S
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIA 84
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+ ++ V + +G +D+L+ N + + + VN +
Sbjct: 85 GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 144
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR--NI 889
LP ML + G I+ +SS AG + +A Y+ +K+ ++G ++R+E S N+
Sbjct: 145 TVAALP-MLK-QSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNV 202
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941
+T G + TE + V + +E + II
Sbjct: 203 SITLCVLGLIDTETAMKAVSGIV--------HMQAAPKEECALEIIKGGALR 246
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 210 bits (538), Expect = 2e-62
Identities = 42/242 (17%), Positives = 90/242 (37%), Gaps = 4/242 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
T N + V G+ IG ++ K G V A R ++L L ++ A G I+ + L
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSL 63
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D E++V + +++ + N G + + + + +
Sbjct: 64 DARNEDEVTAFLNAA-DAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSG 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
ML + G I + A +R +G A + K+ + ++ ++ +E+ +NI V
Sbjct: 123 RESARLML-AHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNIHVA 181
Query: 893 -CIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951
I V T + ++ + + ++ ++ + QP + + I
Sbjct: 182 HLIIDSGVDTAWVRERREQMFGKDALANPDL-LMPPAAVAGAYWQLYQQPKSAWTFEMEI 240
Query: 952 EP 953
P
Sbjct: 241 RP 242
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 207 bits (530), Expect = 5e-61
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 10/255 (3%)
Query: 704 GTVNIVFG--NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ 761
GT N+ F + K+ VTG+ SG+G + L G V RR+D L+ +
Sbjct: 14 GTENLYFQSMSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI- 72
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAM 820
+ DVT + V+ + + + G +D+L NNAG ME +W +
Sbjct: 73 --GDDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQV 130
Query: 821 INVNIKGVLHCIGNILPSML-HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGA 879
++ N+ G C M R G I+N S + P A YT TK+ I G++ +
Sbjct: 131 VDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKS 190
Query: 880 LRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAV-PVLTTKEISQSIIFAL 938
+ +I I G+ T + V + D+S V PV+ ++ ++++
Sbjct: 191 TSLDGRVHDIACGQIDIGNADTPMAQKMKAG--VPQADLSIKVEPVMDVAHVASAVVYMA 248
Query: 939 LQPSHSAVNSILIEP 953
P + V + I
Sbjct: 249 SLPLDANVQFMTIMA 263
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 206 bits (527), Expect = 4e-60
Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 7/207 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIV 769
A + FVTG ++G+G LV+ L+ G KV R D ++ +L + + ++
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
+LDV K EV A G + IL NNAGV F +E+ ++W+ ++ VN+ GV+
Sbjct: 64 VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVV 123
Query: 830 HCIGNILPSML-----HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV 884
+ + +P M+ ++ GH++N +S A +Y TK+ + G+S +L +
Sbjct: 124 NGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSL 183
Query: 885 SDRNIKVTCIQAGDVKTELLSHSTDRD 911
I V+ + G VK+ + + R
Sbjct: 184 LKYEIGVSVLCPGLVKSYIYASDDIRP 210
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 199 bits (509), Expect = 5e-59
Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 26/231 (11%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+ +TG++ G+G + L G ++ RR L L + + D+ E
Sbjct: 3 VLITGATGGLGGAFARALK--GHDLLLSGRRAGALAELAREV---GARALP--ADLADEL 55
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
+ K ++ E G +D+LV+ G + + + M+ ++ L
Sbjct: 56 EAKALL----EEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFV----LKH 107
Query: 839 MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD 898
++ + + G A Y K +E A R+E+ + + ++
Sbjct: 108 AR-FQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPA 166
Query: 899 VKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949
V T L + L+ +E ++ ++ L + A+ +
Sbjct: 167 VATGLWAPLGGPP----------KGALSPEEAARKVLEGLFREPVPALLEV 207
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 200 bits (510), Expect = 4e-58
Identities = 64/198 (32%), Positives = 93/198 (46%), Gaps = 4/198 (2%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ + KV VTG+SSG G + + V G V+ ARR + L++L P L
Sbjct: 2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLV---AAYPDRAEAISL 58
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT + V +VLA G +D+LVNNAG E+ E + +++ G
Sbjct: 59 DVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLT 118
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+LP M R G ++NISS G FAG + Y+ TK +E +S L EV+ IKV
Sbjct: 119 RALLPQM-RERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVL 177
Query: 893 CIQAGDVKTELLSHSTDR 910
++ G +T L
Sbjct: 178 IVEPGAFRTNLFGKGAAY 195
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 199 bits (508), Expect = 5e-58
Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 14/231 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +++ +TG+ GIG + L +K+V LE + + +D
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVD 88
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ D+ ++V AE+G + ILVNNAGV+Y + + + + VN+
Sbjct: 89 CSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTK 148
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR---NIK 890
LP+M + GHI+ ++S AG L Y +K+ G L E++ +K
Sbjct: 149 AFLPAMTKNNH-GHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVK 207
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941
TC+ V T + + + + P L +E+ ++ +L
Sbjct: 208 TTCLCPNFVNTGFIKNPS----------TSLGPTLEPEEVVNRLMHGILTE 248
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 194 bits (496), Expect = 2e-56
Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 14/231 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
L NK + + GIG ++LV K + R++ L P +I
Sbjct: 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTY 62
Query: 773 DVTIE-NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT+ + KK+++++ +L +DIL+N AG++ + I +N G+++
Sbjct: 63 DVTVPVAESKKLLKKIFDQLKTVDILINGAGIL--------DDHQIERTIAINFTGLVNT 114
Query: 832 IGNILPSMLHSR--RPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
IL + G I NI S G + VY+ +K + + +L + +
Sbjct: 115 TTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGV 174
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDK--YDISKAVPVLTTKEISQSIIFAL 938
I G +T L+ V+ ++ + P T+++ Q+ + A+
Sbjct: 175 TAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAI 225
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 194 bits (495), Expect = 2e-56
Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 19/243 (7%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVV--AVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
KVI VTG S GIG+ +V L +L V VAR L+ LK D+
Sbjct: 3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---GDRFFYVVGDI 59
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIG 833
T ++ +K++V + G ID LV NAGV+ + + + W + ++N ++ +G
Sbjct: 60 TEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVG 119
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
LP + + G+++ +SS+A F+ Y +K + + L E +R +K
Sbjct: 120 IALPELK--KTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE--ERQVKAIA 175
Query: 894 IQAGDVKTEL---LSHSTDRDVVDKYDISKAVP------VLTTKEISQSIIFALLQPSHS 944
+ G V T++ + + + + +L + + L
Sbjct: 176 VAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPD 235
Query: 945 AVN 947
VN
Sbjct: 236 GVN 238
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 195 bits (498), Expect = 5e-56
Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 7/213 (3%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-----RLENLKTSLQNAPGSI 767
++ K+I +TG+SSG G + L G +V A R I +E + ++ +
Sbjct: 2 VMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDL 61
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKG 827
+LDV + V + + +++ E G ID+L++NAG M F E + E++ + ++N+
Sbjct: 62 RTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLS 121
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA-GLAVYTGTKYFIEGISGALRQEVSD 886
LP M ++ G ++ ISS++ LA Y K ++ I+ +E+S
Sbjct: 122 TQRVNRAALPHM-RRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSR 180
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDIS 919
I+ + I G + + D +
Sbjct: 181 WGIETSIIVPGAFTSGTNHFAHSGVPDDHARQA 213
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 192 bits (491), Expect = 3e-55
Identities = 54/203 (26%), Positives = 96/203 (47%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
+ + VTG +SGIG + GA++V LE L+
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVV 86
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV +++ ++ E LG +D++ +NAG++ + + ++W +I++++ G +H
Sbjct: 87 CDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHA 146
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ LP +L GHI +S AG+ P AGL Y KY + G++ L +EV I V
Sbjct: 147 VEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGIGV 206
Query: 892 TCIQAGDVKTELLSHSTDRDVVD 914
+ + V+T+L+S+S D
Sbjct: 207 SVLCPMVVETKLVSNSERIRGAD 229
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 184 bits (470), Expect = 1e-52
Identities = 62/262 (23%), Positives = 113/262 (43%), Gaps = 11/262 (4%)
Query: 702 NAGTVNIVF-------GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLE 754
+ GT N+ F + ++ VTG +G+G + + L G VV RR D L+
Sbjct: 12 DLGTENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLD 71
Query: 755 NLKTSLQNAPG-SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTL-MEKY 812
+ G + DV + V + V AE +D+LVNNAG + +E+
Sbjct: 72 AAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEV 131
Query: 813 KLEEWNAMINVNIKGVLHCIGNILPSML-HSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871
E+WN ++ N+ G C + M + R G I+N S + P A YT TK+
Sbjct: 132 TFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKH 191
Query: 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEIS 931
I G++ + + +I I G+ T++ + + V+ A P + + I+
Sbjct: 192 AITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMST-GVLQANGEVAAEPTIPIEHIA 250
Query: 932 QSIIFALLQPSHSAVNSILIEP 953
+++++ P + V ++ +
Sbjct: 251 EAVVYMASLPLSANVLTMTVMA 272
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 181 bits (462), Expect = 5e-51
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 11/215 (5%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDL---VTLGAKVVAVARRIDRLENLK---TSLQNAPGSII 768
A V+ +TG SSGIG L L + KV A R + L +L PGS+
Sbjct: 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLE 60
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
+LDV V V G +D+LV NAG+ +E + ++++VN+ G
Sbjct: 61 TLQLDVRDSKSVAAARERVTE--GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGT 118
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ + LP M R G +L S G+ VY +K+ +EG+ +L +
Sbjct: 119 VRMLQAFLPDMK-RRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFG 177
Query: 889 IKVTCIQAGDVKTELLSHSTDR--DVVDKYDISKA 921
+ ++ I+ G V T + +V+D+ DI
Sbjct: 178 VHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTF 212
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 177 bits (452), Expect = 2e-50
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 7/221 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ + VTG S GIG + + L GA V + + + L+N ++ ++D
Sbjct: 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAV---EVD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT V +++ + LG D+L NAGV EEW+ +VN +GV
Sbjct: 67 VTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQ 126
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
L S G I+N +S A LA Y+ +K+ + G + AL +E++ +NI+V C
Sbjct: 127 IACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNC 186
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934
+ G VKT + +R+++ + ++ P E
Sbjct: 187 VCPGFVKTAM----QEREIIWEAELRGMTPEAVRAEYVSLT 223
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 177 bits (451), Expect = 3e-50
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 7/221 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TGS+ GIG + V GA V I+R + + ++D
Sbjct: 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GPAAYAVQMD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT ++ + + + G +DILVNNA + + + E + + +N+ G L +
Sbjct: 63 VTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQ 122
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
M+ R G I+N++S AG R A +A+Y TK + ++ + ++ I V
Sbjct: 123 AAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRINVNA 182
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934
I G V E D + + +++
Sbjct: 183 IAPGVVDGEH----WDGVDALFARYENRPRGEKKRLVGEAV 219
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 177 bits (451), Expect = 3e-50
Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 1/191 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
L K +TG++ GIG + + GA++V R + L+ + +L G + +
Sbjct: 18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAI 77
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D+ + ++ R G +D+LVNNAG+ + + + ++A I VN++
Sbjct: 78 DLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLA 137
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ +M+ + G I+ ++S A + P Y +K + + L +E+ I+
Sbjct: 138 SAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGPHGIRAN 197
Query: 893 CIQAGDVKTEL 903
+ V TE+
Sbjct: 198 SVCPTVVLTEM 208
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 177 bits (451), Expect = 3e-50
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 3/192 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +KV+ ++G +G L + GA +V AR ++RLE++ + + + D
Sbjct: 9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTD 68
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
+T + V +V E + G +D+++NNA + E I + + G L I
Sbjct: 69 ITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLI 128
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P++ G ++N++S A Y K + +S L E+ ++ I+V
Sbjct: 129 QGFTPALE--ESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRVN 186
Query: 893 CIQAGDVKTELL 904
+ G + L
Sbjct: 187 SVLPGYIWGGTL 198
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 176 bits (450), Expect = 3e-50
Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 4/219 (1%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
KV VTG+ GIG+ + LV G V + + + + A G + K+DV+
Sbjct: 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVS 61
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ V V + LG D++VNNAGV T +E E + + N+N+KGV+ I
Sbjct: 62 DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAA 121
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
+ + G I+N S AG LAVY+ +K+ + G++ ++++ I V
Sbjct: 122 VEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYC 181
Query: 896 AGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934
G VKT + + + T E ++ I
Sbjct: 182 PGIVKTPM----WAEIDRQVSEAAGKPLGYGTAEFAKRI 216
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 175 bits (445), Expect = 1e-49
Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 9/215 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
K V G + G+G V+ LV GA+V+ R + ++ + +
Sbjct: 4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---GPRVHALR 60
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D+ N++ + LG ID+L NAGV ++ ++ VN KG
Sbjct: 61 SDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFT 120
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ + P + R G I+ SS A G++VY+ +K + + L E+ R I+V
Sbjct: 121 VQRLTPLI---REGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRV 177
Query: 892 TCIQAGDVKTELLSHSTDRDVVD---KYDISKAVP 923
+ G + T + + K P
Sbjct: 178 NSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITP 212
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 174 bits (444), Expect = 2e-49
Identities = 50/250 (20%), Positives = 97/250 (38%), Gaps = 20/250 (8%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTL---GAKVVAVARRIDRLENLKTSL--QNAPG 765
+ L V +TG+S G G L L L G+ ++ AR L LK L Q
Sbjct: 1 ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL 60
Query: 766 SIIVKKLDVTIENDVKKVVREVLAELG----HIDILVNNAGV---MYFTLMEKYKLEEWN 818
+++ D+ E V++++ V +L+NNA + + L E N
Sbjct: 61 KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVN 120
Query: 819 AMINVNIKGVLHCIGNILPSMLHSR-RPGHILNISSNAGVRPFAGLAVYTGTKYFIEGIS 877
+N+ +L L + S ++NISS ++P+ G +Y K + +
Sbjct: 121 NYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLY 180
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTELLSH--STDRDVVDKYDISKAVP---VLTTKEISQ 932
L E + +++V G + ++ T +D + + K ++ +Q
Sbjct: 181 QVLAAE--EPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQ 238
Query: 933 SIIFALLQPS 942
++ L + +
Sbjct: 239 KLLGLLQKDT 248
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 174 bits (444), Expect = 2e-49
Identities = 46/207 (22%), Positives = 81/207 (39%), Gaps = 6/207 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV---AVARRIDRLENLKTSLQNAPGSII 768
+ L NKVI + G +G K +V A+ D LK L++ +
Sbjct: 7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVA 66
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
+ + D++ E +V K+ E G +DI +N G + + + E++AM +N K
Sbjct: 67 LYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVA 126
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
I M GHI+ I+++ + Y G K +E + A +E+ +
Sbjct: 127 YFFIKQAAKHM---NPNGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQ 183
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDK 915
I V I G + T ++
Sbjct: 184 ISVNAIAPGPMDTSFFYGQETKESTAF 210
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 174 bits (444), Expect = 4e-49
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 9/227 (3%)
Query: 699 SISNAGTVNIVFG---NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLEN 755
S + GT N+ F L K+ +TG++SGIG K V GA+V RR D L+
Sbjct: 9 SGVDLGTENLYFQSMTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDA 68
Query: 756 LKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLE 815
+ G + + D ++ ++ +V AE G ID+L NAG + + E
Sbjct: 69 AIAEI---GGGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEE 125
Query: 816 EWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875
+++ + N+KGVL + LP + R ++ S AG +VY +K +
Sbjct: 126 QYDDTFDRNVKGVLFTVQKALPLL---ARGSSVVLTGSTAGSTGTPAFSVYAASKAALRS 182
Query: 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAV 922
+ ++ DR I++ + G +T L +D V + + A+
Sbjct: 183 FARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNAL 229
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 173 bits (441), Expect = 7e-49
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 4/205 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKK 771
NKV VTG+S GIG + L + G VV A + E + ++ A G + +
Sbjct: 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQ 83
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV+ V+++ G +D+LVNNAG+M T + + ++ +I VN+KG +
Sbjct: 84 ADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNT 143
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ + R G I+N+S++ +Y K +E ++ L +E+ R+I V
Sbjct: 144 LREAAQRL---RVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITV 200
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKY 916
+ G T+L +V D++
Sbjct: 201 NAVAPGPTATDLFLEGKSDEVRDRF 225
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 173 bits (441), Expect = 7e-49
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 1/190 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-AVARRIDRLENLKTSLQNAPGSIIVKKL 772
L KV+ +TGSS+G+G+ + T AKVV + D ++ ++ G I K
Sbjct: 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKG 64
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT+E+DV +V+ + E G +D+++NNAG+ + L +WN +I+ N+ G
Sbjct: 65 DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGS 124
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ + + G ++N+SS P+ Y +K ++ ++ L E + + I+V
Sbjct: 125 REAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVN 184
Query: 893 CIQAGDVKTE 902
I G + T
Sbjct: 185 NIGPGAINTP 194
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 172 bits (439), Expect = 8e-49
Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 6/228 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L NKV+ VTG+ SGIG + K + VVAV DRL + L+ ++ K D
Sbjct: 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKAD 64
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCI 832
V+ + DV++ VR ID+L NNAG+M T + + E W ++ VN+ +
Sbjct: 65 VSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSS 124
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
++P ML + G I+N +S AG+R A YT K+ + G++ ++ D+ I+
Sbjct: 125 RAVIPIML-KQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAV 183
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL----TTKEISQSIIF 936
+ G VKT + S+ + ++K + + ++I+ I+F
Sbjct: 184 AVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVF 231
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 171 bits (437), Expect = 2e-48
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 2/203 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TG+ +GIG+++ T GA VV D ++ +Q G + D
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+T E ++ + +++LG +DILVNNAG + + ++ +N+ H
Sbjct: 69 ITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFD-MPMADFRRAYELNVFSFFHLSQ 127
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ P M G IL I+S A + Y +K + + ++ ++NI+V
Sbjct: 128 LVAPEME-KNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNG 186
Query: 894 IQAGDVKTELLSHSTDRDVVDKY 916
I G + T+ L ++ K
Sbjct: 187 IAPGAILTDALKSVITPEIEQKM 209
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 171 bits (437), Expect = 2e-48
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 2/191 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L NKV VT S+ GIG + + L GA VV +R+ + ++ +LQ S+
Sbjct: 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCH 71
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCI 832
V D +++V + G +DILV+NA V +F + E W+ +++VN+K +
Sbjct: 72 VGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMT 131
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
++P M R G +L +SS PF L Y +K + G++ L E++ RNI+V
Sbjct: 132 KAVVPEME-KRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVN 190
Query: 893 CIQAGDVKTEL 903
C+ G +KT
Sbjct: 191 CLAPGLIKTNF 201
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 171 bits (435), Expect = 4e-48
Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 6/221 (2%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSIIVKKLD 773
+KV VTG + GIG + + L G + ++ ++ ++ A + LD
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + + + E +LG D+LVNNAG+ + + E+ + +VN+ V I
Sbjct: 62 VTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQ 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
G I+N +S A ++ F L+ Y+ TK+ + G++ A QE++ + V
Sbjct: 122 AASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNA 181
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934
G V T + ++ + I+ KE S SI
Sbjct: 182 YAPGIVGTGM----WEQIDAELSKINGKPIGENFKEYSSSI 218
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 173 bits (441), Expect = 4e-48
Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 20/254 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI------ 767
LA +F+TG+S GIG+ + GA +V A+ L ++ A I
Sbjct: 43 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGK 102
Query: 768 -IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIK 826
+ +DV E + V + + + G IDILVNNA + T + + M+NVN +
Sbjct: 103 ALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTR 162
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--FAGLAVYTGTKYFIEGISGALRQEV 884
G +P + S+ HILNIS + P F YT KY + + +E
Sbjct: 163 GTYLASKACIPYLKKSKV-AHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEF 221
Query: 885 SDRNIKVTCIQAGD-VKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943
I V + + T + + + I+ + +P
Sbjct: 222 KG-EIAVNALWPKTAIHTAAMDMLGGPGIESQCR--------KVDIIADAAYSIFQKPKS 272
Query: 944 SAVNSILIEPPLAS 957
N ++ E L
Sbjct: 273 FTGNFVIDENILKE 286
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 170 bits (434), Expect = 4e-48
Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 4/229 (1%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
N + KV+ +TG SSG+G+ + GA+VV R ++LE K ++ PG I+ +
Sbjct: 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQ 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+DV +D++K++ ++ + G IDIL+NNA + E + WN++IN+ + G +C
Sbjct: 62 MDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYC 121
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV-SDRNIK 890
I + G+I+N+ + G+ K + ++ L E I+
Sbjct: 122 SQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIR 181
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIF 936
V I G ++ + ++VP+ T +EI+ +
Sbjct: 182 VNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYY 230
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 170 bits (434), Expect = 6e-48
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 3/211 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKL 772
NK VTGSS G+G+ L G + + AR ++ ++V K
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKA 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+V +K++ +++ G +D+ VNNA + + + W+ +N+N K +L C
Sbjct: 62 NVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCA 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
M GHI++ISS +R +K +E ++ L E+S + I V
Sbjct: 122 QEAAKLME-KNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVN 180
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+ G + T+ L H +R+ + D + P
Sbjct: 181 AVSGGAIDTDALKHFPNREDL-LEDARQNTP 210
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 170 bits (433), Expect = 6e-48
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 2/197 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
KV VTG+ IG L G + + + LE + S++ D
Sbjct: 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCD 64
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
VT E V V V+ + G ID L NNAG F ++ Y +++ ++ +N+ G H +
Sbjct: 65 VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVL 124
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ M+ ++ G I+N +S AGV+ +A Y +K I ++ +++ NI+V
Sbjct: 125 KAVSRQMI-TQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVN 183
Query: 893 CIQAGDVKTELLSHSTD 909
I G + +
Sbjct: 184 AISPGYMGPGFMWERQV 200
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 170 bits (433), Expect = 8e-48
Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 3/198 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIVKK 771
L+ V VTG SSGIG V+ L+ GA V AR +RL +++L + +
Sbjct: 6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASV 65
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV V+ LG ILVNNAG + + E W+ + + V+H
Sbjct: 66 CDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHP 125
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ LP + I+ ++S +P + + + ++ + ++ E + + ++V
Sbjct: 126 VRAFLPQLESRAD-AAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRV 184
Query: 892 TCIQAGDVKTELLSHSTD 909
I G V++ +
Sbjct: 185 NGILIGLVESGQWRRRFE 202
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 169 bits (431), Expect = 1e-47
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 7/202 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV +TG+ SG GE + K GAKVV V R E + + + + D
Sbjct: 7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---GDAALAVAAD 63
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
++ E DV V L++ G +DILVNNAG+ + E + EE++ ++ VN++GV
Sbjct: 64 ISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMT 123
Query: 833 GNILPSMLHS---RRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
++P + + ILN++S RP LA Y TK ++ ++ AL E++ I
Sbjct: 124 SKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAPAKI 183
Query: 890 KVTCIQAGDVKTELLSHSTDRD 911
+V + +T LL+ D
Sbjct: 184 RVVALNPVAGETPLLTTFMGED 205
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 169 bits (430), Expect = 2e-47
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 4/210 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L + V VTG+++GIG + GA VV + + E + +++ A G I + +
Sbjct: 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECN 69
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT E + V++ L + G I +LVNNAG + ++ +N+ +
Sbjct: 70 VTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQ 128
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
P M G ILNISS AG +A Y +K + ++ + +V I+V
Sbjct: 129 LAAPHMQ-KAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNA 187
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I G +KT+ L+ ++ + K P
Sbjct: 188 IAPGAIKTDALATVLTPEIERA--MLKHTP 215
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 168 bits (428), Expect = 2e-47
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 6/197 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---II 768
L +VI VTG++ GIG + GA VV + R L + +++A II
Sbjct: 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLII 69
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKG 827
L+ +++ V E G +D L++NA ++ T +E+ E++ +++VN+
Sbjct: 70 ALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNA 129
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD- 886
+LP + S I SS+ G + A Y +K+ EG+ L E+
Sbjct: 130 TFMLTRALLPLLKRSED-ASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELEGV 188
Query: 887 RNIKVTCIQAGDVKTEL 903
++ I G +T +
Sbjct: 189 TAVRANSINPGATRTGM 205
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 170 bits (433), Expect = 2e-47
Identities = 49/229 (21%), Positives = 102/229 (44%), Gaps = 4/229 (1%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVK 770
N+ KV F+TG +G+G+ + L +LGA+ V +R++D L+ + + G +
Sbjct: 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAI 81
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+ DV + V+ V E++ GH +I++NNA + + E+ W + ++ + G
Sbjct: 82 QCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAF 141
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
I ++ +++ L+I++ + K +E +S +L E ++
Sbjct: 142 VTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMR 201
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIF 936
IQ G +KT+ D + ++ +P T +E++ F
Sbjct: 202 FNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAF 250
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 168 bits (429), Expect = 3e-47
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 4/213 (1%)
Query: 714 LANKVIFVTG-SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKK 771
L KV+ VT + +GIG + + GA VV RL + L + G +
Sbjct: 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVV 79
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT V ++ + + + G +D+LVNNAG+ T + EEW+ ++NV + V+
Sbjct: 80 CDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRA 139
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
L G I+N +S G R + Y K + ++ E + +++
Sbjct: 140 TRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRI 199
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ + + L ++ +++D+ ++
Sbjct: 200 NAVSPSIARHKFLEKTSSSELLDR--LASDEAF 230
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 168 bits (427), Expect = 3e-47
Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 6/196 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---II 768
+ L +++I VTG+S GIG + GA V+ + R ++L + + + G
Sbjct: 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWF 67
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKG 827
+ L + +++ + + +D +++NAG++ M + + W ++ VN+
Sbjct: 68 ILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNA 127
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
+LP +L S G ++ SS+ G + A Y +K+ EG+ L E +
Sbjct: 128 TFMLTQALLPLLLKSDA-GSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQ-Q 185
Query: 888 NIKVTCIQAGDVKTEL 903
++V CI G +T +
Sbjct: 186 RLRVNCINPGGTRTAM 201
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 168 bits (429), Expect = 3e-47
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 7/227 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K + VTG + GIG +V++ GA + AR L + Q + D
Sbjct: 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCD 71
Query: 774 VTIENDVKKVVREVLAELGH-IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
++ + +K+++ V + G +DIL+NN G + Y E+++ I+ N++ H
Sbjct: 72 ASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLS 131
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P + S G+I+ +SS AGV + ++Y+ TK + ++ L E + I+
Sbjct: 132 QLAHPLLKASGC-GNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRAN 190
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIF 936
+ + T L D + + P +E+S + F
Sbjct: 191 AVAPAVIATPLAEAVYDDEFKKV--VISRKPLGRFGEPEEVSSLVAF 235
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 168 bits (428), Expect = 3e-47
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 22/237 (9%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIVKK 771
+ KV VTG++ GIG + L+ GAKV V ++ K +L Q P + +
Sbjct: 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 64
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV + ++ R+V+ G +DILVNNAGV + W + +N+ V+
Sbjct: 65 CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN--------NEKNWEKTLQINLVSVISG 116
Query: 832 IGNILPSML--HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI--SGALRQEVSDR 887
L M + G I+N+SS AG+ P A VY +K+ I G S AL + +
Sbjct: 117 TYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNS 176
Query: 888 NIKVTCIQAGDVKTELLSHSTDRDVVDKYD-----ISKAVP---VLTTKEISQSIIF 936
+++ I G V T +L + + +Y I + +L I+ +I
Sbjct: 177 GVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLIT 233
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 168 bits (429), Expect = 4e-47
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 7/194 (3%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSIIVK 770
LA KV TG+ GIG + +L GA VV V E + L+ +
Sbjct: 18 PLAGKVALTTGAGRGIGRGIAIELGRRGASVV-VNYGSSSKAAEEVVAELKKLGAQGVAI 76
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+ D++ ++V + + ++ G +D +++N+G+ + + E ++ + N+N +G
Sbjct: 77 QADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFF 136
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
L RR G I+ SS A V A+Y G+K +EG A + + +
Sbjct: 137 VAQQGLKHC---RRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGV 193
Query: 890 KVTCIQAGDVKTEL 903
V CI G VKT++
Sbjct: 194 TVNCIAPGGVKTDM 207
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 168 bits (429), Expect = 4e-47
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA---PGSIIVK 770
++ VTG SGIG+ + LV GA V+ V R D+L L+ G+I +
Sbjct: 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYE 68
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVL 829
D+T E++ + V V A G + +V+ AG + + E W +++N+ G +
Sbjct: 69 PTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTM 128
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ + + M+ G + ISS A Y TK ++ + E+ +
Sbjct: 129 YVLKHAAREMV-RGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGASWV 187
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+V I+ G ++T+L++ T+ + D + P
Sbjct: 188 RVNSIRPGLIRTDLVAAITESAELSS-DYAMCTP 220
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 168 bits (428), Expect = 5e-47
Identities = 52/193 (26%), Positives = 99/193 (51%), Gaps = 5/193 (2%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKK 771
+LA K FVTG S GIG + K L GA V +R + + + ++ A G + +
Sbjct: 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIR 87
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D +++ +RE + LG +DILVN+AG+ + +E+ + +++ ++ VN +
Sbjct: 88 ADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVA 147
Query: 832 IGNILPSMLHSRRPGHILNISSN-AGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
I + + G I+ I SN A + P+ G+++Y+ +K + G++ L +++ R I
Sbjct: 148 IRSASRHL---GDGGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGIT 204
Query: 891 VTCIQAGDVKTEL 903
V + G T++
Sbjct: 205 VNIVHPGSTDTDM 217
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 168 bits (427), Expect = 6e-47
Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 2/191 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L VTG S GIG +V++L LGA+V +R L+ + ++ D
Sbjct: 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCD 78
Query: 774 VTIENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+ + K+++ V G ++ILVNNAGV+ + + +++N ++ N + H
Sbjct: 79 LLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLS 138
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P + S+ G+++ +SS AG +++Y+ +K I ++ +L E + NI+V
Sbjct: 139 QIAYPLLKASQN-GNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVN 197
Query: 893 CIQAGDVKTEL 903
+ G + T L
Sbjct: 198 SVAPGVILTPL 208
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 167 bits (426), Expect = 6e-47
Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 2/191 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L VTG S GIG +V++L +LGA V +R L + T ++ + D
Sbjct: 7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCD 66
Query: 774 VTIENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
++ ++ ++++ V G ++ILVNNAG++ + + Y +E+++ ++++N + H
Sbjct: 67 LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLS 126
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P + S R G+++ ISS +G AVY TK ++ ++ L E + NI+V
Sbjct: 127 VLAHPFLKASER-GNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVN 185
Query: 893 CIQAGDVKTEL 903
+ G + T L
Sbjct: 186 GVGPGVIATSL 196
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 168 bits (428), Expect = 6e-47
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 9/193 (4%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI----- 767
+L K +F++G S GIG + K + GA V VA+ + L ++ A I
Sbjct: 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65
Query: 768 --IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNI 825
+ D+ + V V + + + G IDI VNNA + +E+ L+ ++ M + +
Sbjct: 66 QALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQV 125
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-FAGLAVYTGTKYFIEGISGALRQEV 884
+G + +P M HIL +S + P + Y KY + + + +E+
Sbjct: 126 RGTYAVSQSCIPHMKGRDN-PHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEEL 184
Query: 885 SDRNIKVTCIQAG 897
D I +
Sbjct: 185 RDAGIASNTLWPR 197
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 167 bits (426), Expect = 8e-47
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 10/192 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI----- 767
TL+ K +F+TG+S GIG + GA V A+ L ++ +A ++
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62
Query: 768 --IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNI 825
+ K D+ E+ V+ V + G IDILVNNA ++ ++ ++ M VN
Sbjct: 63 QGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNA 122
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--FAGLAVYTGTKYFIEGISGALRQE 883
+G C LP +L + HIL ++ + P + YT K + ++ L E
Sbjct: 123 RGSFVCAQACLPHLLQAPN-PHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAE 181
Query: 884 VSDRNIKVTCIQ 895
+ + + +
Sbjct: 182 FGPQGVAINALW 193
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 167 bits (426), Expect = 1e-46
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 7/194 (3%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSIIVK 770
+L KV VTG+ GIG ++ +L G KV+ V A + E + +++
Sbjct: 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVI-VNYANSTESAEEVVAAIKKNGSDAACV 84
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
K +V + D+ ++ E + G +DI+ +N+GV+ F ++ EE++ + +N +G
Sbjct: 85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF 144
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ G ++ + S G AVY+G+K IE + + +++D+ I
Sbjct: 145 VAREAYKHL---EIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKI 201
Query: 890 KVTCIQAGDVKTEL 903
V + G +KT++
Sbjct: 202 TVNVVAPGGIKTDM 215
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 166 bits (424), Expect = 1e-46
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 2/192 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
++ KV +TGSSSGIG + + GA +V VAR++DRL SL+ G ++ +
Sbjct: 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAV 64
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV V VV V + G DILVNNAG + + E+W + + +
Sbjct: 65 DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLA 124
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
++P M +R G I++ +S V+P +Y TK + S L EV NI+V
Sbjct: 125 RGLVPGMR-ARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRVN 183
Query: 893 CIQAGDVKTELL 904
CI G + T
Sbjct: 184 CINPGLILTPDW 195
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 166 bits (423), Expect = 1e-46
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 3/204 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV +TG + GIG + V GAKV+ R D E S+ P I + D
Sbjct: 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV-GTPDQIQFFQHD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ E+ K+ G + LVNNAG+ +E+ EW ++ VN+ GV
Sbjct: 63 SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTR 122
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI--SGALRQEVSDRNIKV 891
+ M + I+N+SS G L Y +K + + S AL + D +++V
Sbjct: 123 LGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRV 182
Query: 892 TCIQAGDVKTELLSHSTDRDVVDK 915
+ G +KT L+ +
Sbjct: 183 NTVHPGYIKTPLVDDLPGAEEAMS 206
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 166 bits (423), Expect = 1e-46
Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 4/211 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +K+ +TG ++GIG + + GA + + +++N ++ K D
Sbjct: 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADL--VPAPEAEAAIRNLGRRVLTVKCD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ DV+ ++V++ G DILVNNAG+ ++ E+W +N+
Sbjct: 63 VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAK 122
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+P M G I+N++S Y TK G + AL ++ I V
Sbjct: 123 AFVPGMK-RNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNA 181
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
I V+T S + + +
Sbjct: 182 IAPSLVRTATTEASAL-SAMFDVLPNMLQAI 211
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 166 bits (422), Expect = 1e-46
Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 16/221 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ K ++VTG+ GIG V GAKV + + + +D
Sbjct: 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ----------EQYPFATEVMD 54
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V V +V + +LAE +D LVN AG++ ++ E+W VN+ G +
Sbjct: 55 VADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQ 114
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ +R G I+ ++S+A P G++ Y +K ++ ++ ++ E++ ++
Sbjct: 115 QTMNQFR-RQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNV 173
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934
+ G T++ R + D + ++ I
Sbjct: 174 VSPGSTDTDMQ-----RTLWVSDDAEEQRIRGFGEQFKLGI 209
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 166 bits (422), Expect = 2e-46
Identities = 65/214 (30%), Positives = 95/214 (44%), Gaps = 9/214 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
NKV VTGS GIG+ + L GA VV + E + + G+ I +D
Sbjct: 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFT---LMEKYKLEEWNAMINVNIKGVLH 830
V+ K + LAE G ID LVNNA + + E + ++VN+ G L
Sbjct: 67 VSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALW 126
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
C + M R G I+N SS A Y K I G++ L +E+ RNI+
Sbjct: 127 CTRAVYKKMT-KRGGGAIVNQSSTAAWL---YSNYYGLAKVGINGLTQQLSRELGGRNIR 182
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ I G + TE +T +++VD I K +P+
Sbjct: 183 INAIAPGPIDTEANRTTTPKEMVDD--IVKGLPL 214
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 166 bits (424), Expect = 2e-46
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 4/191 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +V VTG SGIG + GA VV D + + ++D
Sbjct: 25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---GSKAFGVRVD 81
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ D + +V + A+ G +D+LVNNAG + E W+ +++VN+KG+ C
Sbjct: 82 VSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSK 141
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
++P M + G I+N +S A Y +K I ++ A+ + + I+V
Sbjct: 142 YVIPVMRRNGG-GSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNA 200
Query: 894 IQAGDVKTELL 904
+ G + +
Sbjct: 201 VAPGTIDSPYF 211
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 166 bits (422), Expect = 2e-46
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 12/201 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
KV VTG++ GIG +V L GA+V R + + + + D
Sbjct: 26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-----------ADLHLPGD 74
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ + V A LG +DI+VNNAGV+ + + +W+ + VN++
Sbjct: 75 LREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICR 134
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+P M + G I+N++S G+RP G A+Y TK + ++ + + + + I++
Sbjct: 135 AAIPLMAAAGG-GAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIRINA 193
Query: 894 IQAGDVKTELLSHSTDRDVVD 914
+ +V T +L + D
Sbjct: 194 VCPNEVNTPMLRTGFAKRGFD 214
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 165 bits (420), Expect = 4e-46
Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 4/200 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
N L+ K + +TG + G+G + + V GA+VV + L + +
Sbjct: 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---GDAARYQH 57
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
LDVTIE D ++VV E G +D LVNNAG+ +E +E + ++ +N+ GV
Sbjct: 58 LDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIG 117
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ ++P+M + G I+NISS AG+ A + Y +K+ + G+S E+ I+V
Sbjct: 118 MKTVIPAMKDAGG-GSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRV 176
Query: 892 TCIQAGDVKTELLSHSTDRD 911
+ G T + + + R
Sbjct: 177 NSVHPGMTYTPMTAETGIRQ 196
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 164 bits (417), Expect = 6e-46
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 8/190 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA + + VTG+ GIG V+ L GA+VVAV+R L++L I +D
Sbjct: 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----PGIEPVCVD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ ++ + +G +D+LVNNA V + E ++ VN++ V+
Sbjct: 61 LGDWEATERAL----GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQ 116
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ ++ PG I+N+SS R +VY TK ++ ++ + E+ I+V
Sbjct: 117 IVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNA 176
Query: 894 IQAGDVKTEL 903
+ V T +
Sbjct: 177 VNPTVVMTSM 186
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 165 bits (420), Expect = 7e-46
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 4/198 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA KV VTG+ +GIG + + L G V+ D + T + ++D
Sbjct: 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---GCGAAACRVD 83
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ E + +V +A G +D LV NAGV++ + +E+++ +I +N++G C
Sbjct: 84 VSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTK 143
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ P M+ G I+N+SS AG G Y +K I +S E+ I+
Sbjct: 144 HAAPRMIERGG-GAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNT 202
Query: 894 IQAGDVKTELLSHSTDRD 911
+ V T + +
Sbjct: 203 LLPAFVDTPMQQTAMAMF 220
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 163 bits (416), Expect = 8e-46
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ VTG+ GIG VK L GAKVVAV R L SL I +D
Sbjct: 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV----SLAKECPGIEPVCVD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ + +K + +G +D+LVNNA ++ + E ++ +VN++ V
Sbjct: 61 LGDWDATEKAL----GGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQ 116
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ M++ PG I+N+SS F L Y+ TK + ++ A+ E+ I+V
Sbjct: 117 MVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNS 176
Query: 894 IQAGDVKTEL 903
+ V T++
Sbjct: 177 VNPTVVLTDM 186
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 164 bits (418), Expect = 8e-46
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 7/195 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSIIV 769
L KV VTGS GIG + L LGAKVV V A E + + ++ I
Sbjct: 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVV-VNYANSTKDAEKVVSEIKALGSDAIA 72
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
K D+ ++ K+ + +A GH+DI V+N+GV+ F ++ EE++ + ++N +G
Sbjct: 73 IKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQF 132
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ G I+ SSN ++Y+G+K ++ ++ D+
Sbjct: 133 FVAREAYRHL---TEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKK 189
Query: 889 IKVTCIQAGDVKTEL 903
I V + G T++
Sbjct: 190 ITVNAVAPGGTVTDM 204
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 164 bits (418), Expect = 1e-45
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 4/200 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKK 771
++V+ +TG SG+G L GAK+ V + LE K ++ ++
Sbjct: 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 70
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLH 830
DV+ E V+ V G ID NNAG+ E + E++ ++++N++GV
Sbjct: 71 ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFL 130
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ +L M G ++N +S G+R + Y K+ + G++ E I+
Sbjct: 131 GLEKVLKIMREQGS-GMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIR 189
Query: 891 VTCIQAGDVKTELLSHSTDR 910
+ I G + T ++ +S +
Sbjct: 190 INAIAPGAIWTPMVENSMKQ 209
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 163 bits (416), Expect = 1e-45
Identities = 64/237 (27%), Positives = 113/237 (47%), Gaps = 15/237 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPG-SIIVKK 771
L KV VTGS+SGIG + L GA +V +E ++ L G ++
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D++ V+ +V + ++G IDILVNNAG+ + L+E + E+W+A++ +N+ V H
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHG 121
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
LP M + G I+NI+S G+ A + Y K+ + G + E + + I
Sbjct: 122 TAAALPHMK-KQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITA 180
Query: 892 TCIQAGDVKTELL---------SHSTDRDVVDKYDISKAVPV---LTTKEISQSIIF 936
I G V+T L+ + D++ + +S+ P +T +++ + +F
Sbjct: 181 NAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVF 237
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 164 bits (417), Expect = 1e-45
Identities = 61/248 (24%), Positives = 118/248 (47%), Gaps = 14/248 (5%)
Query: 699 SISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENL 756
S + GT N+ F + V+ VTG S GIG + + G +V V A + + +
Sbjct: 9 SGVDLGTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVG-VNYAANREAADAV 67
Query: 757 KTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLE 815
++ + G + DV D+ + V + G +D LVNNAG++ + +++ +E
Sbjct: 68 VAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVE 127
Query: 816 EWNAMINVNIKGVLHCIGNILPSML--HSRRPGHILNISSNAGVRPFAG-LAVYTGTKYF 872
M+ VN+ G + C + M +S + G I+N+SS A + A Y +K
Sbjct: 128 RIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAA 187
Query: 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL----TTK 928
I+ + L +EV+ I+V ++ G ++T+L + D + ++ +VP + +
Sbjct: 188 IDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRARE--MAPSVP-MQRAGMPE 244
Query: 929 EISQSIIF 936
E++ +I++
Sbjct: 245 EVADAILY 252
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 163 bits (414), Expect = 2e-45
Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 5/198 (2%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENL-KTSLQNAPGSIIVKKLDV 774
++V VTG+SSG G + + G +V A+ + LE +T ++ + DV
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADV 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVM---YFTLMEKYKLEEWNAMINVNIKGVLHC 831
E DV + + + G ID+LVNNAG+ ++ +E+++ ++ VN++G+
Sbjct: 62 ADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLG 121
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+LP ML G I+NI+S A + F G + YT +K + ++ ++ + + I+
Sbjct: 122 CRAVLPHMLLQGA-GVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRC 180
Query: 892 TCIQAGDVKTELLSHSTD 909
+ G ++T + D
Sbjct: 181 NAVCPGMIETPMTQWRLD 198
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 163 bits (416), Expect = 3e-45
Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 6/218 (2%)
Query: 699 SISNAGTVNIVFGN--TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENL 756
S + GT N+ F + + V +TG+ SGIG L G V A+ R +E +
Sbjct: 9 SGVDLGTENLYFQSMMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEV 68
Query: 757 KTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLE 815
+ A G I + DV+ E ++ VR+++ + GH+DI+V NAG+ + ++ K
Sbjct: 69 ADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPF 128
Query: 816 EWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA--GLAVYTGTKYFI 873
EW+ I VN++G + +P + R G I+ +SS G R F G YT TK
Sbjct: 129 EWDETIAVNLRGTFLTLHLTVPYLK-QRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQ 187
Query: 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD 911
I L E+ +I+V + G ++T + ++ R
Sbjct: 188 VAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRH 225
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 163 bits (414), Expect = 4e-45
Identities = 58/239 (24%), Positives = 109/239 (45%), Gaps = 15/239 (6%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPG-SIIV 769
++ K +TGS+SGIG + + L GA +V D + + + +++
Sbjct: 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLH 80
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
D+T +++ ++ V G DILVNNAGV + +E + +E+W+ +I VN+
Sbjct: 81 HPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSF 140
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
H I +P M + G I+NI+S G+ + Y K+ I G++ + EV++ +
Sbjct: 141 HTIRGAIPPMK-KKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGV 199
Query: 890 KVTCIQAGDVKTELL---------SHSTDRDVVDKYDISKAVPV---LTTKEISQSIIF 936
V I G V T L+ + + V + K P +T ++++ ++
Sbjct: 200 TVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALY 258
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 163 bits (414), Expect = 4e-45
Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 5/229 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS-IIVK 770
+ L +KV F+TG SGIG ++ + + G V +R + R+ L A G +
Sbjct: 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPL 82
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+DV V V + L E G IDIL+N A + + +++++ G +
Sbjct: 83 SMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFN 142
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ G I+NI++ G R A K ++ ++ L E +NI+
Sbjct: 143 VSRVLYEKFF-RDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIR 201
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIF 936
V + G + A P+ EI+ S+++
Sbjct: 202 VNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLY 250
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 162 bits (413), Expect = 5e-45
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 7/199 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
A KV+ VTG GIG +V+ V GA+VV + L+ L A + D
Sbjct: 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGA----VFILCD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCI 832
VT E+DVK +V E + G +D +VNNAG E+ + + ++ +N+ G
Sbjct: 63 VTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLT 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP + + G+++NISS G A Y TK + ++ AL + S ++V
Sbjct: 123 KLALPYLR--KSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVN 180
Query: 893 CIQAGDVKTELLSHSTDRD 911
CI G++ T L
Sbjct: 181 CISPGNIWTPLWEELAALM 199
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 161 bits (411), Expect = 6e-45
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 4/197 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV V+G + G+G V+ +V GAKVV + + + L + LD
Sbjct: 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---ADAARYVHLD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT K V + G + +LVNNAG++ +E Y L EW +++VN+ GV I
Sbjct: 62 VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIR 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
++ M + R G I+NISS G+ YT TK+ + G++ + E+ I+V
Sbjct: 122 AVVKPMKEAGR-GSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNS 180
Query: 894 IQAGDVKTELLSHSTDR 910
I G VKT + +
Sbjct: 181 IHPGLVKTPMTDWVPED 197
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 161 bits (411), Expect = 6e-45
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 4/210 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
TL K VTGS+SGIG + + L GA +V + +
Sbjct: 1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGF--GDPAPALAEIARHGVKAVHHPA 58
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D++ ++ + E G +DILVNNAG+ + +E++ LE W+ +I +N+ V H
Sbjct: 59 DLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGT 118
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP M +R G I+NI+S G+ G A Y K+ + G++ + E + N+
Sbjct: 119 RLALPGMR-ARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCN 177
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAV 922
I G V T L+ D D
Sbjct: 178 AICPGWVLTPLVQKQID-DRAANGGDPLQA 206
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 162 bits (412), Expect = 6e-45
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 6/205 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L NKV +TG+ GIG + + L GA+VV L + + +D
Sbjct: 9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGA---AASVGRGAVHHVVD 65
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGVLHC 831
+T E V+ ++ + G +DI+ NNA L+ + ++ W+ VN +G +
Sbjct: 66 LTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLM 125
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+P ++ + G I+NISS + Y TK IE ++ + + ++
Sbjct: 126 CKYAIPRLISAGG-GAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVRC 184
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKY 916
I G V+T L + +VD +
Sbjct: 185 NAIAPGLVRTPRLEVGLPQPIVDIF 209
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 161 bits (411), Expect = 6e-45
Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 23/251 (9%)
Query: 693 TNKQGISISNAGTVNIVFGN--TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI 750
+ S + GT N+ F + KV+ +TG+S GIG LV+ +VVA +R I
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSI 62
Query: 751 DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLME 810
A I D++ ++VRE + G ID LVNNAGV
Sbjct: 63 KPS---------ADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFV 113
Query: 811 KYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA--VYTG 868
+ E+++ + VN+ G H ML + GHI++I+++ +P G+ + +
Sbjct: 114 EMTQEDYDHNLGVNVAGFFHITQRAAAEML-KQGSGHIVSITTSLVDQPMVGMPSALASL 172
Query: 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL--- 925
TK + ++ +L E S ++V + G +KT + + ++ PV
Sbjct: 173 TKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPM----HPAETHST--LAGLHPVGRMG 226
Query: 926 TTKEISQSIIF 936
+++ ++++
Sbjct: 227 EIRDVVDAVLY 237
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 162 bits (412), Expect = 7e-45
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 13/204 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-------------ARRIDRLENLKTSL 760
L +V F+TG++ G G + GA ++AV D L +
Sbjct: 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV 68
Query: 761 QNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAM 820
+ A I+ +D + ++KVV + +A LG +DI+V NAGV + E++ +
Sbjct: 69 EAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDV 128
Query: 821 INVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGAL 880
+++N+ G + + P ++ R G I+ ISS AG++ + YT +K+ + G++ A
Sbjct: 129 MDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAF 188
Query: 881 RQEVSDRNIKVTCIQAGDVKTELL 904
E+ +I+V + G V T +
Sbjct: 189 AAELGKHSIRVNSVHPGPVNTPMG 212
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 161 bits (411), Expect = 1e-44
Identities = 49/245 (20%), Positives = 112/245 (45%), Gaps = 22/245 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-------------ARRIDRLENLKTSL 760
L +V F+TG++ G G L GA ++A + L+ +
Sbjct: 13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLV 72
Query: 761 QNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAM 820
++ + + LDV + ++++V + + + G +D++V NAGV+ + + + E+W+ +
Sbjct: 73 EDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTV 132
Query: 821 INVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGAL 880
I VN+ G + +P+M+ + G I+ +SS+AG++ G Y+ +K+ + ++ L
Sbjct: 133 IGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTL 192
Query: 881 RQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKA---------VPVLTTKEIS 931
E+ + I+V I V+T ++ ++ ++ +T E++
Sbjct: 193 AIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVA 252
Query: 932 QSIIF 936
+ +
Sbjct: 253 DVVAW 257
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 161 bits (409), Expect = 2e-44
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +V +TG +SG+G LV V GA+V + + +RL L+ + G+ + D
Sbjct: 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---GGNAVGVVGD 59
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLM-----EKYKLEEWNAMINVNIKGV 828
V D K+ LA G ID L+ NAG+ ++ E ++ + +VN+KG
Sbjct: 60 VRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGY 119
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+H + LP+++ SR G ++ SNAG P G +YT TK+ + G+ + E++ +
Sbjct: 120 IHAVKACLPALVSSR--GSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELA-PH 176
Query: 889 IKVTCIQAGDVKTELLSHSTD 909
++V + G + T+L S+
Sbjct: 177 VRVNGVAPGGMNTDLRGPSSL 197
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 160 bits (407), Expect = 2e-44
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 4/193 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L N+V VTG + IG V L GA+V+ L+ + +D
Sbjct: 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMD 70
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
VT V+ VR V + G +DILV AG+ E +W +++N+ G+
Sbjct: 71 VTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSC 130
Query: 833 GNILPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ ML ++ G I+ I S +G V A Y +K + +L E + I+
Sbjct: 131 QAVGRIML-EQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIR 189
Query: 891 VTCIQAGDVKTEL 903
+ ++T L
Sbjct: 190 ANAVAPTYIETTL 202
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 161 bits (409), Expect = 3e-44
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 8/197 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---IIVK 770
+ K + +TGSS+GIG GA+V R DRLE K + A I
Sbjct: 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAV 83
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGV 828
DVT + ++ LA+ G IDILVNNAG T +E + +N + V
Sbjct: 84 VADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAV 143
Query: 829 LHCIGNILPSMLHSRRPGHILNISS-NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
+ ++ ++ G I+N+SS AG + +G Y K ++ + ++
Sbjct: 144 IEMTQKTKEHLIKTK--GEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQH 201
Query: 888 NIKVTCIQAGDVKTELL 904
++V + G V T +
Sbjct: 202 GVRVNSVSPGAVATGFM 218
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 159 bits (405), Expect = 4e-44
Identities = 45/215 (20%), Positives = 81/215 (37%), Gaps = 9/215 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVK 770
N+ I V G+ IG GA V + + ++ S +
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAI 63
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVL 829
K D+T +V+ + + G I LV+ AG + + + W+ +++VN+ +
Sbjct: 64 KADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLF 123
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
LP M G I+ SS AG G Y +K + + L +EV +
Sbjct: 124 LTAKTALPKMAKG---GAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGPK- 179
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I+V + G + T T +V ++ ++ A
Sbjct: 180 IRVNAVCPGMISTTFHDTFTKPEVRER--VAGATS 212
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 159 bits (404), Expect = 5e-44
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 7/191 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
A K + VTG + GIG + + GA V R + E + A G + +D
Sbjct: 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-----VAEAIGGAFFQ-VD 57
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ E + + V E LG +D+LVNNA + +L EW ++ VN+ +H
Sbjct: 58 LEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSA 117
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
M G I+N++S G+ A Y +K + ++ +L +++ I+V
Sbjct: 118 LAAREMRKVGG-GAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNA 176
Query: 894 IQAGDVKTELL 904
+ G + TE +
Sbjct: 177 VAPGAIATEAV 187
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 159 bits (405), Expect = 5e-44
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 12/209 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+KV VTG SSGIG +V LV GAKVV+V+ N+ K+D
Sbjct: 12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF----------KID 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT E +VK+ V + + G IDILVNNAG+ ++ + E W +I+VN+ G
Sbjct: 62 VTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAK 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+P ML G I+NI+S A Y +K+ + G++ ++ + + I+
Sbjct: 122 YTIPVMLAIGH-GSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYA-PKIRCNA 179
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAV 922
+ G + T ++ + +V + + +
Sbjct: 180 VCPGTIMTPMVIKAAKMEVGEDENAVERK 208
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 159 bits (405), Expect = 6e-44
Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 2/192 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ K +TG+S+GIG+++ GA+V AR D L+ + + G + + D
Sbjct: 30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCD 89
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + V+ ++ ++ ELG IDI V NAG++ M LEE+ + + N+ GV
Sbjct: 90 VTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQ 149
Query: 834 NILPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+M+ G I+ +S +G + ++ Y +K + ++ A+ E++ I+V
Sbjct: 150 AAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRV 209
Query: 892 TCIQAGDVKTEL 903
+ G ++TEL
Sbjct: 210 NSVSPGYIRTEL 221
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 159 bits (404), Expect = 8e-44
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 24/215 (11%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---II 768
A KV +TGSS+GIG GAKV R +RLE + + A S +
Sbjct: 2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVN 61
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVN 824
DVT + +++ L + G +DILVNNAG +E ++A +N+N
Sbjct: 62 SVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLN 121
Query: 825 IKGVLHCIGNILPSMLHSRRPGHILNISS-NAGVRPFAGLAVYTGTKYFIEGISGALRQ- 882
++ V+ +P + ++ G I+NISS +G+ Y+ K A+ Q
Sbjct: 122 LRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHATPDFPYYSIAK-------AAIDQY 172
Query: 883 ------EVSDRNIKVTCIQAGDVKTELLSHSTDRD 911
++ I+V I G V T S +
Sbjct: 173 TRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPE 207
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 158 bits (402), Expect = 1e-43
Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 10/217 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKL 772
L K + +TGSS GIG + GAKV R+ ++ S++ G
Sbjct: 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAA 64
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHC 831
D+ +++V E +A+ G ID+L+NNAG + + + ++A+++ NI+ V+
Sbjct: 65 DLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMT 124
Query: 832 IGNILPSML----HSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSD 886
LP + S + +++ S AG G +Y K F+ + +
Sbjct: 125 TKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFHTK 184
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
++ + G V T + T DV D+ IS +P
Sbjct: 185 DGVRFNIVSPGTVDTAFHADKTQ-DVRDR--ISNGIP 218
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 158 bits (403), Expect = 1e-43
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 3/200 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K+ VTG+SSGIG GAKVV AR + L L + G D
Sbjct: 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGD 65
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
V E + +V + G +D NNAG + + +E W ++ N+
Sbjct: 66 VGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAA 125
Query: 833 GNILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+P++ G + SS G FAG+A Y +K + G+ AL E+ R I+V
Sbjct: 126 KYQVPAIAALGG-GSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRV 184
Query: 892 TCIQAGDVKTELLSHSTDRD 911
+ G T +
Sbjct: 185 NALLPGGTDTPANFANLPGA 204
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 158 bits (402), Expect = 2e-43
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 10/210 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA---PGSIIVK 770
+NK + +TGSS+GIG GA V R +RLE + + + +
Sbjct: 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSV 63
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEE----WNAMINVNIK 826
DVT E+ +++ L + G ID+LVNNAG ++ ++ + +N++
Sbjct: 64 VADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQ 123
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSN-AGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
V+ + P ++ S+ G I+N+SS AG + Y K ++ + + +++
Sbjct: 124 AVIEMTKKVKPHLVASK--GEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLA 181
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDK 915
I+V + G V+T + D +
Sbjct: 182 KFGIRVNSVSPGMVETGFTNAMGMPDQASQ 211
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 156 bits (398), Expect = 2e-43
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 7/187 (3%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
N+ + VTG GIG+Q+ D + G KV + R + N DV
Sbjct: 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNL----FYFHGDVA 57
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+KK V + +L ID+LVNNA ++ EE++ +++V +K
Sbjct: 58 DPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLC 117
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
++ ++ G I+NI+S + Y K I ++ AL + ++ V CI
Sbjct: 118 RDELIKNK--GRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLG-PDVLVNCIA 174
Query: 896 AGDVKTE 902
G +
Sbjct: 175 PGWINVT 181
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 155 bits (394), Expect = 7e-43
Identities = 37/192 (19%), Positives = 80/192 (41%), Gaps = 14/192 (7%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ A VTG S GIG+ +V+ L+ V + I + + ++ K
Sbjct: 1 SNAMANYLVTGGSKGIGKAVVELLLQNKNHTV-INIDIQQ--------SFSAENLKFIKA 51
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D+T + D+ V+ + D + NAG++ + +E ++++N+ ++ I
Sbjct: 52 DLTKQQDITNVLDI--IKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFI 109
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ ++ + I+ S+ YT +K I ++ +L +++ I+V
Sbjct: 110 KGLENNL---KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVN 166
Query: 893 CIQAGDVKTELL 904
+ G V T+L
Sbjct: 167 TVCPGTVDTDLY 178
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 157 bits (399), Expect = 8e-43
Identities = 52/234 (22%), Positives = 105/234 (44%), Gaps = 11/234 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ-----NAPGS 766
L +V VTG ++GIG+ +VK+L+ LG+ VV +R+++RL++ LQ
Sbjct: 14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQAR 73
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIK 826
+I + ++ E +V +V+ L G I+ LVNN G + + E + W+A++ N+
Sbjct: 74 VIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLT 133
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
G + + S + G I+NI F + + ++ +L E +
Sbjct: 134 GTFYMCKAVYSSWM-KEHGGSIVNIIV-PTKAGFPLAVHSGAARAGVYNLTKSLALEWAC 191
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVL---TTKEISQSIIF 936
I++ C+ G + ++ + ++ + +P +E+S + F
Sbjct: 192 SGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCF 245
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 156 bits (397), Expect = 8e-43
Identities = 59/231 (25%), Positives = 115/231 (49%), Gaps = 10/231 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +KV +TG + GIGE K V GAKVV D + + ++ +P I D
Sbjct: 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI-GSPDVISFVHCD 72
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTL--MEKYKLEEWNAMINVNIKGVLHC 831
VT + DV+ +V +A+ G +DI+ N GV+ T + + E++ ++++N+ G
Sbjct: 73 VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV 132
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLA-VYTGTKYFIEGISGALRQEVSDRNIK 890
+ M+ +++ G I+ +S + G++ VYT TK+ + G++ +L E+ + I+
Sbjct: 133 AKHAARVMIPAKK-GSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIR 191
Query: 891 VTCIQAGDVKTELLSH--STDRDVVDKYDISKAVP---VLTTKEISQSIIF 936
V C+ V + LL+ D V++ A +L ++++ ++ +
Sbjct: 192 VNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAY 242
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 156 bits (397), Expect = 8e-43
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 3/213 (1%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
+ + FVTG SSGIG + + L G V AR + L+ A +
Sbjct: 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSS 79
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT ++V V + G I ILVN+AG W +++ N+ GV
Sbjct: 80 CDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRV 139
Query: 832 IGNILPS--MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+L + M G I+NI+S G + A YT +K+ + G + ++ E++ I
Sbjct: 140 TREVLRAGGMR-EAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAKTGI 198
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAV 922
V + G V+T + + + V
Sbjct: 199 TVNAVCPGYVETPMAERVREGYARHWGVTEQEV 231
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 154 bits (393), Expect = 1e-42
Identities = 32/212 (15%), Positives = 69/212 (32%), Gaps = 12/212 (5%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+ VT + G V+ L G VV + PG+
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGT------IALA 55
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGV---MYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
E +++V L ID +V+N + M +E + M + +
Sbjct: 56 EQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQ 115
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ + + + ++ I+S+ G +P A +Y + + + + +S I +
Sbjct: 116 SAIAPLRAAGG-ASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLYA 174
Query: 894 IQAGDVKTELLSHSTDRDVVDKY--DISKAVP 923
I ++D + + + + VP
Sbjct: 175 IGPNFFNNPTYFPTSDWENNPELRERVDRDVP 206
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 155 bits (394), Expect = 1e-42
Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +KV+ VTG+S GIG + + V G+KV+ ++ + D
Sbjct: 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIH-----------DPGEAKYDHIECD 54
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + VK + + E G I +LVNNAG+ + +E + EW +I+VN+ G +
Sbjct: 55 VTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASK 114
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+P M+ SR I+NISS + Y +K+ + G++ ++ + + ++
Sbjct: 115 FAIPYMIRSRD-PSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYA-PLLRCNA 172
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAV 922
+ + T L+ + + +V +
Sbjct: 173 VCPATIDTPLVRKAAELEVGSDPMRIEKK 201
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 154 bits (392), Expect = 2e-42
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 3/189 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA K VTG++ GIG+ + L GA V+ + + + D
Sbjct: 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAA---AASIGKKARAIAAD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
++ VK + E+ A G IDILVNNA ++ F + L+ W +I+VN+ G
Sbjct: 61 ISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTR 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
M + + G +++I+SN +A Y K + G + AL E+ NI
Sbjct: 121 AGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNITANA 180
Query: 894 IQAGDVKTE 902
+ G ++++
Sbjct: 181 VTPGLIESD 189
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 155 bits (394), Expect = 2e-42
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 10/234 (4%)
Query: 699 SISNAGTVNIVFG---NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLE 754
S + GT N+ F A V VTG GIG + + L G + + +
Sbjct: 9 SGVDLGTENLYFQSMMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVA 68
Query: 755 NLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFT--LMEKY 812
+ L +I + D+ + + V V+AE G ID LVNNAG+
Sbjct: 69 PVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDL 128
Query: 813 KLEEWNAMINVNIKGVLHCIGNILPSML--HSRRPGHILNISSNAGVRPFAGLAVYTGTK 870
K E ++ ++ VN++G + +L +ML +R I+NI+S + V Y +K
Sbjct: 129 KPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSK 188
Query: 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ S L +++ I V ++ G +++++ + + + D S VP+
Sbjct: 189 AGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGK--YDGLIESGLVPM 240
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 155 bits (395), Expect = 2e-42
Identities = 57/251 (22%), Positives = 106/251 (42%), Gaps = 28/251 (11%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV------------ARRIDRLENLKTSLQ 761
+ KV F+TG++ G G L GA ++A+ D L ++
Sbjct: 26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE 85
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLEEWNAM 820
II ++DV + ++ V + + +LG +DI++ NA + T + + + W M
Sbjct: 86 ALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDM 145
Query: 821 INVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGAL 880
I+VN+ G +P ++ +R G I+ SS G+R + Y +K+ + G+ +
Sbjct: 146 IDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTM 205
Query: 881 RQEVSDRNIKVTCIQAGDVKTEL-------------LSHSTDRDVVDKYDISKAVPV--L 925
E+ RNI+V + V T + L + T D +P+ +
Sbjct: 206 ALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIPYV 265
Query: 926 TTKEISQSIIF 936
+IS +I+F
Sbjct: 266 EPADISNAILF 276
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 154 bits (391), Expect = 2e-42
Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 11/192 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KVI +T ++ GIG+ GAKV+A +L+ L+ I + LD
Sbjct: 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-----KYPGIQTRVLD 58
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + + + E+ +D+L N AG ++ + + ++W+ +N+N++ + I
Sbjct: 59 VTKKKQIDQFA----NEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIK 114
Query: 834 NILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP ML +++ G+I+N+SS A V+ VY+ TK + G++ ++ + + I+
Sbjct: 115 AFLPKML-AQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCN 173
Query: 893 CIQAGDVKTELL 904
C+ G V T L
Sbjct: 174 CVCPGTVDTPSL 185
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 154 bits (391), Expect = 3e-42
Identities = 39/244 (15%), Positives = 80/244 (32%), Gaps = 26/244 (10%)
Query: 707 NIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS 766
+V + +K I V G S +G ++VK + +++ D EN P +
Sbjct: 13 GLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISI----DFREN--------PNA 60
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNI 825
+ + E ++K V+ ++ ++ +D V AG L+ MI++N+
Sbjct: 61 DHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNL 120
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
+ + G + ++A + +G+ Y TK I L E
Sbjct: 121 YSAFASAHIGAKLL---NQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENG 177
Query: 886 D--RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943
I + T R + + P+ E+++ +
Sbjct: 178 GLPAGSTSLGILPVTLDTPTN-----RKYMSDANFDDWTPL---SEVAEKLFEWSTNSDS 229
Query: 944 SAVN 947
N
Sbjct: 230 RPTN 233
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 154 bits (391), Expect = 3e-42
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 12/200 (6%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSIIV 769
+ L KV VTG+S GIG + K L GA V + R + E +Q+ GS
Sbjct: 3 SMLKGKVALVTGASRGIGRAIAKRLANDGALVA-IHYGNRKEEAEETVYEIQSNGGSAFS 61
Query: 770 KKLDVTIENDVKKVVREVLAEL------GHIDILVNNAGVMYFTLMEKYKLEEWNAMINV 823
++ + V+ + + EL DIL+NNAG+ +E+ + ++ M++V
Sbjct: 62 IGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSV 121
Query: 824 NIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
N K I L + R I+NISS A Y+ TK I ++ L ++
Sbjct: 122 NAKAPFFIIQQALSRL---RDNSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQ 178
Query: 884 VSDRNIKVTCIQAGDVKTEL 903
+ R I V I G VKT++
Sbjct: 179 LGARGITVNAILPGFVKTDM 198
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 154 bits (391), Expect = 3e-42
Identities = 53/190 (27%), Positives = 85/190 (44%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K VTGS+ G+G + L GA+V+ R L +L D
Sbjct: 7 LTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT E ++ ++ AE H+DIL+NNAG+ Y M + +LE W +I+ N+
Sbjct: 67 VTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSR 126
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ M+ G I+NI S +A YT K I+ ++ ++ E + NI+
Sbjct: 127 SAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNA 186
Query: 894 IQAGDVKTEL 903
I G + T++
Sbjct: 187 IGPGYILTDM 196
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 155 bits (393), Expect = 4e-42
Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 1/190 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K+ VTG+S GIG + GA +V + ++ + + A + D
Sbjct: 32 LKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCD 91
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT E+ ++ +V ++ +E+G IDILVNNAG++ M + ++ +I++++
Sbjct: 92 VTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFIVSK 151
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
++PSM+ + G I+NI S ++ Y K ++ ++ + E + NI+
Sbjct: 152 AVIPSMI-KKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNG 210
Query: 894 IQAGDVKTEL 903
I G + T
Sbjct: 211 IGPGYIATPQ 220
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 153 bits (388), Expect = 5e-42
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 1/190 (0%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+L KV VTG+S GIG ++ L + GA VV A E + S++ L
Sbjct: 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVL 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+++ ++ E+ AE IDILVNNAG+ LM + +EW ++IN N+ +
Sbjct: 62 NISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMS 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ M+ +R G I++I S G G Y K + G S +L EV+ RNI V
Sbjct: 122 KECVRGMM-KKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVN 180
Query: 893 CIQAGDVKTE 902
+ G + T+
Sbjct: 181 VVAPGFIATD 190
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 153 bits (390), Expect = 8e-42
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 17/218 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV----------------ARRIDRLENLK 757
+ KV FVTG++ G G L GA ++AV A + L
Sbjct: 9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETA 68
Query: 758 TSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLEE 816
++ I+ ++DV + +K V + +LG +DI+V NAG+ ++K E+
Sbjct: 69 DLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEED 128
Query: 817 WNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876
W MI++N+ GV + +P M+ R G I+ SS G++ + Y K+ + G+
Sbjct: 129 WTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGL 188
Query: 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVD 914
A E+ I+V + VKT +L + +
Sbjct: 189 MRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFR 226
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 153 bits (388), Expect = 8e-42
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 7/189 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ K I VTG++SGIG + GA +VAV R L + I D
Sbjct: 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA---VAALEAEAIAVVAD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ V+ V E L E G + + + AGV + L LE W ++ VN+ G
Sbjct: 61 VSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVAR 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ G ++ S AG+ GLA Y K + G++ L E++ + ++V
Sbjct: 121 KAGEVL---EEGGSLVLTGSVAGL-GAFGLAHYAAGKLGVVGLARTLALELARKGVRVNV 176
Query: 894 IQAGDVKTE 902
+ G ++T
Sbjct: 177 LLPGLIQTP 185
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 153 bits (388), Expect = 1e-41
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 6/214 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA ++ VTG S GIG+ + + L+ GA+V AR + + T L +A G D
Sbjct: 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRL-SAYGDCQAIPAD 85
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
++ E +++ + + +DILVNNAG + +E Y + W ++ +N+ V CI
Sbjct: 86 LSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQ 145
Query: 834 NILPSMLHS---RRPGHILNISSNAGVRPFAGLAV-YTGTKYFIEGISGALRQEVSDRNI 889
+LP + S P ++NI S AG+ A Y +K + +S L +E+ +I
Sbjct: 146 QLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHI 205
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
V I G + + H + + S ++P
Sbjct: 206 NVNVIAPGRFPSRMTRHIANDPQALEA-DSASIP 238
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 152 bits (386), Expect = 1e-41
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 7/204 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG +SG+G ++VK L+ GAKV + L L + + D
Sbjct: 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GERSMFVRHD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ E D V+ V LG +++LVNNAG++ ME +LE+++ ++ +N + V
Sbjct: 61 VSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQ 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN--IKV 891
+ +M G I+N++S + P A Y+ +K + ++ A + I+V
Sbjct: 121 QGIAAMK--ETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRV 178
Query: 892 TCIQAGDVKTELLSHSTDRDVVDK 915
I + T ++ S + V +
Sbjct: 179 NSIHPDGIYTPMMQASLPKGVSKE 202
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 151 bits (385), Expect = 1e-41
Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 8/187 (4%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
VT G L G V + + L+ + P +L
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYP------QLKPMS 55
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
E + +++ V + G +D+LV+N F ++KY +E++ + + +
Sbjct: 56 EQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAV 115
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
M R+ GHI+ I+S P+ L+ YT + ++ AL +E+ + NI V I
Sbjct: 116 ASQMK-KRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIG 174
Query: 896 AGDVKTE 902
+ +E
Sbjct: 175 PNYLHSE 181
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 151 bits (384), Expect = 3e-41
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 7/192 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL- 772
L K VTGS++GIG+ + LV GA V+ RR + + ++ I++ +
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVV 67
Query: 773 -DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D+ E + V+ + +DIL+NN G+ E+W + VNI +
Sbjct: 68 ADLGTEQGCQDVI----EKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRL 123
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ L M+ R+ G ++ I+S A + P +A Y+ TK +S +L + + N+ V
Sbjct: 124 TRSYLKKMI-ERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVTV 182
Query: 892 TCIQAGDVKTEL 903
I G TE
Sbjct: 183 NTIMPGSTLTEG 194
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 151 bits (383), Expect = 5e-41
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 3/192 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
T ++V VTG++SGIG ++ + L G +V AR + L L+ A +
Sbjct: 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTC 78
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV +++ +V V+ G +D+LVNNAG + E W ++ N+ GV
Sbjct: 79 DVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVT 138
Query: 833 GNILPS--MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+L + ML G I+NI+S G + A Y+ +K+ + G + AL E++ I
Sbjct: 139 KQVLKAGGMLERGT-GRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGIT 197
Query: 891 VTCIQAGDVKTE 902
V + G V+T
Sbjct: 198 VNAVCPGFVETP 209
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 150 bits (382), Expect = 5e-41
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 8/206 (3%)
Query: 706 VNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG 765
+ F + NK I VTG + GIG + + GA V + R + + G
Sbjct: 4 MAPGFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG 63
Query: 766 -SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVN 824
+ DV+ + V K ++++ A+LG I L+ NAGV + E++ + +VN
Sbjct: 64 VKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVN 123
Query: 825 IKGVLHCIGNILPSMLHSRRPGHILNISSNAG-------VRPFAGLAVYTGTKYFIEGIS 877
+ GV + + L ++ G I+ SS + + Y +K +
Sbjct: 124 VFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLV 183
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTEL 903
L E + I+V + G V T+
Sbjct: 184 KGLAAEWASAGIRVNALSPGYVNTDQ 209
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 150 bits (382), Expect = 8e-41
Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 21/211 (9%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPG-SIIVK 770
+TG + IG + L G +VV + L L A S ++
Sbjct: 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLC 67
Query: 771 KLDVTIENDV----KKVVREVLAELGHIDILVNNAGVMYFTLM-----------EKYKLE 815
K D+++ + + + ++ G D+LVNNA Y T + K
Sbjct: 68 KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDA 127
Query: 816 EWNAMINVNIKGVLHCIGNILPSM----LHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871
+ + N L I R ++N+ P G VYT K+
Sbjct: 128 QVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKH 187
Query: 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902
+ G++ A E++ R+I+V + G
Sbjct: 188 ALGGLTRAAALELAPRHIRVNAVAPGLSLLP 218
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 150 bits (380), Expect = 1e-40
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 6/212 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKL 772
L + + VTG + GIG + GA V R ++ L G +I +
Sbjct: 8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQT 67
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ + + E G ID++ NAGV + E+ N + VN+ G + +
Sbjct: 68 DVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAV 127
Query: 833 GNILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
L +++ S G ++ SS G + + G + Y TK G E++ I V
Sbjct: 128 QACLDALIASGS-GRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAPHKITV 186
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I G++ TE L + + + + +++++P
Sbjct: 187 NAIMPGNIMTEGLLENGE-EYIAS--MARSIP 215
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 150 bits (380), Expect = 1e-40
Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 30/249 (12%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV------------ARRIDRLENLKTSLQ 761
L KV F+TG++ G G L GA ++AV + L ++
Sbjct: 11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVE 70
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
+ I+ ++ DV + ++ L ELG +DI+V NAG+ M + W+ +I
Sbjct: 71 DIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGI---APMS-AGDDGWHDVI 126
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF----AGLAVYTGTKYFIEGIS 877
+VN+ GV H I +P+++ G I+ ISS+AG+ G Y K+ + G+
Sbjct: 127 DVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLM 186
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKA----------VPVLTT 927
++ + I+V I V+T ++++ R+ + K + V VL
Sbjct: 187 RVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLAP 246
Query: 928 KEISQSIIF 936
++++ ++ +
Sbjct: 247 EDVANAVAW 255
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 149 bits (378), Expect = 2e-40
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 6/192 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L VTG+ SGIG ++ + GA+++ + R L+ L A + IV D
Sbjct: 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIV--AD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + E + + ILVN+AG+ + W ++ VN+ G+
Sbjct: 67 VTDAEAMTAAAAEA-EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASR 125
Query: 834 NILPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+M+ +R G I+N+ S +G V + Y +K + ++ AL E + R ++V
Sbjct: 126 AFGRAMV-ARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGVRV 184
Query: 892 TCIQAGDVKTEL 903
+ G V TE+
Sbjct: 185 NALAPGYVATEM 196
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 150 bits (381), Expect = 3e-40
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 12/205 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV------------ARRIDRLENLKTSLQ 761
L KV F+TG++ G G L GA +VA+ + L+ ++
Sbjct: 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE 103
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
II ++ DV ++ VV E LAE GHIDILV+N G+ + ++W+ ++
Sbjct: 104 EQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDIL 163
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALR 881
N+ G H +LPSM+ + G ++ +SS G+R G + Y +K+ ++G+ +L
Sbjct: 164 QTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLA 223
Query: 882 QEVSDRNIKVTCIQAGDVKTELLSH 906
EV NI+V + G V TE+ +
Sbjct: 224 NEVGRHNIRVNSVNPGAVNTEMALN 248
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 149 bits (378), Expect = 3e-40
Identities = 54/189 (28%), Positives = 100/189 (52%), Gaps = 1/189 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
NKV VTG+ GIG ++ K L + V+ ++R +++ +++ D
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGD 101
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ + ++ +V+ ++L E ++DILVNNAG+ L + K +EW ++ N+ + +
Sbjct: 102 VSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQ 161
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
I M+ + R G I+NISS G+ G A Y+ +K + G + +L +E++ RNI V
Sbjct: 162 PISKRMI-NNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNA 220
Query: 894 IQAGDVKTE 902
I G + ++
Sbjct: 221 IAPGFISSD 229
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 148 bits (376), Expect = 3e-40
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 4/189 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L + VTG++ GIGE + + GA V R D+L+ + L + V +
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG---KDVFVFSAN 81
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
++ +K++ E+ IDILVNNAG+ L + + ++W+ ++ VN+
Sbjct: 82 LSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTR 141
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
++ SM+ RR G I+NI+S GV G Y K + G S AL QE++ RNI V C
Sbjct: 142 ELIHSMM-RRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNC 200
Query: 894 IQAGDVKTE 902
I G +K+
Sbjct: 201 IAPGFIKSA 209
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 147 bits (373), Expect = 5e-40
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 2/191 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKK 771
L KV VTGS+ GIG + + L + G+ V+ +R + + + N G +
Sbjct: 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVE 63
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+++ E + K E+ + IDILVNNAG+ L + L +W ++ VN+ G
Sbjct: 64 MNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLV 123
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
N L M+ +R G I+NISS G G Y+ TK + G + +L +E++ RN+ V
Sbjct: 124 TQNSLRKMI-KQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLV 182
Query: 892 TCIQAGDVKTE 902
+ G ++T+
Sbjct: 183 NAVAPGFIETD 193
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 148 bits (376), Expect = 6e-40
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 13/203 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI------------DRLENLKTSLQ 761
K +TG + G+G L GA + R D L ++
Sbjct: 8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVE 67
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
I K+DV ++ V E LG IDI + NAG+ L+ + + +W+ +I
Sbjct: 68 KTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVI 127
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALR 881
N+ G + I + P M+ R G I+ +SS G A Y +K+ + G++
Sbjct: 128 GTNLTGTFNTIAAVAPGMI-KRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAA 186
Query: 882 QEVSDRNIKVTCIQAGDVKTELL 904
++ I V + G+++T +
Sbjct: 187 HDLVGYGITVNAVAPGNIETPMT 209
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 147 bits (374), Expect = 8e-40
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
TL +V VTG+S GIG + +L GA V+ A E + + + A
Sbjct: 24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAV 83
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
L+V V +V L E G +++LVNNAG+ L + K +EW+A+I+ N+K V
Sbjct: 84 LNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRL 143
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+L M+ R G I+NI+S G G Y K + G++ AL +E+ R I V
Sbjct: 144 SRAVLRPMM-KARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRGITV 202
Query: 892 TCIQAGDVKTE 902
C+ G + T+
Sbjct: 203 NCVAPGFIDTD 213
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 147 bits (373), Expect = 8e-40
Identities = 37/191 (19%), Positives = 82/191 (42%), Gaps = 4/191 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ--NAPGSIIVKK 771
+ K+ VT SSG+G +L GA+++ +R ++LE + + + + +
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D+ D+ ++ + +LG DILV + G + +E+W+ + + +
Sbjct: 65 GDIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWV 123
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
M+ + G ++ I S +RP+ LA+ + + G+ L E++ + V
Sbjct: 124 GRRAAEQMV-EKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTV 182
Query: 892 TCIQAGDVKTE 902
+ + T+
Sbjct: 183 NAVLPSLILTD 193
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 146 bits (371), Expect = 1e-39
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 10/218 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +V VTG+S GIG + L GA V R +D L + Q+ G + D
Sbjct: 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCD 62
Query: 774 VTIENDVKKVVREVLAE-LGHIDILVNNAGVM-------YFTLMEKYKLEEWNAMINVNI 825
+ E++V+ + +V E G +D+LVNNA + W+ + NV +
Sbjct: 63 SSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGL 122
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
+G C M+ + + G I+ ISS ++ Y K + ++ E+
Sbjct: 123 RGHYFCSVYGARLMVPAGQ-GLIVVISSPGSLQY-MFNVPYGVGKAACDKLAADCAHELR 180
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+ + G V+TELL ++ V + + K
Sbjct: 181 RHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFK 218
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 147 bits (374), Expect = 1e-39
Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 6/212 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKL 772
L+ + + VTG + GIG + GA V AR L ++ L G++I +L
Sbjct: 39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRL 98
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ R V+ G +D++ NAG+ ++ E+ + +++VN+KG ++ +
Sbjct: 99 DVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTV 158
Query: 833 GNILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
L + + G ++ SS G V + G + Y +K G E++ R + V
Sbjct: 159 QACLAPLT-ASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTV 217
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I G++ TE L + + + +++++P
Sbjct: 218 NAILPGNILTEGLVDMGE-EYISG--MARSIP 246
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 146 bits (370), Expect = 2e-39
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 3/192 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
L +V VTG S G+G + + L G VV +R ++ L G + +
Sbjct: 19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 78
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ +VKK++ V + G +D +VN AG+ E++ L+E+ +I VN+ G +
Sbjct: 79 DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVC 138
Query: 833 GNILPSMLHSRRPGHILNISS-NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ I+NI S ++ Y +K + ++ AL +E I+V
Sbjct: 139 REAFSLLR-ESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRV 197
Query: 892 TCIQAGDVKTEL 903
I G +T++
Sbjct: 198 NVIAPGWYRTKM 209
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 145 bits (368), Expect = 3e-39
Identities = 31/197 (15%), Positives = 73/197 (37%), Gaps = 22/197 (11%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-------AVARRIDRLENLKTSLQNAPG 765
TL++ I +TG+S +G L+ G +V+ A + G
Sbjct: 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTEL-----------RQAG 72
Query: 766 SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNI 825
++ + D + E + + + + + +V+NA + + + + M +V++
Sbjct: 73 AVALY-GDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGE-EADNFTRMFSVHM 130
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
+ P + S I++IS + + + Y TK +E ++ + +
Sbjct: 131 LAPYLINLHCEPLLTASEV-ADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFA 189
Query: 886 DRNIKVTCIQAGDVKTE 902
+KV I + +
Sbjct: 190 PL-VKVNGIAPALLMFQ 205
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 146 bits (370), Expect = 4e-39
Identities = 36/205 (17%), Positives = 74/205 (36%), Gaps = 21/205 (10%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNA-PGSII 768
G+ + VTG++ IG + L G +VV + +L L + +
Sbjct: 18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAV 77
Query: 769 VKKLDVT----IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLE--------- 815
V + D+T + ++++ G D+LVNNA Y T + + E
Sbjct: 78 VCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVE 137
Query: 816 -EWNAMINVNIKGVLHCIGNILPSMLHSR-----RPGHILNISSNAGVRPFAGLAVYTGT 869
+ +I N + + I+N+ +P ++Y
Sbjct: 138 TQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMG 197
Query: 870 KYFIEGISGALRQEVSDRNIKVTCI 894
K+ + G++ + E++ I+V +
Sbjct: 198 KHALVGLTQSAALELAPYGIRVNGV 222
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 145 bits (369), Expect = 4e-39
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 3/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA + VTG+ SGIG + GA V+A R D ++ + + + GS D
Sbjct: 29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAEAVVAD 87
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ V E+ A +D+LVNNAG++ E+ L W ++ VN+
Sbjct: 88 LADLEGAANVAEEL-AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSR 146
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ +ML + G I+ I+S + +A Y +K+ + G++ AL E + R + V
Sbjct: 147 SFGTAML-AHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNA 205
Query: 894 IQAGDVKTEL 903
+ G V T
Sbjct: 206 LAPGYVVTAN 215
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 145 bits (368), Expect = 4e-39
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 6/195 (3%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKK 771
+ +T + G+G+Q+ + L+ G V +E +K + ++ + +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQ 63
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGVL 829
DVT + D+ K+V E ++ G ID L+NNAG F + Y+ +EWN MI N+ V
Sbjct: 64 ADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVF 123
Query: 830 HCIGNILPSMLHSRRPGHILNIS--SNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
H + ++P M + G I+N + + + K + ++ + E ++
Sbjct: 124 HLLKLVVPVMR-KQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAEY 182
Query: 888 NIKVTCIQAGDVKTE 902
I + GD+ E
Sbjct: 183 GITANMVCPGDIIGE 197
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 145 bits (368), Expect = 5e-39
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 8/217 (3%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIV 769
G+ A +V FVTG G+G + + L G V + R D + ++A
Sbjct: 20 GSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKA 79
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
+DV ++ +VLA+ G +D+L+NNAG+ K +W+A++ ++ +
Sbjct: 80 YAVDVADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMF 139
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ + M+ RR G I+NI S G R G A Y K I G + L E + R I
Sbjct: 140 NVTKQFIAGMV-ERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKRGI 198
Query: 890 KVTCIQAGDVKTELLSHSTD--RDVVDKYDISKAVPV 924
V + G + T + + V + I +PV
Sbjct: 199 TVNTVSPGYLATAM----VEAVPQDVLEAKILPQIPV 231
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 143 bits (363), Expect = 1e-38
Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 2/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKL 772
K VTG+S GIG + L G V V A ++ E + ++ +
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQA 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+V ++VK +++EV+++ G +D+LVNNAG+ L+ + K +EW+ +I+ N+KGV +CI
Sbjct: 62 NVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCI 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P ML +R G I+N+SS G G A Y TK + G++ + +E++ R I V
Sbjct: 122 QKATPQML-RQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVN 180
Query: 893 CIQAGDVKTE 902
+ G + ++
Sbjct: 181 AVAPGFIVSD 190
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 143 bits (363), Expect = 2e-38
Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 8/199 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-------P 764
N L + + VTG+ SGIG + L GA V A + L
Sbjct: 3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPR 62
Query: 765 GSIIVKKLDVTIENDVKKVVREVLAELGHI-DILVNNAGVMYFTLMEKYKLEEWNAMINV 823
G+ + DV+ + ++ +V A ++V+ AG+ + ++W+ +I V
Sbjct: 63 GNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAV 122
Query: 824 NIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
N+KG +++ + G I+NISS G G Y +K + G++ +E
Sbjct: 123 NLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARE 182
Query: 884 VSDRNIKVTCIQAGDVKTE 902
+ I+ + G + T
Sbjct: 183 LGRHGIRCNSVLPGFIATP 201
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 142 bits (362), Expect = 2e-38
Identities = 67/190 (35%), Positives = 97/190 (51%), Gaps = 2/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-AVARRIDRLENLKTSLQNAPGSIIVKKL 772
L KV VTG+S GIG + DL GA VV A + + ++ I +
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRA 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV DV +V++ + G +DILVNNAGV L+ + K EEW+ +IN N+KGV C
Sbjct: 62 DVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCT 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ M+ +R G I+NI+S GV G A Y K + G++ +E++ RNI V
Sbjct: 122 KAVSRFMM-RQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVN 180
Query: 893 CIQAGDVKTE 902
I G + T+
Sbjct: 181 AIAPGFIATD 190
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 142 bits (361), Expect = 2e-38
Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 4/189 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG+S GIG+ + + L GAKV+ A + + L + L+
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG---DNGKGMALN 63
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT ++ V++ + E G +DILVNNAG+ L+ + K EEW+ ++ N+ +
Sbjct: 64 VTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSK 123
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+L M+ +R G I+N+ S G AG A Y K + G + ++ +EV+ R + V
Sbjct: 124 AVLRGMM-KKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNT 182
Query: 894 IQAGDVKTE 902
+ G ++T+
Sbjct: 183 VAPGFIETD 191
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 142 bits (361), Expect = 2e-38
Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 2/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKL 772
L K VTGSS G+G+ + L +GA +V + L+ + A +++V K
Sbjct: 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKG 62
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV DV+ +V+ + G IDILVNNAG+ TLM K ++W+ ++N N+K C
Sbjct: 63 DVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCT 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ ML ++ G I+NI+S AG+ AG A Y +K + G + ++ +E + + I
Sbjct: 123 KAVSKIML-KQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCN 181
Query: 893 CIQAGDVKTE 902
+ G +KT+
Sbjct: 182 AVAPGIIKTD 191
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 143 bits (364), Expect = 3e-38
Identities = 43/214 (20%), Positives = 84/214 (39%), Gaps = 28/214 (13%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV------------ARRIDRLENLKTSLQ 761
+ +KV+ VTG + G G L GA ++ LE ++
Sbjct: 8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE 67
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
++DV V + + +AE G +D++V NAG+ L ++ +
Sbjct: 68 KTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGIC--PLGAHLPVQAFADAF 125
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-----------PFAGLAVYTGTK 870
+V+ GV++ + LP + I+ S AG+ G A Y+ K
Sbjct: 126 DVDFVGVINTVHAALPYLTSG---ASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAK 182
Query: 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELL 904
++ + L +++ ++I+ I +V T++L
Sbjct: 183 QLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDML 216
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 143 bits (362), Expect = 4e-38
Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 6/194 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTGSS GIG + + GA V E + + K +
Sbjct: 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCN 91
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGV--MYFTLMEKYKLEEWNAMINVNIKGVLHC 831
++ V++ + + + G ID+ V NAGV ++ + WN +I+V++ GV +C
Sbjct: 92 ISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYC 151
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGL--AVYTGTKYFIEGISGALRQEVSDRNI 889
NI G ++ SS +G A Y K ++ +L E +
Sbjct: 152 SHNIGKIFK-KNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAPF-A 209
Query: 890 KVTCIQAGDVKTEL 903
+V I G + T++
Sbjct: 210 RVNTISPGYIDTDI 223
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 141 bits (358), Expect = 5e-38
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 12/190 (6%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+ VTG S GIG + + LV G +V +R + + G++ + D+
Sbjct: 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQ-------SLGAVPLP-TDLE 53
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ D K +V+ L LG + +LV+ A V + EEW ++ +++
Sbjct: 54 KD-DPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAA 112
Query: 836 LPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
P M G +L I S + YT K + G++ AL +E + I+V
Sbjct: 113 APHMA-EAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNL 171
Query: 894 IQAGDVKTEL 903
+ G V+TE
Sbjct: 172 LCPGYVETEF 181
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 141 bits (359), Expect = 5e-38
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 5/213 (2%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVA-VARRIDRLENLKTSLQNAPGSIIVKK 771
++ ++ +VTG GIG + + L G +VVA R + +
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASE 69
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+V + K+ +V AE+G ID+LVNNAG+ + K E+W A+I+ N+ + +
Sbjct: 70 GNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNV 129
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
++ M+ R G I+NISS G + G Y+ K I G + +L QEV+ + + V
Sbjct: 130 TKQVIDGMV-ERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTV 188
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ G + T+++ DV++K I +PV
Sbjct: 189 NTVSPGYIGTDMVKAIRP-DVLEK--IVATIPV 218
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 142 bits (360), Expect = 6e-38
Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 2/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKL 772
L +++ VTG+S GIG + +L GAKV V A + + ++ A G K
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKA 85
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ E++V+ + V+ G +D+LVNNAG+ TL+ + K ++W +++++N+ GV C
Sbjct: 86 DVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCS 145
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
ML +R G I+NI+S G G A Y+ K + G++ + +E++ R I V
Sbjct: 146 RAAAKIML-KQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVN 204
Query: 893 CIQAGDVKTE 902
+ G + T+
Sbjct: 205 AVAPGFIATD 214
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 140 bits (356), Expect = 1e-37
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +K + V +S GIG + L GA+V AR + L+
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVC---------- 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
D++K + + ++ +DILV NAG ++ E++ I+ ++ +
Sbjct: 67 -----DLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVR 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
N LP+M + G I+ I+S + + P L + + G L EV+ I V C
Sbjct: 122 NYLPAMK-EKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNC 180
Query: 894 IQAGDVKTE 902
+ G +TE
Sbjct: 181 VAPGWTETE 189
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 139 bits (354), Expect = 2e-37
Identities = 52/189 (27%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TG+SSGIG + + L LG+KV+ ++L++L +L + ++ +
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL---KDNYTIEVCN 68
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ + + ++ ++ ++DILV NAG+ TL + K ++++ +I++N+K
Sbjct: 69 LANKEECSNLI----SKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNR 124
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ M+ +R G I+NISS G+ G A Y +K + G++ +L EV+ R I V
Sbjct: 125 EAIKKMI-QKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNA 183
Query: 894 IQAGDVKTE 902
+ G +K++
Sbjct: 184 VAPGFIKSD 192
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 139 bits (353), Expect = 2e-37
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
V+ VTG+S GIG+ + L G KV V AR E + ++ G I DV+
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVS 61
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
E DV+ +++ + G ID++VNNAG+ TL+ + K +W+ +I++N+ GV C
Sbjct: 62 KEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAA 121
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
M+ +R G I+NI+S G+ G A Y K + G S +E + RNI V +
Sbjct: 122 TKIMM-KKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVC 180
Query: 896 AGDVKTE 902
G + ++
Sbjct: 181 PGFIASD 187
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 139 bits (352), Expect = 1e-36
Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 38/221 (17%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-----------AVARRIDRLENLK--- 757
V VTG++ +G + + L G V A++ ++
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 758 -----TSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKY 812
+++ AP S VT+ ++V G D+LVNNA Y T + +
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124
Query: 813 KLEEWNAM--------------INVNIKGVLHCIGNILPSMLHS-----RRPGHILNISS 853
+ N I + + I+N+
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 184
Query: 854 NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+P G +YT K +EG++ + E++ I+V +
Sbjct: 185 AMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGV 225
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 137 bits (347), Expect = 2e-36
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
++ + VTG + GIG + + L G KV R AP + ++
Sbjct: 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG-----------SGAPKGLFGVEV 60
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT + V + V G +++LV+NAG+ + + E++ +IN N+ G
Sbjct: 61 DVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVA 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
SM + G ++ I S +G+ A Y +K + G++ ++ +E+S N+
Sbjct: 121 QRASRSMQ-RNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANVTAN 179
Query: 893 CIQAGDVKTE 902
+ G + T+
Sbjct: 180 VVAPGYIDTD 189
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 136 bits (346), Expect = 2e-36
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 3/188 (1%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVV-AVARRIDRLENLKTSLQNAPGS-IIVKKLDV 774
+ +TG+S GIG + L G + + ++ E + + + V ++
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANL 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
+V + LG +D LVNNAG+ TL+ + K E+W A++ N+ V
Sbjct: 62 LEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTRE 121
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+ M+ R G I+NI+S G+ G A Y +K + G + A+ +E + R I V +
Sbjct: 122 AVKLMM-KARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAV 180
Query: 895 QAGDVKTE 902
G ++TE
Sbjct: 181 APGFIETE 188
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 139 bits (352), Expect = 3e-36
Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 38/221 (17%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-----------AVARRIDRLENLK--- 757
V VTG++ +G + + L G V A++ ++
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 758 -----TSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKY 812
+++ AP S VT+ ++V G D+LVNNA Y T + +
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161
Query: 813 KLEEWNAM--------------INVNIKGVLHCIGNILPSMLHS-----RRPGHILNISS 853
+ N I + + I+N+
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 221
Query: 854 NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+P G +YT K +EG++ + E++ I+V +
Sbjct: 222 AMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGV 262
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 136 bits (345), Expect = 3e-36
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 7/189 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +K + +TG++ GIG ++ GA++VA L ++ +D
Sbjct: 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG-----AHPVVMD 57
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V V++ E LA LG +D +V+ AG+ K LE+W ++ VN+ G
Sbjct: 58 VADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAK 117
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+M + PG I+ +S + G A Y + + G++ L E+ I+V
Sbjct: 118 AASEAMR-EKNPGSIVLTASRVYL-GNLGQANYAASMAGVVGLTRTLALELGRWGIRVNT 175
Query: 894 IQAGDVKTE 902
+ G ++T
Sbjct: 176 LAPGFIETR 184
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 136 bits (346), Expect = 4e-36
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 8/196 (4%)
Query: 714 LANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPG-SIIV 769
L KV+ VTG+S G+G + + +GA V A R E L+ G
Sbjct: 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKA 77
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
K V +K+V++V+A+ G ID + NAG + + +E WN ++ V++ G
Sbjct: 78 YKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTF 137
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVR--PFAGLAVYTGTKYFIEGISGALRQEVSDR 887
HC + R G ++ +S +G Y K ++ +L E D
Sbjct: 138 HCAKAVGHHFK-ERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDF 196
Query: 888 NIKVTCIQAGDVKTEL 903
+V I G + T L
Sbjct: 197 -ARVNSISPGYIDTGL 211
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 135 bits (343), Expect = 7e-36
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 12/190 (6%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ ++ + VTG + GIG + + G KV R P + K
Sbjct: 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRS-----------GEPPEGFLAVKC 66
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D+T V++ +E+ G +++L+ NAGV L+ + E++ +++ N+ G +
Sbjct: 67 DITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVV 126
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ML + G ++ ISS G+ AG A Y +K + G + +L +E+ RNI
Sbjct: 127 KRANRAML-RAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRNITFN 185
Query: 893 CIQAGDVKTE 902
+ G V T+
Sbjct: 186 VVAPGFVDTD 195
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 132 bits (334), Expect = 8e-35
Identities = 36/243 (14%), Positives = 77/243 (31%), Gaps = 25/243 (10%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK-KL 772
+ + V G +G + V+ V ++ D +EN + A S+IVK
Sbjct: 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASI----DVVEN-----EEASASVIVKMTD 55
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHC 831
T + D L +D ++ AG K + + M +I
Sbjct: 56 SFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTIS 115
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD--RNI 889
+ + G + + A + G+ Y K + + +L + S
Sbjct: 116 SHLATKHL---KEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGA 172
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949
+ + T + R + + D S P+ + + ++ + + +
Sbjct: 173 AAIAVLPVTLDTPMN-----RKSMPEADFSSWTPL---EFLVETFHD-WITGNKRPNSGS 223
Query: 950 LIE 952
LI+
Sbjct: 224 LIQ 226
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 130 bits (329), Expect = 3e-34
Identities = 36/243 (14%), Positives = 83/243 (34%), Gaps = 26/243 (10%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+++ + V G +G +++ G V+ + D N A +I+V +
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNI----DLSAN-----DQADSNILVD-GN 50
Query: 774 VTIENDVKKVVREVLAEL--GHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLH 830
+ ++ + + L +D + AG + K ++ + MI ++
Sbjct: 51 KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 110
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD--RN 888
+ + G + + A + P + Y K + ++ +L + S N
Sbjct: 111 AAKLATTHL---KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDN 167
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948
V I + T + R + D S P+ IS+ ++ + S +
Sbjct: 168 SAVLTIMPVTLDTPMN-----RKWMPNADHSSWTPL---SFISEHLLKWTTETSSRPSSG 219
Query: 949 ILI 951
L+
Sbjct: 220 ALL 222
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 128 bits (325), Expect = 5e-33
Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV------------AVARRIDRLENLKTSLQ 761
L ++ VTG SGIG GA V V I +
Sbjct: 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALI----------E 96
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAM 820
++ D++ E+ + +V + LG +DIL AG ++ E++
Sbjct: 97 ECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQT 156
Query: 821 INVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGAL 880
VN+ + +P + + I+ SS +P L Y TK I S L
Sbjct: 157 FAVNVFALFWITQEAIPLL---PKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGL 213
Query: 881 RQEVSDRNIKVTCIQAGDVKTEL 903
++V+++ I+V + G + T L
Sbjct: 214 AKQVAEKGIRVNIVAPGPIWTAL 236
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 125 bits (315), Expect = 4e-32
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 15/219 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L ++V VTG+SSG+G + + L GA V+ + + E L ++ + D
Sbjct: 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL---GAAVRFRNAD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLM----EKYKLEEWNAMINVNIKGVL 829
VT E D + E GH+ LVN AG + + L+ + + VN+ G
Sbjct: 62 VTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF 121
Query: 830 HCIGNILPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV 884
+ I M G I+N +S A G A Y +K + ++ +E+
Sbjct: 122 NMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAAREL 181
Query: 885 SDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+ I+V I G T +++ DV D ++ +VP
Sbjct: 182 ARFGIRVVTIAPGIFDTPMMAGMPQ-DVQDA--LAASVP 217
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 122 bits (309), Expect = 5e-32
Identities = 27/187 (14%), Positives = 66/187 (35%), Gaps = 26/187 (13%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
I + G+S +G + + L A+V+ R + +D+T
Sbjct: 4 MKILLIGASGTLGSAVKERLEK-KAEVITAGRHSGDV-----------------TVDITN 45
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ +KK+ ++G +D +V+ G F+ + + E+ I+ + G ++ + +
Sbjct: 46 IDSIKKMY----EQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGI 101
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
S+ G + P A + + + E+ R I++ +
Sbjct: 102 DSL---NDKGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMP-RGIRINTVSP 157
Query: 897 GDVKTEL 903
++
Sbjct: 158 NVLEESW 164
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 129 bits (326), Expect = 6e-32
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG++ GIG + + GA VVA+ E+LK G+ + LD
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVD-GAAEDLKRVADKVGGTALT--LD 267
Query: 774 VTIENDVKKVVREVLAELG-HIDILVNNAGVMYFT---LMEKYKLEEWNAMINVNIKGVL 829
VT ++ V K+ V G +DILVNNAG+ T L+ + W+A+I VN+
Sbjct: 268 VTADDAVDKITAHVTEHHGGKVDILVNNAGI---TRDKLLANMDEKRWDAVIAVNLLAPQ 324
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
++ + G ++ +SS AG+ G Y TK + G++ AL ++D+ I
Sbjct: 325 RLTEGLVGNGT-IGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKGI 383
Query: 890 KVTCI 894
+ +
Sbjct: 384 TINAV 388
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 124 bits (314), Expect = 9e-32
Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 16/220 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
V+G + G+GE V+ L G VV ++ + L L +
Sbjct: 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL---GNRAEFVSTN 84
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLM-----EKYKLEEWNAMINVNIKGV 828
VT E+ V + +V + G + + + I++ + G
Sbjct: 85 VTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGT 144
Query: 829 LHCIGNILPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
+ + S+ + G ++ +S AG G Y K + G++ A ++
Sbjct: 145 YNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAARD 204
Query: 884 VSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+S I+V I G +KT ++ + + + K + +P
Sbjct: 205 LSSAGIRVNTIAPGTMKTPIMESVGE-EALAK--FAANIP 241
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 124 bits (313), Expect = 9e-32
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 17/221 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ V +TG +SG+G + LV GA V + E L + + D
Sbjct: 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL---GNNCVFAPAD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYK------LEEWNAMINVNIKG 827
VT E DV+ + + G +D+ VN AG+ + K LE++ +++VN+ G
Sbjct: 67 VTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMG 126
Query: 828 VLHCIGNILPSM-----LHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
+ I + M + G I+N +S A G A Y+ +K I G++ + +
Sbjct: 127 TFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIAR 186
Query: 883 EVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+++ I+V I G T LL+ + V + ++ VP
Sbjct: 187 DLAPIGIRVMTIAPGLFGTPLLTSLPE-KVCNF--LASQVP 224
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 123 bits (311), Expect = 1e-31
Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 6/212 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI--IVKKLDV 774
VI +TGS+SGIG L + L G V+ + R +E ++ ++ ++ +
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGG 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFT--LMEKYKLEEWNAMINVNIKGVLHCI 832
++ V V A + + VN GV L E + A + V
Sbjct: 62 VLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPG 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP + + G A + LA Y G+KY + ++ + + R +++
Sbjct: 122 AAELPMVE-AMLAGDEARAIELAEQQGQTHLA-YAGSKYAVTCLARRNVVDWAGRGVRLN 179
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ G V+T LL S + P+
Sbjct: 180 VVAPGAVETPLLQASKADPRYGESTRRFVAPL 211
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 119 bits (301), Expect = 7e-30
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 17/211 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-------ARRIDRLENLKTSLQNAPGS 766
L K + +TG SGIG + GA + A + ++
Sbjct: 45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQY------VEKEGVK 98
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNI 825
++ D++ E K +V+E + +LG ++ILVNN +E E+ +NI
Sbjct: 99 CVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINI 158
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
H L + ++ I+N +S L Y+ TK I + +L Q +
Sbjct: 159 FSYFHVTKAALSHL---KQGDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLV 215
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKY 916
+ I+V + G + T L+ S D V ++
Sbjct: 216 QKGIRVNGVAPGPIWTPLIPSSFDEKKVSQF 246
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 115 bits (291), Expect = 4e-29
Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 25/217 (11%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+ VTG +SG+G L G +VV +D L+ +I + DVT
Sbjct: 2 ERSALVTGGASGLGRAAALALKARGYRVVV----LD--------LRREGEDLIYVEGDVT 49
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLM----EKYKLEEWNAMINVNIKGVLHC 831
E DV++ V E + +V+ AGV + + LE + ++ VN+ G +
Sbjct: 50 REEDVRRAVARA-QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNV 108
Query: 832 IGNILPSMLHSR-----RPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
+ +M + + G I+N +S A G A Y +K + ++ +E++
Sbjct: 109 LRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAG 168
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I+V + G T LL + ++ VP
Sbjct: 169 WGIRVVTVAPGLFDTPLLQGLPE-KAKAS--LAAQVP 202
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 113 bits (286), Expect = 3e-28
Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 21/221 (9%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ + V VTG +SG+G K L+ GA+VV +D + + + D
Sbjct: 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVV----LDI--RGEDVVADLGDRARFAAAD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLM----EKYKLEEWNAMINVNIKGVL 829
VT E V + ++ +G + I+VN AG + + L + ++++N+ G
Sbjct: 61 VTDEAAVASAL-DLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSF 119
Query: 830 HCIGNILPSML-------HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
+ + + ++ G I+N +S A G A Y+ +K + G++ + +
Sbjct: 120 NVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIAR 179
Query: 883 EVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+++ I+V I G T LL+ + + + K VP
Sbjct: 180 DLASHRIRVMTIAPGLFDTPLLASLPE-EARAS--LGKQVP 217
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 113 bits (284), Expect = 5e-28
Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 54/237 (22%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+I ++G ++GIG K L G ++V + R + D++
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI-----------------ADLST 44
Query: 777 ENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
K+ + +VLA+ +D LV AG+ T + +++VN G +
Sbjct: 45 AEGRKQAIADVLAKCSKGMDGLVLCAGLGPQT-------KVLGNVVSVNYFGATELMDAF 97
Query: 836 LPSMLHSRRPGHILNISSNAGVR----------------------------PFAGLAVYT 867
LP++ + + ISS A G Y
Sbjct: 98 LPALKKGHQ-PAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYA 156
Query: 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
G+K + + +++ I G +T LL + P+
Sbjct: 157 GSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPM 213
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 110 bits (277), Expect = 6e-27
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 4/177 (2%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTL-GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
V VTG + GIG +V+DL L VV AR + R + LQ S +LD
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ ++ + + E G +D+LVNNAG+ + + + N G
Sbjct: 63 IDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCT 122
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+LP + + G ++N+SS VR + K+ E I+ + ++ ++
Sbjct: 123 ELLPLI---KPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVE 176
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 115 bits (291), Expect = 1e-26
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 1/123 (0%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
D A + F A P + A+ S+ ++QL + + + YL+ G +
Sbjct: 22 DLYAHPTVVARFSEMAALHPHREAIR-DRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCL 80
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
GV E E +AI +G YL ++ P A + +++
Sbjct: 81 GVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG 140
Query: 128 TSV 130
Sbjct: 141 LPC 143
Score = 78.3 bits (194), Expect = 6e-15
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 176 LKSSGKLNKEELPKLDSIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGHS 235
L + GKL++ L + ++ Q+ A++W ++L D++FF GG+S
Sbjct: 496 LTAHGKLDRAALLRRLEEPLERCASALDPDQRGCAQLWSELLGCEVGAADQDFFLCGGNS 555
Query: 236 LTAALCISKMNEE-LSLNLSIKDLFAHPTVQEMAALLE 272
L A ++ NL + DL A+ + + + LL
Sbjct: 556 LLALQLVALCQSAGAGANLGLADLQANSRLDQFSRLLR 593
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 111 bits (280), Expect = 1e-25
Identities = 29/131 (22%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+Y + +H +F Q + P+ +A+V + +T+ +L+ + + I +G + V
Sbjct: 34 EYPRDKTIHQLFEEQVSKRPNNVAIV-CENEQLTYHELNVKANQLARIFIEKGIGKDTLV 92
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
G++ME+ ++ I +A+ KAGG Y+P++ YP ++ +LDD++ +++T+ + +
Sbjct: 93 GIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN 152
Query: 128 TSVPKVKLEND 138
+
Sbjct: 153 IQFNGQVEIFE 163
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 107 bits (269), Expect = 1e-25
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 15/198 (7%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV----------AVARRIDRLENLKTSLQ 761
+ +V+ VTG+ GIG GA+VV + A +++ +
Sbjct: 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT 82
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
A G + +V + +++ + G +D+LVNNAG++ ++ EE++A+I
Sbjct: 83 AAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVI 142
Query: 822 NVNIKGVLHCIGNILPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876
V++KG + + + G I+N SS AG++ G Y+ K I +
Sbjct: 143 AVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATL 202
Query: 877 SGALRQEVSDRNIKVTCI 894
+ E+ + V I
Sbjct: 203 TLVGAAEMGRYGVTVNAI 220
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 111 bits (279), Expect = 2e-25
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 10/140 (7%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHD---------GRSITFKQLDEWTDIVGTYLIN 58
Y + + AK P+ AV T+K+L+E + V +I+
Sbjct: 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH 74
Query: 59 QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118
+ G + V ++R L + I K+G Y+P+E P +L D++ ++
Sbjct: 75 AS-LHGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVC 133
Query: 119 GEYMDRLERTSVPKVKLEND 138
D +E KV +
Sbjct: 134 DNNFDGVELPPETKVLDTKN 153
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 112 bits (283), Expect = 2e-25
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Query: 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
L Y F+ PD A+ + G+++++++LDE + + L G GS V +
Sbjct: 463 TKPLTYWFKEAVNANPDAPALT-YSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYT 521
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP 131
+R LE I + + KAG YLP++ P + +L D+ + ++T E ++
Sbjct: 522 KRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYT 581
Query: 132 KVKLEND 138
L D
Sbjct: 582 GTTLFID 588
Score = 87.3 bits (217), Expect = 2e-17
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 19/119 (15%)
Query: 176 LKSSGKLNKEELPKLDSIA----------QIELDESMFQSQKNIAKIWCKILNLYTLDKD 225
L ++GK+NK LPK D ++E + IA+IW ++L +
Sbjct: 943 LTTNGKVNKRLLPKPDQDQLAEEWIGPRNEME---------ETIAQIWSEVLGRKQIGIH 993
Query: 226 ENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNETLKLDLI 284
++FF +GGH+L A S++ +EL ++L +K LF PT+ ++A L+N ++ L+ I
Sbjct: 994 DDFFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGSDGLQDVTI 1052
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 104 bits (262), Expect = 5e-25
Identities = 40/206 (19%), Positives = 83/206 (40%), Gaps = 20/206 (9%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTL---GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
I +TG + G+G LVK L+ L + R ++ + L+ L +I + ++D
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DLAKNHSNIHILEID 80
Query: 774 VTIENDVKKVVREVLAELG--HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLH 830
+ + K+V ++ +++L NNAG+ + + +E + N +
Sbjct: 81 LRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIM 140
Query: 831 CIGNILPSMLHSRRP----------GHILNISSNAG---VRPFAGLAVYTGTKYFIEGIS 877
LP + + + I+N+SS G G+ Y +K + +
Sbjct: 141 LAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAAT 200
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTEL 903
+L ++ + I + G VKT++
Sbjct: 201 KSLSVDLYPQRIMCVSLHPGWVKTDM 226
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 109 bits (274), Expect = 1e-24
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 33/200 (16%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-------------------AVARRIDRLE 754
+KV+ +TG+ G+G+ + LGAKVV V I
Sbjct: 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEI---- 61
Query: 755 NLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKL 814
G + +V D K+V + G + +++NNAG++ M+K
Sbjct: 62 ------VKNGGVAVADYNNVL---DGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTE 112
Query: 815 EEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874
+++ +I+V++ G P ++ G I+N SS AG+ G A Y K +
Sbjct: 113 KDYKLVIDVHLNGAFAVTKAAWPYFQ-KQKYGRIVNTSSPAGLYGNFGQANYASAKSALL 171
Query: 875 GISGALRQEVSDRNIKVTCI 894
G + L +E + NIK I
Sbjct: 172 GFAETLAKEGAKYNIKANAI 191
Score = 109 bits (273), Expect = 1e-24
Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 23/272 (8%)
Query: 668 LDNLRNSNLLPNVPLENNNSTEYTDTNKQGISISNAGTVNIVFGNTLANKVIFVTGSSSG 727
+ + +S + + T A + +L +KV+ +TG+ +G
Sbjct: 274 ILDYDDSRKPEYLKNQYPFMLNDYATLTNEARKLPANDASGAPTVSLKDKVVLITGAGAG 333
Query: 728 IGEQLVKDLVTLGAKVV--------AVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEND 779
+G++ K GAKVV I + A G + DV D
Sbjct: 334 LGKEYAKWFAKYGAKVVVNDFKDATKTVDEI----------KAAGGEAWPDQHDVA--KD 381
Query: 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSM 839
+ +++ V+ + G IDILVNNAG++ K +EW+++ V++ G + P
Sbjct: 382 SEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYF 441
Query: 840 LHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI--QAG 897
+ ++ G I+NI+S +G+ G A Y+ +K I G+S + E + NIKV + A
Sbjct: 442 V-EKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHAE 500
Query: 898 DVKTELLSHSTDRDVVDKYDISKAVPVLTTKE 929
T + D+++ ++ + L T +
Sbjct: 501 TAMTLSIMREQDKNLYHADQVAPLLVYLGTDD 532
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 107 bits (271), Expect = 1e-24
Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 6/136 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVG---STVGVLM 71
L + + A+ P A G+S+T+++L E +D + + G S + V
Sbjct: 3 LLHAIQTHAETYPQTDAFR-SQGQSLTYQELWEQSDRAAAAIQKRI--SGEKKSPILVYG 59
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP 131
+S++ KAG Y+P++ S P + +++ + ++I +
Sbjct: 60 HMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQ 119
Query: 132 KVKLENDFLSKMISEN 147
V E ++ S +
Sbjct: 120 TVSAEELLENEGGSVS 135
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 104 bits (261), Expect = 2e-24
Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 33/200 (16%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-------------------AVARRIDRLE 754
+V+ VTG+ G+G GA VV V I
Sbjct: 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEI---- 62
Query: 755 NLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKL 814
+ G + V +K+V+ L G ID++VNNAG++ +
Sbjct: 63 ------RRRGGKAVANYDSVE---AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISD 113
Query: 815 EEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874
E+W+ + V+++G M + G I+ +S +G+ G A Y+ K +
Sbjct: 114 EDWDIIQRVHLRGSFQVTRAAWDHMK-KQNYGRIIMTASASGIYGNFGQANYSAAKLGLL 172
Query: 875 GISGALRQEVSDRNIKVTCI 894
G++ L E NI I
Sbjct: 173 GLANTLVIEGRKNNIHCNTI 192
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 102 bits (255), Expect = 3e-24
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 31/223 (13%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ + VTG++ GIG LV+ LV ++A AR +++ LK+ + V L
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---KDSRVHVLPL 58
Query: 773 DVTIENDVKKVVREVLAELG--HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVL 829
VT + + V +V +G + +L+NNAGV+ + + ++VN V+
Sbjct: 59 TVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVV 118
Query: 830 HCIGNILPSMLHSRRP----------GHILNISSNAG--VRPFAGLAVYTGTKYFIEGIS 877
+LP + ++ ++ ISS G +G A + Y +S
Sbjct: 119 LLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAY---RMS 175
Query: 878 GA--------LRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV 912
A L ++ D N+ V G V+T L + V
Sbjct: 176 KAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTV 218
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 104 bits (263), Expect = 1e-23
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVG--STVGVLME 72
+ A+ D G T+ QL +D + ++ + + S V V
Sbjct: 6 MIDSIEQFAQTQADFPVYD-CLGERRTYGQLKRDSDSIAAFIDSLA--LLAKSPVLVFGA 62
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
+ + +++A+ K+G Y+P++ P + ++++ AKPS++I E+ +E S+
Sbjct: 63 QTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISL 120
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 101 bits (252), Expect = 2e-23
Identities = 49/249 (19%), Positives = 83/249 (33%), Gaps = 40/249 (16%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS-IIVKK 771
+ VTG + GIG ++ K L + G VV R + + L+N+ ++ +
Sbjct: 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQ 68
Query: 772 LDVTIEND-VKKVVREVLAELGHIDILVNNAGVMY------------------------- 805
LDVT + + + G +DILVNNAGV
Sbjct: 69 LDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKI 128
Query: 806 -----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF 860
+ E + +N GV ++P +L I+N+SS+ G +
Sbjct: 129 YEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP-LLQLSDSPRIVNVSSSTGSLKY 187
Query: 861 AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISK 920
+ ++ V + +K D K L+ + Y SK
Sbjct: 188 VSNETALEILGDGDALTEERIDMVVNMLLK-------DFKENLIETNGWPSFGAAYTTSK 240
Query: 921 AVPVLTTKE 929
A T+
Sbjct: 241 ACLNAYTRV 249
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 102 bits (257), Expect = 7e-23
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVG--STVGVLME 72
L A TPD+ A V IT+KQL E +D + ++ ++ S + V
Sbjct: 3 LLEQIEKWAAETPDQTAFV-WRDAKITYKQLKEDSDALAHWISSEY--PDDRSPIMVYGH 59
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPK 132
E I+++ KAG Y+P++ S P ++ + +++ ++++ + V
Sbjct: 60 MQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAV--TVTDLPVRI 117
Query: 133 VKLEND 138
V +N
Sbjct: 118 VSEDNL 123
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein;
four-helix bundle, modular enzyme, domain, flexible
region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB:
2gdw_A 2gdx_A 2gdy_A 2k2q_A
Length = 91
Score = 86.0 bits (214), Expect = 1e-20
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 206 QKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQ 265
+ +A+IW ++L + + +NFF+IGGHSL A ++++ E + L +K LFA PT++
Sbjct: 16 ESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIK 75
Query: 266 EMAALLENKSNE 277
+A + +S+
Sbjct: 76 ALAQYVATRSHH 87
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 95.6 bits (238), Expect = 2e-20
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 33/200 (16%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-------------------AVARRIDRLE 754
+V VTG+ +G+G + GAKVV V I
Sbjct: 17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEI---- 72
Query: 755 NLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKL 814
+ A G + V D KV+ + G +DILVNNAG++ + K
Sbjct: 73 ------RKAGGEAVADYNSVI---DGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSE 123
Query: 815 EEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874
++WN + +V++KG C P M + G I+ SSN+G+ G YT K +
Sbjct: 124 QDWNLVNDVHLKGSFKCTQAAFPYMK-KQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLI 182
Query: 875 GISGALRQEVSDRNIKVTCI 894
G++ + E + N+ I
Sbjct: 183 GLANTVAIEGARNNVLCNVI 202
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 86.2 bits (214), Expect = 3e-18
Identities = 30/204 (14%), Positives = 54/204 (26%), Gaps = 28/204 (13%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
+ G TG LG H + + L R + L L
Sbjct: 16 YAVLGATGLLGHHAARA-IRAAGHDLVLIHRPSSQIQRLAYL------------------ 56
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNL-ILPYNALYKSNVLATKNL 440
+++ + +D +I +A + + S + T
Sbjct: 57 EPECRVAEML-------DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPF 109
Query: 441 IEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN 500
++ YV + P + +D + S Y K +
Sbjct: 110 YAACLQARVPRILYVGSAYAMPRHPQGLPGHEG-LFYDSLPSGKSSYVLCKWALDEQARE 168
Query: 501 AGQMGLPVSIVRCGNIGGSLEFKN 524
+ GLPV I G + G L+
Sbjct: 169 QARNGLPVVIGIPGMVLGELDIGP 192
Score = 49.2 bits (118), Expect = 4e-06
Identities = 21/203 (10%), Positives = 51/203 (25%), Gaps = 58/203 (28%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
V G++ +G + + G +V + R +++ L ++
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA----YLEPECR--VAEMLDHA 69
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
+++ +R + D ++ +AG W + +
Sbjct: 70 GLERALRGL-------DGVIFSAGYYPSR------PRRWQEEVASALGQTN--------- 107
Query: 839 MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD 898
A V +Y G+ + A+ +
Sbjct: 108 --------PFYAACLQARVPRI----LYVGS-------AYAMPRHPQGLPG--------- 139
Query: 899 VKTELLSHSTDRDVVDKYDISKA 921
E L + + Y + K
Sbjct: 140 --HEGLFYDSLPSGKSSYVLCKW 160
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 84.2 bits (209), Expect = 5e-17
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
P K+A+ G I++ +L V L+ +G VG V E+ +E + Y
Sbjct: 11 DKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLY 70
Query: 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
+A +AGG YLPL T+Y L+ + DA+P IV+ D +
Sbjct: 71 LATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAA 116
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 83.7 bits (208), Expect = 8e-17
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 12/136 (8%)
Query: 1 MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQG 60
+ L+D ++R A PD+ A + DG +T + + + + L+ G
Sbjct: 3 LHDFTLAD---------VYRRNAALFPDRTAFMV-DGVRLTHRDYLARAERLASGLLRDG 52
Query: 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120
G V +L + C E A+ G LP+ + VL D PS+V+ +
Sbjct: 53 VHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTD 112
Query: 121 YMDRLE--RTSVPKVK 134
Y D + S+ VK
Sbjct: 113 YRDIVAGVLPSLGGVK 128
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 83.4 bits (207), Expect = 1e-16
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
Query: 15 LHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
+ +M R +A +P A V+ +T+ Q++ + L G G V +LM
Sbjct: 18 IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 77
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
+E+ + K G +P+ T + +L D+ +VI ++
Sbjct: 78 SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDA 131
>3tej_A Enterobactin synthase component F; nonribosomal peptide,
thioesterase, carrier domain, ATP- BIN enterobactin
biosynthesis, ION transport, iron; HET: UF0; 1.90A
{Escherichia coli} PDB: 2roq_A
Length = 329
Score = 81.3 bits (201), Expect = 1e-16
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 209 IAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMA 268
IA + +L D D +FF +GGH L A ++++ +++ ++ + TV ++A
Sbjct: 16 IAAAFSSLLGCDVQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLA 75
Query: 269 ALLENKSNET 278
+++ + + T
Sbjct: 76 TIIDAEEDST 85
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 81.1 bits (201), Expect = 6e-16
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 1/113 (0%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ K A +D D S T+ +L+E + L G + ++M
Sbjct: 25 FAAYLFRLNETRAGKTAYID-DTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDT 83
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
+ ++++ AG + T PA +L + VI G + + +
Sbjct: 84 VALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQ 136
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensatio domain, peptide bond
formation, ligase; 1.85A {Brevibacillus brevis}
Length = 520
Score = 79.5 bits (197), Expect = 2e-15
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 206 QKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQ 265
+ +A++W ++LN+ + ++FF +GGHSL A +S M+ E +++ ++ LF PT+Q
Sbjct: 12 EARLAQVWEQVLNVPQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQ 71
Query: 266 EMAALLEN 273
E+AA +E
Sbjct: 72 ELAAFIEE 79
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 76.9 bits (190), Expect = 2e-15
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
A + + +TG++SG+G ++L GA V+ R + E ++ G + V++LD
Sbjct: 14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA---GQVEVRELD 70
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM 804
+ D+ VR + D+L+NNAG+M
Sbjct: 71 LQ---DLSS-VRRFADGVSGADVLINNAGIM 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.4 bits (192), Expect = 7e-15
Identities = 122/773 (15%), Positives = 230/773 (29%), Gaps = 270/773 (34%)
Query: 1 MD-SVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEW----TDIVGTY 55
MD Y + L +F + D V D ++ +++D + GT
Sbjct: 7 MDFETGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 56 LI------NQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDD 109
+ Q +V V ++ ++ +S I + S +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-------TEQRQPSMMTRMYI----- 113
Query: 110 AKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKFHNHVPIAEEY---RKNLVQ 166
E DRL + K +V + Y R+ L++
Sbjct: 114 ----------EQRDRLYNDNQVFAKY-----------------NVSRLQPYLKLRQALLE 146
Query: 167 NFESLHLSI--LKSSGK--LNKEELPKLDSIAQIELDESMFQSQKNIAKIWCKILNLYTL 222
+ ++ I + SGK + + L Q ++D +F W LNL
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVC--LSYKVQCKMDFKIF---------W---LNLKNC 192
Query: 223 DKDENFFEIGGHSLTAALC--ISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNET-- 278
+ E E+ L I S + S L H E+ LL++K E
Sbjct: 193 NSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 279 LKLDLIHEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLT----GVTGYL-GI 333
L L +V + K+ + N+ C +LLT VT +L
Sbjct: 248 LVLL-----NVQNAKAWNA-FNL--SC---------------KILLTTRFKQVTDFLSAA 284
Query: 334 HLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRL---ILVKSDL 390
L TL TP++ ++LKY L+ L +L +
Sbjct: 285 TTTHISLDHHSMTL------TPDEVK-----SLLLKY-----LDCRPQDLPREVLTTNPR 328
Query: 391 SLEMLG--LKNQ----DEYVSLSYE-----IDMIIHA-------AAFVNL-ILPYNALYK 431
L ++ +++ D + ++ + I+ ++ F L + P +A
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 432 SNVLA--------------TKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADF 477
+ +L+ L ++S + K +S SIY + +Y +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--- 445
Query: 478 DDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNL--YIL 535
IV Y +I + F + +L+ L Y
Sbjct: 446 -----------HRSIVDHY------------NIPKT--------FDSDDLIPPYLDQYFY 474
Query: 536 KAITRLGY-------APDID----WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNP 584
I G+ + +L+F FL + + +T N + I N
Sbjct: 475 SHI---GHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSILN------ 522
Query: 585 IHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRN 644
+ L Y K Y+ N+ +R
Sbjct: 523 -----TLQQLKFY---------------------------------KPYICDNDPKYER- 543
Query: 645 TLALLKSCDETYPETNDHTVR-QFLDNLRNSNLLPNVPLENNNSTEYTDTNKQ 696
L+ + + P+ ++ + ++ D LR + L + + + +KQ
Sbjct: 544 ---LVNAILDFLPKIEENLICSKYTDLLR-------IALMAEDEAIFEEAHKQ 586
Score = 56.0 bits (134), Expect = 6e-08
Identities = 75/540 (13%), Positives = 155/540 (28%), Gaps = 163/540 (30%)
Query: 453 HYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYL--VLNAGQMGLPVSI 510
Y D I + F +++ D D +S + E + ++ + VS
Sbjct: 15 QYQYKD-ILSVFEDAFVDNFDCKDVQDMP-------KSILSKEEIDHIIMSKD---AVSG 63
Query: 511 VRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV 570
F W L+ +++ + + + + S++ +
Sbjct: 64 TL-------RLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYI 113
Query: 571 NNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNK--REL-SEPLI---- 623
+++Y N N + K YN V + + KL + EL +
Sbjct: 114 EQRDRLY---NDNQVFAK----------YN---VSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 624 -----------QILRNKGKE--------YLTVNNSYCQRNTLALLKS-C---DETYPETN 660
+ + + +L + N L +L+ D + +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 661 DHT---------VRQFLDNLRNSNLLPNVPL-----ENNNSTEYTDTN-KQGISISNAGT 705
DH+ ++ L L S N L +N + + + K ++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 706 VNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRL--ENLKTS---- 759
+ + T I + S + VK L+ K + R L E L T+
Sbjct: 278 TDFLSAAT--TTHISLDHHSMTLTPDEVKSLL---LKYLDC--RPQDLPREVLTTNPRRL 330
Query: 760 ------LQNAPG------SIIVKKLDVTIENDVKKV----VREVLAELGHIDILVNNAGV 803
+++ + KL IE+ + + R++ L + +A +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAHI 387
Query: 804 MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863
L + W +I ++ V++ LH ++
Sbjct: 388 PTILLS---LI--WFDVIKSDVMVVVN--------KLHKYS---LVEKQPKES------- 424
Query: 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I I L+ ++ + L H R +VD Y+I K
Sbjct: 425 ------TISIPSIYLELKVKLENE-------------YAL--H---RSIVDHYNIPKTFD 460
Score = 46.8 bits (110), Expect = 4e-05
Identities = 47/371 (12%), Positives = 98/371 (26%), Gaps = 85/371 (22%)
Query: 586 HIKTLVSVLNTYGYNIKTVP-YEKWFHK-LNKRELSEPLIQILRNKGKEYLTVNNSYCQR 643
H+ Y Y + +E F + +++ + IL + E + S
Sbjct: 6 HMDFETGEHQ-YQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSKDAV 61
Query: 644 NTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVP-LENNNSTEYTDTNKQGISISN 702
+ L + E V++F++ + L N L + TE ++
Sbjct: 62 SGTLRLFWTLLSKQEE---MVQKFVEEV----LRINYKFLMSPIKTEQRQ--PSMMTRMY 112
Query: 703 AGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN 762
+ ++ + + K V+ R+ L+ +L
Sbjct: 113 IEQRDRLYND----------------NQVFAKYNVS----------RLQPYLKLRQALLE 146
Query: 763 A-PGSIIVKKLDVTIENDV-------KKV-VREVLAELGHIDILVNNAGVMYFTLMEKYK 813
P ++ + K +V + + + L
Sbjct: 147 LRPAKNVL----------IDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNS 194
Query: 814 LEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873
E M+ + + HS ++ S A +R Y +
Sbjct: 195 PETVLEMLQ-KLLYQIDPNWTSRSD--HSSNIKLRIH-SIQAELRRLLKSKPYENC-LLV 249
Query: 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQS 933
L V + A ++ ++L + + V D + TT IS
Sbjct: 250 ------LL-NVQNAKA----WNAFNLSCKILLTTRFKQVTD------FLSAATTTHISLD 292
Query: 934 IIFALLQPSHS 944
L P
Sbjct: 293 HHSMTLTPDEV 303
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 77.2 bits (191), Expect = 9e-15
Identities = 28/156 (17%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHD-------GRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
L A++ +K A++ + S+ F ++ E T + + + +G G V
Sbjct: 21 LADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHV 80
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL-- 125
GV + +++ ++ A+ + +P+ Y LE +L+D++ + ++ +
Sbjct: 81 GVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140
Query: 126 --ERTSVPKVKL---ENDFLSKMISENEKFHNHVPI 156
E+T V +V + E + LS+++ + +V +
Sbjct: 141 VLEKTGVERVFVVGGEVNSLSEVMDSGSEDFENVKV 176
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 76.9 bits (190), Expect = 1e-14
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 6/124 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ D+ A+ RS+T+ +L + V V
Sbjct: 25 FPALSPAPTGAPADRPALRF-GERSLTYAELAAAAGATAGRIGG-----AGRVAVWATPA 78
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
+E ++ +A AG +PL L +L D+ PS+V+ + ++ +V
Sbjct: 79 METGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVD 138
Query: 135 LEND 138
++
Sbjct: 139 VDVR 142
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 74.9 bits (185), Expect = 4e-14
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 4/113 (3%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
L + QA++ IA+ D S T++ L ++ L S VG+ ++
Sbjct: 3 LDFWLYKQAQQNGHHIAITD-GQESYTYQNLYCEASLLAKRLKAYQ---QSRVGLYIDNS 58
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
++ I A A + T P + + + ++ R +
Sbjct: 59 IQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQ 111
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 74.5 bits (184), Expect = 5e-14
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 1/101 (0%)
Query: 18 MFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
M R A R PD A+ G +T +L + V L G V V+ +
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117
I+ +A+H+ G L A L ++ + + +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI 107
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 73.3 bits (181), Expect = 2e-13
Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ R++A + D+IA+ ++++LD D + G V V + E+
Sbjct: 30 LLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
A+ + G + S+ + + + A+ + I Y R+ +V+ +
Sbjct: 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKL 148
Query: 138 DFLSKMI 144
L +I
Sbjct: 149 PTLKNII 155
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 73.4 bits (181), Expect = 2e-13
Identities = 22/155 (14%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
LH K +++ G T+ ++ V + L G G + + +
Sbjct: 24 LHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS 83
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTS 129
E+ ++++ G PA L ++ ++IT+ Y +++ +
Sbjct: 84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143
Query: 130 VPKVKLEND-----FLSKMISENEKFHNHVPIAEE 159
V + +++ S++ +E V I+ +
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADENEAPQVDISPD 178
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 71.8 bits (177), Expect = 4e-13
Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ + P +A++ R +++ +LD + + T L +G G T V + E+
Sbjct: 35 ILTVGVQSHPHSLAIIC-GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEF 93
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
I + A+ KAG L S+ L + + +P ++I ++ + + N
Sbjct: 94 YIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVN 153
Query: 138 DFLSKMI 144
++
Sbjct: 154 LSPEIIL 160
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 69.3 bits (170), Expect = 5e-13
Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 42/202 (20%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG G LG + L E + L DL+
Sbjct: 5 RLLVTGAAGQLGRVM---------------RER-----LAPMAEILRL-----ADLSPLD 39
Query: 381 ---DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLAT 437
V+ DL+ + + ++ D I+H +++ P+ + + N++
Sbjct: 40 PAGPNEECVQCDLA-------DANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIGL 91
Query: 438 KNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYL 497
NL E + + + S++ + D YG SK E L
Sbjct: 92 YNLYEAARAHGQPRIVFASSNHTI-----GYYPQTERLGPDVPARPDGLYGVSKCFGENL 146
Query: 498 VLN-AGQMGLPVSIVRCGNIGG 518
+ G ++VR G+
Sbjct: 147 ARMYFDKFGQETALVRIGSCTP 168
Score = 34.6 bits (80), Expect = 0.13
Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 45/175 (25%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+A K + VTG++ +G + + L + + R+ L L A + + D
Sbjct: 1 MAMKRLLVTGAAGQLGRVMRERLAPMAEIL-----RLADLSPLD----PAGPNEECVQCD 51
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ N V +V D +V+ G+ +EK + ++ NI G+
Sbjct: 52 LADANAVNAMVAGC-------DGIVHLGGIS----VEK----PFEQILQGNIIGLY---- 92
Query: 834 NILPSMLHSRRPG--HILNISSNAGV------------RPFAGLAVYTGTKYFIE 874
N+ + R G I+ SSN + P +Y +K F E
Sbjct: 93 NLYEAA---RAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGE 144
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 70.7 bits (174), Expect = 9e-13
Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 16 HYMFRN--QAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
+ + + P IA D H +IT+ + E + + + G + V E
Sbjct: 24 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
L++ + + G P Y L + ++ ++P++V + + ++
Sbjct: 84 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKIL 137
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 68.8 bits (168), Expect = 9e-13
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 19/133 (14%)
Query: 703 AGTVNIV---FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS 759
A V +V G ++ K V + +G + L GA+VV R++D+ + S
Sbjct: 103 AAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 162
Query: 760 LQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNN--AGVMYFTLMEKYKLEEW 817
+ N + V + + + V+ + G+ W
Sbjct: 163 V-NKRFKVNVTAAETADDASRAEAVKGA-------HFVFTAGAIGLELLP------QAAW 208
Query: 818 NAMINVNIKGVLH 830
++ I +
Sbjct: 209 QNESSIEIVADYN 221
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 70.4 bits (173), Expect = 2e-12
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 16 HYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
Y+F+N K +++ G T+ + + + G V +L+ C
Sbjct: 65 DYIFQN-ISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNC 123
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTSV 130
E+ +S++A G + PA + + ++IT+ Y+D++ V
Sbjct: 124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGV 183
Query: 131 PKV 133
V
Sbjct: 184 VIV 186
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding,
acyl carrier protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 63.1 bits (153), Expect = 3e-12
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 189 KLDSIAQIELDESMFQSQKNIAKIWCKIL-NLYTLDKDENFFEIGGHSLTAALCISKMNE 247
K + + +EL E+ + + + +W +IL + ++ +FF+ G S+ + ++ E
Sbjct: 10 KGAASSVLELTEAELVTAEAVRSVWQRILPKVLEVEDSTDFFKSGAASVDVVRLVEEVKE 69
Query: 248 ELS-LNLSIKDLFAHPTVQEMAALLENK 274
L L +D++ T + LL K
Sbjct: 70 LCDGLELENEDVYMASTFGDFIQLLVRK 97
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 69.6 bits (171), Expect = 3e-12
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ A D IAV+D R +++++L++ D + L QG G T V + E
Sbjct: 32 ILTRHAA--SDSIAVID-GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAEL 88
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121
I++ A+ K G + S+ + L + +P+++I ++
Sbjct: 89 YITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQH 132
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 69.2 bits (170), Expect = 3e-12
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 15 LHYMFRNQAKRTPD--KIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
R +R IA + G ++ + E + +G L N G +V + +
Sbjct: 25 AGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCS 84
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
E C E+ I IA G G P Y L L +KP+IV + + +D++
Sbjct: 85 ENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVI 139
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 68.0 bits (167), Expect = 7e-12
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 20 RNQAKRTPDKIAV--VDHDG--RSITFKQLDEWTDIVGTYLINQGCIV-GSTVGVLMERC 74
+A + P A+ V+ G F++L E + L + G V V++ R
Sbjct: 50 MEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPK 132
EW + + +AG ++P + L +K ++ E + ++ + P
Sbjct: 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS 169
Query: 133 VK 134
++
Sbjct: 170 LR 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 2e-10
Identities = 103/605 (17%), Positives = 170/605 (28%), Gaps = 228/605 (37%)
Query: 94 LETSYP-PALL---ESVLDD------AKPSIVITKGEYMDRLERTSVPKVKLENDFLSKM 143
LE P S L + +P+ + E T+ +L FL +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD-----EPTTP--AELVGKFLGYV 68
Query: 144 ISENEKFHNHVPIAEEYRKNLVQNFESLHL------SILKSSGKLNKEELPKLDSI---- 193
S E + V ++ + FE+ +L ++ + N L K +
Sbjct: 69 SSLVEP--SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 194 --AQIELDESM--------FQS-QKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCI 242
A+I F++ + A++ + F GG T
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQL-------VAI------F--GGQGNTDD-YF 170
Query: 243 SKMNEELSLNLSIKDLFA------HPTVQEMAALLENKSNETLKLDLIHE--IDVNSYKS 294
EEL +DL+ ++ A L TL + + +++ +
Sbjct: 171 ----EEL------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-- 218
Query: 295 LDE-----------------NLNVRVQCFWKSVQLNSNKLKYGNVL--LTGVTG------ 329
L+ L +Q V G + L G TG
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 330 ------------------YLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYH 371
I +L F + +C PN +L +L+
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVL--FFIGVRCY-----EAYPNTSL----PPSILED- 326
Query: 372 MSLDLNNYTDRLILVKSDLSLE----MLGLKNQ----DEYVSLSYEIDMIIHAAAFVNLI 423
SL+ N +L S+L+ E + N + V +S ++ A V
Sbjct: 327 -SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS----LVNGAKNLV--- 378
Query: 424 L--PYNALYKSNVL-----ATKNL----IEFS---------FLNKIKS-FHYVSTDSIY- 461
+ P +LY N+ A L I FS FL + S FH S
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFH-----SHLL 432
Query: 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCG----NIG 517
S+ +D + NA + +PV G +
Sbjct: 433 VPASDLINKDLVKNNVS--------------------FNAKDIQIPVYDTFDGSDLRVLS 472
Query: 518 GSLEFKNWNLVDLNLYILKAITRLGYAPDIDW--YLEFTP---VDF----------LTKS 562
GS+ +VD I RL P + W +F +DF LT
Sbjct: 473 GSISE---RIVD-------CIIRL---P-VKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 563 LVQLT 567
T
Sbjct: 519 NKDGT 523
Score = 57.4 bits (138), Expect = 2e-08
Identities = 111/655 (16%), Positives = 198/655 (30%), Gaps = 219/655 (33%)
Query: 231 IGGHSLTAALCISKMNEELSLNLS---------IKDLFAH----PTVQEMAALLENKSNE 277
+ +S L +S + E L + +++ F PT + AA E +
Sbjct: 1 MDAYSTRP-LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT-EGFAADDEPTTPA 58
Query: 278 TLK---LDLI-HEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLG- 332
L L + ++ + D+ LN+ + F YL
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--------------------ENCYLEG 98
Query: 333 --IH-LLQKFLVDTKCTLFC-----------------PVRETPNKTLLQRLED----IML 368
IH L K L + TL P + N L + + + ++
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 369 ---------KYHMSLD-L----NNYT---DRLILVKSDLSLEMLGLKNQDEYVSLSYEID 411
Y + L Y LI ++ L L D + ++
Sbjct: 159 IFGGQGNTDDY---FEELRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQGLN 214
Query: 412 MI--IHAAAFVNLILPYNALYKSNVLATKNLIEFSF-LNKIKSF-HYVSTDSIYPSTSEN 467
++ + + P + Y L + I S L + HYV T +
Sbjct: 215 ILEWLENPS----NTP-DKDY----LLS---IPISCPLIGVIQLAHYVVTAKLL------ 256
Query: 468 FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNW-N 526
+T + ++ +G+ Q GL ++ I + +W +
Sbjct: 257 ---GFTPGELRSYLKGATGHSQ---------------GLVTAVA----IAET---DSWES 291
Query: 527 LVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIH 586
+ + +G E P L S+++ + N P
Sbjct: 292 FFVSVRKAITVLFFIGVRC-----YEAYPNTSLPPSILEDSLENN---------EGVPSP 337
Query: 587 IKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQI-LRNKGKEYLTVNNS------ 639
++S+ + V + + +K N + ++I L N G + L V S
Sbjct: 338 ---MLSIS---NLTQEQV--QDYVNKTNSHLPAGKQVEISLVN-GAKNLVV--SGPPQSL 386
Query: 640 YCQRNTLALLKSCDETYPETND-----HTVRQFLDNLRNSN-LLP-NVP-----LENNNS 687
Y TL K+ P D + R+ L+ SN LP P L +
Sbjct: 387 YGLNLTLRKAKA-----PSGLDQSRIPFSERK----LKFSNRFLPVASPFHSHLLVPASD 437
Query: 688 TEYTDTNKQGISISNAGTVNI-VFGNTLANKVIFVTGS-----SSGIGEQLVKDLVTL-- 739
D K +S NA + I V+ +T GS S I E++V ++ L
Sbjct: 438 LINKDLVKNNVSF-NAKDIQIPVY-DT-------FDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 740 ---GAKVVAVARRID-------RLENLKTSLQNAPGS----IIVKKLDVTIENDV 780
+D L L T +N G+ I+ LD+ ++D
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVL-TH-RNKDGTGVRVIVAGTLDINPDDDY 541
Score = 51.6 bits (123), Expect = 1e-06
Identities = 108/731 (14%), Positives = 191/731 (26%), Gaps = 304/731 (41%)
Query: 291 SYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLG--------IHLLQKFLVD 342
S+ SL+ L V F+ + QL K L T L+ KFL
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKI----LPEPTEGFAADDEPTTPAELVGKFL-- 65
Query: 343 TKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQDE 402
+ + Q + +L L L + + L+ D
Sbjct: 66 ----GYV-SSLVEPSKVGQFDQ--VLN----LCLTEFENCY-------------LEGND- 100
Query: 403 YVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYP 462
IHA A L + ++ TK LI+ N I +
Sbjct: 101 -----------IHALA---AKLLQEN--DTTLVKTKELIK----NYITARIMAKRPFDKK 140
Query: 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEF 522
S S F+ V + G +++ + GQ GN E
Sbjct: 141 SNSALFR---AVGE-----------GNAQL---VAIFG-GQ----------GNTDDYFE- 171
Query: 523 KNWNLVDL-NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFIN 581
+L +LY Y + + + F ++L +L +A K++
Sbjct: 172 ------ELRDLYQT-------YHVLVG---DL--IKFSAETLSELIRTTLDAEKVF---- 209
Query: 582 TNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKR---------ELSEPLIQILRNKGKE 632
T G NI +W + +S PLI ++
Sbjct: 210 --------------TQGLNIL-----EWLENPSNTPDKDYLLSIPISCPLIGVI------ 244
Query: 633 YLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPLENNNSTEYTD 692
Q LA ++ + P E + +
Sbjct: 245 ---------Q---LA------------------HYVVTAKLLGFTPG---ELRSYLKGAT 271
Query: 693 TNKQGI----SISNAGTVNIVFGNTL-ANKVIFVTG-------SSSGIGEQLVKD----- 735
+ QG+ +I+ + F + A V+F G ++ + +++D
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 736 -------LVTLGAKVVAVARRIDRL-------ENLKTSLQNAPGSIIV------------ 769
L V +++ + ++ SL N +++V
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 770 --KKLDVTIENDVKKVV---REVLAELGHIDILVNNAGVMYF---------TLMEKY--K 813
+K D ++ R++ F L+
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKL-------------KFSNRFLPVASPFHSHLLVPASDL 438
Query: 814 LEEWNAMINVNIKG------VLH---------CIGNILPSM-------------LHSRRP 845
+ + NV+ V G+I + +
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 846 GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD-RNIKVTCIQAGDVKTELL 904
HIL+ F G G G+ G L D ++V I AG L
Sbjct: 499 THILD---------F-G----PGG---ASGL-GVLTHRNKDGTGVRV--IVAGT-----L 533
Query: 905 SHSTDRDVVDK 915
+ D D K
Sbjct: 534 DINPDDDYGFK 544
Score = 49.3 bits (117), Expect = 7e-06
Identities = 47/296 (15%), Positives = 87/296 (29%), Gaps = 116/296 (39%)
Query: 606 YEK-------W----FHKLNKRELSEPLIQILRNKGKEYLTVNNS-----YCQRNTLALL 649
Y+ W H + S ++ I+ N LT++ + N A+
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFS--ILDIVINNPVN-LTIHFGGEKGKRIRENYSAM- 1691
Query: 650 KSCDETYPETNDHTVRQFLD-NLRNSNLL---PNVPLENNNSTEYT-------------D 692
ET + T + F + N +++ L ++T++T D
Sbjct: 1692 --IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL---SATQFTQPALTLMEKAAFED 1746
Query: 693 TNKQGI----------SI-------SNAG------TVNIVF--GNTLANKV--------- 718
+G+ S+ S A V +VF G T+ V
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 719 ---IFVTGSS--SGIGEQLVKDLVTLGAK----VVAVARRIDRLENLKTSLQNAPGSIIV 769
I + + ++ ++ +V K +V + N N V
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-------NY-----NVENQQYV 1854
Query: 770 KKLDVTIENDVKKV--VREVLAELGH--IDILVNNAGVMYFTLMEKYKLEEWNAMI 821
D++ + V VL + IDI+ L + LEE +
Sbjct: 1855 ------AAGDLRALDTVTNVLNFIKLQKIDII---------ELQKSLSLEEVEGHL 1895
Score = 48.5 bits (115), Expect = 1e-05
Identities = 86/587 (14%), Positives = 165/587 (28%), Gaps = 264/587 (44%)
Query: 518 GSLEFKNWNLVDLNLYILKAITRL-------------GYAPDID---------WYLEFT- 554
GSLE LV + ++L G+A D + +L +
Sbjct: 14 GSLEH-VL-LVPTASFF--IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 555 ----------PVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVS------------ 592
L L + ++ N IH L +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENC---------YLEGNDIH--ALAAKLLQENDTTLVK 118
Query: 593 ---VLNTYGYNIKTV---PYEK-----------------------------WFHKLNKRE 617
++ Y + + P++K +F +L R+
Sbjct: 119 TKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL--RD 175
Query: 618 L---SEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674
L L+ L E L + ++ + + + + ++L+N
Sbjct: 176 LYQTYHVLVGDLIKFSAETL--------SELIRTTLDAEKVFTQGLN--ILEWLEN---- 221
Query: 675 NLLPN-VPLENNNSTEYTDTNKQGISISNAGTVNIVFGNTLANKVIF--VTGSSSG-IGE 730
P+ P +Y + I IS ++ LA+ V+ + G + G +
Sbjct: 222 ---PSNTP-----DKDYLLS----IPIS----CPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 731 QL------VKDLVTLGAKVVAVARRIDR-LENLKTSL-----------QNAPG-SIIVKK 771
L + LVT A +A + +++ ++ + P S+
Sbjct: 266 YLKGATGHSQGLVT--AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 772 LDVTIEND-----------------VKKVVREV---LAELGHIDI-LVNNAGVMYFTLME 810
L+ ++EN+ V+ V + L ++I LVN A
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-------- 375
Query: 811 KYKLEEWNAMINVNIKG---VLHCIGNIL-----PSML------HSRRPGHI----LNIS 852
N+ + G L+ + L PS L S R L ++
Sbjct: 376 -----------NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 853 SNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV 912
S PF + + S + +++ N+ A D++
Sbjct: 425 S-----PFH-------SHL-LVPASDLINKDLVKNNVS---FNAKDIQ------------ 456
Query: 913 VDKYDISKAVPVLTTK------EISQSIIFALLQPSHSAVNSILIEP 953
+PV T +S SI + V+ I+ P
Sbjct: 457 ---------IPVYDTFDGSDLRVLSGSISERI-------VDCIIRLP 487
Score = 46.2 bits (109), Expect = 5e-05
Identities = 47/309 (15%), Positives = 87/309 (28%), Gaps = 127/309 (41%)
Query: 122 MDRLERTSVPK-------VKLENDF---LSKMISENEK---FHNHVPIAEEYRKNLVQ-N 167
MD + + + ++ + + ++ N H + R+N
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 168 FESLHLSILKSSGKLNKEELPKLDSIAQIELDES----MFQSQKNIAKIWCKILNL--YT 221
FE+ GKL E++ K E++E F+S+K + L+ +T
Sbjct: 1693 FET------IVDGKLKTEKIFK-------EINEHSTSYTFRSEKGL-------LSATQFT 1732
Query: 222 -------------------LDKDENFFEIGGHSL---TAALCISKMNEELSLNLSIKDL- 258
L + F GHSL A ++ + +SI+ L
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATF--AGHSLGEYAALASLADV-------MSIESLV 1783
Query: 259 --------FAHPTVQE---------MAALLENKSNETLKLDLIHEIDVNSYKSLDE---- 297
V M A+ + + + + + K
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 298 -NLNVRVQCFWKSVQ----------------LNSNKLKYGNVLLTGVTGYLGIHLLQKFL 340
N NV Q Q LN KL+ + + I L +
Sbjct: 1844 VNYNVENQ------QYVAAGDLRALDTVTNVLNFIKLQ--KIDI--------IELQKSLS 1887
Query: 341 VD-TKCTLF 348
++ + LF
Sbjct: 1888 LEEVEGHLF 1896
Score = 35.8 bits (82), Expect = 0.097
Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 61/204 (29%)
Query: 33 VDHDGRSITFK----QLD--EWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTI----SY 81
++ S TF+ L ++T Q + + L + +
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFT---------QPALT--LMEKAAFEDLKSKGLIPADAT 1758
Query: 82 IAIH--------KAGGGYLPLETSYPPALLESV------LDDAKPSIVITKGEY-MDRLE 126
A H + + +E +L+E V + A P + + Y M +
Sbjct: 1759 FAGHSLGEYAALASLADVMSIE-----SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 127 RTSVPKVKLENDFLSKMISENEKFHNH-VPIAEEYRKNLVQNFESLHLSILKSSGKLNK- 184
V + L ++ K V I N N E+ +G L
Sbjct: 1814 PGRV-AASFSQEALQYVVERVGKRTGWLVEIV-----NY--NVENQQYVA---AGDLRAL 1862
Query: 185 EELP------KLDSIAQIELDESM 202
+ + KL I IEL +S+
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSL 1886
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 63.0 bits (154), Expect = 3e-10
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 23 AKRTPDKIAV--VDHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
A+ +P+K+A+ D G + TFK L ++D + + G G V + ++ ++
Sbjct: 66 ARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125
Query: 79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120
+ +HK G +P + ++ A +++ E
Sbjct: 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAE 167
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 60.3 bits (147), Expect = 9e-10
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 375 DLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNV 434
+N+Y SD +LE + ++ ++D ++H AA + + N
Sbjct: 40 AINDYE----YRVSDYTLE--------DLINQLNDVDAVVHLAATRGSQGKISE-FHDNE 86
Query: 435 LATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVADFDDFMTTTSGYGQSKIV 493
+ T+NL + + N I + Y ST S Y + + E YG SK+
Sbjct: 87 ILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKELPL-------PDLMYGVSKLA 139
Query: 494 SEYLVLNAGQM-GLPVSIVRCGNI 516
E++ + GL + +R ++
Sbjct: 140 CEHIGNIYSRKKGLCIKNLRFAHL 163
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 59.3 bits (144), Expect = 2e-09
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 49/205 (23%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
+L+TG +G +G L+ + K ++ DI + T
Sbjct: 2 ILVTGSSGQIGTELVPYLA-----------EKYGKKNVI--ASDI---------VQRDTG 39
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSL--SYEIDMIIHAAAFV------NLILPYNALYKSN 433
+ + D+S N+DE Y ID I H A + + P A YK N
Sbjct: 40 GIKFITLDVS-------NRDEIDRAVEKYSIDAIFHLAGILSAKGEKD---PALA-YKVN 88
Query: 434 VLATKNLIEFSFLNKIKSFHYVSTDSIY-PSTSENFQEDYTVADFDDFMTTTSGYGQSKI 492
+ T N++E + ++++ ST ++ P T +N T+ + +G +KI
Sbjct: 89 MNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITI------TRPRTMFGVTKI 142
Query: 493 VSEYLVLNAGQM-GLPVSIVRCGNI 516
+E L + GL V +R I
Sbjct: 143 AAELLGQYYYEKFGLDVRSLRYPGI 167
Score = 29.2 bits (66), Expect = 6.9
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 23/119 (19%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
+I VTGSS IG +LV L K + ++ G I LDV+
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKKNVI------ASDIVQ---RDTGGIKFITLDVSNR 51
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+++ + V + ID + + AG++ + L VN+ G NIL
Sbjct: 52 DEIDRAVEK-----YSIDAIFHLAGILSAKGEKDPAL-----AYKVNMNGTY----NIL 96
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 57.8 bits (140), Expect = 9e-09
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 18/124 (14%)
Query: 18 MFRNQAKRTPDKIAVV------DHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGV 69
R A+ P A D DG ++T+ QL T V L G G V +
Sbjct: 29 ALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVI 87
Query: 70 LMERCLEWTISYIAIHKAGGGYLPLETSYPPAL------LESVLDDAKPSIVITKGEYMD 123
+ LE+ ++++ +AG +PL P +SVL D+ P ++T +D
Sbjct: 88 SAPQGLEYVVAFLGALQAGRIAVPL---SVPQGGVTDERSDSVLSDSSPVAILTTSSAVD 144
Query: 124 RLER 127
+ +
Sbjct: 145 DVVQ 148
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 58.1 bits (141), Expect = 1e-08
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 18 MFRNQAKRTPDKIAVV---DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ R +A +P+K + ++T++QLD+ + L +G G V +L
Sbjct: 16 VVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG 75
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPAL------LESVLDDAKPSIVITKGEYMDRLER 127
L +++ AG +P+ YPPA + ++ ++KP IV+ +++ +
Sbjct: 76 LPLIQAFLGCLYAGCIAVPI---YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTA 131
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 57.3 bits (139), Expect = 2e-08
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 15/122 (12%)
Query: 18 MFRNQAKRTPDKIAVVDHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75
A + + ++ L + L++ G V ++ E
Sbjct: 26 ALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSS 85
Query: 76 EWTISYIAIHKAGGGYLPLETSYPPAL----------LESVLDDAKPSIVITKGEYMDRL 125
E+ ++ A AG +PL P L+ +L +P+ +IT E++ +
Sbjct: 86 EFVEAFFACQYAGLVAVPL---AIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLV 142
Query: 126 ER 127
Sbjct: 143 NA 144
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 55.5 bits (133), Expect = 4e-08
Identities = 49/306 (16%), Positives = 94/306 (30%), Gaps = 43/306 (14%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
L+ GVTG +G L + + V +T ED + ++ D+++ D
Sbjct: 4 ALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPIN-YVQCDISDPDD 62
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILP-YNALYKSNVLATKNL 440
+ + + H ++N +N+
Sbjct: 63 SQAKLS---------------------PLTDVTHVFYVTWANRSTEQENCEANSKMFRNV 101
Query: 441 IE--FSFLNKIKSFHYVSTDSIYPSTSENF---QEDYTVADFDDF--MTTTSGYGQSKIV 493
++ +K + Y E++ + D Y I+
Sbjct: 102 LDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIM 161
Query: 494 SEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL--------GYAP 545
E + + GL S+ R GNI G + NLV L + AI + G
Sbjct: 162 LEEV---EKKEGLTWSVHRPGNIFGFSPYSMMNLVGT-LCVYAAICKHEGKVLRFTGCKA 217
Query: 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVP 605
D Y + + D + + + + N+ +N N + K VL + ++
Sbjct: 218 AWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQ-FGVECGE 276
Query: 606 YEKWFH 611
YE+
Sbjct: 277 YEEGVD 282
Score = 41.3 bits (96), Expect = 0.001
Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 25/134 (18%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGA-----KVVAVARRIDRLENLKTSLQNAPGSIIVK 770
+ V + G + IG L + L KV VARR + I
Sbjct: 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARR-------TRPAWHEDNPINYV 53
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+ D++ +D + L+ L + + T N K +
Sbjct: 54 QCDISDPDD----SQAKLSPLTDVTHVFYVTWANRST---------EQENCEANSKMFRN 100
Query: 831 CIGNILPSMLHSRR 844
+ ++P+ + +
Sbjct: 101 VLDAVIPNCPNLKH 114
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 54.2 bits (130), Expect = 1e-07
Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 31/220 (14%)
Query: 409 EIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENF 468
+ D I+H A VN NV ++++ N K +S+ +
Sbjct: 46 KADFIVHLAG-VNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNP-- 102
Query: 469 QEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN-AGQMGLPVSIVRCGNIGGSLEFKNWNL 527
YG+SK+ E L+ A + G V I R N+ G N+N
Sbjct: 103 ------------------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNS 144
Query: 528 VDLNLYIL----KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNA-NKIYNFINT 582
V + I ++ VD + + + N + N
Sbjct: 145 VIATFCYKIARNEEIQVNDRNVELT----LNYVDDIVAEIKRAIEGTPTIENGVPTVPNV 200
Query: 583 NPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPL 622
+ + +V +L + + K + K S L
Sbjct: 201 FKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYL 240
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 52.7 bits (127), Expect = 2e-07
Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 36/198 (18%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
+L+TG G +G + L + RL DI +DL
Sbjct: 5 LLVTGAAGGVGSAIRPH-LGTLAHEV--------------RLSDI-------VDLGAAEA 42
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLI 441
+V DL+ + L + D IIH V++ P+N + ++N++ NL
Sbjct: 43 HEEIVACDLA-------DAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANIIGAYNLY 94
Query: 442 EFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSE-YLVLN 500
E + + S++ + T D + S YG SK E L
Sbjct: 95 EAARNLGKPRIVFASSNHTI-----GYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLY 149
Query: 501 AGQMGLPVSIVRCGNIGG 518
+ + +R G+
Sbjct: 150 YHKFDIETLNIRIGSCFP 167
Score = 34.2 bits (79), Expect = 0.14
Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 45/170 (26%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+ VTG++ G+G + L TL +V + + A I+ D+
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRL-------SDIVDLGAAEAHEEIV--ACDLADAQ 55
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
V +V++ D +++ GV WN ++ NI G N+ +
Sbjct: 56 AVHDLVKDC-------DGIIHLGGV--------SVERPWNDILQANIIGAY----NLYEA 96
Query: 839 MLHSRRPG--HILNISSNAGV------------RPFAGLAVYTGTKYFIE 874
R G I+ SSN + P ++Y +K F E
Sbjct: 97 A---RNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGE 143
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 51.6 bits (124), Expect = 7e-07
Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 54/223 (24%)
Query: 312 LNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYH 371
+N++KL NV++ G G++G +L+++ L +
Sbjct: 25 MNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHV---------------------- 62
Query: 372 MSLDLNNYT----------DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVN 421
+D N + ++ ++ + SL E D + H A +
Sbjct: 63 --VD--NLLSAEKINVPDHPAVRFSETSIT-------DDALLASLQDEYDYVFHLATYHG 111
Query: 422 LIL----PYNALYKSNVLATKNLIEFS-FLNKIKSFHYVSTDSIY--PSTSENFQEDYTV 474
P ++N L T L E ++K Y + + + + T
Sbjct: 112 NQSSIHDPLADH-ENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEET- 169
Query: 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGNI 516
D S Y SKI E+ + + LP R N+
Sbjct: 170 -DIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNV 211
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier
protein, holo, phosphopantetheine, transport protein;
HET: PNS; NMR {Aspergillus parasiticus}
Length = 89
Score = 46.4 bits (110), Expect = 1e-06
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 222 LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKD--LFAHPTVQEMAALL 271
L D NF ++G SL++ + S+ E+L L+L + TV+ + +
Sbjct: 31 LTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFM 82
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 50.7 bits (122), Expect = 1e-06
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 61/213 (28%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK-TLLQRLEDIMLK-YHMSLDLNN 378
+L+TG TG G ++K L T K + R E LK M+++ N+
Sbjct: 23 TILITGGTGSFGKCFVRKVLDTTN----------AKKIIVYSRDE---LKQSEMAMEFND 69
Query: 379 YTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAF-------VNLILPYNALYK 431
R+ D+ ++ + +D+ IHAAA N P + K
Sbjct: 70 --PRMRFFIGDV-------RDLERLNYALEGVDICIHAAALKHVPIAEYN---PLECI-K 116
Query: 432 SNVLATKNLIEFSFLNKIKSFHYVSTD-SIYPSTSENFQEDYTVADFDDFMTTTSGYGQS 490
+N++ N+I N I +STD + P N YG +
Sbjct: 117 TNIMGASNVINACLKNAISQVIALSTDKAANPI---NL------------------YGAT 155
Query: 491 KIVSEYLVLNA----GQMGLPVSIVRCGNIGGS 519
K+ S+ L ++A G S+VR GN+ GS
Sbjct: 156 KLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGS 188
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 50.5 bits (121), Expect = 1e-06
Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 23/134 (17%)
Query: 408 YEIDMIIHAAAFVN----LILPYNAL--YKSNVLATKNLIE-----FSFLNKIKS----- 451
+E D ++H + +I A+ +NV+ T N++ + +K
Sbjct: 99 FEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGE 158
Query: 452 --FHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPV 508
+ + Y + + N + D +S Y SK+ + + + G+
Sbjct: 159 YGTPNIDIEEGYITITHNGRTDTLPYPKQ----ASSFYHLSKVHDSHNIAFTCKAWGIRA 214
Query: 509 SIVRCGNIGGSLEF 522
+ + G + G
Sbjct: 215 TDLNQGVVYGVKTD 228
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 49.6 bits (119), Expect = 2e-06
Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 17/187 (9%)
Query: 408 YEIDMIIHAAAFVN---LILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY-PS 463
++I I AA ++ P A + N+ + +++ + KIK + S+ +++ P+
Sbjct: 67 HKITDIYLMAALLSATAEKNPAFA-WDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPT 125
Query: 464 TSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGNIGGSLEF 522
T + YT+ M ++ YG SK E + G+ V +R +
Sbjct: 126 TPKENTPQYTI------MEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTP 179
Query: 523 KNWNLVDLNLYILKAITRLGYAPDI----DWYLEFTPVDFLTKSLVQLTTNVNNANKIYN 578
D + I + + + +D + + + KI++
Sbjct: 180 PGGGTTDYAVDIFYKAIA-DKKYECFLSSETKMPMMYMDDAIDATINIMKAPVEKIKIHS 238
Query: 579 FINTNPI 585
N +
Sbjct: 239 SYNLAAM 245
Score = 28.8 bits (65), Expect = 7.8
Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 30/126 (23%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAK--VVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
N I + G+ IG +L + L L V+A R + + S + ++
Sbjct: 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVN--------SGPFEVVN 53
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNA---GVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
N ++ +V I + A EK W ++N+ +
Sbjct: 54 ALDFNQIEHLVEV-----HKITDIYLMAALLSATA----EKNPAFAW----DLNMNSLF- 99
Query: 831 CIGNIL 836
++L
Sbjct: 100 ---HVL 102
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
synthase, drug complex, tetrahydrolipstatin,
transferase; HET: DH9; 2.30A {Homo sapiens}
Length = 316
Score = 48.8 bits (116), Expect = 4e-06
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 232 GGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNETLKLDLIHEI--DV 289
G H+L + L+++ L +P + L +S+E L L+H I
Sbjct: 1 GSHNLACPTPKEDGLAQQQTQLNLRSLLVNPEGPTLMRLNSVQSSER-PLFLVHPIEGST 59
Query: 290 NSYKSLDENLNVRV 303
+ SL L++
Sbjct: 60 TVFHSLASRLSIPT 73
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 48.4 bits (116), Expect = 5e-06
Identities = 50/297 (16%), Positives = 94/297 (31%), Gaps = 59/297 (19%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLD-LNNY 379
V +TG+ G +G H+ + LL+R + ++ +D
Sbjct: 23 KVFITGICGQIGSHIAEL--------------------LLERGDKVVG-----IDNFATG 57
Query: 380 TDRLILVKSDLSLEMLGLKNQDEYVSL--SYEIDMIIHAAAFVNLILPYNALYKSNVLAT 437
+ +L+ + + L + D ++H AA + +N +
Sbjct: 58 RREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGG 117
Query: 438 KNLIEFSFLNKIKSFHYVSTDSIYPSTSEN--FQEDYTVADFDDFMTTTSGYGQSKIVSE 495
N+++ + N + F Y T Y + D+ S Y SK +E
Sbjct: 118 SNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRN------PANSSYAISKSANE 171
Query: 496 -YLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI-----DW 549
YL + GL R N+ G N+ + ++ G + D
Sbjct: 172 DYLEYS----GLDFVTFRLANVVGP-----RNVSGPLPIFFQRLSE-GKKCFVTKARRD- 220
Query: 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVP 605
F V L ++ V+ V + Y+F + + IK L + P
Sbjct: 221 ---FVFVKDLARATVRAVDGV--GHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEP 272
Score = 28.7 bits (65), Expect = 8.3
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKT----SLQNAPGSIIVKKLDV 774
+F+TG IG + + L+ G KVV ID N T L++ P V + +
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVG----ID---NFATGRREHLKDHPNLTFV-EGSI 75
Query: 775 TIENDVKKVVREVLAELGHIDILVNNA 801
V +++ ++ D +V+ A
Sbjct: 76 ADHALVNQLIGDL-----QPDAVVHTA 97
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR
{Pseudomonas fluorescens}
Length = 212
Score = 46.8 bits (111), Expect = 9e-06
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 222 LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
L F ++G S+T + ++ S+ L+ ++ PT++ +A +
Sbjct: 150 LRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEV 199
Score = 45.7 bits (108), Expect = 2e-05
Identities = 11/58 (18%), Positives = 24/58 (41%)
Query: 221 TLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNET 278
+ F E+G S+ AA I ++N+ L + ++ +P + + + T
Sbjct: 45 QIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPADGIYTYPVFKAFTQWVGTQLQPT 102
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 47.2 bits (113), Expect = 2e-05
Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 35/140 (25%)
Query: 408 YEIDMIIHAAA-------------FVNLILPYNALYKSNVLATKNLIEFSFLNKIKS-FH 453
Y D H A + NV T NL+E
Sbjct: 72 YMPDSCFHLAGQVAMTTSIDNPCMDF----------EINVGGTLNLLEAVRQYNSNCNII 121
Query: 454 YVSTDSIY----PSTSENFQEDYTVADFDDFMT-TT-----SGYGQSKIVSEYLVLNAGQ 503
Y ST+ +Y + YT D + +T S YG SK ++ +L+ +
Sbjct: 122 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 181
Query: 504 M-GLPVSIVRCGNIGGSLEF 522
+ GL + R ++ G +F
Sbjct: 182 IFGLNTVVFRHSSMYGGRQF 201
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 47.0 bits (112), Expect = 2e-05
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 393 EMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALY-----KSNVLATKNLIEFSFLN 447
++ L+ + + ++ +D + + AA + + + +N + + N+IE + +N
Sbjct: 77 HLVDLRVMENCLKVTEGVDHVFNLAADMGGMG-FIQSNHSVIMYNNTMISFNMIEAARIN 135
Query: 448 KIKSFHYVSTDSIYPSTSENFQ-EDYTVADFDDFMTTTSGYGQSKIVSEYLVLN-AGQMG 505
IK F Y S+ IYP + +G K+ +E L + G
Sbjct: 136 GIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFG 195
Query: 506 LPVSIVRCGNIGG 518
+ I R NI G
Sbjct: 196 IECRIGRFHNIYG 208
Score = 38.5 bits (90), Expect = 0.009
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
N I +TG+ I + + L G V+A + E++ +
Sbjct: 29 NLKISITGAGGFIASHIARRLKHEGHYVIAS--DWKKNEHMTE-DMFCDEFHL------- 78
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNI 825
++ V + +V + H+ L + G M F + N MI+ N+
Sbjct: 79 VDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNM 128
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 47.6 bits (113), Expect = 2e-05
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 713 TLANKVIFVTGSSSG-IGEQLVKDLVTLGAKVVAVARRIDR 752
T +K + +TG+ G IG ++++ L+ GAKVV R +
Sbjct: 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK 513
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 46.6 bits (111), Expect = 2e-05
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 28/128 (21%)
Query: 398 KNQDEYVSLSYEIDMIIHAAAF--VNLI-LPYN--ALYKSNVLATKNLIEFSFLNKIKSF 452
D ++ + D +++ +A V P+ + NV T I+ S K +
Sbjct: 101 IEYDAFIKADGQYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKY 160
Query: 453 HYVSTD-SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIV 511
VSTD + P + G SK + E + L + +S
Sbjct: 161 FCVSTDKAANP---------------------VNMMGASKRIME-MFLMRKSEEIAISTA 198
Query: 512 RCGNIGGS 519
R N+ S
Sbjct: 199 RFANVAFS 206
Score = 34.3 bits (79), Expect = 0.19
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 37/164 (22%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLEN--------LKTSLQN 762
+ ++ V G + IG+ + K++ + + V +D EN +++S
Sbjct: 30 QSVVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHV---VDISENNMVELVRDIRSSFGY 86
Query: 763 APGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYK---LEEWN- 818
G LD+ + + G D ++N + K E+
Sbjct: 87 INGDFQTFALDIGSIEYDAFIKAD-----GQYDYVLNLSA---------LKHVRSEKDPF 132
Query: 819 ---AMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP 859
MI+VN+ I +S++ P
Sbjct: 133 TLMRMIDVNVFNTDKTI-----QQSIDAGAKKYFCVSTDKAANP 171
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 46.3 bits (110), Expect = 3e-05
Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 62/213 (29%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
VL+ GV G++G HL ++ L T +F ++ T
Sbjct: 26 KVLILGVNGFIGHHLSKRILETTDWEVFG--------------------------MDMQT 59
Query: 381 DRL---------ILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVN----LILPYN 427
DRL + D++ N++ + D+I+ A + P
Sbjct: 60 DRLGDLVKHERMHFFEGDIT------INKEWVEYHVKKCDVILPLVAIATPATYVKQPLR 113
Query: 428 ALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENF--QEDYTVA-DFDDFM--- 481
+ + A ++ + PSTSE + D D
Sbjct: 114 VF-ELDFEANLPIVRSAVKYGKHLVF--------PSTSEVYGMCADEQFDPDASALTYGP 164
Query: 482 --TTTSGYGQSKIVSEYLVLNAGQMGLPVSIVR 512
Y SK + + ++ G GL ++ R
Sbjct: 165 INKPRWIYACSKQLMDRVIWGYGMEGLNFTLFR 197
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 45.1 bits (107), Expect = 6e-05
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 34/207 (16%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
++ + G G +G L Q+ + D + +E L +D
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKD-------------GSLGGKPVEKFTL-----ID-VFQP 56
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSL-SYEIDMIIHAAAFV------NLILPYNALYKSN 433
+ + L E L D+I H AA V + Y+ N
Sbjct: 57 EAPAGFSGAVDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDK-G---YRIN 112
Query: 434 VLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENF-QEDYTVADFDDFMTTTSGYGQSKI 492
+ T+ L + + K + ++ S+ F + T + YG K
Sbjct: 113 LDGTRYLFDAIRIANGKDGYKPR--VVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKA 170
Query: 493 VSEYLVLNAGQM-GLPVSIVRCGNIGG 518
+ E L+ + + +R I
Sbjct: 171 ICELLLSDYSRRGFFDGIGIRLPTICI 197
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 44.3 bits (105), Expect = 7e-05
Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 45/155 (29%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
K I + G+S +G L+ + + G +V AV R ++++ L+ VKK DV
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLK-------VKKADV 55
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
+ ++V +V + D +++ + + + IK L
Sbjct: 56 SSLDEVCEVCKGA-------DAVISAFNPGW----------NNPDIYDETIKVYL----T 94
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869
I+ + AGV F + G
Sbjct: 95 IIDGV-------------KKAGVNRF----LMVGG 112
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 44.4 bits (106), Expect = 1e-04
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 33/124 (26%)
Query: 408 YEIDMIIHAAA-------------FVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHY 454
++ +I++ AA F +NV+ T L+E
Sbjct: 97 RDVQVIVNFAAESHVDRSIENPIPFY----------DTNVIGTVTLLELVKKYPHIKLVQ 146
Query: 455 VSTDSIYPSTSEN--FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVSIV 511
VSTD +Y S + F E+ +A S Y SK ++ + L + LPV +
Sbjct: 147 VSTDEVYGSLGKTGRFTEETPLA-------PNSPYSSSKASADMIALAYYKTYQLPVIVT 199
Query: 512 RCGN 515
RC N
Sbjct: 200 RCSN 203
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 44.1 bits (105), Expect = 1e-04
Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 409 EIDMIIHAAAFVNLILPYNA--LYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE 466
+++ I H A + ++ + +N +K L+ + +I F Y S+ + Y +
Sbjct: 68 DVEAIFHEGACSS-TTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTS 125
Query: 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSE-YLVLNAGQMGLPVSIVR 512
+F E ++ + YG SK + + Y+ + + R
Sbjct: 126 DFIES------REYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFR 166
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 44.3 bits (105), Expect = 1e-04
Identities = 34/214 (15%), Positives = 68/214 (31%), Gaps = 63/214 (29%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
VL+ GV G++G HL ++ L + ++ L+ +
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYG--------------------------LDIGS 35
Query: 381 D---------RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNAL-- 429
D V+ D+S + + + D+++ A I Y
Sbjct: 36 DAISRFLNHPHFHFVEGDIS------IHSEWIEYHVKKCDVVLPLVAIATPIE-YTRNPL 88
Query: 430 --YKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE--------NFQEDYTVADFDD 479
++ + +I + + + PSTSE F ED++
Sbjct: 89 RVFELDFEENLRIIRYCVKYRKRIIF--------PSTSEVYGMCSDKYFDEDHSNLIVGP 140
Query: 480 FMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVR 512
Y SK + + ++ G + GL ++ R
Sbjct: 141 VNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFR 174
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 44.2 bits (105), Expect = 1e-04
Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 409 EIDMIIHAAAFVNLILPYNA--LYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE 466
+++ I H A + ++ + +N +K L+ + +I F Y S+ + Y +
Sbjct: 115 DVEAIFHEGACSS-TTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTS 172
Query: 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSE-YLVLNAGQMGLPVSIVR 512
+F E ++ + +G SK + + Y+ + + R
Sbjct: 173 DFIES------REYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFR 213
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 43.7 bits (104), Expect = 2e-04
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 409 EIDMIIHAAAFVN----LILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST 464
++ ++ H A+ + P Y NV + ++L+ + ST +Y
Sbjct: 69 DVRLVYHLASHKSVPRSFKQPL--DYLDNVDSGRHLLALCTSVGVPKVVVGSTCEVYGQA 126
Query: 465 SEN-FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN-AGQMGLP-VSIVRCGN 515
ED ++ S Y SK+ E + P V IVR N
Sbjct: 127 DTLPTPEDSPLS-------PRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFN 173
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 42.7 bits (101), Expect = 2e-04
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+ V G++ + L+ +L G + VA+ R ++ L+ G+ + ++
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELR-----ERGASDIVVANLE--- 75
Query: 779 DVKKVVREVLAE-LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINV 823
E + ID +V AG T +K L + I
Sbjct: 76 -------EDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKT 114
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 43.7 bits (104), Expect = 2e-04
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 32/126 (25%)
Query: 405 SLSYEIDMIIHAAA-------------FVNLILPYNALYKSNVLATKNLIEFSFLNKIKS 451
+D I+H AA F ++NV T+ L++ + +
Sbjct: 72 RELRGVDAIVHFAAESHVDRSIAGASVFT----------ETNVQGTQTLLQCAVDAGVGR 121
Query: 452 FHYVSTDSIYPSTSEN-FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVS 509
+VST+ +Y S + E + S Y SK S+ + + GL V
Sbjct: 122 VVHVSTNQVYGSIDSGSWTESSPLE-------PNSPYAASKAGSDLVARAYHRTYGLDVR 174
Query: 510 IVRCGN 515
I RC N
Sbjct: 175 ITRCCN 180
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 42.3 bits (100), Expect = 2e-04
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
I + G++ G + V G +V + R RL + + +V DV
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-----PRPAHVV-VGDVLQAA 59
Query: 779 DVKKVVREVLAELGHIDILVNNAG 802
DV K V G D ++ G
Sbjct: 60 DVDKTVA------GQ-DAVIVLLG 76
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 42.9 bits (102), Expect = 3e-04
Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 38/155 (24%)
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAA-------------FVNLILPYN 427
DR+ LV D++ + + L+ + D I+H AA F+
Sbjct: 54 DRVELVVGDIA-------DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFI------- 99
Query: 428 ALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTT--- 484
+N + T L+E + I+ FH+VSTD +Y + T
Sbjct: 100 ---HTNFIGTYTLLEAARKYDIR-FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY 155
Query: 485 ---SGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGN 515
S Y +K S+ +V + G+ +I C N
Sbjct: 156 NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSN 190
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier
protein FA structural genomics, PSI, protein structure
initiative; NMR {Nostoc SP} PDB: 2afe_A
Length = 88
Score = 39.3 bits (92), Expect = 3e-04
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 221 TLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
+D +E+F +S A + + ++ + L L+ +F +PT+ ++A L
Sbjct: 33 DIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRL 83
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Length = 99
Score = 39.3 bits (92), Expect = 5e-04
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 222 LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
+ +D+ F ++G S+ + +N+ +LNL L+ +PT+ E++ +
Sbjct: 41 IAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYI 90
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 41.5 bits (97), Expect = 5e-04
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
I V G++ G +V + G +V+AV R + V L
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAA--------DRLGATVATLVKEPLV 54
Query: 779 DVKKVVREVLA 789
+ + V A
Sbjct: 55 LTEADLDSVDA 65
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 40.8 bits (96), Expect = 9e-04
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
IF+ GS+ +G+ L+K L T ++ A AR+++++ ++ DV
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYN--------NVKAVHFDVDWTP 54
Query: 779 DVKKVVREVLAELGHIDILVNNAG 802
+ E+ +L +D ++N +G
Sbjct: 55 E------EMAKQLHGMDAIINVSG 72
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 41.4 bits (98), Expect = 0.001
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 25/104 (24%)
Query: 407 SYEIDMIIHAAAFVNLILPYNAL----------YKSNVLATKNLIEFSFLNKIKSFHYVS 456
D+II+AAA + YK N A ++++ + H S
Sbjct: 55 KKRPDVIINAAA-------MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHI-S 106
Query: 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN 500
TD ++ N++E +D + YG SK++ E L
Sbjct: 107 TDYVFDGEKGNYKE-------EDIPNPINYYGLSKLLGETFALQ 143
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 41.0 bits (97), Expect = 0.001
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 28/123 (22%)
Query: 409 EIDMIIHAAAF------VNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY- 461
+ + H AA Y++NVLAT L+E + + ST ++Y
Sbjct: 63 GAEEVWHIAANPDVRIGAENPDEI---YRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYG 119
Query: 462 -----PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGN 515
P+ EDY S YG SK+ E L+ + + I R N
Sbjct: 120 EAKVIPTP-----EDYPTH-------PISLYGASKLACEALIESYCHTFDMQAWIYRFAN 167
Query: 516 IGG 518
+ G
Sbjct: 168 VIG 170
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 41.0 bits (97), Expect = 0.001
Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 37/154 (24%)
Query: 378 NYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAF------VNLILPYNALYK 431
L DL D + D++ H AA + + +
Sbjct: 40 FVNPSAELHVRDLK---------DYSWGAGIKGDVVFHFAANPEVRLSTTEPIVH---FN 87
Query: 432 SNVLATKNLIEFSFLNKIKSFHYVSTDSIY------PSTSENFQEDYTVADFDDFMTTTS 485
NV+AT N++E++ +++ + S+ ++Y P+ E+ S
Sbjct: 88 ENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTP-----EEEPYK-------PIS 135
Query: 486 GYGQSKIVSEYLVLNAGQM-GLPVSIVRCGNIGG 518
YG +K E + ++ G+ VR N+ G
Sbjct: 136 VYGAAKAAGEVMCATYARLFGVRCLAVRYANVVG 169
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 40.3 bits (94), Expect = 0.001
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
I + G++ G +++++ G +V A+ R ++ I + + D+
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------HKDINILQKDIF 52
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 40.7 bits (96), Expect = 0.002
Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 45/205 (21%)
Query: 322 VLLTGVTGYLGIHLLQKFL--------VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMS 373
L+TGV G++G +LL+ L +D T L S
Sbjct: 30 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGH----------------QRNLDEVRS 73
Query: 374 LDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVN----LILPYNAL 429
L ++ D+ N D+ + +D ++H AA + + P +
Sbjct: 74 LVSEKQWSNFKFIQGDIR-------NLDDCNNACAGVDYVLHQAALGSVPRSINDPITS- 125
Query: 430 YKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY-PSTSENFQEDYTVADFDDFMTTTSGYG 488
+N+ N++ + K++SF Y ++ S Y ED S Y
Sbjct: 126 NATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGK-------PLSPYA 178
Query: 489 QSKIVSEYLVLNAGQM-GLPVSIVR 512
+K V+E + G +R
Sbjct: 179 VTKYVNELYADVFSRCYGFSTIGLR 203
Score = 31.9 bits (73), Expect = 1.1
Identities = 27/133 (20%), Positives = 42/133 (31%), Gaps = 34/133 (25%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-----RLENLKTSLQNAPGSIIVK 770
KV +TG + IG L++ L+ L KVV +D NL
Sbjct: 27 PKVWLITGVAGFIGSNLLETLLKLDQKVVG----LDNFATGHQRNLDEVRSLVSEKQWSN 82
Query: 771 ----KLDVTIENDVKKVVREVLAELGHIDILVNNA---GVMYFTLMEKYKLEEWNAMINV 823
+ D+ +D V D +++ A V + +
Sbjct: 83 FKFIQGDIRNLDDCNNACAGV-------DYVLHQAALGSV-------PRSINDPITSNAT 128
Query: 824 NIKGVLHCIGNIL 836
NI G L N+L
Sbjct: 129 NIDGFL----NML 137
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 40.2 bits (95), Expect = 0.002
Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 41/127 (32%)
Query: 409 EIDMIIHAAA-------------FVNLILPYNALYKSNVLATKNLIEFSFLNKIKS-FHY 454
++D ++H AA F+ SNV+ T L+E + F +
Sbjct: 75 KVDGVVHLAAESHVDRSISSPEIFL----------HSNVIGTYTLLESIRRENPEVRFVH 124
Query: 455 VSTDSIYPSTSENFQEDYTVADFDDFMTTT-----SGYGQSKIVSEYLVLNAGQM-GLPV 508
VSTD +Y + F S Y +K S+ LVL + L
Sbjct: 125 VSTDEVYGDILK-----------GSFTENDRLMPSSPYSATKAASDMLVLGWTRTYNLNA 173
Query: 509 SIVRCGN 515
SI RC N
Sbjct: 174 SITRCTN 180
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 39.0 bits (91), Expect = 0.004
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 719 IFVTGSSSGIGEQLVKDLV-TLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
+ + G+ I ++ L K AR+ ++ P + + DV
Sbjct: 26 VLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP------YPTNSQIIMGDVLNH 79
Query: 778 NDVKKVVREVLAELGHIDILVNNAG 802
+K+ ++ DI+ N
Sbjct: 80 AALKQAMQGQ-------DIVYANLT 97
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 38.8 bits (91), Expect = 0.006
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 721 VTGSSSGIGE---QLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI- 776
S+SG+G+ Q+ LG + + V R ++ L L++ G+ + I
Sbjct: 173 QNASNSGVGQAVIQIAA---ALGLRTINVVRDRPDIQKLSDRLKSL-GA------EHVIT 222
Query: 777 --ENDVKKVVREVLAELGHIDILVNNAG 802
E ++ ++ + +N G
Sbjct: 223 EEELRRPEMKNF-FKDMPQPRLALNCVG 249
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 38.4 bits (90), Expect = 0.009
Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 32/206 (15%)
Query: 314 SNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVR-----ETPNKTLLQRLEDIML 368
++L+ +L+TG G++G +L F + V + R +
Sbjct: 5 DDELENQTILITGGAGFVGSNLAFHFQ---ENHPKAKVVVLDKFRSNTLFSNNRPSSLG- 60
Query: 369 KYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNA 428
+L + +I +D++ + + + D + H AA + + N
Sbjct: 61 ---HFKNLIGFKGEVI--AADINNPLDLRRLEK------LHFDYLFHQAAVSDTTM-LNQ 108
Query: 429 LY--KSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSG 486
K+N A NL+E + K K Y S+ +Y +T + +
Sbjct: 109 ELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKAPNVV-------GKNESPENV 160
Query: 487 YGQSKIVSEYLVLNAGQMGLPVSIVR 512
YG SK+ + VL+ +R
Sbjct: 161 YGFSKLCMDEFVLSHSN-DNVQVGLR 185
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 37.9 bits (88), Expect = 0.009
Identities = 26/157 (16%), Positives = 45/157 (28%), Gaps = 26/157 (16%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAK--VVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
+ VTG+S G+ + K L K + R E + G V D+
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-------GGEADVFIGDI 57
Query: 775 TIENDVKKVVREV----------LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINV- 823
T + + + + D F + + +W N
Sbjct: 58 TDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117
Query: 824 ---NIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV 857
+ GV H ++ + P H LN N +
Sbjct: 118 DAAKVAGVKHI---VVVGSMGGTNPDHPLNKLGNGNI 151
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 38.1 bits (89), Expect = 0.009
Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 36/204 (17%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG G++G HL K ++D + +D N +T
Sbjct: 29 RILITGGAGFVGSHLTDKLMMD-GHEVTV------------------------VD-NFFT 62
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAA----FVNLILPYNALYKSNVLA 436
R V+ + E L N D L E+D I H A+ + P L K+N +
Sbjct: 63 GRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTL-KTNTIG 121
Query: 437 TKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQ-EDYTVADFDDFMTTTSGYGQSKIVSE 495
T N++ + + ST +Y + Q EDY + + + Y + K V+E
Sbjct: 122 TLNMLGLAKRVGAR-LLLASTSEVYGDPEVHPQSEDYWGH--VNPIGPRACYDEGKRVAE 178
Query: 496 YLVLN-AGQMGLPVSIVRCGNIGG 518
+ Q G+ V + R N G
Sbjct: 179 TMCYAYMKQEGVEVRVARIFNTFG 202
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 38.3 bits (90), Expect = 0.010
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 21/111 (18%)
Query: 395 LGLKNQDEYVSL--SYEIDMIIHAAAFV-----NLILPYNALYKSNVLATKNLIEFSFLN 447
L L + S ID + AAA V N P + +Y+ N++ N+I + N
Sbjct: 39 LNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQ-NMMIESNIIHAAHQN 97
Query: 448 KIKSFHYVSTDSIYPSTSEN-FQEDYTVADFDDFMT-----TTSGYGQSKI 492
+ ++ + IYP ++ E + T Y +KI
Sbjct: 98 DVNKLLFLGSSCIYPKLAKQPMAESE-------LLQGTLEPTNEPYAIAKI 141
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 38.0 bits (89), Expect = 0.011
Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 25/95 (26%)
Query: 721 VTGSSSGIGE---QLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL--DVT 775
+T +S + + L K+ G + + RR +++ ++K +
Sbjct: 170 MTAGASQLCKLIIGLAKEE---GFRPIVTVRRDEQIA-------------LLKDIGAAHV 213
Query: 776 I---ENDVKKVVREVLAELGHIDILVNNAGVMYFT 807
+ D + +REV+ I ++ +
Sbjct: 214 LNEKAPDFEATLREVMKAEQ-PRIFLDAVTGPLAS 247
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 38.4 bits (89), Expect = 0.014
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 711 GNTLANKVIFVTGSSSG-IGEQLVKDLVTLGAKVVAVARRIDR 752
G T +K + +TG+ G IG ++++ L+ GAKVV R +
Sbjct: 670 GVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK 712
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 37.5 bits (88), Expect = 0.015
Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 20/121 (16%)
Query: 408 YEIDMIIHAAAF------VNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTD-SI 460
+ + H AA V + ++ N+L NL+E ++ + ST +I
Sbjct: 65 FRPTHVSHQAAQASVKVSVEDPVLD---FEVNLLGGLNLLEACRQYGVEKLVFASTGGAI 121
Query: 461 YPSTSENF--QEDYTVADFDDFMTTTSGYGQSKIVSE-YLVLNAGQMGLPVSIVRCGNIG 517
Y E +E + S Y SK E YL + GL +R GN+
Sbjct: 122 YGEVPEGERAEETWPPR-------PKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVY 174
Query: 518 G 518
G
Sbjct: 175 G 175
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 38.4 bits (89), Expect = 0.015
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 711 GNTLANKVIFVTGSSSG-IGEQLVKDLVTLGAKVVAVARRIDR 752
G T K +TG+ +G IG ++++ L++ GAKV+ R R
Sbjct: 647 GLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSR 689
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 37.6 bits (87), Expect = 0.019
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
+ + T ++S +G+ L + + G K+V + R+ ++ + LK Q A
Sbjct: 171 GHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA--QGA---------VH 219
Query: 775 TI---ENDVKKVVREVLAELGHIDIL 797
+ + E L G
Sbjct: 220 VCNAASPTFMQDLTEALVSTGATIAF 245
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 37.2 bits (87), Expect = 0.019
Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 47/206 (22%)
Query: 322 VLLTGVTGYLGIHLLQKFL--------VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMS 373
L+TGV G++G +LL+K L +D T L +
Sbjct: 28 WLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGH----------------QYNLDEVKT 71
Query: 374 LDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPY-----NA 428
L R ++ D+ + + +D ++H AA ++ P
Sbjct: 72 LVSTEQWSRFCFIEGDIR-------DLTTCEQVMKGVDHVLHQAALGSV--PRSIVDPIT 122
Query: 429 LYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVADFDDFMTTTSGY 487
+N+ N++ + +++SF Y ++ S Y E+ S Y
Sbjct: 123 TNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGN-------PLSPY 175
Query: 488 GQSKIVSEYLVLN-AGQMGLPVSIVR 512
+K V+E A G +R
Sbjct: 176 AVTKYVNEIYAQVYARTYGFKTIGLR 201
Score = 35.7 bits (83), Expect = 0.057
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 30/133 (22%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-------ARRIDRLENLKTSLQNAPGS 766
+ K +TG + IG L++ L+ L V+ + +D ++ L ++ Q +
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFC 82
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNA---GVMYFTLMEKYKLEEWNAMINV 823
I + D+ ++V++ V D +++ A V + +
Sbjct: 83 FI--EGDIRDLTTCEQVMKGV-------DHVLHQAALGSV-------PRSIVDPITTNAT 126
Query: 824 NIKGVLHCIGNIL 836
NI G L NIL
Sbjct: 127 NITGFL----NIL 135
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2
PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 37.1 bits (87), Expect = 0.026
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 39/136 (28%)
Query: 408 YEIDMIIHAAA-------------FVNLILPYNALYKSNVLATKNLIE-----FSFLNKI 449
Y+ D ++H AA F+ ++N++ T L+E +S L +
Sbjct: 72 YQPDAVMHLAAESHVDRSITGPAAFI----------ETNIVGTYALLEVARKYWSALGED 121
Query: 450 KS----FHYVSTDSIYPSTSENFQEDYTVADFDDFMTTT-----SGYGQSKIVSEYLVLN 500
K FH++STD +Y E F TT S Y SK S++LV
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHP-DEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 501 AGQM-GLPVSIVRCGN 515
+ GLP + C N
Sbjct: 181 WRRTYGLPTIVTNCSN 196
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase,
polyketide synthase, phosphopantetheine, transferase,
hydrolase; 2.00A {Streptomyces SP}
Length = 319
Score = 36.0 bits (83), Expect = 0.047
Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 219 LYTLDKDENFFEIGGHSLTAALCISKMNEELSL---NLSIKDLFAHPTVQEMAALL 271
++ + ++G +L ++ + L + +L + AA L
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSNAAQSDYFGELFLQAMRTGELAQAQQLMAGAAQL 56
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 36.0 bits (84), Expect = 0.048
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 20/77 (25%)
Query: 320 GNVLLTGVTGYLGIHLLQKFL-----VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSL 374
G V +TG TG+LG +++ L V T +R P +
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLENGYSV--NTT----IRADPER---------KRDVSFLT 46
Query: 375 DLNNYTDRLILVKSDLS 391
+L +++L +DLS
Sbjct: 47 NLPGASEKLHFFNADLS 63
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 36.0 bits (84), Expect = 0.049
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 24/94 (25%)
Query: 721 VTGSSSGIGE---QLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL--DVT 775
V G++ GIG Q+ K +GAKV+AV R E VK + D+
Sbjct: 165 VLGAAGGIGTAAIQIAK---GMGAKVIAVVNRTAATE-------------FVKSVGADIV 208
Query: 776 I--ENDVKKVVREVLAELGHIDILVNNAGVMYFT 807
+ E K VRE G +D++V+ G F
Sbjct: 209 LPLEEGWAKAVREATGGAG-VDMVVDPIGGPAFD 241
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 35.7 bits (83), Expect = 0.050
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 714 LANKVIFVTGSSS------GIGEQLVKDLVTLGAKVVA--VARRIDRLENLKTSLQNAPG 765
LA K I +TG S GI + + + GA++ V + DR+E L
Sbjct: 24 LAGKKILITGLLSNKSIAYGIAKAMHR----EGAELAFTYVGQFKDRVEKLCAEF----N 75
Query: 766 SIIVKKLDVTIENDVKKVVREVLAELGHIDILV 798
V DV + ++K + E+ +D +V
Sbjct: 76 PAAVLPCDVISDQEIKDLFVELGKVWDGLDAIV 108
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 36.2 bits (84), Expect = 0.053
Identities = 60/311 (19%), Positives = 103/311 (33%), Gaps = 63/311 (20%)
Query: 311 QLNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKY 370
Q + VL+ GV G++G HL ++ L +
Sbjct: 307 QPACTARRRTRVLILGVNGFIGNHLTERLLREDH-------------------------- 340
Query: 371 HMSLDLNNYTDRL--ILVKSDLSLEMLGLKNQDEYVSLSYEI---DMIIHAAAFVNLILP 425
+ L+ +D + L + E+ + Y + D+++ A P
Sbjct: 341 YEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEW--IEYHVKKCDVVLPLVAIAT---P 395
Query: 426 YNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDS---IYPSTSE--------NFQEDYTV 474
Y N L E F ++ Y I+PSTSE F ED++
Sbjct: 396 --IEYTRNPLRV---FELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSN 450
Query: 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGN-IGGSLEFKNWNLVDLNL 532
Y SK + + ++ G + GL ++ R N +G L+ N + +
Sbjct: 451 LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSR 510
Query: 533 YILKAITRLGYAPDIDWY------LEFTPVDFLTKSLVQLTTNVNNA--NKIYNFIN-TN 583
I + I L I FT + ++L ++ N N +I N N N
Sbjct: 511 AITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPEN 570
Query: 584 PIHIKTLVSVL 594
I+ L +L
Sbjct: 571 EASIEELGEML 581
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 35.7 bits (83), Expect = 0.056
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 19/86 (22%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
N+ + VTG++ +G + K+ V R R + +++++
Sbjct: 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK--------------FEQVNLL 47
Query: 776 IENDVKKVVREVLAELGHIDILVNNA 801
N V ++ + ++V+ A
Sbjct: 48 DSNAVHHIIHDF-----QPHVIVHCA 68
Score = 34.9 bits (81), Expect = 0.11
Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 60/201 (29%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
VL+TG TG LG + K Q ++L +
Sbjct: 5 VLVTGATGLLG-RAVHKEFQQNNWHAVGCGFRRARPKFEQ------------VNLLDSNA 51
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNAL----------YK 431
++ ++ +I+H AA +
Sbjct: 52 VHHIIHD-------------------FQPHVIVHCAA-------ERRPDVVENQPDAASQ 85
Query: 432 SNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSK 491
NV A+ NL + + + S+D ++ T+ ++E+ A + YG++K
Sbjct: 86 LNVDASGNLAKEAAAVGAFLIYI-SSDYVFDGTNPPYREEDIPA-------PLNLYGKTK 137
Query: 492 IVSEYLVLNAGQMGLPVSIVR 512
+ E VL ++R
Sbjct: 138 LDGEKAVLENNLGAA---VLR 155
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 35.6 bits (83), Expect = 0.057
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 714 LANKVIFVTGSSS------GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI 767
L+ K V G ++ I +L + GA+V A++ + +RL L A G
Sbjct: 6 LSGKKALVMGVTNQRSLGFAIAAKLKE----AGAEV-ALSYQAERLRPEAEKLAEALGGA 60
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILV 798
++ + DVT + ++ + V G +D LV
Sbjct: 61 LLFRADVTQDEELDALFAGVKEAFGGLDYLV 91
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 35.6 bits (83), Expect = 0.061
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 27/116 (23%)
Query: 407 SYEIDMIIHAAAFVNLILPYNAL----------YKSNVLATKNLIEFSFLNKIKSFHYVS 456
+ +++I+ AA + A+ YK N + KNL ++ + S
Sbjct: 61 EKKPNVVINCAA-------HTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQI-S 112
Query: 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVR 512
TD ++ ++ E T D + S YG++K+ E V IVR
Sbjct: 113 TDYVFDGEAK---EPITE---FDEVNPQSAYGKTKLEGENFVKALNPKYY---IVR 159
Score = 31.0 bits (71), Expect = 1.6
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 26/83 (31%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
I +TG++ +G ++ K L +V+ + LD+T
Sbjct: 15 ILITGANGQLGREIQKQLKGKNVEVIPTDV---------------------QDLDITNVL 53
Query: 779 DVKKVVREVLAELGHIDILVNNA 801
V K E ++++N A
Sbjct: 54 AVNKFFNEK-----KPNVVINCA 71
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 35.4 bits (81), Expect = 0.062
Identities = 8/70 (11%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 719 IFVTGSSSGIGEQLVKDLVT-LGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
I + G++ I + L L+T + R++ + + + ++ +
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPE--IIDHERVTVI-EGSFQNP 64
Query: 778 NDVKKVVREV 787
+++ V
Sbjct: 65 GXLEQAVTNA 74
Score = 30.4 bits (68), Expect = 2.5
Identities = 21/225 (9%), Positives = 62/225 (27%), Gaps = 46/225 (20%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+ + G G + L L T + R+ + + ++
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDH--------------- 51
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNL 440
+R+ +++ N +++ A + ++
Sbjct: 52 ERVTVIEGSFQ-------NPGXLEQAVTNAEVVFVGAME-------------SGSDMASI 91
Query: 441 IEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN 500
++ I+ VS + ++ F Y Q + + ++
Sbjct: 92 VKALSRXNIRRVIGVSMAGLSGEFPVALEK-------WTFDNLPISYVQGERQARNVLR- 143
Query: 501 AGQMGLPVSIVRCGNIGGSLEFKNWNLV-DLNLYILKAITRLGYA 544
+ L +I+R + E ++ L+ + + ++R
Sbjct: 144 --ESNLNYTILRLTWLYNDPEXTDYELIPEGAQFNDAQVSREAVV 186
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 35.3 bits (82), Expect = 0.075
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 696 QGISISNAGTVNIVFGNTLANKVIFVTGSSS------GIGEQLVKDLVTLGAKVVAVARR 749
+ G ++ G + K + G ++ GI + + GA+V A+
Sbjct: 10 GTLEAQTQGPGSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCA----QGAEV-ALTYL 64
Query: 750 IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILV 798
+ + L + G + DV+ V + + + E G +D +V
Sbjct: 65 SETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGSLDFVV 113
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 35.6 bits (83), Expect = 0.076
Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 53/196 (27%)
Query: 320 GNVLLTGVTGYLGIH----LLQK----FLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYH 371
VL+TG GY+G H LL+ ++D F P L+R++++ +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLP--ESLRRVQELTGR-- 58
Query: 372 MSLDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAF------VNLILP 425
+ + D+ L+ L+ + Y +IH A V L
Sbjct: 59 ----------SVEFEEMDI-LDQGALQR----LFKKYSFMAVIHFAGLKAVGESVQKPLD 103
Query: 426 YNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY------PSTSENFQEDYTVADFDD 479
Y Y+ N+ T L+E + +K+ + S+ ++Y P E +
Sbjct: 104 Y---YRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLD-----EAHPTG---- 151
Query: 480 FMTTTSGYGQSKIVSE 495
T+ YG+SK E
Sbjct: 152 --GCTNPYGKSKFFIE 165
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 36.0 bits (83), Expect = 0.081
Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 20/172 (11%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAK-VVAVARR---IDRLENLKTSLQNAPGSIIVK 770
+K +TG G G QL + L GA+ +V +R + ++V
Sbjct: 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVS 1942
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+ + + + ++ E G + + N A V+ ++E E + + G +
Sbjct: 1943 TSNASSLDGARSLITEATQL-GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTAN 2001
Query: 831 CIGNILPSMLH--SRRPGHILN----ISSNAGVRPFAGLAVYTGTKYFIEGI 876
L +R L+ SS + R AG A Y +E I
Sbjct: 2002 ---------LDRVTREACPELDYFVIFSSVSCGRGNAGQANYGFANSAMERI 2044
Score = 30.6 bits (69), Expect = 3.7
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 221 TLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAH--PTVQEMAALL 271
+++ D ++G SL + E L LS++++ +QE+++
Sbjct: 2143 SINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQLSLRKLQELSSKT 2195
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 34.9 bits (81), Expect = 0.092
Identities = 9/41 (21%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 719 IFVTGSSSGIGEQLVKDLVTL--GAKVVAVARRIDRLENLK 757
I VTG++ +G +++ L+ ++++A+ R +++ L
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA 43
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 34.9 bits (81), Expect = 0.10
Identities = 9/42 (21%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTL--GAKVVAVARRIDRLENLK 757
+I +TG++ +G +++ L+ +++VA+ R + + L
Sbjct: 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA 42
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 34.8 bits (81), Expect = 0.11
Identities = 26/116 (22%), Positives = 35/116 (30%), Gaps = 27/116 (23%)
Query: 407 SYEIDMIIHAAAFVNLILPYNAL----------YKSNVLATKNLIEFSFLNKIKSFHYVS 456
+IIH AA Y + Y N + +N+ S L K + S
Sbjct: 54 EIRPHIIIHCAA-------YTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYI-S 105
Query: 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVR 512
TD ++ E Y + YG SK E V IVR
Sbjct: 106 TDYVFQGDRP---EGYDE---FHNPAPINIYGASKYAGEQFVKELHNKYF---IVR 152
Score = 31.7 bits (73), Expect = 0.96
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 26/83 (31%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+ +TG++ +G+QL ++L + + K LD+T +
Sbjct: 8 VIITGANGQLGKQLQEELNPEEYDIYPFDK---------------------KLLDITNIS 46
Query: 779 DVKKVVREVLAELGHIDILVNNA 801
V++VV+E+ I+++ A
Sbjct: 47 QVQQVVQEI-----RPHIIIHCA 64
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 34.8 bits (80), Expect = 0.12
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 708 IVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI 767
++ + K +FVTG + G L L T+GA V + + +L + +
Sbjct: 1 MINNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETA-RVADGM 59
Query: 768 IVKKLDVTIENDVKKVVREV 787
+ D+ +N + + +RE
Sbjct: 60 QSEIGDIRDQNKLLESIREF 79
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 34.5 bits (80), Expect = 0.13
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 714 LANKVIFVTGSSS------GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI 767
L+ K I VTG +S GI + + + GA++ A + D+L+ GS
Sbjct: 7 LSGKRILVTGVASKLSIAYGIAQAMHR----EGAEL-AFTYQNDKLKGRVEEFAAQLGSD 61
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILV 798
IV + DV + + + E+ D V
Sbjct: 62 IVLQCDVAEDASIDTMFAELGKVWPKFDGFV 92
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 34.7 bits (80), Expect = 0.16
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR 752
+ +TGS +G L L T G +V+ + R+ +
Sbjct: 150 VAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK 183
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 34.1 bits (79), Expect = 0.16
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 714 LANKVIFVTGSSS------GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI 767
L K + G ++ GI + GA + A + LE + S
Sbjct: 4 LKGKKGLIVGVANNKSIAYGIAQSCFN----QGATL-AFTYLNESLEKRVRPIAQELNSP 58
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILV 798
V +LDV+ E K + V +LG +D +V
Sbjct: 59 YVYELDVSKEEHFKSLYNSVKKDLGSLDFIV 89
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 34.4 bits (79), Expect = 0.17
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 16/101 (15%)
Query: 718 VIFVTGSSSGIGE---QLVKDLVTLGAKVVAVARRIDRLENLKT---------SLQNAPG 765
+ + G+S G+G Q GA + V + E + + +
Sbjct: 231 NVLIWGASGGLGSYATQFAL---AGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRF 287
Query: 766 SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF 806
D K +RE+ IDI+ + G F
Sbjct: 288 WKDENTQDPKEWKRFGKRIRELTGGED-IDIVFEHPGRETF 327
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 34.1 bits (79), Expect = 0.17
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 714 LANKVIFVTGSSS------GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI 767
L K + G ++ GI + + GA++ A + D L+ L G+
Sbjct: 29 LQGKRGLILGVANNRSIAWGIAKAARE----AGAEL-AFTYQGDALKKRVEPLAEELGAF 83
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILV 798
+ DV + V + + G +D LV
Sbjct: 84 VAGHCDVADAASIDAVFETLEKKWGKLDFLV 114
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 34.2 bits (79), Expect = 0.19
Identities = 5/40 (12%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLK 757
I +TG++ +G + + R ++++ +
Sbjct: 3 IMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW 42
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 33.7 bits (78), Expect = 0.20
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 714 LANKVIFVTGSSS------GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI 767
L K I +TG S GI + + GA++ A DR ++ T GS
Sbjct: 12 LDGKRILLTGLLSNRSIAYGIAKACKR----EGAEL-AFTYVGDRFKDRITEFAAEFGSE 66
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILV 798
+V DV + + + + +D LV
Sbjct: 67 LVFPCDVADDAQIDALFASLKTHWDSLDGLV 97
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 33.7 bits (78), Expect = 0.21
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 714 LANKVIFVTGSSS------GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI 767
L K +TG ++ GI + + GA++ A +LE + GS
Sbjct: 19 LEGKRALITGVANERSIAYGIAKSFHR----EGAQL-AFTYATPKLEKRVREIAKGFGSD 73
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILV 798
+V K DV+++ D+K + + + G +DI+V
Sbjct: 74 LVVKCDVSLDEDIKNLKKFLEENWGSLDIIV 104
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 34.1 bits (79), Expect = 0.21
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 21/75 (28%)
Query: 322 VLLTGVTGYLGIHLLQKFL-----VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDL 376
V +TG +G++G L+ + L V + T VR+ N ++ L LDL
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTV--RAT----VRDPTNVKKVKHL----------LDL 51
Query: 377 NNYTDRLILVKSDLS 391
L L K+DL+
Sbjct: 52 PKAETHLTLWKADLA 66
Score = 33.4 bits (77), Expect = 0.33
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLK--TSLQNAPGSIIVKKLD 773
++ + VTG+S IG LV L+ G V A R ++ +K L A + + K D
Sbjct: 5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKAD 64
Query: 774 VTIENDVKKVVR 785
+ E + ++
Sbjct: 65 LADEGSFDEAIK 76
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 34.1 bits (79), Expect = 0.21
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 21/111 (18%)
Query: 408 YEIDMIIHAAAF---VNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY--P 462
++ ++H+AA + +NV + N+ + + +K T Y P
Sbjct: 87 FKPTHVVHSAAAYKDPDDWAED---AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRP 143
Query: 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSE-YLVLNAGQMGLPVSIVR 512
D + YG SK E +L+++ +PV +R
Sbjct: 144 --------ATVPIPIDSPTAPFTSYGISKTAGEAFLMMS----DVPVVSLR 182
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 33.7 bits (78), Expect = 0.22
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 702 NAGTVNIVF--GNTLANKVIFVTGSSSGIGE---QLVKDLVTLGAKVVAVARRIDRLE 754
+ T + + + V ++ +G Q+ + +G +V+A A R ++L
Sbjct: 110 SFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVAR---AMGLRVLAAASRPEKLA 164
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 33.8 bits (78), Expect = 0.23
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS----IIVKK 771
++ VTG++ + +V+ L+ G KV AR +L NL+ +V+
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE- 69
Query: 772 LDVTIENDVKKVVREV 787
D+ + +V++
Sbjct: 70 -DMLKQGAYDEVIKGA 84
Score = 33.0 bits (76), Expect = 0.39
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 28/126 (22%)
Query: 322 VLLTGVTGYLGIHLLQKFL-----VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDL 376
VL+TG G++ H++++ L V + T R LQ+ D
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKV--RGT----ARSASKLANLQKR----------WDA 57
Query: 377 NNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLA 436
V D+ + Y + + H A+ V+ Y+ + +
Sbjct: 58 KYPGRFETAVVEDMLKQ-------GAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGG 110
Query: 437 TKNLIE 442
T N +
Sbjct: 111 TLNALR 116
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 33.8 bits (78), Expect = 0.23
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 714 LANKVIFVTGSSS------GIGEQLVKDLVTLGAKVV---AVARRIDRLENLKTSLQNAP 764
L NK + G ++ G+ + L + LGAK+V R LE L L N P
Sbjct: 30 LENKTYVIMGIANKRSIAFGVAKVLDQ----LGAKLVFTYRKERSRKELEKLLEQL-NQP 84
Query: 765 GSIIVKKLDVTIENDVKKVVREVLAELGHIDILV 798
+ + + +DV + +V ++ ++G+ID +
Sbjct: 85 EAHLYQ-IDVQSDEEVINGFEQIGKDVGNIDGVY 117
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 33.4 bits (77), Expect = 0.27
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLK 757
G + + VTG++ G+G V L G VVA + + LK
Sbjct: 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK 192
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 33.6 bits (77), Expect = 0.29
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK 770
K I V G++ G L++ +G V A + L + LQ P + +
Sbjct: 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEE--LQAIPNVTLFQ 57
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.30
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 18/37 (48%)
Query: 83 AIHKAGGGYLPLETS---YPPALLESVLDDAKPSIVI 116
A+ K L+ S Y D+ P++ I
Sbjct: 21 ALKK-------LQASLKLYAD--------DSAPALAI 42
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 33.1 bits (76), Expect = 0.32
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 13/106 (12%)
Query: 411 DMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQE 470
+++++ A S V +N + ++ +VS+ +Y E + +
Sbjct: 65 EILVYCVAASEYSDE--HYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLD 122
Query: 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNI 516
+ T G+ + +E L+ +I+R I
Sbjct: 123 EDTPPIA------KDFSGKRMLEAEALLA-----AYSSTILRFSGI 157
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution
structure, dynamics, ACP, biosynthetic protein; NMR
{Streptomyces rimosus} SCOP: a.28.1.1
Length = 95
Score = 31.0 bits (70), Expect = 0.34
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 225 DENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
D F +G SL + ++ + + L + T + + +
Sbjct: 31 DVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMT 77
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 32.9 bits (75), Expect = 0.35
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
NK +F+ G+S G L+K+++ G KV + RR + ++ + +D
Sbjct: 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA------YKNVNQEVVD 71
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGV 803
+D + D+ G
Sbjct: 72 FEKLDDYASAFQGH-------DVGFCCLGT 94
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 32.9 bits (76), Expect = 0.44
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 24/77 (31%)
Query: 718 VIFVTGSSSGIGE---QLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL-- 772
V+ V S IG QL + L +++AV R E + +L
Sbjct: 147 VLLVNACGSAIGHLFAQLSQ---ILNFRLIAVTRNNKHTE-------------ELLRLGA 190
Query: 773 DVTI---ENDVKKVVRE 786
I + + V E
Sbjct: 191 AYVIDTSTAPLYETVME 207
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 32.5 bits (75), Expect = 0.57
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 714 LANKVIFVTGSSS------GIGEQLVKDLVTLGAKVV---AVARRIDRLENLKTSLQNAP 764
L + I V G ++ GI L + GA+++ A R + L +L
Sbjct: 5 LEGRNIVVMGVANKRSIAWGIARSLHE----AGARLIFTYAGERLEKSVHELAGTLD--R 58
Query: 765 GSIIVKKLDVTIENDVKKVVREVLAELGHIDILV 798
I+ DVT + +++ + ++G I +
Sbjct: 59 NDSIILPCDVTNDAEIETCFASIKEQVGVIHGIA 92
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 32.4 bits (74), Expect = 0.66
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 20/78 (25%)
Query: 718 VIFVTGSSSGIGE---QLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL-- 772
G +S +G+ Q+ K L ++V R L+ + SL K+L
Sbjct: 170 WFIQNGGTSAVGKYASQIGK---LLNFNSISVIRDRPNLDEVVASL---------KELGA 217
Query: 773 DVTI---ENDVKKVVREV 787
I +N+ ++ +
Sbjct: 218 TQVITEDQNNSREFGPTI 235
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 32.4 bits (74), Expect = 0.80
Identities = 41/194 (21%), Positives = 68/194 (35%), Gaps = 54/194 (27%)
Query: 321 NVLLTGVTGYLGIH----LLQK----FLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHM 372
VL+TG GY+G H L++ + D + RLE +
Sbjct: 13 IVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDS--------VARLEVLTKH--- 61
Query: 373 SLDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAF------VNLILPY 426
+ + DL + GL+ V Y+ID +IH A + L Y
Sbjct: 62 ---------HIPFYEVDL-CDRKGLEK----VFKEYKIDSVIHFAGLKAVGESTQIPLRY 107
Query: 427 NALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQ-----EDYTVADFDDFM 481
Y +N+L T L+E + F + S+ ++Y + E+ +
Sbjct: 108 ---YHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLG------ 158
Query: 482 TTTSGYGQSKIVSE 495
T+ YG +K E
Sbjct: 159 -PTNPYGHTKYAIE 171
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 31.8 bits (73), Expect = 0.86
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 27/116 (23%)
Query: 407 SYEIDMIIHAAAFVNLILPYNAL----------YKSNVLATKNLIEFSFLNKIKSFHYVS 456
D+I++AAA + A+ N + + + + + HY S
Sbjct: 52 KLRPDVIVNAAA-------HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHY-S 103
Query: 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVR 512
TD ++P T + + D + + YG++K+ E + + L I R
Sbjct: 104 TDYVFPGTGDIP---WQE---TDATSPLNVYGKTKLAGEKALQDNCPKHL---IFR 150
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 32.1 bits (73), Expect = 0.88
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 718 VIFVTGSSSGIGE---QLVKDLVTLGAKVVAVARRIDRLENLK 757
++ + G+S G+G Q VK G VAV + ++
Sbjct: 223 IVLIWGASGGLGSYAIQFVK---NGGGIPVAVVSSAQKEAAVR 262
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 31.8 bits (73), Expect = 0.94
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 25/96 (26%)
Query: 719 IFVTGSSSGIGE---QLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL--D 773
+ V + SG+ Q+ K GA+V+A A D+L K L D
Sbjct: 170 VLVMAAGSGVSVAAIQIAK---LFGARVIATAGSEDKLR-------------RAKALGAD 213
Query: 774 VTI---ENDVKKVVREVLAELGHIDILVNNAGVMYF 806
T+ D K VR + G D +V++ G +YF
Sbjct: 214 ETVNYTHPDWPKEVRRLTGGKG-ADKVVDHTGALYF 248
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 31.8 bits (72), Expect = 0.98
Identities = 21/149 (14%), Positives = 39/149 (26%), Gaps = 49/149 (32%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-------------LENLK 757
T+ + V G +G + + LGAKV AR D +
Sbjct: 150 DFTIHGANVAVLGLG-RVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAA 208
Query: 758 TSLQNA---------------------PGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796
L++ + ++ D+ + + G +
Sbjct: 209 QELRDVDVCINTIPALVVTANVLAEMPSHTFVI---DLASKPGG--TDFRYAEKRGIKAL 263
Query: 797 LVNN---------AGVMYFTLMEKYKLEE 816
LV AG + ++ K E
Sbjct: 264 LVPGLPGIVAPKTAGRILADVLVKLLAEP 292
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 31.7 bits (72), Expect = 1.0
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 728 IGEQLVKDLVTLGAKVVAVARRIDRLENLKT 758
G + + LGA V AR L +
Sbjct: 168 TGMTIARTFAALGANVKVGARSSAHLARITE 198
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo,
polyketide synthase, PKS, biosynthetic protein; NMR
{Streptomyces roseofulvus} SCOP: a.28.1.1
Length = 83
Score = 29.0 bits (65), Expect = 1.4
Identities = 8/49 (16%), Positives = 21/49 (42%)
Query: 223 DKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
+ D F ++G SL + + + + L+ + + T +E+ +
Sbjct: 28 ELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEV 76
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 31.3 bits (72), Expect = 1.5
Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 63/197 (31%)
Query: 321 NVLLTGVTGYLGIH----LLQK----FLVDTKCTLFCPVRETPN--KTLLQRLEDIMLKY 370
VL+TG +GY+G H LLQ ++D C N +++L +E + K
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN----LC------NSKRSVLPVIERLGGK- 50
Query: 371 HMSLDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAF------VNLIL 424
V+ D+ + + + ID +IH A V L
Sbjct: 51 -----------HPTFVEGDI-RNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPL 94
Query: 425 PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY------PSTSENFQEDYTVADFD 478
Y Y +NV T LI +K+F + S+ ++Y P E +
Sbjct: 95 EY---YDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYV-----ESFPTG--- 143
Query: 479 DFMTTTSGYGQSKIVSE 495
T S YG+SK++ E
Sbjct: 144 ---TPQSPYGKSKLMVE 157
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 31.1 bits (71), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKT 758
G + + VTG+S G+G V L LG +V AV+ R LK+
Sbjct: 142 GIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS 189
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 31.0 bits (70), Expect = 1.6
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDI 366
+LL G TGY+G H+ + +D F VRE+ + ++ + +
Sbjct: 6 RILLIGATGYIGRHVAKA-SLDLGHPTFLLVRESTASSNSEKAQLL 50
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 30.7 bits (70), Expect = 2.0
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLK 757
+ VTG++ G+G V L G V A + + L+
Sbjct: 150 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR 191
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 30.9 bits (71), Expect = 2.0
Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 64/198 (32%)
Query: 320 GNVLLTGVTGYLGIH----LLQK----FLVDTKCTLFCPVRETPN--KTLLQRLEDIMLK 369
G +L+TG GY+G H LL + D N + + R+E I K
Sbjct: 6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADN----LV------NSKREAIARIEKITGK 55
Query: 370 YHMSLDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAF------VNLI 423
++D+ + L + ++ I IH AA V
Sbjct: 56 ------------TPAFHETDV-SDERALAR----IFDAHPITAAIHFAALKAVGESVAKP 98
Query: 424 LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY------PSTSENFQEDYTVADF 477
+ Y Y++N+ + +L+ +K + S+ ++Y P E + ++
Sbjct: 99 IEY---YRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPID-----ETFPLS-- 148
Query: 478 DDFMTTTSGYGQSKIVSE 495
T+ YGQ+K+++E
Sbjct: 149 -----ATNPYGQTKLMAE 161
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 30.7 bits (70), Expect = 2.2
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLK--TSLQNAPGSIIV 769
+ + K V G + + LVK L+ G V R D + + LQ G + +
Sbjct: 5 HPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQEL-GDLKI 63
Query: 770 KKLDVTIENDVKKVVR 785
+ D+T E + +
Sbjct: 64 FRADLTDELSFEAPIA 79
Score = 30.3 bits (69), Expect = 3.2
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 322 VLLTGVTGYLGIHLLQKFL 340
+ G TG++ L++ L
Sbjct: 12 ACVVGGTGFVASLLVKLLL 30
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier
protein, solution STR antibiotic biosynthesis; NMR
{Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A
2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A*
2kgd_A* 2kge_A*
Length = 86
Score = 28.7 bits (64), Expect = 2.5
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 225 DENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
D F +IG SL +++ +++ T +E+ L+
Sbjct: 32 DLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLI 78
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 30.3 bits (68), Expect = 2.7
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKT 358
+L+ G TGY+G H+++ + + R +KT
Sbjct: 13 KILIFGGTGYIGNHMVKG-SLKLGHPTYVFTRPNSSKT 49
>2qoj_Z Intron-encoded DNA endonuclease I-ANII; laglidadg homing
endonuclease, hydrolase, intron homing, mitochondrion,
mRNA processing, mRNA splicing; 2.40A {Emericella
nidulans} PDB: 1p8k_Z 3eh8_A 3uvf_A
Length = 254
Score = 30.3 bits (68), Expect = 2.9
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 567 TTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQIL 626
T+V + I F+ P+ + K + Y W +L K I+I
Sbjct: 203 VTSVRSVENIIKFLQNAPVKLLG-----------NKKLQYLLWLKQLRKISRYSEKIKIP 251
Query: 627 RN 628
N
Sbjct: 252 SN 253
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 30.4 bits (68), Expect = 3.0
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKT 358
G VL+ G TG++G + +D + R P
Sbjct: 10 KGRVLIAGATGFIGQFVA-TASLDAHRPTYILARPGPRSP 48
>2ab5_A MRNA maturase; laglidadg endonuclease, group I intron splicing, RNA
binding, protein binding; 2.20A {Saccharomyces
cerevisiae}
Length = 269
Score = 29.2 bits (65), Expect = 6.2
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 11/62 (17%)
Query: 567 TTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQIL 626
T ++N+ + FIN NPI + K + Y + L +I
Sbjct: 218 TKSINDIKNVVMFINNNPIKLLG-----------YKKLQYLLFLKDLRTITKYNNYFKIP 266
Query: 627 RN 628
Sbjct: 267 SK 268
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 29.1 bits (65), Expect = 6.8
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKT 358
+L+ G TG +G H++ + + VR+T
Sbjct: 4 KILILGPTGAIGRHIV-WASIKAGNPTYALVRKTITAA 40
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 28.8 bits (65), Expect = 7.7
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARR 749
K + + G++ GE L+ +++ KV+A AR+
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.385
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,147,154
Number of extensions: 871835
Number of successful extensions: 3199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2579
Number of HSP's successfully gapped: 392
Length of query: 958
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 855
Effective length of database: 3,825,930
Effective search space: 3271170150
Effective search space used: 3271170150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.4 bits)