BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4559
(336 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|91082291|ref|XP_973881.1| PREDICTED: similar to AGAP002077-PA [Tribolium castaneum]
Length = 304
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 86/117 (73%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
+ G+ L S+EAY +A QGPIRPA K PV+YG+KCV F+PP+F IE+ CI EYE +L
Sbjct: 177 KSCGIDLQSEEAYKLACQGPIRPANSKLPVIYGIKCVKFEPPEFVIEIQCINEYETYLRS 236
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMD 304
LI+++G KL S+A CT+IQCIR + F +E++LLRKHW +Q +I N+ ++D+ +
Sbjct: 237 LIHEIGMKLHSSAHCTAIQCIRHSYFTVENALLRKHWTLQDIITNMEQCIQIMDEHE 293
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 112 RQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
+ G+ L S+EAY +ACQGPIRPA K PV+YG+KCV F+PP+F I
Sbjct: 177 KSCGIDLQSEEAYKLACQGPIRPANSKLPVIYGIKCVKFEPPEFVI 222
>gi|270007464|gb|EFA03912.1| hypothetical protein TcasGA2_TC014046 [Tribolium castaneum]
Length = 240
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 86/117 (73%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
+ G+ L S+EAY +A QGPIRPA K PV+YG+KCV F+PP+F IE+ CI EYE +L
Sbjct: 113 KSCGIDLQSEEAYKLACQGPIRPANSKLPVIYGIKCVKFEPPEFVIEIQCINEYETYLRS 172
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMD 304
LI+++G KL S+A CT+IQCIR + F +E++LLRKHW +Q +I N+ ++D+ +
Sbjct: 173 LIHEIGMKLHSSAHCTAIQCIRHSYFTVENALLRKHWTLQDIITNMEQCIQIMDEHE 229
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 112 RQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
+ G+ L S+EAY +ACQGPIRPA K PV+YG+KCV F+PP+F I
Sbjct: 113 KSCGIDLQSEEAYKLACQGPIRPANSKLPVIYGIKCVKFEPPEFVI 158
>gi|357620125|gb|EHJ72431.1| hypothetical protein KGM_09344 [Danaus plexippus]
Length = 306
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 86/117 (73%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+G+ + SQ AYD+A QG IRPA K P++YG+KCVHF P+FT+E+ + EY+++L L+
Sbjct: 180 SGLHMESQTAYDLASQGLIRPANSKLPIIYGVKCVHFDSPNFTLEIQSVNEYDKYLWTLV 239
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPM 306
+DLG +L++AA CT +QCIR +F L+ +LLRKHW++ H++ N+ L+++ + +
Sbjct: 240 HDLGIQLKTAAHCTGLQCIRQGRFNLQLALLRKHWQLNHILNNMDQCRQLLEENENL 296
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 114 AGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
+G+ + SQ AYD+A QG IRPA K P++YG+KCVHF P+FT+
Sbjct: 180 SGLHMESQTAYDLASQGLIRPANSKLPIIYGVKCVHFDSPNFTL 223
>gi|321471521|gb|EFX82494.1| hypothetical protein DAPPUDRAFT_302506 [Daphnia pulex]
Length = 328
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 84/120 (70%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV NSQ AY++A G +RPA+ VVYG+KCVHF+PP+FT+E+HCI E EE+ +I+
Sbjct: 195 GVDPNSQTAYELASTGLLRPAVKGPTVVYGIKCVHFEPPNFTLEIHCINENEEYFAIMIH 254
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQL 310
DLG L++ A+C I+CIR+ F +E +LLRKHW ++++ ++++ T + + PQL
Sbjct: 255 DLGLTLKTTAVCKQIRCIRYGCFTVEDALLRKHWSLKYLPDHMSLCHTKLKTLPRTTPQL 314
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHF 150
S + +V+ I +N + + GV NSQ AY++A G +RPA+ VVYG+KCVHF
Sbjct: 171 SKSSIDRVMASIQASNQKSLFQYCGVDPNSQTAYELASTGLLRPAVKGPTVVYGIKCVHF 230
Query: 151 KPPDFTI 157
+PP+FT+
Sbjct: 231 EPPNFTL 237
>gi|241742049|ref|XP_002414158.1| conserved hypothetical protein [Ixodes scapularis]
gi|215508012|gb|EEC17466.1| conserved hypothetical protein [Ixodes scapularis]
Length = 325
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 91/131 (69%), Gaps = 2/131 (1%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
+ +GV +++QEAY++A G +RPA ++Y ++C F P FT+EV C+ E +L++
Sbjct: 182 KYSGVHMDTQEAYELAAAGTVRPADKSPTLIYNIRCTEFDLPYFTLEVSCLNEDASYLLQ 241
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLV--DKMDP 305
L++D+G +LRS A+C ++ +R+ QFGL+H+LLRKHW ++H++ NI H LV ++++P
Sbjct: 242 LVHDIGLRLRSCALCHRVRQVRYGQFGLDHALLRKHWSLEHILNNINHCRHLVTWEQLEP 301
Query: 306 MRPQLQSVNMT 316
P L V+++
Sbjct: 302 SSPHLVDVDVS 312
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 84 QETVTVPSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVY 143
Q T +I ++++L I + + + +GV +++QEAY++A G +RPA ++Y
Sbjct: 154 QATYGHITIAKMERLLSSIQATHQVQAFKYSGVHMDTQEAYELAAAGTVRPADKSPTLIY 213
Query: 144 GLKCVHFKPPDFTI 157
++C F P FT+
Sbjct: 214 NIRCTEFDLPYFTL 227
>gi|332374130|gb|AEE62206.1| unknown [Dendroctonus ponderosae]
Length = 304
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 77/103 (74%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV + SQ AYD+A+QG IRPA K P++YG+KCV F+ P FT+E+ C+ EYE+++ +I
Sbjct: 180 GVDMESQAAYDLAKQGLIRPANAKIPIIYGIKCVEFEGPHFTLEIQCVNEYEDYMTHIIN 239
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
++G KLRS A CT IQCIR ++F L+ +LL KHW + +++N+
Sbjct: 240 EIGLKLRSVAHCTDIQCIRHSRFTLKDALLIKHWTLAGILDNM 282
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV + SQ AYD+A QG IRPA K P++YG+KCV F+ P FT+
Sbjct: 180 GVDMESQAAYDLAKQGLIRPANAKIPIIYGIKCVEFEGPHFTL 222
>gi|193700133|ref|XP_001944222.1| PREDICTED: probable tRNA pseudouridine synthase 2-like
[Acyrthosiphon pisum]
Length = 316
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 77/104 (74%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
A V +Q AYD+A +G IRPA K P++YG+KC+ P+F IEV+ I EYE +L+ L+
Sbjct: 180 ANVDTQTQTAYDLATKGLIRPASTKSPLIYGIKCISLDLPNFIIEVNIINEYESYLLSLV 239
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+++G KLR +A CT+I+CIR++ F ++ +LL KHW +Q+V+EN+
Sbjct: 240 HEIGLKLRCSATCTAIRCIRYSSFTIQQALLMKHWNLQYVLENM 283
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 97 KVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFT 156
K++ I +N + A V +Q AYD+A +G IRPA K P++YG+KC+ P+F
Sbjct: 163 KLMSTIQASNQKKMFELANVDTQTQTAYDLATKGLIRPASTKSPLIYGIKCISLDLPNFI 222
Query: 157 I 157
I
Sbjct: 223 I 223
>gi|350416125|ref|XP_003490850.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Bombus
impatiens]
Length = 321
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 78/112 (69%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV + SQ AY++A +GPIRPA P+VY ++CV F PP+F +E+ C EY+ +L +I+
Sbjct: 188 GVDIQSQAAYELAIKGPIRPADPNIPMVYTIRCVDFSPPEFALEIVCTNEYDLYLKTIIH 247
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK 302
+LG KLRS A CT I CI+ F ++H+LL KHW +QH++ N+ + ++D+
Sbjct: 248 ELGLKLRSNATCTQILCIQDGLFNIQHALLTKHWTLQHIVNNMQMCQQIIDQ 299
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV + SQ AY++A +GPIRPA P+VY ++CV F PP+F +
Sbjct: 188 GVDIQSQAAYELAIKGPIRPADPNIPMVYTIRCVDFSPPEFAL 230
>gi|332017988|gb|EGI58625.1| Putative tRNA pseudouridine synthase 2 [Acromyrmex echinatior]
Length = 317
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 76/113 (67%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
G+ + SQ AY++A QGPIRP P++Y +KC+ FK P+FT+E+ CI E + +L L+
Sbjct: 188 CGLDIQSQAAYELAVQGPIRPIDKNIPMIYNIKCIDFKSPEFTLEIICINENDTYLKTLV 247
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK 302
+DLG +L S A CT IQC R+A F L +LL+KHW +++ NI T++++
Sbjct: 248 HDLGMQLHSVATCTQIQCFRYALFDLNLALLKKHWELENFCNNIVQCNTIINE 300
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 114 AGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
G+ + SQ AY++A QGPIRP P++Y +KC+ FK P+FT+
Sbjct: 188 CGLDIQSQAAYELAVQGPIRPIDKNIPMIYNIKCIDFKSPEFTL 231
>gi|340711427|ref|XP_003394277.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Bombus
terrestris]
Length = 298
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 79/112 (70%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV + SQ AY++A +GPI+PA P+VY ++CV F PP+F++E+ C EY+ +L +I+
Sbjct: 165 GVDIQSQAAYELAIKGPIKPADPNIPMVYTIRCVDFSPPEFSLEIVCTNEYDLYLKTIIH 224
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK 302
+LG KLRS A CT I C++ F ++H+LL KHW +QH++ N+ + ++D+
Sbjct: 225 ELGLKLRSNATCTQILCLQDGLFNIQHALLTKHWTLQHIVNNMQICQKIIDQ 276
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV + SQ AY++A +GPI+PA P+VY ++CV F PP+F++
Sbjct: 165 GVDIQSQAAYELAIKGPIKPADPNIPMVYTIRCVDFSPPEFSL 207
>gi|312384743|gb|EFR29397.1| hypothetical protein AND_01695 [Anopheles darlingi]
Length = 273
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 83/133 (62%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+G+ + SQ AY++A G IRPA K+P++YG++ ++ P FT+EVH + E E +L LI
Sbjct: 141 SGIDIQSQAAYELACGGTIRPADNKQPMIYGIRLTEYRKPFFTVEVHAMNETEAYLGELI 200
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQ 309
+++G L+S A C +I+CIR F LE SLL+K W +Q++I ++AH L+ K M Q
Sbjct: 201 HEIGINLKSCAHCVNIRCIRHGHFTLEDSLLKKDWNLQNIISSMAHTNKLLKKYPSMLVQ 260
Query: 310 LQSVNMTDSDSTD 322
S T + D
Sbjct: 261 TSSALQTLDTAAD 273
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 49/82 (59%)
Query: 76 FVPALLPWQETVTVPSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPA 135
F + + + TV+ + + ++L I ++ ++ +G+ + SQ AY++AC G IRPA
Sbjct: 103 FAESRVVARATVSHIGSEKIGRLLASIQASHQRKMYELSGIDIQSQAAYELACGGTIRPA 162
Query: 136 LLKEPVVYGLKCVHFKPPDFTI 157
K+P++YG++ ++ P FT+
Sbjct: 163 DNKQPMIYGIRLTEYRKPFFTV 184
>gi|307208066|gb|EFN85597.1| Probable tRNA pseudouridine synthase 2 [Harpegnathos saltator]
Length = 317
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 81/123 (65%), Gaps = 7/123 (5%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV + SQ AY++A +G IRP K P++Y +KC+ F PP+FT+EV I E + +L LI+
Sbjct: 189 GVDMQSQAAYELATKGLIRPVDKKIPMIYSIKCIDFTPPEFTLEVVSINEDDMYLKSLIH 248
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAH-------NETLVDKM 303
LG KL S A CT IQC ++A F + +LL+KHW +Q++++N+ N+ L+ ++
Sbjct: 249 TLGMKLHSVATCTQIQCFQYALFDINLALLKKHWNIQNILDNMEQCDNILNKNKNLLKQI 308
Query: 304 DPM 306
DP+
Sbjct: 309 DPI 311
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV + SQ AY++A +G IRP K P++Y +KC+ F PP+FT+
Sbjct: 189 GVDMQSQAAYELATKGLIRPVDKKIPMIYSIKCIDFTPPEFTL 231
>gi|118793619|ref|XP_320970.3| AGAP002077-PA [Anopheles gambiae str. PEST]
gi|116115897|gb|EAA01531.3| AGAP002077-PA [Anopheles gambiae str. PEST]
Length = 311
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 80/123 (65%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+G+ + SQ AY++A +G IRPA + P++YG++ ++ P FTIE+H I E E +L LI
Sbjct: 182 SGIDIQSQAAYELACKGTIRPADNRLPMIYGIRLAEYRKPFFTIEIHAINETEAYLGELI 241
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQ 309
+++G L+S A CT ++CIR F LE SLL+K W +Q++I +AH LV++ M Q
Sbjct: 242 HEIGINLKSCAHCTGVRCIRHGHFLLEDSLLKKDWNLQNIISGMAHTNKLVNQHPDMLQQ 301
Query: 310 LQS 312
S
Sbjct: 302 SSS 304
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%)
Query: 76 FVPALLPWQETVTVPSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPA 135
F + + + T++ + + ++L I ++ + +G+ + SQ AY++AC+G IRPA
Sbjct: 144 FADSRVTARATISHIGSEKIGRLLAAIQASHQRKMFELSGIDIQSQAAYELACKGTIRPA 203
Query: 136 LLKEPVVYGLKCVHFKPPDFTI 157
+ P++YG++ ++ P FTI
Sbjct: 204 DNRLPMIYGIRLAEYRKPFFTI 225
>gi|66513640|ref|XP_623484.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Apis
mellifera]
Length = 319
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 77/114 (67%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV + SQ AY++A QGPIRPA P++Y +KC F PP+FT+EV C EY+ +L +I+
Sbjct: 186 GVDIQSQAAYELAVQGPIRPANSNIPMIYTIKCTDFSPPEFTLEVVCTNEYDLYLKTIIH 245
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMD 304
+LG +LRS A CT I CI+ F ++ +LL K+W ++ ++ N+ + ++DK D
Sbjct: 246 ELGMQLRSNATCTQIICIQDGLFNIQQALLSKYWNLKEIMYNMQMCKKIIDKND 299
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV + SQ AY++A QGPIRPA P++Y +KC F PP+FT+
Sbjct: 186 GVDIQSQAAYELAVQGPIRPANSNIPMIYTIKCTDFSPPEFTL 228
>gi|380029824|ref|XP_003698565.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Apis
florea]
Length = 321
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 77/114 (67%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV + SQ AY++A QG IRPA P++Y +KCV F PP+FT+E+ C EY+ +L +I+
Sbjct: 186 GVDIQSQAAYELAVQGLIRPANSNIPMIYTIKCVDFSPPEFTLEIVCTNEYDLYLKTIIH 245
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMD 304
+LG +LRS A CT I C++ F ++ +LL K+W ++ ++ NI + ++DK D
Sbjct: 246 ELGMQLRSNATCTQIICVQDGLFNIQQALLSKYWNLKEIMHNIQMCQKIIDKND 299
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV + SQ AY++A QG IRPA P++Y +KCV F PP+FT+
Sbjct: 186 GVDIQSQAAYELAVQGLIRPANSNIPMIYTIKCVDFSPPEFTL 228
>gi|157105728|ref|XP_001649000.1| hypothetical protein AaeL_AAEL004376 [Aedes aegypti]
gi|108880031|gb|EAT44256.1| AAEL004376-PA [Aedes aegypti]
Length = 323
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 77/122 (63%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV + SQ AYD+A +G IRPA +P++YG++ V F+ P FT+E+H I E E ++ L++
Sbjct: 183 GVDMQSQAAYDLAVKGTIRPADKSQPMIYGIRLVEFRRPFFTLEMHAINETEAYIGNLVH 242
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQL 310
++G L+S A C I+CIR F L +LLRK W +Q ++ N+AH L+ + M Q
Sbjct: 243 EIGLNLKSVAHCVGIRCIRHGHFELGDALLRKDWNLQCILANMAHANQLLQRHPEMLQQT 302
Query: 311 QS 312
S
Sbjct: 303 SS 304
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV + SQ AYD+A +G IRPA +P++YG++ V F+ P FT+
Sbjct: 183 GVDMQSQAAYDLAVKGTIRPADKSQPMIYGIRLVEFRRPFFTL 225
>gi|346472479|gb|AEO36084.1| hypothetical protein [Amblyomma maculatum]
Length = 329
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
+ AGV LNSQ AY++A G +RPA +VY ++CV P FT+EV CI E E +L++
Sbjct: 185 KYAGVPLNSQAAYEMAATGTVRPAEKSPTLVYNIRCVELNLPYFTLEVSCIHETESYLLQ 244
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK--MDP 305
L++++G +L S AIC I+ IR+ F + +LLRKHW +++++ NI LV + ++P
Sbjct: 245 LVHEIGLRLHSCAICNGIRLIRYGLFNTDLALLRKHWTLEYILRNIHDCWPLVKQELLEP 304
Query: 306 MRPQLQSVN 314
P L VN
Sbjct: 305 QSPYLVDVN 313
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHF 150
++ L+ +L I + + + AGV LNSQ AY++A G +RPA +VY ++CV
Sbjct: 164 TVAKLEHLLGSIQSAYQVQAFKYAGVPLNSQAAYEMAATGTVRPAEKSPTLVYNIRCVEL 223
Query: 151 KPPDFTI 157
P FT+
Sbjct: 224 NLPYFTL 230
>gi|156553362|ref|XP_001601725.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Nasonia
vitripennis]
Length = 312
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 73/104 (70%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
G+ + +Q AY++A +GPIRPA + P+VY +KC+ FKPP+FT+E+ I E +E L ++
Sbjct: 182 GIDMQTQAAYELAIKGPIRPADPRVPMVYNIKCIDFKPPEFTLEIVAINETDEHLKAIVA 241
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIA 294
+LG +L S A C+ IQC +F F ++ SLL KHW +Q ++ NI+
Sbjct: 242 ELGYRLHSTAYCSQIQCTQFGLFHVKDSLLSKHWDLQSIMSNIS 285
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
G+ + +Q AY++A +GPIRPA + P+VY +KC+ FKPP+FT+
Sbjct: 182 GIDMQTQAAYELAIKGPIRPADPRVPMVYNIKCIDFKPPEFTL 224
>gi|427783685|gb|JAA57294.1| Putative pseudouridine synthase [Rhipicephalus pulchellus]
Length = 325
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 2/135 (1%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
+ AGV LNSQ A+++A + +RPA P+VY ++CV P FT+E+ CI E E++L++
Sbjct: 185 KYAGVPLNSQAAFEMAAKDTVRPADKSPPLVYNIRCVELDLPYFTLELSCIHETEDYLLQ 244
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK--MDP 305
L++++G L S AIC ++ IR+ F +LLRKHW +++++ NI LV + ++P
Sbjct: 245 LVHEIGLHLHSCAICHRVRLIRYGLFNTNLALLRKHWTLEYILRNIQDCRQLVRQELLEP 304
Query: 306 MRPQLQSVNMTDSDS 320
P +N D S
Sbjct: 305 HSPHFTDLNEADKSS 319
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L+++L I ++ + + AGV LNSQ A+++A + +RPA P+VY ++CV P
Sbjct: 168 LERLLGSIQSSYQVQAFKYAGVPLNSQAAFEMAAKDTVRPADKSPPLVYNIRCVELDLPY 227
Query: 155 FTI 157
FT+
Sbjct: 228 FTL 230
>gi|307169890|gb|EFN62399.1| Probable tRNA pseudouridine synthase 2 [Camponotus floridanus]
Length = 319
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 79/124 (63%), Gaps = 7/124 (5%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+G+ + SQ AY+ A +G +RPA P+VY +KCV F P+FT+E+ I E E +L L+
Sbjct: 190 SGIDIQSQAAYEFAVKGLMRPANNDIPMVYSIKCVDFTSPEFTLEIVAINENEMYLKTLV 249
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIA-------HNETLVDK 302
+DLG +L S A CT I C R+A F L+ +LL KHW +Q++++NI N +L+ +
Sbjct: 250 HDLGIQLHSVATCTQILCFRYALFNLDLALLPKHWELQNILDNIEQCHDILNQNRSLLKQ 309
Query: 303 MDPM 306
+P+
Sbjct: 310 KNPI 313
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 114 AGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
+G+ + SQ AY+ A +G +RPA P+VY +KCV F P+FT+
Sbjct: 190 SGIDIQSQAAYEFAVKGLMRPANNDIPMVYSIKCVDFTSPEFTL 233
>gi|291223945|ref|XP_002731969.1| PREDICTED: probable tRNA pseudouridine synthase 2-like
[Saccoglossus kowalevskii]
Length = 341
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 82/122 (67%), Gaps = 5/122 (4%)
Query: 177 NNCLFVCLFVHRQA-----GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDF 231
N L VH+ A GV + SQ AY++A +G +RPA+ P++ +KC+HF P F
Sbjct: 164 NRVLAAMSRVHQSAMTRFSGVEMQSQAAYELAVRGMLRPAVDSPPLIIRMKCIHFDKPHF 223
Query: 232 TIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIE 291
TIE+ C+ E+ +FL + +++LG +++S+A+ TS++ R F L+H+LL+KHW+++++++
Sbjct: 224 TIEMECLKEHGQFLRKTVHELGLEMKSSAVATSVRRTRQGPFTLDHALLQKHWKLEYILQ 283
Query: 292 NI 293
I
Sbjct: 284 AI 285
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 74 DLFVPALLPWQETVTVPSIKP--LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGP 131
D F + W++T T IK + +VL + + + R +GV + SQ AY++A +G
Sbjct: 141 DTFDESGKVWEKT-TYHHIKSEKMNRVLAAMSRVHQSAMTRFSGVEMQSQAAYELAVRGM 199
Query: 132 IRPALLKEPVVYGLKCVHFKPPDFTI 157
+RPA+ P++ +KC+HF P FTI
Sbjct: 200 LRPAVDSPPLIIRMKCIHFDKPHFTI 225
>gi|24585948|ref|NP_610201.1| CG7849 [Drosophila melanogaster]
gi|21626800|gb|AAM68342.1| CG7849 [Drosophila melanogaster]
gi|85857766|gb|ABC86418.1| IP08469p [Drosophila melanogaster]
gi|220952296|gb|ACL88691.1| CG7849-PB [synthetic construct]
gi|220958788|gb|ACL91937.1| CG7849-PB [synthetic construct]
Length = 317
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +QEAY++A +G +RPA +PVVYG+K +HF P FT+E+H I E +E+L L++
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTLELHAINETQEYLATLVH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQL 310
D+ LR+ A C+ ++C+R A F + SLLR W + +I+N+ ++ + P +
Sbjct: 250 DMALDLRTVAHCSQLRCVRHAHFDVTDSLLRHAWHLPGIIKNLRQQRDIL-RAHPQLLRQ 308
Query: 311 QSVNMTDSD 319
Q V + +D
Sbjct: 309 QRVELRATD 317
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +QEAY++AC+G +RPA +PVVYG+K +HF P FT+
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTL 232
>gi|195124736|ref|XP_002006843.1| GI18369 [Drosophila mojavensis]
gi|193911911|gb|EDW10778.1| GI18369 [Drosophila mojavensis]
Length = 317
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 77/111 (69%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +Q AY++A +G +RPA +PVVYG+K +HF+ P FT+E+H I E E+++ LI+
Sbjct: 190 GVDLQTQAAYELACKGLLRPADNSQPVVYGIKLIHFERPHFTLELHTINESEQYMAALIH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVD 301
D+ +LR+ A C+ I+CIR A F + SLLR W + +++N+ +++++
Sbjct: 250 DMAIELRTVAHCSQIRCIRHAHFDVSESLLRHGWHLPGIMKNLRLQQSVLE 300
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +Q AY++AC+G +RPA +PVVYG+K +HF+ P FT+
Sbjct: 190 GVDLQTQAAYELACKGLLRPADNSQPVVYGIKLIHFERPHFTL 232
>gi|170045897|ref|XP_001850528.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167868756|gb|EDS32139.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 307
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 76/119 (63%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV + SQ AYD+A +G IRPA +P++YG++ F+ P FTIE+H I E E +L +L++
Sbjct: 183 GVDMQSQAAYDLAVKGTIRPADNSQPMIYGIRLAEFRRPFFTIEIHAINETEPYLGQLVH 242
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQ 309
++G L+S A C +I+CIR F L+ SLLR W +Q V+ +A + L+ + M Q
Sbjct: 243 EIGLGLKSVAHCVAIRCIRHGHFELDKSLLRHDWNLQCVLAGMASSRQLLQEHPEMLHQ 301
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV + SQ AYD+A +G IRPA +P++YG++ F+ P FTI
Sbjct: 183 GVDMQSQAAYDLAVKGTIRPADNSQPMIYGIRLAEFRRPFFTI 225
>gi|195353808|ref|XP_002043395.1| GM16534 [Drosophila sechellia]
gi|195359342|ref|XP_002045351.1| GM13571 [Drosophila sechellia]
gi|194127518|gb|EDW49561.1| GM16534 [Drosophila sechellia]
gi|194130816|gb|EDW52859.1| GM13571 [Drosophila sechellia]
Length = 317
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 71/103 (68%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +QEAY++A +G +RPA +PVVYG+K +HF P FT+E+H I E +E+L L++
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTLELHAINETQEYLATLVH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
D+ LR+ A C+ ++C+R A F + SLLR W + +I+N+
Sbjct: 250 DMALDLRTVAHCSQLRCVRHAHFDVTDSLLRHAWHLPGIIKNL 292
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +QEAY++AC+G +RPA +PVVYG+K +HF P FT+
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTL 232
>gi|443702531|gb|ELU00519.1| hypothetical protein CAPTEDRAFT_227440 [Capitella teleta]
Length = 467
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 93/152 (61%), Gaps = 9/152 (5%)
Query: 185 FVHRQAGVRLNSQEAYDIARQGPIRP-ALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEE 243
++ AGV+++SQEAY++A QG RP A VVY +KC+ F+PP FTIEVHCI E E
Sbjct: 316 YMFEAAGVQMDSQEAYEMAVQGFFRPIAKNSGQVVYSMKCIEFQPPFFTIEVHCINENTE 375
Query: 244 FLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETL--VD 301
L LI++LG +L+ + C +++ +R+ +F L +L R W +++I NI ++ +D
Sbjct: 376 SLANLIHNLGAQLKCLSHCVTLRRVRYGRFLLGQALHRNEWTAENIIANIRKCKSFITID 435
Query: 302 KM--DPMRPQLQSVNMTDSDSTDGSNVSDGNR 331
K+ P Q+Q M + + ++S+GNR
Sbjct: 436 KVLESPGIKQIQQEEMAE----EQKHLSEGNR 463
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRP-ALLKEPVVYGLKCVH 149
S+ + ++L + + + ++ AGV+++SQEAY++A QG RP A VVY +KC+
Sbjct: 298 SLDKVDRILAKMQSGHQRYMFEAAGVQMDSQEAYEMAVQGFFRPIAKNSGQVVYSMKCIE 357
Query: 150 FKPPDFTI 157
F+PP FTI
Sbjct: 358 FQPPFFTI 365
>gi|194864124|ref|XP_001970782.1| GG23194 [Drosophila erecta]
gi|190662649|gb|EDV59841.1| GG23194 [Drosophila erecta]
Length = 317
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +QEAY++A +G +RPA +PVVYG+K +HF+ P FT+E+H I E +E+L L++
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFERPHFTLELHAINETQEYLATLVH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQL 310
D+ LR+ A C ++C+R A F + SLLR W + +I+N+ ++ K P +
Sbjct: 250 DMALDLRTVAHCCQLRCVRHAHFDVTDSLLRHAWHLPGIIKNLRQQRDIL-KAHPQLLRQ 308
Query: 311 QSVNMTDSD 319
Q V + ++
Sbjct: 309 QRVELQATE 317
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +QEAY++AC+G +RPA +PVVYG+K +HF+ P FT+
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFERPHFTL 232
>gi|195580892|ref|XP_002080268.1| GD10395 [Drosophila simulans]
gi|194192277|gb|EDX05853.1| GD10395 [Drosophila simulans]
Length = 317
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 71/103 (68%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +QEAY++A +G +RPA +PVVYG+K +HF P FT+E+H I E +E+L L++
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTLELHAINETQEYLATLVH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
D+ LR+ A C+ ++C+R A F + SLLR W + +++N+
Sbjct: 250 DMALDLRTVAHCSQLRCVRHAHFDVTDSLLRHAWHLPGIVKNL 292
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +QEAY++AC+G +RPA +PVVYG+K +HF P FT+
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTL 232
>gi|383848499|ref|XP_003699887.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Megachile
rotundata]
Length = 328
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 71/103 (68%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV + SQ AYD+A +GP+RPA P++Y +KCV F PP F +E+ C+ E + +L +I+
Sbjct: 189 GVDMQSQAAYDLAVKGPLRPADPNVPMIYTIKCVEFSPPHFALEIVCVNEDDMYLKTIIH 248
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+LG +L S A CT + CI+ F + ++LL KHW ++++IEN+
Sbjct: 249 ELGMQLHSTATCTQVLCIQDGLFTINNALLPKHWSLKNIIENM 291
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV + SQ AYD+A +GP+RPA P++Y +KCV F PP F +
Sbjct: 189 GVDMQSQAAYDLAVKGPLRPADPNVPMIYTIKCVEFSPPHFAL 231
>gi|148229437|ref|NP_001091191.1| TruB pseudouridine (psi) synthase homolog 2 [Xenopus laevis]
gi|120538305|gb|AAI29716.1| LOC100036957 protein [Xenopus laevis]
Length = 329
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 84/132 (63%), Gaps = 4/132 (3%)
Query: 192 VRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYD 251
V L SQEAY++A +G +RP + P++ G++C+ F PPDFT+E+ C+ E +++L ++I++
Sbjct: 185 VDLKSQEAYELAVEGKLRPMVKSPPIILGVRCLEFSPPDFTLEIQCMHETQQYLRKMIHE 244
Query: 252 LGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQLQ 311
+G +LRS+AICT ++ R F L+ +LLR HW ++ + I + D++ P
Sbjct: 245 IGLELRSSAICTQVRRTRDGPFTLDCALLRTHWDLRSIQRAITECKARSDEVSRGNPN-- 302
Query: 312 SVNMTDSDSTDG 323
M ++++ +G
Sbjct: 303 --TMRETEAAEG 312
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 95 LQKVLKIIDNNN--CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP 152
L+++L +I +N L +H + V L SQEAY++A +G +RP + P++ G++C+ F P
Sbjct: 164 LERILAVIQGSNHKALIMHSR--VDLKSQEAYELAVEGKLRPMVKSPPIILGVRCLEFSP 221
Query: 153 PDFTI 157
PDFT+
Sbjct: 222 PDFTL 226
>gi|194758184|ref|XP_001961342.1| GF11045 [Drosophila ananassae]
gi|190622640|gb|EDV38164.1| GF11045 [Drosophila ananassae]
Length = 314
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +Q AY++A +G IRPA PV+YG+ +HF+ P FT+E+H I E EE+L L++
Sbjct: 189 GVDLQTQAAYELACKGLIRPADNNHPVIYGINLIHFERPHFTLELHAINETEEYLAALVH 248
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK----MDPM 306
D+ +LR+ A C I+C+R + F + SLLR W + +++N+ + L+ + M P
Sbjct: 249 DMALELRTVAHCAQIRCVRHSHFDIRDSLLRHGWNLPGIMKNLRRHRDLLREHPQMMHPR 308
Query: 307 RPQLQS 312
+ LQ+
Sbjct: 309 QINLQA 314
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +Q AY++AC+G IRPA PV+YG+ +HF+ P FT+
Sbjct: 189 GVDLQTQAAYELACKGLIRPADNNHPVIYGINLIHFERPHFTL 231
>gi|195380864|ref|XP_002049181.1| GJ21442 [Drosophila virilis]
gi|194143978|gb|EDW60374.1| GJ21442 [Drosophila virilis]
Length = 318
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 77/120 (64%), Gaps = 4/120 (3%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +Q AY++A +G +RPA +PVVYG+K +HF+ P FT+E+H I E E+++ L++
Sbjct: 190 GVDLQTQAAYELACKGLLRPADNSQPVVYGIKLIHFERPHFTLELHTINESEQYMAALVH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQL 310
D+ +LR+ A C+ ++CIR A F + SLLR W + ++ N+ +++ PQL
Sbjct: 250 DMAIELRTVAHCSQLRCIRHAHFDVTDSLLRHGWHLPGIVRNMRQQRDVLEA----HPQL 305
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +Q AY++AC+G +RPA +PVVYG+K +HF+ P FT+
Sbjct: 190 GVDLQTQAAYELACKGLLRPADNSQPVVYGIKLIHFERPHFTL 232
>gi|242018037|ref|XP_002429489.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514427|gb|EEB16751.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 308
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 66/98 (67%)
Query: 196 SQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTK 255
SQE YD G +RP + P+ Y K V F PP+FTIEV+CI E E L+ I++LG
Sbjct: 186 SQELYDSLVAGLLRPKEILTPIFYSYKLVEFNPPEFTIEVYCINENESSLMNTIHNLGIS 245
Query: 256 LRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
LRS A CT+++C+++ FG+ +LL+K W++++++ N+
Sbjct: 246 LRSLATCTALKCVKYGFFGISDALLKKEWKIENIVNNM 283
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 120 SQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
SQE YD G +RP + P+ Y K V F PP+FTI
Sbjct: 186 SQELYDSLVAGLLRPKEILTPIFYSYKLVEFNPPEFTI 223
>gi|350276132|ref|NP_001002200.2| probable tRNA pseudouridine synthase 2 [Danio rerio]
Length = 354
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 192 VRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYD 251
V L +QEAY++A +G + P P++ GL+C+ F PP FT+EV C+ E +++L +LI++
Sbjct: 188 VELQTQEAYELAARGLLYPDGKSPPILTGLRCIKFNPPHFTLEVRCVNETQKYLRKLIHE 247
Query: 252 LGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQLQ 311
+G +LR++A+CT ++ R F +E++L R+HW V++ I H K+ +Q
Sbjct: 248 VGLELRASAVCTKVRRTRDGPFKVENALTRQHWTADSVLQAINHFRKTARKIRKSGMYMQ 307
Query: 312 S-VNMT-DSDSTD 322
S V MT D+D+ +
Sbjct: 308 SNVRMTLDADTRE 320
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L++VL ++ +N + + V L +QEAY++A +G + P P++ GL+C+ F PP
Sbjct: 167 LERVLAMLQGSNQKALITYSQVELQTQEAYELAARGLLYPDGKSPPILTGLRCIKFNPPH 226
Query: 155 FTI 157
FT+
Sbjct: 227 FTL 229
>gi|195023580|ref|XP_001985713.1| GH20932 [Drosophila grimshawi]
gi|193901713|gb|EDW00580.1| GH20932 [Drosophila grimshawi]
Length = 317
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 4/120 (3%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +Q AY++A +G +RPA + V+YG+K +HF P FT+E+H I E EE++ LI+
Sbjct: 190 GVDLQTQAAYELACKGLLRPADNSQTVIYGIKLIHFDRPHFTLELHTINESEEYMAALIH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQL 310
D+ +LR+ A C+ ++CIR A F + SLLR W + +++N+ +++ PQL
Sbjct: 250 DMAIELRTVAHCSQLRCIRHAHFDVMESLLRHGWHLPGIVKNLRQQRAVLEA----HPQL 305
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +Q AY++AC+G +RPA + V+YG+K +HF P FT+
Sbjct: 190 GVDLQTQAAYELACKGLLRPADNSQTVIYGIKLIHFDRPHFTL 232
>gi|198461484|ref|XP_002139006.1| GA24084 [Drosophila pseudoobscura pseudoobscura]
gi|198137356|gb|EDY69564.1| GA24084 [Drosophila pseudoobscura pseudoobscura]
Length = 315
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 76/119 (63%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +Q AY++A +G IRPA PV+YG+K +HF+ P FT+E+H I E +E+L L++
Sbjct: 190 GVDLQTQAAYELACKGLIRPADNSLPVIYGIKLIHFERPHFTLELHSINETQEYLAALVH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQ 309
D+ +LR+ A C+ ++CIR + F + SLLR W + +++N+ ++ + M Q
Sbjct: 250 DMALELRTVAHCSQLRCIRHSHFDVTDSLLRHGWHLPGIVKNLRQQREILREHPQMLEQ 308
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +Q AY++AC+G IRPA PV+YG+K +HF+ P FT+
Sbjct: 190 GVDLQTQAAYELACKGLIRPADNSLPVIYGIKLIHFERPHFTL 232
>gi|405952486|gb|EKC20291.1| Putative tRNA pseudouridine synthase 2 [Crassostrea gigas]
Length = 200
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Query: 190 AGVRLNSQEAYDIARQGPIRPAL-LKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
AGV SQEAY++ ++G ++P L P++YG++C++F+PP+FT+EVHC+ E FL
Sbjct: 60 AGVVPGSQEAYELLKKGLVKPKNPLTPPLIYGVRCINFEPPNFTLEVHCVNESYTFLRDF 119
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAH-NETLVDKMD 304
IY +G LRS+A C+ I+ IR+ LEH+L+ W ++ V +I N+ L+ K +
Sbjct: 120 IYKIGVSLRSSAYCSKIRRIRYGPICLEHALVADEWNLKKVCASIKQCNKLLLRKKE 176
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 114 AGVRLNSQEAYDVACQGPIRPAL-LKEPVVYGLKCVHFKPPDFTI 157
AGV SQEAY++ +G ++P L P++YG++C++F+PP+FT+
Sbjct: 60 AGVVPGSQEAYELLKKGLVKPKNPLTPPLIYGVRCINFEPPNFTL 104
>gi|195171613|ref|XP_002026598.1| GL11803 [Drosophila persimilis]
gi|194111524|gb|EDW33567.1| GL11803 [Drosophila persimilis]
Length = 315
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 76/119 (63%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +Q AY++A +G IRPA PV+YG+K +HF+ P FT+E+H I E +E+L L++
Sbjct: 190 GVDLQTQAAYELACKGLIRPADNSLPVIYGIKLIHFERPYFTLELHSINETQEYLAALVH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQ 309
D+ +LR+ A C+ ++CIR + F + SLLR W + +++N+ ++ + M Q
Sbjct: 250 DMALELRTVAHCSQLRCIRHSHFDVTDSLLRHGWHLPGIVKNLRQQREILREHPQMLEQ 308
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +Q AY++AC+G IRPA PV+YG+K +HF+ P FT+
Sbjct: 190 GVDLQTQAAYELACKGLIRPADNSLPVIYGIKLIHFERPYFTL 232
>gi|444721256|gb|ELW62000.1| putative tRNA pseudouridine synthase 2 [Tupaia chinensis]
Length = 376
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 19/233 (8%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRP---ALLKEPVVYGLKCVH-- 149
L +VL +I ++ + + + L +QEAY++A +G IRP + + P V H
Sbjct: 135 LDRVLAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPRNKSPMLAPAVPREVSGHEP 194
Query: 150 -FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPI 208
P T G L L AV++ + L + + + L +QEAY++A +G I
Sbjct: 195 RTPPHHVTRGKLDRVL-----AVIQGSHQKALVMY------SNLDLKTQEAYEMAVRGLI 243
Query: 209 RPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCI 268
RP +V G++C HF PP+F +EV C+ E + L RL++++G +L+++A+C+ ++
Sbjct: 244 RPRNKSPMLVTGIQCCHFAPPEFVLEVQCLHETPQQLRRLVHEVGLELKTSAVCSQVRRT 303
Query: 269 RFAQFGLEHSLLRKHWRVQHVIENI--AHNETLVDKMDPMRPQLQSVNMTDSD 319
R F L+ +LLR HW + + + I A + +RP L + ++ D
Sbjct: 304 RDGFFTLDDALLRTHWDLHSIQDAIQAAAPRVAAELEKSLRPGLGTQQLSGPD 356
>gi|225708266|gb|ACO09979.1| Probable tRNA pseudouridine synthase 2 [Osmerus mordax]
Length = 333
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 7/136 (5%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ V ++SQEAY++A +G +RP P++ GL+C+HF+PP FT+EV CI E + +L +++
Sbjct: 183 SNVDMSSQEAYELAVKGALRPDGKTPPIMLGLRCLHFQPPHFTLEVQCINETQRYLCKVL 242
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQ 309
+++G +LRS+A+C ++ R F L +L R HW V++ I L + R
Sbjct: 243 HEVGLELRSSAVCKGVRRTRDGPFILRDTLTRHHWAAPDVMQAIQQYRCLTNAPKHTRMD 302
Query: 310 LQSV-------NMTDS 318
+S N TDS
Sbjct: 303 TKSTITGTQEDNHTDS 318
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 95 LQKVLKIID--NNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP 152
L+KVL ++ N L V+ + V ++SQEAY++A +G +RP P++ GL+C+HF+P
Sbjct: 164 LEKVLAMMQGVNQKALLVY--SNVDMSSQEAYELAVKGALRPDGKTPPIMLGLRCLHFQP 221
Query: 153 PDFTI 157
P FT+
Sbjct: 222 PHFTL 226
>gi|308322121|gb|ADO28198.1| probable tRNA pseudouridine synthase 2 [Ictalurus furcatus]
Length = 350
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 75/124 (60%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L++QEAY++A +G +RP P++ GL+C+ +KPP FT+EV C+ E + +L +L++++G
Sbjct: 188 LSTQEAYELAVKGLLRPQDKSPPILTGLRCLSYKPPQFTLEVQCVNETQRYLRKLVHEVG 247
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQLQSV 313
+LR+ A+CT ++ R F +E +L R HW + +I IA K+ Q V
Sbjct: 248 LELRTNAVCTKVRRTRDGPFKMEDALTRHHWTTEDIIPAIASFRRTTRKIRKNDSYRQVV 307
Query: 314 NMTD 317
+D
Sbjct: 308 KQSD 311
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L++VL +I N + + + L++QEAY++A +G +RP P++ GL+C+ +KPP
Sbjct: 165 LERVLAMIQGANQKALITYSQMDLSTQEAYELAVKGLLRPQDKSPPILTGLRCLSYKPPQ 224
Query: 155 FTI 157
FT+
Sbjct: 225 FTL 227
>gi|58331885|ref|NP_001011086.1| probable tRNA pseudouridine synthase 2 [Xenopus (Silurana)
tropicalis]
gi|82180269|sp|Q5XGG2.1|TRUB2_XENTR RecName: Full=Probable tRNA pseudouridine synthase 2
gi|54038237|gb|AAH84478.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli) [Xenopus
(Silurana) tropicalis]
Length = 325
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L SQEAYD+A QG +RP + P++ G++C+ F PP+FT+E+ C+ E +++L ++I+++G
Sbjct: 187 LQSQEAYDLAVQGKLRPMVKSPPIILGIRCLEFSPPEFTLEIQCMHETQQYLRKMIHEIG 246
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHW---RVQHVIENIAHNETLVDKMDPMR 307
+LRS+A+CT ++ R F ++ SLLR W +Q I V + +P R
Sbjct: 247 LELRSSAVCTQVRRSRDGPFTVDCSLLRTQWDLGSIQGAIRECRAQTEGVSRGNPDR 303
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L+++L +I N + + + L SQEAYD+A QG +RP + P++ G++C+ F PP+
Sbjct: 164 LERILAVIQGTNQKALITHSHLDLQSQEAYDLAVQGKLRPMVKSPPIILGIRCLEFSPPE 223
Query: 155 FTI 157
FT+
Sbjct: 224 FTL 226
>gi|49257545|gb|AAH74078.1| Zgc:91836 [Danio rerio]
Length = 341
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
Query: 192 VRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYD 251
V L +QEAY++A +G + P P++ GL+C+ F PP FT+EV C+ E +++L +LI++
Sbjct: 175 VDLQTQEAYELAARGLLYPDGKSPPILTGLRCIKFNPPHFTLEVRCVNETQKYLRKLIHE 234
Query: 252 LGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQLQ 311
+G +L ++A+CT ++ R F +E++L R+HW V++ I H K+ +Q
Sbjct: 235 VGLELLASAVCTKVRRTRDGPFKVENALTRQHWTADSVLQAINHFRKTARKIRKSGMYMQ 294
Query: 312 S-VNMT-DSDSTD 322
S V MT D+D+ +
Sbjct: 295 SNVRMTLDADTRE 307
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L++VL ++ +N + + V L +QEAY++A +G + P P++ GL+C+ F PP
Sbjct: 154 LERVLAMLQGSNQKALITYSQVDLQTQEAYELAARGLLYPDGKSPPILTGLRCIKFNPPH 213
Query: 155 FTI 157
FT+
Sbjct: 214 FTL 216
>gi|260811263|ref|XP_002600342.1| hypothetical protein BRAFLDRAFT_66575 [Branchiostoma floridae]
gi|229285628|gb|EEN56354.1| hypothetical protein BRAFLDRAFT_66575 [Branchiostoma floridae]
Length = 261
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 73/111 (65%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
AGV + SQEAY++A QG +RP + P+V ++C+ ++PP+FT+EV C+ E ++L +L+
Sbjct: 123 AGVDIQSQEAYELASQGLLRPRMTSPPLVLAMRCLEYRPPNFTLEVQCVHETPQWLRKLV 182
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLV 300
+D+G +LRS A+ T ++ R F + +LL KH + + V E I + LV
Sbjct: 183 HDIGLELRSTAVSTKVRRTRDGYFTSDDALLIKHCKYEFVAEAIERSRHLV 233
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHF 150
S + L +V+ + N+ AGV + SQEAY++A QG +RP + P+V ++C+ +
Sbjct: 100 SGEKLARVVSFLQRNHQNLTTEYAGVDIQSQEAYELASQGLLRPRMTSPPLVLAMRCLEY 159
Query: 151 KPPDFTI 157
+PP+FT+
Sbjct: 160 RPPNFTL 166
>gi|195475638|ref|XP_002090091.1| GE20703 [Drosophila yakuba]
gi|194176192|gb|EDW89803.1| GE20703 [Drosophila yakuba]
Length = 317
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 4/120 (3%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +QEAY++A +G +RPA + VVYG+K +HF+ P FT+E++ I E +E L L++
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQLVVYGIKLIHFERPYFTLELYTINETQECLATLVH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQL 310
D+ LR+ A C+ ++C+R A F + SLLR W + +I+N+ ++ + PQL
Sbjct: 250 DMALDLRTVAHCSQLRCVRHAHFDVTDSLLRHAWHLPGIIKNLRQQRNILRE----HPQL 305
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYS 162
GV L +QEAY++AC+G +RPA + VVYG+K +HF+ P FT+ LY+
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQLVVYGIKLIHFERPYFTL-ELYT 236
>gi|327288564|ref|XP_003228996.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Anolis
carolinensis]
Length = 336
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 91/160 (56%), Gaps = 21/160 (13%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
A + L +QEAY++A +G IRP P++ ++C+ F PP+F +E+HC+ E +++L +++
Sbjct: 179 ANLDLKTQEAYELAVRGLIRPMDKSPPLITAVRCLQFAPPEFQLEIHCLHETQQYLRKIV 238
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHW--------------RVQHVIENIAH 295
+++G +L+S+A+CT ++ +R F LE +LLR W RV+ + +++AH
Sbjct: 239 HEIGLELKSSAVCTQVRRVRDGVFTLEDALLRTQWCLPNIQKAIVKSGLRVEELHKSLAH 298
Query: 296 NETLVDKMDPMRPQLQSVNMTDSDSTDGSNVSDGNRTVLE 335
E +P + + TD ++ G + G T+ E
Sbjct: 299 QE------EPWTDE-EGDGKTDGEADGGPGQNKGGNTLWE 331
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L+++L +I ++ + + A + L +QEAY++A +G IRP P++ ++C+ F PP+
Sbjct: 160 LERILSVIQGSHHKALLQYANLDLKTQEAYELAVRGLIRPMDKSPPLITAVRCLQFAPPE 219
Query: 155 FTI 157
F +
Sbjct: 220 FQL 222
>gi|348521894|ref|XP_003448461.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Oreochromis
niloticus]
Length = 330
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ + + SQEAY++A QG + P P++ GL+C+ F+PP+FT+E+ C+ E +++L +++
Sbjct: 184 SNIDMRSQEAYEMAVQGLLGPEGKSTPILTGLRCIRFQPPNFTLELQCLNETQKYLCKIV 243
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQ 309
+++G +LRS A+C ++ R F L+ +L+ HW V++ I L + +
Sbjct: 244 HEIGLELRSTAVCKGVRRTRDGLFTLQDALIHHHWTAADVMQAIQ----LYHSTKKNKKR 299
Query: 310 LQSVNMTDSDSTDGSNVSD 328
++ N T + T N+++
Sbjct: 300 SKAANKTSALQTSEDNITE 318
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L++VL +++ N + + + + SQEAY++A QG + P P++ GL+C+ F+PP+
Sbjct: 165 LERVLSMLEGVNQKTLLTYSNIDMRSQEAYEMAVQGLLGPEGKSTPILTGLRCIRFQPPN 224
Query: 155 FTI 157
FT+
Sbjct: 225 FTL 227
>gi|238231665|ref|NP_001154018.1| probable tRNA pseudouridine synthase 2 [Oncorhynchus mykiss]
gi|225703402|gb|ACO07547.1| Probable tRNA pseudouridine synthase 2 [Oncorhynchus mykiss]
Length = 342
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 68/103 (66%)
Query: 192 VRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYD 251
V +++Q AY++A +G +RP P++ GL+ +HF+PP FT+EV C+ E + +L R++++
Sbjct: 187 VDMSTQGAYELAVKGELRPDGKSPPIMTGLRLLHFQPPHFTLEVQCLNETQRYLCRILHE 246
Query: 252 LGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIA 294
+G +LRS A+C ++ R F ++H+L +HW VI+ I
Sbjct: 247 VGLELRSTAVCKGVRRTRDGPFTIQHALTHQHWTSTDVIQAIG 289
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L++VL ++ + + + V +++Q AY++A +G +RP P++ GL+ +HF+PP
Sbjct: 166 LERVLAMMQGSTQKALLTYSKVDMSTQGAYELAVKGELRPDGKSPPIMTGLRLLHFQPPH 225
Query: 155 FTI 157
FT+
Sbjct: 226 FTL 228
>gi|432959225|ref|XP_004086215.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Oryzias
latipes]
Length = 326
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 68/104 (65%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ V ++SQEAY++A QG + P P++ GL+CVHF+PP FT+EV C+ E +++L +++
Sbjct: 181 SNVDMSSQEAYELAVQGLLGPDGKSAPILTGLRCVHFQPPSFTLEVQCLNETQKYLRKVV 240
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+++G +LRS A+C +++ R F +L R W V++ +
Sbjct: 241 HEIGLELRSTAVCKNVRRTRDGLFTSRQALTRNQWSAADVMQAV 284
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHF 150
++ L++VL +++ N + V ++SQEAY++A QG + P P++ GL+CVHF
Sbjct: 158 TLDKLERVLAMLEGANQKATRMFSNVDMSSQEAYELAVQGLLGPDGKSAPILTGLRCVHF 217
Query: 151 KPPDFTI 157
+PP FT+
Sbjct: 218 QPPSFTL 224
>gi|224994213|ref|NP_663495.3| probable tRNA pseudouridine synthase 2 [Mus musculus]
gi|81879583|sp|Q91WG3.1|TRUB2_MOUSE RecName: Full=Probable tRNA pseudouridine synthase 2
gi|15929724|gb|AAH15285.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli) [Mus
musculus]
gi|54611447|gb|AAH24075.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli) [Mus
musculus]
gi|74191135|dbj|BAE39399.1| unnamed protein product [Mus musculus]
gi|148676471|gb|EDL08418.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli), isoform
CRA_a [Mus musculus]
Length = 331
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 69/100 (69%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L SQEAY++A QG IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKSQEAYEMAVQGVIRPMNKSPMLISGIRCLHFAPPEFLLEVQCMHETQQQLRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L+++A+CT ++ R FGL+ +LLR W + ++ + I
Sbjct: 244 LELKTSAVCTQVRRTRDGFFGLDDALLRTQWDLHNIQDAI 283
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L SQEAY++A QG IRP ++ G++C+HF PP+
Sbjct: 161 LDRILAVIQGSHQKALVMYSNLDLKSQEAYEMAVQGVIRPMNKSPMLISGIRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|47229738|emb|CAG06934.1| unnamed protein product [Tetraodon nigroviridis]
Length = 280
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 70/105 (66%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ V + SQEAY++A +G + P P++ GL+C+HF+PP+FT+EV C+ + +++L R++
Sbjct: 176 SNVDMKSQEAYEMAARGLLGPEGKSPPILKGLRCIHFQPPNFTLEVQCLNDTQKYLRRIV 235
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIA 294
+++G +LRS A+C ++ R F L+ +L + W V++ ++
Sbjct: 236 HEIGLELRSTAMCKGVRRTRDGPFTLKDALTHQQWTASDVMQAVS 280
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L +V+ ++ N + + V + SQEAY++A +G + P P++ GL+C+HF+PP+
Sbjct: 157 LDRVVAMLQGANQKALLMYSNVDMKSQEAYEMAARGLLGPEGKSPPILKGLRCIHFQPPN 216
Query: 155 FTI 157
FT+
Sbjct: 217 FTL 219
>gi|148676472|gb|EDL08419.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli), isoform
CRA_b [Mus musculus]
Length = 213
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 69/100 (69%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L SQEAY++A QG IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 66 LKSQEAYEMAVQGVIRPMNKSPMLISGIRCLHFAPPEFLLEVQCMHETQQQLRKLVHEIG 125
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L+++A+CT ++ R FGL+ +LLR W + ++ + I
Sbjct: 126 LELKTSAVCTQVRRTRDGFFGLDDALLRTQWDLHNIQDAI 165
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L SQEAY++A QG IRP ++ G++C+HF PP+
Sbjct: 43 LDRILAVIQGSHQKALVMYSNLDLKSQEAYEMAVQGVIRPMNKSPMLISGIRCLHFAPPE 102
Query: 155 FTI 157
F +
Sbjct: 103 FLL 105
>gi|26354827|dbj|BAC41040.1| unnamed protein product [Mus musculus]
Length = 331
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 68/100 (68%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L SQEAY++A QG IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKSQEAYEMAVQGVIRPMNKSPMLISGIRCLHFAPPEFLLEVQCMHETQQQLRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L+++A+CT ++ R FGL +LLR W + ++ + I
Sbjct: 244 LELKTSAVCTQVRRTRDGFFGLHDALLRTQWDLHNIQDAI 283
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L SQEAY++A QG IRP ++ G++C+HF PP+
Sbjct: 161 LDRILAVIQGSHQKALVMYSNLDLKSQEAYEMAVQGVIRPMNKSPMLISGIRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|410919785|ref|XP_003973364.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Takifugu
rubripes]
Length = 327
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 70/104 (67%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ V + SQ+AY++A +G + P P++ GL+C+HF+PP+FT+EV C+ + +++L R++
Sbjct: 184 SNVDMKSQDAYEMAARGLLGPDGKSPPILKGLRCIHFQPPNFTLEVQCLNDTQKYLRRIV 243
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+++G +LRS A+C ++ R F L+ +L+ + W +++ +
Sbjct: 244 HEIGLELRSTAVCKGVRRTRDGPFTLKDALVHQQWTAADIMQAV 287
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 42/63 (66%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L++VL +++ N + + V + SQ+AY++A +G + P P++ GL+C+HF+PP+
Sbjct: 165 LERVLAMLEGANQKALLMYSNVDMKSQDAYEMAARGLLGPDGKSPPILKGLRCIHFQPPN 224
Query: 155 FTI 157
FT+
Sbjct: 225 FTL 227
>gi|126297727|ref|XP_001367117.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Monodelphis
domestica]
Length = 323
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ + L +QEAY++A +G IRP ++ G++C+ F PP+F +E+ C+ E ++ L R++
Sbjct: 177 SNLNLKTQEAYEMAVKGLIRPMCKTPMLITGIRCLQFAPPEFLLEIQCMHETQQLLRRMV 236
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHW---RVQHVIENIA 294
+++G +L+SAA+CT ++ R F LE +LLR W +Q I+ +A
Sbjct: 237 HEIGLELKSAAVCTQVRRTRDGVFTLEDALLRTQWDMHSIQKSIQKVA 284
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+ F PP+
Sbjct: 158 LSRILAVIQGSHQKALVMHSNLNLKTQEAYEMAVKGLIRPMCKTPMLITGIRCLQFAPPE 217
Query: 155 F 155
F
Sbjct: 218 F 218
>gi|390347334|ref|XP_003726752.1| PREDICTED: probable tRNA pseudouridine synthase 2-like
[Strongylocentrotus purpuratus]
Length = 329
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 70/113 (61%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
RQ+GV + SQEAY++A +G + P P++ + C F+PP+F +E+ + ++L +
Sbjct: 186 RQSGVDIQSQEAYELAVRGLLHPVGRTNPLLTDITCTMFEPPEFELELTSYADTAQYLRK 245
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLV 300
+I+D+G +L+S+AI T ++ F +EH+LL+KHW++ + I LV
Sbjct: 246 VIHDIGQELKSSAIATQVRRTHDGPFNIEHALLKKHWKLNDIAAAIEECRPLV 298
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 83 WQETVTVPSIKPLQKVLKIIDNNNCLFVH---RQAGVRLNSQEAYDVACQGPIRPALLKE 139
WQ+T T I ++K+ +I N + F RQ+GV + SQEAY++A +G + P
Sbjct: 156 WQKT-TYDHIT-MEKLDRITSNIHRSFQRELIRQSGVDIQSQEAYELAVRGLLHPVGRTN 213
Query: 140 PVVYGLKCVHFKPPDFTI 157
P++ + C F+PP+F +
Sbjct: 214 PLLTDITCTMFEPPEFEL 231
>gi|351697043|gb|EHA99961.1| Putative tRNA pseudouridine synthase 2 [Heterocephalus glaber]
Length = 331
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 75/120 (62%), Gaps = 4/120 (3%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L SQEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LQSQEAYEMAVRGMIRPMDKSPMLISGIRCLHFSPPEFLLEVQCMHETQQQLRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHW---RVQHVIENIAHNETLVDKMDPMRPQL 310
+L+++AIC+ ++ R F L+ +LLR W +Q I+ +A + MRPQL
Sbjct: 244 LELKTSAICSQVRRTRDGLFTLDDALLRTQWDLHSIQAAIQAVA-PRVAAELEKNMRPQL 302
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L+++L +I ++ + + + L SQEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 161 LERILSVIQGSHQKALVMYSSLDLQSQEAYEMAVRGMIRPMDKSPMLISGIRCLHFSPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|326930295|ref|XP_003211283.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Meleagris
gallopavo]
Length = 264
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 77/120 (64%), Gaps = 6/120 (5%)
Query: 170 AVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229
AV++ T++ L + + + + +QEAY++A +G IRP P++ ++C+ F P
Sbjct: 111 AVIQGTNHKALLM------HSNIDMKTQEAYELAVKGLIRPMGKSPPIITAIRCLQFALP 164
Query: 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHV 289
+F +E+HC+ E +++L ++++++G +L+S+A+CT ++ R F L+ +LLR W +Q +
Sbjct: 165 EFQLEIHCLHETQQYLRKVVHEIGLELKSSAVCTQVRRTRDGVFTLDDALLRTQWNLQSI 224
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%)
Query: 93 KPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP 152
+ L+++L +I N + + + + +QEAY++A +G IRP P++ ++C+ F
Sbjct: 104 EKLERILAVIQGTNHKALLMHSNIDMKTQEAYELAVKGLIRPMGKSPPIITAIRCLQFAL 163
Query: 153 PDFTI 157
P+F +
Sbjct: 164 PEFQL 168
>gi|62079245|ref|NP_001014279.1| probable tRNA pseudouridine synthase 2 [Rattus norvegicus]
gi|81883638|sp|Q5XFW2.1|TRUB2_RAT RecName: Full=Probable tRNA pseudouridine synthase 2
gi|54261610|gb|AAH84712.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli) [Rattus
norvegicus]
gi|149039155|gb|EDL93375.1| rCG45466, isoform CRA_a [Rattus norvegicus]
Length = 323
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 65/100 (65%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L SQEAY+ A QG IRP ++ G++C+HF PP+F +EV C+ E ++ L RL++++G
Sbjct: 184 LKSQEAYERAVQGVIRPMNKSPMLIAGIRCLHFAPPEFLLEVQCMHETQQQLRRLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C ++ R FGL+ +LLR W + + + I
Sbjct: 244 LELKTTAVCMQVRRTRDGFFGLDDALLRTQWDLHSIQDAI 283
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L SQEAY+ A QG IRP ++ G++C+HF PP+
Sbjct: 161 LDRILAMIQGSHQKALVMYSNLDLKSQEAYERAVQGVIRPMNKSPMLIAGIRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|149039157|gb|EDL93377.1| rCG45466, isoform CRA_c [Rattus norvegicus]
Length = 205
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 65/100 (65%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L SQEAY+ A QG IRP ++ G++C+HF PP+F +EV C+ E ++ L RL++++G
Sbjct: 66 LKSQEAYERAVQGVIRPMNKSPMLIAGIRCLHFAPPEFLLEVQCMHETQQQLRRLVHEIG 125
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C ++ R FGL+ +LLR W + + + I
Sbjct: 126 LELKTTAVCMQVRRTRDGFFGLDDALLRTQWDLHSIQDAI 165
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L SQEAY+ A QG IRP ++ G++C+HF PP+
Sbjct: 43 LDRILAMIQGSHQKALVMYSNLDLKSQEAYERAVQGVIRPMNKSPMLIAGIRCLHFAPPE 102
Query: 155 FTI 157
F +
Sbjct: 103 FLL 105
>gi|354499495|ref|XP_003511844.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Cricetulus
griseus]
Length = 331
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 3/104 (2%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L SQEAY++A QG IRP ++ G +C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKSQEAYEMAVQGVIRPMNKSPMLITGTRCLHFAPPEFLLEVQCMHETQQQLRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWR---VQHVIENIA 294
+L++AA+CT ++ R F L+ +LLR W +Q I++ A
Sbjct: 244 LELKTAAVCTQVRRTRDGFFRLDDALLRTQWNLHSIQGAIQSAA 287
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L I ++ + + + L SQEAY++A QG IRP ++ G +C+HF PP+
Sbjct: 161 LDRILARIQGSHQKALVMYSNLDLKSQEAYEMAVQGVIRPMNKSPMLITGTRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|344244078|gb|EGW00182.1| putative tRNA pseudouridine synthase 2 [Cricetulus griseus]
Length = 326
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 3/104 (2%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L SQEAY++A QG IRP ++ G +C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 179 LKSQEAYEMAVQGVIRPMNKSPMLITGTRCLHFAPPEFLLEVQCMHETQQQLRKLVHEIG 238
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWR---VQHVIENIA 294
+L++AA+CT ++ R F L+ +LLR W +Q I++ A
Sbjct: 239 LELKTAAVCTQVRRTRDGFFRLDDALLRTQWNLHSIQGAIQSAA 282
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L I ++ + + + L SQEAY++A QG IRP ++ G +C+HF PP+
Sbjct: 156 LDRILARIQGSHQKALVMYSNLDLKSQEAYEMAVQGVIRPMNKSPMLITGTRCLHFAPPE 215
Query: 155 FTI 157
F +
Sbjct: 216 FLL 218
>gi|50757390|ref|XP_415502.1| PREDICTED: probable tRNA pseudouridine synthase 2 [Gallus gallus]
Length = 311
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 78/124 (62%), Gaps = 6/124 (4%)
Query: 170 AVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229
AV++ T++ L + + + + +QEAY++A +G IRP P++ ++C+ F P
Sbjct: 158 AVIQGTNHKALLM------HSHIDMKTQEAYELAVKGLIRPMGKSPPIITAIRCLQFALP 211
Query: 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHV 289
+F +E+HC+ E +++L ++++++G +L+S+A+CT ++ R F L+ +LLR W +Q +
Sbjct: 212 EFQLEIHCLHETQQYLRKVVHEIGLELKSSAVCTQVRRTRDGVFTLDDALLRTQWNLQSI 271
Query: 290 IENI 293
I
Sbjct: 272 RSAI 275
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L+++L +I N + + + + +QEAY++A +G IRP P++ ++C+ F P+
Sbjct: 153 LERILAVIQGTNHKALLMHSHIDMKTQEAYELAVKGLIRPMGKSPPIITAIRCLQFALPE 212
Query: 155 FTI 157
F +
Sbjct: 213 FQL 215
>gi|197127808|gb|ACH44306.1| putative TruB pseudouridine synthase 2 variant 1 [Taeniopygia
guttata]
gi|197127809|gb|ACH44307.1| putative TruB pseudouridine synthase 2 variant 1 [Taeniopygia
guttata]
Length = 342
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 82/132 (62%), Gaps = 6/132 (4%)
Query: 170 AVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229
AV++ T+ L + + + + +QEAY++A +G IRP P++ ++C+ F P
Sbjct: 162 AVIQGTNQKALLM------YSNIDMKTQEAYELAVKGLIRPMGKSPPIITAIRCLQFALP 215
Query: 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHV 289
+F +E+HC+ E +++L ++++++G +L+S+A+CT ++ IR F ++ +L R W +Q +
Sbjct: 216 EFQLEIHCLHETQQYLRKMVHEIGLELKSSAVCTQVRRIRDGVFTVDDALPRTQWNLQSI 275
Query: 290 IENIAHNETLVD 301
E I + + V+
Sbjct: 276 QEAIRNCQLRVE 287
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%)
Query: 93 KPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP 152
+ L+++L +I N + + + + +QEAY++A +G IRP P++ ++C+ F
Sbjct: 155 EKLERILAVIQGTNQKALLMYSNIDMKTQEAYELAVKGLIRPMGKSPPIITAIRCLQFAL 214
Query: 153 PDFTI 157
P+F +
Sbjct: 215 PEFQL 219
>gi|170574392|ref|XP_001892794.1| CG7849-PB [Brugia malayi]
gi|158601468|gb|EDP38374.1| CG7849-PB, putative [Brugia malayi]
Length = 351
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
A V L SQEA+++AR+G RP +L PV+Y +K ++F P FTI +HC+ + + FL I
Sbjct: 187 ANVDLESQEAFELARKGLPRPKVLGAPVIYFIKLIYFNLPHFTINLHCVCKDDNFLQDFI 246
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQ 309
++ L S A C + I+ F HSLL KH+ +++++ N+ E ++ K D P
Sbjct: 247 NEIALSLGSVASCRQLLRIQLGPFNCTHSLLDKHFTLKNILRNMQLCEKII-KYDEKTPD 305
Query: 310 LQSVNMTDSDSTD 322
V T S D
Sbjct: 306 KGIVKATAQSSVD 318
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 114 AGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIG 158
A V L SQEA+++A +G RP +L PV+Y +K ++F P FTI
Sbjct: 187 ANVDLESQEAFELARKGLPRPKVLGAPVIYFIKLIYFNLPHFTIN 231
>gi|296190921|ref|XP_002743431.1| PREDICTED: probable tRNA pseudouridine synthase 2 [Callithrix
jacchus]
Length = 331
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 66/100 (66%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAYD+A +G IRP ++ G++C+HF PP+F IEV C+ E ++ L +L++++G
Sbjct: 184 LKTQEAYDMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLIEVQCMHETQKELRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L+S A+C+ ++ R F L+ +LLR W + + + I
Sbjct: 244 LELKSTAVCSQVRRTRDGIFTLDSALLRTQWDLHSIQDAI 283
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAYD+A +G IRP ++ G++C+HF PP+
Sbjct: 161 LDRILAMIQGSHQKALVMYSNLDLKTQEAYDMAVRGLIRPMNKSPMLITGIRCLHFAPPE 220
Query: 155 FTI 157
F I
Sbjct: 221 FLI 223
>gi|391342048|ref|XP_003745336.1| PREDICTED: uncharacterized protein LOC100905731 [Metaseiulus
occidentalis]
Length = 1646
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 69/114 (60%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
AGV ++SQEAY++A +G +RP P++Y L+C F P FT+EV I + +L L+
Sbjct: 182 AGVDMDSQEAYELASKGLLRPQQPTMPLIYALRCTEFDAPSFTLEVQVINGDDVYLRTLV 241
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKM 303
DL KL++ A ++ R+ F L+ +L++ + V++V++NI VDK+
Sbjct: 242 CDLALKLKTTAALDKMRRTRYGPFTLDMALIKHLYSVENVLDNIEEIRPTVDKL 295
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 114 AGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
AGV ++SQEAY++A +G +RP P++Y L+C F P FT+
Sbjct: 182 AGVDMDSQEAYELASKGLLRPQQPTMPLIYALRCTEFDAPSFTL 225
>gi|348569733|ref|XP_003470652.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Cavia
porcellus]
Length = 386
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 68/100 (68%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L SQEAY++A +G IRP ++ G++C+ F+PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LQSQEAYEMAVRGLIRPMSKSPMLISGVRCLRFEPPEFLLEVQCVHETQQQLRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W +Q++ E I
Sbjct: 244 LELKTTAVCSRVRRTRDGLFTLDDALLRTQWDLQNIQEAI 283
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L+++L +I ++ + + + L SQEAY++A +G IRP ++ G++C+ F+PP+
Sbjct: 161 LERILSVIQGSHQKALVMYSNLDLQSQEAYEMAVRGLIRPMSKSPMLISGVRCLRFEPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|417399122|gb|JAA46591.1| Putative pseudouridine synthase [Desmodus rotundus]
Length = 334
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 66/100 (66%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L RL++++G
Sbjct: 184 LQTQEAYEMAVRGLIRPMNKSPMLIAGIRCLHFAPPEFLLEVQCMHETQKHLRRLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+CT ++ R F L+ +LLR W + + + I
Sbjct: 244 LELKTTAVCTQVRRTRDGFFTLDDALLRTQWDLHSIQDAI 283
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 161 LDRILALIQGSHQKALVLHSNLDLQTQEAYEMAVRGLIRPMNKSPMLIAGIRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|301758776|ref|XP_002915270.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Ailuropoda
melanoleuca]
Length = 343
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 67/102 (65%)
Query: 192 VRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYD 251
V L +QEAYD+A +G IRP +V G++CV F PP+F +EV C+ E ++ L RL+++
Sbjct: 182 VDLQTQEAYDMAVRGLIRPMGKSPMLVTGIRCVSFAPPEFLLEVQCMHETQKQLRRLVHE 241
Query: 252 LGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+G +L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 242 IGLELKTTAVCSQVRRTRDGFFTLDDALLRTQWDLHNIQDAI 283
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + V L +QEAYD+A +G IRP +V G++CV F PP+
Sbjct: 161 LDRILALIQGSHQKALVMYSNVDLQTQEAYDMAVRGLIRPMGKSPMLVTGIRCVSFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|339237323|ref|XP_003380216.1| putative tRNA pseudouridine synthase 2 [Trichinella spiralis]
gi|316976983|gb|EFV60168.1| putative tRNA pseudouridine synthase 2 [Trichinella spiralis]
Length = 383
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 65/104 (62%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
AGV L SQ+A+++A QG +RP P+ Y L V F+ P FT++V C+ E E L L+
Sbjct: 158 AGVDLQSQKAFELASQGLVRPREDSFPIFYKLCVVQFRKPFFTMKVKCVNEDEASLKTLV 217
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+++G ++ A C SI+ +R F L+H+LL K +Q++I N+
Sbjct: 218 HEVGLSAKTTAACVSIRRVRHGHFSLQHALLVKQISLQNIINNL 261
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L +VL + NN AGV L SQ+A+++A QG +RP P+ Y L V F+ P
Sbjct: 139 LNRVLAKLTANNLKAAFDSAGVDLQSQKAFELASQGLVRPREDSFPIFYKLCVVQFRKPF 198
Query: 155 FTI 157
FT+
Sbjct: 199 FTM 201
>gi|281349461|gb|EFB25045.1| hypothetical protein PANDA_003202 [Ailuropoda melanoleuca]
Length = 330
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 67/102 (65%)
Query: 192 VRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYD 251
V L +QEAYD+A +G IRP +V G++CV F PP+F +EV C+ E ++ L RL+++
Sbjct: 182 VDLQTQEAYDMAVRGLIRPMGKSPMLVTGIRCVSFAPPEFLLEVQCMHETQKQLRRLVHE 241
Query: 252 LGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+G +L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 242 IGLELKTTAVCSQVRRTRDGFFTLDDALLRTQWDLHNIQDAI 283
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + V L +QEAYD+A +G IRP +V G++CV F PP+
Sbjct: 161 LDRILALIQGSHQKALVMYSNVDLQTQEAYDMAVRGLIRPMGKSPMLVTGIRCVSFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|410979346|ref|XP_003996046.1| PREDICTED: LOW QUALITY PROTEIN: probable tRNA pseudouridine
synthase 2 [Felis catus]
Length = 333
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAYD+A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 186 LQTQEAYDMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLLEVQCMHETQKQLRKLVHEIG 245
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIEN 292
+L++ A+C+ ++ R F L+ +LLR W + H I+N
Sbjct: 246 LELKTTAVCSQVRRTRDGFFTLDDALLRTQWDM-HSIQN 283
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAYD+A +G IRP ++ G++C+HF PP+
Sbjct: 163 LDRILALIQGSHQKALVMYSNLDLQTQEAYDMAVRGLIRPMNKSPMLITGIRCLHFAPPE 222
Query: 155 FTI 157
F +
Sbjct: 223 FLL 225
>gi|355726460|gb|AES08879.1| TruB pseudouridine synthase-like protein 2 [Mustela putorius furo]
Length = 330
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP +V ++C+HF PP+F I+V C+ E ++ L RL++++G
Sbjct: 184 LQTQEAYEMAVRGLIRPMNKSPMLVTAIQCIHFAPPEFLIQVQCMHETQKQLRRLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIEN 292
+L++ A+C+ ++ R F L+ +LLR HW + H IE+
Sbjct: 244 LELKTTAVCSQVRRTRDGFFTLDDALLRTHWDL-HSIED 281
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP +V ++C+HF PP+
Sbjct: 161 LDRILALIQGSHQKALVMYSSLDLQTQEAYEMAVRGLIRPMNKSPMLVTAIQCIHFAPPE 220
Query: 155 FTI 157
F I
Sbjct: 221 FLI 223
>gi|402593342|gb|EJW87269.1| hypothetical protein WUBG_01819 [Wuchereria bancrofti]
Length = 351
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
A V L SQEA+++AR+G RP +L PV+Y +K +HF P FTI +HC+ + + FL I
Sbjct: 187 ANVDLESQEAFELARKGLPRPKVLGAPVIYFIKLIHFHLPHFTINLHCVCKNDNFLQDFI 246
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQ 309
++ L S A C + + F HSLL KH+ +++++ N+ E ++ K D
Sbjct: 247 NEIALSLGSVASCRQLLRTQLGPFNCTHSLLDKHFTLKNILRNMQLCEKII-KYDEKTLD 305
Query: 310 LQSVNMTDSDSTD 322
+ V T S D
Sbjct: 306 KEIVKATAQSSVD 318
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 114 AGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIG 158
A V L SQEA+++A +G RP +L PV+Y +K +HF P FTI
Sbjct: 187 ANVDLESQEAFELARKGLPRPKVLGAPVIYFIKLIHFHLPHFTIN 231
>gi|431898868|gb|ELK07238.1| Putative tRNA pseudouridine synthase 2 [Pteropus alecto]
Length = 334
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L RL++++G
Sbjct: 184 LQTQEAYEMAVRGSIRPMNKSPMLITGIRCLHFAPPEFLLEVQCMHETQKQLRRLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHW---RVQHVIENIA 294
+L+S A+C+ ++ R F L+ +LLR W +Q I+ A
Sbjct: 244 LELKSTAVCSQVRRTRDGCFTLDDALLRTQWDLHSIQGAIQAAA 287
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 161 LDRILAVIQGSHQKALVMYSNLDLQTQEAYEMAVRGSIRPMNKSPMLITGIRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|432095376|gb|ELK26575.1| Putative tRNA pseudouridine synthase 2 [Myotis davidii]
Length = 330
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 66/100 (66%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L RL++++G
Sbjct: 184 LQTQEAYEMAVKGLIRPMNKSPMLITGVRCLHFAPPEFLLEVQCMHETQKQLRRLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F LE +LLR W + + + I
Sbjct: 244 LELKTTAVCSHVRRTRDGFFTLEDALLRTQWDLHSIQDAI 283
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 161 LDRILAVIQGSHQKALVTYSNLDLQTQEAYEMAVKGLIRPMNKSPMLITGVRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|149738265|ref|XP_001500889.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Equus
caballus]
Length = 331
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 66/100 (66%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L RL++++G
Sbjct: 184 LQTQEAYEMAVRGLIRPTDKSPMLITGIRCLHFAPPEFLLEVQCMHETQKQLRRLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + + + I
Sbjct: 244 LELKTTALCSQVRRTRDGFFTLDDALLRTQWDLHSIQDAI 283
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 161 LDRILALIQGSHQKALVMYSSLDLQTQEAYEMAVRGLIRPTDKSPMLITGIRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|403299724|ref|XP_003940626.1| PREDICTED: probable tRNA pseudouridine synthase 2 [Saimiri
boliviensis boliviensis]
Length = 331
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 66/100 (66%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F IEV C+ E ++ L +L++++G
Sbjct: 184 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLIEVRCMHETQKELRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + + + I
Sbjct: 244 LELKTTAVCSQVRRTRDGIFTLDSALLRTQWDLHSIQDAI 283
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 161 LDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPE 220
Query: 155 FTI 157
F I
Sbjct: 221 FLI 223
>gi|311246546|ref|XP_001928454.2| PREDICTED: probable tRNA pseudouridine synthase 2 [Sus scrofa]
Length = 349
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 65/100 (65%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A G IRP ++ G++C+ F PP+F +EV C+ E ++ L RL++++G
Sbjct: 202 LQTQEAYEMAVSGVIRPMNKSPMLITGIRCLQFAPPEFLLEVQCMHETQKQLRRLVHEIG 261
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L+S+A+CT ++ R F L+ +LLR W + + + I
Sbjct: 262 LELKSSAVCTQVRRTRDGFFTLDDALLRTQWDLHSIQDAI 301
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A G IRP ++ G++C+ F PP+
Sbjct: 179 LDRILALIQGSHQKALVMYSNLDLQTQEAYEMAVSGVIRPMNKSPMLITGIRCLQFAPPE 238
Query: 155 FTI 157
F +
Sbjct: 239 FLL 241
>gi|345806018|ref|XP_850756.2| PREDICTED: LOW QUALITY PROTEIN: probable tRNA pseudouridine
synthase 2 isoform 1 [Canis lupus familiaris]
Length = 330
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 66/100 (66%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAYD+A +G IRP +V G++C++F PP+F +EV C+ E ++ L RL++++G
Sbjct: 184 LQTQEAYDMAVRGLIRPMDKSPMLVTGIRCLYFAPPEFLMEVQCMHETQKQLRRLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + + + I
Sbjct: 244 LELKTTAVCSQVRRTRDGFFTLDDALLRTQWDLHSIQDAI 283
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAYD+A +G IRP +V G++C++F PP+
Sbjct: 161 LDRILALIQGSHQKALVMYSNLDLQTQEAYDMAVRGLIRPMDKSPMLVTGIRCLYFAPPE 220
Query: 155 F 155
F
Sbjct: 221 F 221
>gi|402896395|ref|XP_003911287.1| PREDICTED: probable tRNA pseudouridine synthase 2 isoform 2 [Papio
anubis]
Length = 275
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 128 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLLEVQCMHETQKELRKLVHEIG 187
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI--AHNETLVDKMDPMRPQLQ 311
+L++ A+C+ ++ R F L+ +LLR W + ++ + I A + + + PQL
Sbjct: 188 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLHNIQDAIRAAAPQVAAELEKSLGPQLD 247
Query: 312 SVNM 315
+ +
Sbjct: 248 TKEL 251
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 105 LDRILAMIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPE 164
Query: 155 FTI 157
F +
Sbjct: 165 FLL 167
>gi|402896393|ref|XP_003911286.1| PREDICTED: probable tRNA pseudouridine synthase 2 isoform 1 [Papio
anubis]
Length = 331
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLLEVQCMHETQKELRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI--AHNETLVDKMDPMRPQLQ 311
+L++ A+C+ ++ R F L+ +LLR W + ++ + I A + + + PQL
Sbjct: 244 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLHNIQDAIRAAAPQVAAELEKSLGPQLD 303
Query: 312 SVNM 315
+ +
Sbjct: 304 TKEL 307
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 161 LDRILAMIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|355567435|gb|EHH23776.1| Putative tRNA pseudouridine synthase 2 [Macaca mulatta]
Length = 331
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLLEVQCMHETQKELRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 244 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLHNIQDAI 283
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 161 LDRILAMIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|312077174|ref|XP_003141187.1| hypothetical protein LOAG_05602 [Loa loa]
Length = 351
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
A V L SQEA+++AR+G RP +L PV+Y +K V F P FTI +HC+ + + FL I
Sbjct: 187 ANVDLASQEAFELARKGLPRPKVLGTPVIYFIKLVRFHLPHFTINLHCVCKDDGFLQDFI 246
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIEN-------IAHNETLVDK 302
++ L S A C + R F HSLL KH+ +++++ N I H+E +DK
Sbjct: 247 NEVALSLGSVASCRQLLRTRLGPFDYTHSLLDKHFTLKNILRNMQLCQKIIEHDEKTLDK 306
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 114 AGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
A V L SQEA+++A +G RP +L PV+Y +K V F P FTI
Sbjct: 187 ANVDLASQEAFELARKGLPRPKVLGTPVIYFIKLVRFHLPHFTI 230
>gi|355768423|gb|EHH62718.1| Putative tRNA pseudouridine synthase 2 [Macaca fascicularis]
Length = 311
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 164 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLLEVQCMHETQKELRKLVHEIG 223
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 224 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLHNIQDAI 263
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 141 LDRILAMIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPE 200
Query: 155 FTI 157
F +
Sbjct: 201 FLL 203
>gi|297685468|ref|XP_002820320.1| PREDICTED: probable tRNA pseudouridine synthase 2 [Pongo abelii]
Length = 349
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 200 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLLEVQCMHETQKELRKLVHEIG 259
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 260 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 299
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L II ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 177 LDRILAIIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPE 236
Query: 155 FTI 157
F +
Sbjct: 237 FLL 239
>gi|109110171|ref|XP_001111888.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Macaca
mulatta]
Length = 331
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C+HF PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLLEVQCMHETQKELRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 244 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLHNIQDAI 283
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+HF PP+
Sbjct: 161 LDRILAMIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|221043848|dbj|BAH13601.1| unnamed protein product [Homo sapiens]
Length = 275
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 128 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIG 187
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+CT ++ R F L+ +LLR W + ++ + I
Sbjct: 188 LELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 227
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F PP+
Sbjct: 105 LDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPE 164
Query: 155 F 155
F
Sbjct: 165 F 165
>gi|426226145|ref|XP_004007210.1| PREDICTED: probable tRNA pseudouridine synthase 2 [Ovis aries]
Length = 331
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A G IRP ++ G++C+ F PP+F +EV C+ E ++ L RL++++G
Sbjct: 184 LQTQEAYEMAVSGVIRPMNKSPMLITGIRCLQFAPPEFLLEVQCMHETQKQLRRLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHW---RVQHVIENIA 294
+L+S A+CT ++ R F L+ +LLR W +Q I+ A
Sbjct: 244 LELKSTAVCTQVRRTRDGFFTLDDALLRTQWDLPSIQGAIQAAA 287
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A G IRP ++ G++C+ F PP+
Sbjct: 161 LDRILAVIQGSHQKALVTYSNLDLQTQEAYEMAVSGVIRPMNKSPMLITGIRCLQFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|7661556|ref|NP_056494.1| probable tRNA pseudouridine synthase 2 [Homo sapiens]
gi|74739707|sp|O95900.1|TRUB2_HUMAN RecName: Full=Probable tRNA pseudouridine synthase 2
gi|4406691|gb|AAD20059.1| Unknown [Homo sapiens]
gi|7023544|dbj|BAA92001.1| unnamed protein product [Homo sapiens]
gi|12655199|gb|AAH01457.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli) [Homo
sapiens]
gi|119608176|gb|EAW87770.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli), isoform
CRA_a [Homo sapiens]
gi|119608179|gb|EAW87773.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli), isoform
CRA_a [Homo sapiens]
gi|123982682|gb|ABM83082.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli) [synthetic
construct]
gi|123997351|gb|ABM86277.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli) [synthetic
construct]
Length = 331
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+CT ++ R F L+ +LLR W + ++ + I
Sbjct: 244 LELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 283
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F PP+
Sbjct: 161 LDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|426253951|ref|XP_004020652.1| PREDICTED: probable tRNA pseudouridine synthase 2-like [Ovis aries]
Length = 296
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 60/91 (65%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A G IRP ++ G++C+ F PP+F +EV C+ E ++ L RL++++G
Sbjct: 149 LQTQEAYEMAVSGVIRPMNKSPMLITGIRCLQFAPPEFLLEVQCMHETQKQLRRLVHEIG 208
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHW 284
+L+S A+CT ++ R F L+ +LLR W
Sbjct: 209 LELKSTAVCTQVRRTRDGFFTLDDALLRTQW 239
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A G IRP ++ G++C+ F PP+
Sbjct: 126 LDRILAVIQGSHQKALVMYSNLDLQTQEAYEMAVSGVIRPMNKSPMLITGIRCLQFAPPE 185
Query: 155 FTI 157
F +
Sbjct: 186 FLL 188
>gi|332230146|ref|XP_003264248.1| PREDICTED: probable tRNA pseudouridine synthase 2 isoform 2
[Nomascus leucogenys]
Length = 275
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 128 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCVHETQKELRKLVHEIG 187
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 188 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 227
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 93 KPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP 152
+ L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F P
Sbjct: 103 EKLDRILAMIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAP 162
Query: 153 PDF 155
P+F
Sbjct: 163 PEF 165
>gi|332230144|ref|XP_003264247.1| PREDICTED: probable tRNA pseudouridine synthase 2 isoform 1
[Nomascus leucogenys]
Length = 331
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCVHETQKELRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 244 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 283
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F PP+
Sbjct: 161 LDRILAMIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|440894667|gb|ELR47067.1| Putative tRNA pseudouridine synthase 2 [Bos grunniens mutus]
Length = 331
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 64/100 (64%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A G IRP ++ G++C+ F PP+F +EV C+ E ++ L RL++++G
Sbjct: 184 LQTQEAYEMAVSGVIRPMNKSPMLITGIRCLQFAPPEFLLEVQCMHETQKQLRRLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L+S A+C ++ R F L+ +LLR W + ++ + I
Sbjct: 244 LELKSTAVCAQVRRTRDGFFTLDDALLRTQWDLPNIQDAI 283
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A G IRP ++ G++C+ F PP+
Sbjct: 161 LDRILAVIQGSHQKALVTYSNLDLQTQEAYEMAVSGVIRPMNKSPMLITGIRCLQFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|344271311|ref|XP_003407483.1| PREDICTED: LOW QUALITY PROTEIN: probable tRNA pseudouridine
synthase 2-like [Loxodonta africana]
Length = 313
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ ++C HF PP+F +EV C+ E ++ L RL++++G
Sbjct: 184 LKTQEAYEMAVRGLIRPTNKSPMLITSIRCRHFAPPEFLLEVQCMHETQKQLRRLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI--AHNETLVDKMDPMRPQLQ 311
+L++ A+C+ ++ R F L+ +LLR W + + + I A + +RP L
Sbjct: 244 LELKTTAVCSQVRRTRDGFFMLDDALLRTQWDLHSIQDAIQAAAPRVAAELEKSLRPVLG 303
Query: 312 SVNMTD 317
+ + D
Sbjct: 304 TXQLPD 309
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ ++C HF PP+
Sbjct: 161 LDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPTNKSPMLITSIRCRHFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|332832906|ref|XP_520290.3| PREDICTED: probable tRNA pseudouridine synthase 2 isoform 2 [Pan
troglodytes]
Length = 275
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 128 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIG 187
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 188 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 227
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 93 KPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP 152
+ L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F P
Sbjct: 103 EKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAP 162
Query: 153 PDF 155
P+F
Sbjct: 163 PEF 165
>gi|397503524|ref|XP_003822372.1| PREDICTED: probable tRNA pseudouridine synthase 2 isoform 2 [Pan
paniscus]
Length = 275
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 128 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIG 187
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 188 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 227
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F PP+
Sbjct: 105 LDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPE 164
Query: 155 F 155
F
Sbjct: 165 F 165
>gi|114626924|ref|XP_001156841.1| PREDICTED: probable tRNA pseudouridine synthase 2 isoform 1 [Pan
troglodytes]
gi|410209874|gb|JAA02156.1| TruB pseudouridine (psi) synthase homolog 2 [Pan troglodytes]
gi|410209876|gb|JAA02157.1| TruB pseudouridine (psi) synthase homolog 2 [Pan troglodytes]
gi|410263878|gb|JAA19905.1| TruB pseudouridine (psi) synthase homolog 2 [Pan troglodytes]
gi|410289518|gb|JAA23359.1| TruB pseudouridine (psi) synthase homolog 2 [Pan troglodytes]
Length = 331
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 244 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 283
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F PP+
Sbjct: 161 LDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|397503522|ref|XP_003822371.1| PREDICTED: probable tRNA pseudouridine synthase 2 isoform 1 [Pan
paniscus]
Length = 331
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 244 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 283
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F PP+
Sbjct: 161 LDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|426363193|ref|XP_004048730.1| PREDICTED: probable tRNA pseudouridine synthase 2 isoform 2
[Gorilla gorilla gorilla]
Length = 275
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 128 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIG 187
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 188 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 227
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F PP+
Sbjct: 105 LDRILAVIQGSHQKSLVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPE 164
Query: 155 F 155
F
Sbjct: 165 F 165
>gi|426363191|ref|XP_004048729.1| PREDICTED: probable tRNA pseudouridine synthase 2 isoform 1
[Gorilla gorilla gorilla]
Length = 331
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 67/100 (67%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 184 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIG 243
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
+L++ A+C+ ++ R F L+ +LLR W + ++ + I
Sbjct: 244 LELKTTAVCSQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 283
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F PP+
Sbjct: 161 LDRILAVIQGSHQKSLVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPE 220
Query: 155 FTI 157
F +
Sbjct: 221 FLL 223
>gi|351702074|gb|EHB04993.1| Putative tRNA pseudouridine synthase 2 [Heterocephalus glaber]
Length = 323
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVY-GLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L SQEAY++A +G IRP + K P+++ G++C+HF PP+F +EV C+ E ++ L +L++++
Sbjct: 170 LQSQEAYEMAVRGVIRP-MDKSPMLFSGIRCLHFSPPEFLLEVQCMQETQQQLRKLVHEI 228
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHW 284
G +L++ A+C + R F L+ +LLR W
Sbjct: 229 GLELKTTAVCLQVWRTRDGLFMLDDALLRTQW 260
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVY-GLKCVHFKPP 153
L+++L +I ++ + + + L SQEAY++A +G IRP + K P+++ G++C+HF PP
Sbjct: 147 LEQILSVIQGSHQKALVMYSNLDLQSQEAYEMAVRGVIRP-MDKSPMLFSGIRCLHFSPP 205
Query: 154 DFTI 157
+F +
Sbjct: 206 EFLL 209
>gi|324518678|gb|ADY47172.1| tRNA pseudouridine synthase 2 [Ascaris suum]
Length = 353
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 64/113 (56%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
A V L SQEA+++A +G R +L P+VYG+ FK P F++ ++C+ E + FL I
Sbjct: 187 ANVDLQSQEAFELACKGLPRAKILGTPIVYGISLNSFKAPHFSLTLNCVSETDSFLRDFI 246
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK 302
++ L + A C + C R F EHSLL KH+ + ++ N+ +++K
Sbjct: 247 REIAISLGTTASCRRLLCSRIGPFDAEHSLLDKHFTLSNIFTNMRLCRGIIEK 299
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
+QK+L + A V L SQEA+++AC+G R +L P+VYG+ FK P
Sbjct: 168 MQKLLSRVQAQYKRLAFELANVDLQSQEAFELACKGLPRAKILGTPIVYGISLNSFKAPH 227
Query: 155 FTI 157
F++
Sbjct: 228 FSL 230
>gi|198432855|ref|XP_002130921.1| PREDICTED: similar to TruB pseudouridine (psi) synthase homolog 2
isoform 1 [Ciona intestinalis]
Length = 326
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
R +G+ L+S +AY++A +G +RP EPV+ LK P F++EV C+ + F+ +
Sbjct: 186 RDSGLELSSHKAYELASKGLLRPMEGNEPVIVDLKLSSLNLPHFSLEVTCLNDTCGFIRK 245
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLE--HSLLRKHWRVQHVIENIAH-NETLVDKMD 304
L++++ +LRS+AICT +Q R + F + H+LL V + I +I H E ++
Sbjct: 246 LVHEVAAELRSSAICTKLQRQRVSVFSHDNKHTLLSHQMNVNNFINSIHHYKEAFDSQLA 305
Query: 305 PMRPQLQSVNMTDSDSTDGSN 325
+ L+ N+ D+ SN
Sbjct: 306 NKKKYLRKENLMDNCEVQFSN 326
>gi|198432857|ref|XP_002130935.1| PREDICTED: similar to TruB pseudouridine (psi) synthase homolog 2
isoform 2 [Ciona intestinalis]
Length = 284
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
R +G+ L+S +AY++A +G +RP EPV+ LK P F++EV C+ + F+ +
Sbjct: 144 RDSGLELSSHKAYELASKGLLRPMEGNEPVIVDLKLSSLNLPHFSLEVTCLNDTCGFIRK 203
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLE--HSLLRKHWRVQHVIENIAH-NETLVDKMD 304
L++++ +LRS+AICT +Q R + F + H+LL V + I +I H E ++
Sbjct: 204 LVHEVAAELRSSAICTKLQRQRVSVFSHDNKHTLLSHQMNVNNFINSIHHYKEAFDSQLA 263
Query: 305 PMRPQLQSVNMTDSDSTDGSN 325
+ L+ N+ D+ SN
Sbjct: 264 NKKKYLRKENLMDNCEVQFSN 284
>gi|341900289|gb|EGT56224.1| hypothetical protein CAEBREN_09720 [Caenorhabditis brenneri]
Length = 213
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
R A V L S EA+++AR+G R L +VY ++ FK P F+I C GE +E L +
Sbjct: 50 RHANVDLESSEAFELARRGVPRAQLPGAQIVYSIELNWFKSPRFSITAQCSGEDDEMLRK 109
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLV 300
LI +G L + ++ +Q F FG +++LL K +Q+++ NI N T++
Sbjct: 110 LIEHIGANLGTESLTIRLQRQNFGPFGGDNTLLEKQINLQNIVRNIQLNRTIL 162
>gi|392899334|ref|NP_501102.3| Protein Y43B11AR.3 [Caenorhabditis elegans]
gi|351051217|emb|CCD74051.1| Protein Y43B11AR.3 [Caenorhabditis elegans]
Length = 346
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
R A V + S EA+++AR+G R L +VY + F+ P F++ C GE +E L +
Sbjct: 183 RHANVDMESSEAFELARRGVPRAQLPGSQIVYSIDLNWFRSPKFSVTTQCSGEDDEMLRQ 242
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMR 307
LI +G+ L + + +Q F FG +++LL K +Q++ NI N ++ + +
Sbjct: 243 LIEHIGSNLGTESTTIRLQRQNFGPFGSDNALLEKQINLQNIARNIILNRKIITS-ESVN 301
Query: 308 PQLQSVNMTDSDSTDGSNVSDG 329
++ S ++ DST + DG
Sbjct: 302 KKIVSESVEPEDSTKNREIFDG 323
>gi|341888776|gb|EGT44711.1| hypothetical protein CAEBREN_07060 [Caenorhabditis brenneri]
Length = 213
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 185 FVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEF 244
F H A V L S EA+++AR+G R L +VY ++ FK P F+I C GE +E
Sbjct: 49 FQH--ANVDLESSEAFELARRGVPRAQLPGAQIVYSIELNWFKSPRFSITAQCSGEDDEM 106
Query: 245 LIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLV 300
L +LI +G L + ++ +Q F FG +++LL K +Q+++ NI N T++
Sbjct: 107 LRKLIEHIGANLGTESLTIRLQRQNFGPFGGDNTLLEKQINLQNIVRNIQLNRTIL 162
>gi|268535886|ref|XP_002633078.1| Hypothetical protein CBG05761 [Caenorhabditis briggsae]
Length = 338
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
R A V L S EA+++AR+G R L ++Y + F+ P F++ C GE +E L R
Sbjct: 174 RHANVDLESSEAFELARRGTPRAQLPGAQIIYSIDLNWFRSPRFSVTAQCSGEDDEMLRR 233
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLV 300
LI +G+ L + IQ F FG E++LL K +Q+++ NI N ++
Sbjct: 234 LIEHIGSNLGMESAIIRIQRQNFGPFGSENALLEKQINLQNIVRNIQLNRGIL 286
>gi|308491136|ref|XP_003107759.1| hypothetical protein CRE_12643 [Caenorhabditis remanei]
gi|308249706|gb|EFO93658.1| hypothetical protein CRE_12643 [Caenorhabditis remanei]
Length = 338
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
R A V L S EA+++AR+G R L +VY + F+ P F+I C GE +E L +
Sbjct: 174 RHANVDLESSEAFELARRGVPRAQLPGAQIVYSIDLNWFRSPRFSITAQCSGEDDEMLRQ 233
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMR 307
L+ ++G L + +Q F F + SLL K +Q++I NI N ++ + +
Sbjct: 234 LVENIGINLGLESATIRLQRQNFGPFKSDDSLLEKQINLQNIIRNIQLNRRIIASSESID 293
Query: 308 PQLQSVNMTDSDSTDGSNVSDG 329
++ + + + S V DG
Sbjct: 294 KKVVTESTENEFSNKIREVFDG 315
>gi|119608178|gb|EAW87772.1| TruB pseudouridine (psi) synthase homolog 2 (E. coli), isoform
CRA_c [Homo sapiens]
Length = 177
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 53/73 (72%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A +G IRP ++ G++C++F PP+F +EV C+ E ++ L +L++++G
Sbjct: 103 LKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIG 162
Query: 254 TKLRSAAICTSIQ 266
+L++ A+CT ++
Sbjct: 163 LELKTTAVCTQVR 175
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 93 KPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP 152
+ L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C++F P
Sbjct: 78 EKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAP 137
Query: 153 PDF 155
P+F
Sbjct: 138 PEF 140
>gi|149487716|ref|XP_001519726.1| PREDICTED: probable tRNA pseudouridine synthase 2-like
[Ornithorhynchus anatinus]
Length = 239
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 62/101 (61%), Gaps = 6/101 (5%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L +Q AY++A +G IRP + K P+ + G++C+ F P ++ C+ E ++ L R+++++
Sbjct: 68 LKTQGAYELAVKGLIRP-MEKTPMPILGIRCLEFSLP----KIQCMNETQQRLRRVVHEI 122
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
G +L+S A+CT ++ R F ++ +L R W + V E I
Sbjct: 123 GLELKSTAVCTQVRRTRDGAFNVDDALPRTRWDQRSVQETI 163
>gi|226478798|emb|CAX72894.1| putative tRNA pseudouridine synthase 2 [Schistosoma japonicum]
Length = 415
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 216 PVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGL 275
P V GL+C+ F PP FTIE+ E +FLI L+ +LG KLR+A + + + +R
Sbjct: 258 PYVNGLRCIDFDPPFFTIEIQVAHETLKFLIDLVANLGLKLRTATLLSKARRVRHGPLTA 317
Query: 276 EHSLLRKH 283
E+SLL KH
Sbjct: 318 ENSLLMKH 325
>gi|358335432|dbj|GAA39363.2| probable tRNA pseudouridine synthase 2 [Clonorchis sinensis]
Length = 313
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 216 PVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGL 275
P V ++C F PP FT+E+ E +FLI L+ ++G KLR+A + +S + +R + L
Sbjct: 172 PYVNSIRCAVFDPPFFTLEIQVAYETLDFLINLVANIGPKLRTATLLSSARRVRHGRLTL 231
Query: 276 EHSLLRKHWRV-QHVIENIAHNETLVDKMD 304
E +LL KH V + V++++++ T K D
Sbjct: 232 EDALLMKHCTVPEQVLQSLSNYMTKELKED 261
>gi|256085076|ref|XP_002578750.1| hypothetical protein [Schistosoma mansoni]
Length = 316
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 216 PVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGL 275
P V ++CV F PP FTIE+ I E +F I L+ +LG KLR+A + + + +R
Sbjct: 224 PYVNAMRCVDFDPPFFTIEIQVIHETLKFFIDLVGNLGPKLRTATLLSKARRVRHGPITA 283
Query: 276 EHSLLRKH 283
E+SLL KH
Sbjct: 284 ENSLLMKH 291
>gi|393912409|gb|EFO22879.2| hypothetical protein LOAG_05602 [Loa loa]
Length = 205
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
A V L SQEA+++AR+G RP +L PV+Y +K V F P FTI +HC+ + + FL I
Sbjct: 126 ANVDLASQEAFELARKGLPRPKVLGTPVIYFIKLVRFHLPHFTINLHCVCKDDGFLQDFI 185
Query: 250 YDLGTKL 256
++ L
Sbjct: 186 NEVALSL 192
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 114 AGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
A V L SQEA+++A +G RP +L PV+Y +K V F P FTI
Sbjct: 126 ANVDLASQEAFELARKGLPRPKVLGTPVIYFIKLVRFHLPHFTI 169
>gi|115660657|ref|XP_001201653.1| PREDICTED: probable tRNA pseudouridine synthase 1-like
[Strongylocentrotus purpuratus]
Length = 280
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 190 AGVRLNSQEAYDIARQGP-IRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++++ + D+A +G ++P + VY L C F+PPDF I+VHC G + ++ +L
Sbjct: 166 SALKVDGERMSDLAARGEDVQPKPARPVKVYSLHCQGFQPPDFDIKVHCGGGF--YVRKL 223
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGLE-HSLLRKHWRVQHVIENIA--HN 296
I+D+G L + A T + F LE H+L + W ++ + + HN
Sbjct: 224 IHDVGKSLGTCAFMTGLCRTEQGYFKLEQHALPEEKWTLKDITRALEEFHN 274
>gi|410929285|ref|XP_003978030.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Takifugu
rubripes]
Length = 281
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 207 PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQ 266
P RP VY L FKPP FT++V C G + ++ L+ DLG L S A +
Sbjct: 198 PARPV-----TVYNLDLKEFKPPHFTLDVECGGGF--YVRSLVDDLGKALSSCAHVKELI 250
Query: 267 CIRFAQFGLE-HSLLRKHWRVQHVIENI 293
+ +F LE H+L +HW +H++ ++
Sbjct: 251 RTKQDRFTLEHHALHEEHWTFEHIMRSL 278
>gi|325294578|ref|YP_004281092.1| tRNA pseudouridine synthase B [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065026|gb|ADY73033.1| tRNA pseudouridine synthase B [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 276
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 15/126 (11%)
Query: 190 AGVRLNSQEAYDIARQGP---IRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLI 246
+ +R+ + AY++AR+G ++P +K +Y LK + F PDF +EV C ++
Sbjct: 112 SAIRIKGKRAYELARKGEKVELKPRKIK---IYSLKLISFNYPDFELEVCC--SSGTYIR 166
Query: 247 RLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL-LRKHWRVQHVIENIAHNETLVDKMDP 305
L+YD+G L AA+ T ++ + + ++ ++ L K R ENI +DK+
Sbjct: 167 SLVYDIGRALGCAAVVTELRRTKVGKITIDKAISLSKLNR-----ENIKEFLIPIDKLLD 221
Query: 306 MRPQLQ 311
M P+++
Sbjct: 222 M-PEMK 226
>gi|126273398|ref|XP_001377558.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Monodelphis
domestica]
Length = 475
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY L F+PP FT++V C G + ++ L
Sbjct: 221 SALKKDGQRLSTLMKKGEVVEAKPARPVTVYSLSLQKFQPPLFTLDVECGGGF--YIRSL 278
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAH------NETLVD 301
+ D+G +L S A + + F L EH+L W + + +++ H E V
Sbjct: 279 VSDIGKELSSCATVQELTRTKQGPFTLEEHALREDKWTIDGIAQSLEHCMPLLSVEPSVK 338
Query: 302 KMDPMRPQLQSVNMTDSDS 320
K+ ++Q+V+ D S
Sbjct: 339 KLKTEDSKVQAVSSEDKTS 357
>gi|345324080|ref|XP_001513872.2| PREDICTED: probable tRNA pseudouridine synthase 1-like
[Ornithorhynchus anatinus]
Length = 303
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 209 RPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCI 268
+PA ++ VY L F+PP FT++V C G + ++ L+ D+G +L S A +
Sbjct: 182 KPA--RQVTVYSLSLQKFQPPLFTLDVECGGGF--YIRSLVSDIGKELSSCASVQELTRT 237
Query: 269 RFAQFGL-EHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQLQSVNMTDS 318
+ F L EH+L W + + +++ + +L+ P P L+ DS
Sbjct: 238 KQGPFTLEEHALREDKWTIDAIAQSLEYGTSLL----PQEPALEKFKEEDS 284
>gi|350596315|ref|XP_003122248.3| PREDICTED: probable tRNA pseudouridine synthase 2-like [Sus scrofa]
Length = 387
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 21/100 (21%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLG 253
L +QEAY++A G IRP ++ G++C+ F PP+F +EV C+ E ++ L RL
Sbjct: 175 LQTQEAYEMAVSGVIRPMNKSPMLITGIRCLQFAPPEFLLEVQCMHETQKQLRRLD---- 230
Query: 254 TKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
F L+ +LLR W + + + I
Sbjct: 231 -----------------GFFTLDDALLRTQWDLHSIQDAI 253
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A G IRP ++ G++C+ F PP+
Sbjct: 152 LDRILALIQGSHQKALVMYSNLDLQTQEAYEMAVSGVIRPMNKSPMLITGIRCLQFAPPE 211
Query: 155 FTI 157
F +
Sbjct: 212 FLL 214
>gi|327277598|ref|XP_003223551.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Anolis
carolinensis]
Length = 277
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 188 RQAGVRLNSQ-EAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLI 246
++ G RL++ + ++ P RP VVY L +FKPP FTI+V C G + ++
Sbjct: 151 KKGGQRLSTLVKKGELVEAKPARPV-----VVYNLTLKNFKPPLFTIDVECGGGF--YVR 203
Query: 247 RLIYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLVDKMDP 305
L+ D+G +L S A + + F L EH+L W + + +++ L+ + +P
Sbjct: 204 SLVNDIGRELSSCATVQELTRTKQGPFTLEEHALSEDKWTIGEIGQSLERCMLLLQE-EP 262
Query: 306 MRPQLQS 312
R +L++
Sbjct: 263 SRKKLKT 269
>gi|395502055|ref|XP_003755402.1| PREDICTED: probable tRNA pseudouridine synthase 1 [Sarcophilus
harrisii]
Length = 266
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY L F+PP FT++V C G + ++ L
Sbjct: 117 SALKKDGQRLSTLMKKGEVVEAKPARPVTVYSLSLQKFQPPLFTLDVECGGGF--YIRSL 174
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAH------NETLVD 301
+ D+G +L S A + + F L EH+L W + + +++ H E V
Sbjct: 175 VSDIGKELSSCATVQELTRTKQGPFTLEEHALREDKWTIDGIAQSLEHCMPLLSVEPSVK 234
Query: 302 KMDPMRPQLQSVNMTD 317
K+ ++Q+V+ D
Sbjct: 235 KLKTEDSKVQAVSSED 250
>gi|301623603|ref|XP_002941103.1| PREDICTED: probable tRNA pseudouridine synthase 1 [Xenopus
(Silurana) tropicalis]
Length = 275
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 169 EAVLKITDNNCLFVC-LFVH-RQAGVRLNS--QEAYDIARQGPIRPALLKEPVVYGLKCV 224
E LK+ N + V LF ++ G RL+ ++ ++ + P RP VY L
Sbjct: 125 EGALKLFTGNIMQVPPLFSALKRDGKRLSCLLRDGAEVEAK-PARPV-----TVYQLSLR 178
Query: 225 HFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLE-HSLLRKH 283
F+PP FT++V C G + ++ L+ DLG L+S A + + F LE H+L +
Sbjct: 179 DFQPPVFTLDVECGGGF--YVRSLVNDLGKALKSCASVKELVRTKQGPFTLEDHTLKEED 236
Query: 284 WRVQHVIENIAHNETLVDKMDPMRPQLQSVNMTDSDSTDGSN 325
W + + + + L+ P P + + ++D+T GS
Sbjct: 237 WNISRIAQALQEYGPLL----PAEPGNKRLKKENADNTVGSG 274
>gi|410976149|ref|XP_003994486.1| PREDICTED: probable tRNA pseudouridine synthase 1 [Felis catus]
Length = 349
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G I A PV VY L F+PP FT++V C G + ++ L
Sbjct: 200 SALKKDGQRLSTLMKRGEIVEAKPARPVTVYSLSLQKFQPPFFTLDVECGGGF--YIRSL 257
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F L EH+L W + + +++ H +L+
Sbjct: 258 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLL 310
>gi|355726457|gb|AES08878.1| TruB pseudouridine synthase-like protein 1 [Mustela putorius furo]
Length = 297
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY L F+PP FT++V C G + ++ L
Sbjct: 149 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSLSLQKFQPPFFTLDVECGGGF--YIRSL 206
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F L EH+L W + + +++ H +L+
Sbjct: 207 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLL 259
>gi|73998872|ref|XP_544030.2| PREDICTED: probable tRNA pseudouridine synthase 1 [Canis lupus
familiaris]
Length = 350
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY L F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSLSLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F L EH+L W + + +++ H +L+
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLL 311
>gi|291404856|ref|XP_002718771.1| PREDICTED: TruB pseudouridine (psi) synthase homolog 1 [Oryctolagus
cuniculus]
Length = 346
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 197 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YVRSL 254
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F L EH+L W + + +++ H +L+
Sbjct: 255 VSDIGKELSSCANVLELTRTKQGPFTLEEHALAEDRWTIDDIAQSLEHCSSLL 307
>gi|348578832|ref|XP_003475186.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Cavia
porcellus]
Length = 349
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 200 SALKKDGQRLSTLMKRGKVVEAKPARPVTVYSISLEKFQPPFFTLDVECGGGF--YIRSL 257
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G L S A + + F L EH+L W + + +++ H +L
Sbjct: 258 VSDIGKALSSCASVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLGHCSSL 309
>gi|395828035|ref|XP_003787192.1| PREDICTED: probable tRNA pseudouridine synthase 1 [Otolemur
garnettii]
Length = 350
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL------VD 301
+ D+G +L S A + + F L EH+L W + + +++ H +L +
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLLPAELALK 318
Query: 302 KMDPMRPQLQ 311
K P P Q
Sbjct: 319 KSKPEEPNEQ 328
>gi|62898866|dbj|BAD97287.1| TruB pseudouridine (psi) synthase homolog 1 variant [Homo sapiens]
Length = 349
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>gi|194380868|dbj|BAG64002.1| unnamed protein product [Homo sapiens]
Length = 251
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 103 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 160
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 161 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 212
>gi|332211857|ref|XP_003255032.1| PREDICTED: probable tRNA pseudouridine synthase 1 isoform 1
[Nomascus leucogenys]
Length = 349
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>gi|332211859|ref|XP_003255033.1| PREDICTED: probable tRNA pseudouridine synthase 1 isoform 2
[Nomascus leucogenys]
Length = 316
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 168 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 225
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 226 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 277
>gi|397510557|ref|XP_003825661.1| PREDICTED: probable tRNA pseudouridine synthase 1 isoform 1 [Pan
paniscus]
gi|410223610|gb|JAA09024.1| TruB pseudouridine (psi) synthase homolog 1 [Pan troglodytes]
gi|410264802|gb|JAA20367.1| TruB pseudouridine (psi) synthase homolog 1 [Pan troglodytes]
gi|410296388|gb|JAA26794.1| TruB pseudouridine (psi) synthase homolog 1 [Pan troglodytes]
gi|410349355|gb|JAA41281.1| TruB pseudouridine (psi) synthase homolog 1 [Pan troglodytes]
Length = 349
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>gi|397510559|ref|XP_003825662.1| PREDICTED: probable tRNA pseudouridine synthase 1 isoform 2 [Pan
paniscus]
Length = 316
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 168 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 225
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 226 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 277
>gi|388452436|ref|NP_001253927.1| probable tRNA pseudouridine synthase 1 [Macaca mulatta]
gi|380809828|gb|AFE76789.1| putative tRNA pseudouridine synthase 1 [Macaca mulatta]
gi|383415941|gb|AFH31184.1| putative tRNA pseudouridine synthase 1 [Macaca mulatta]
Length = 350
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>gi|348533247|ref|XP_003454117.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Oreochromis
niloticus]
Length = 278
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 207 PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQ 266
P RP + VY L FKPP FT+++ C G + ++ L+ DLG L S A +
Sbjct: 178 PARPVM-----VYNLTLQEFKPPLFTLDIECGGGF--YVRSLVDDLGKALSSCAHVKELI 230
Query: 267 CIRFAQFGL-EHSLLRKHWRVQHV---IENIAHNETLVDKMDPMR 307
+ F L EH+L + W ++H+ ++ + E D + P +
Sbjct: 231 RTKQGPFTLEEHALHEEQWTLEHISRSLKTCSEGEQEEDHLKPKK 275
>gi|87312284|ref|ZP_01094382.1| tRNA pseudouridine synthase B, partial [Blastopirellula marina DSM
3645]
gi|87284988|gb|EAQ76924.1| tRNA pseudouridine synthase B [Blastopirellula marina DSM 3645]
Length = 280
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++++ + AY +ARQG + +Y + F+ P F I+V C G ++ L
Sbjct: 118 SAIKVDGKRAYKLARQGAAVELAPRPITIYEITLRGFEYPRFEIDVLCGGGT--YMRALG 175
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK 302
D+G +L S A+ T +Q F LE ++ + V EN++ T V +
Sbjct: 176 RDIGERLGSGAVMTGLQRTAIGDFRLEDAIPLDELSAESVAENLSPLSTAVSQ 228
>gi|355562799|gb|EHH19393.1| hypothetical protein EGK_20088 [Macaca mulatta]
Length = 350
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>gi|189053497|dbj|BAG35663.1| unnamed protein product [Homo sapiens]
Length = 349
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>gi|21040257|ref|NP_631908.1| probable tRNA pseudouridine synthase 1 [Homo sapiens]
gi|74751577|sp|Q8WWH5.1|TRUB1_HUMAN RecName: Full=Probable tRNA pseudouridine synthase 1
gi|17484109|gb|AAL40350.1|AF448144_1 TruB pseudouridine synthase-like protein 1 [Homo sapiens]
gi|21040415|gb|AAH30601.1| TruB pseudouridine (psi) synthase homolog 1 (E. coli) [Homo
sapiens]
gi|50950038|emb|CAH10560.1| hypothetical protein [Homo sapiens]
gi|119569848|gb|EAW49463.1| TruB pseudouridine (psi) synthase homolog 1 (E. coli) [Homo
sapiens]
gi|123979968|gb|ABM81813.1| TruB pseudouridine (psi) synthase homolog 1 (E. coli) [synthetic
construct]
gi|123994735|gb|ABM84969.1| TruB pseudouridine (psi) synthase homolog 1 (E. coli) [synthetic
construct]
Length = 349
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>gi|355783120|gb|EHH65041.1| hypothetical protein EGM_18382 [Macaca fascicularis]
Length = 350
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>gi|426366269|ref|XP_004050183.1| PREDICTED: probable tRNA pseudouridine synthase 1 isoform 1
[Gorilla gorilla gorilla]
Length = 349
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>gi|301755488|ref|XP_002913593.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Ailuropoda
melanoleuca]
Length = 350
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY L F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGAVVAAKPARPVTVYSLSLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F L EH+L W + + + + H +L+
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQCLEHCSSLL 311
>gi|402881559|ref|XP_003904336.1| PREDICTED: probable tRNA pseudouridine synthase 1 isoform 1 [Papio
anubis]
Length = 350
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>gi|426366271|ref|XP_004050184.1| PREDICTED: probable tRNA pseudouridine synthase 1 isoform 2
[Gorilla gorilla gorilla]
Length = 316
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 168 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 225
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 226 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 277
>gi|390473199|ref|XP_003734570.1| PREDICTED: LOW QUALITY PROTEIN: probable tRNA pseudouridine
synthase 1 [Callithrix jacchus]
Length = 357
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 208 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 265
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 266 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 317
>gi|281347732|gb|EFB23316.1| hypothetical protein PANDA_001400 [Ailuropoda melanoleuca]
Length = 349
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY L F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGAVVAAKPARPVTVYSLSLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F L EH+L W + + + + H +L+
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQCLEHCSSLL 311
>gi|224052889|ref|XP_002186667.1| PREDICTED: probable tRNA pseudouridine synthase 1 [Taeniopygia
guttata]
Length = 285
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 17/170 (10%)
Query: 146 KCVHFKPPD-FTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIAR 204
K KP D T G+L + L + ++++ L+ L ++ G RL++ + +
Sbjct: 117 KVTEEKPYDQVTKGDLENVLQKFTGEIMQVPP---LYSAL---KKDGKRLST-----LMK 165
Query: 205 QGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICT 263
+G A PV VY L F+PP FT++V C G + ++ L+ D+G +L + A
Sbjct: 166 RGEAVEAKPARPVRVYSLSLQQFQPPLFTLDVECGGGF--YVRSLVNDIGKELSTCASVQ 223
Query: 264 SIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQLQS 312
+ + F L EH+L W + + +++ H L+ +P R +L++
Sbjct: 224 ELTRTKQGPFTLEEHALHEDKWTIDDIAQSLEHCTALL-LGEPARKKLKT 272
>gi|149689654|ref|XP_001495177.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Equus
caballus]
Length = 350
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G A PV VY L F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGAAVEAKPARPVTVYSLSLRKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F L EH+L W + + +++ H +L+
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLL 311
>gi|349604462|gb|AEQ00006.1| putative tRNA pseudouridine synthase 1-like protein, partial [Equus
caballus]
Length = 160
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G A PV VY L F+PP FT++V C G + ++ L
Sbjct: 11 SALKKDGQRLSTLMKRGAAVEAKPARPVTVYSLSLRKFQPPFFTLDVECGGGF--YIRSL 68
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F L EH+L W + + +++ H +L+
Sbjct: 69 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLL 121
>gi|402881561|ref|XP_003904337.1| PREDICTED: probable tRNA pseudouridine synthase 1 isoform 2 [Papio
anubis]
Length = 317
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 168 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 225
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 226 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 277
>gi|193785060|dbj|BAG54213.1| unnamed protein product [Homo sapiens]
Length = 156
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 8 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 65
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 66 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 117
>gi|229496096|ref|ZP_04389818.1| tRNA pseudouridine synthase B [Porphyromonas endodontalis ATCC
35406]
gi|229316992|gb|EEN82903.1| tRNA pseudouridine synthase B [Porphyromonas endodontalis ATCC
35406]
Length = 261
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHC-IGEYEEFLIRL 248
+ V + + AYD+AR+G K ++ L+ V F+PP T+ V C G Y L R
Sbjct: 146 SAVSVGGKRAYDLARKGKDCQLEGKPITIHELEVVSFEPPYATLRVSCGKGTYIRSLAR- 204
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRP 308
DLG +L+S A T+++ + +E SL ++ + + +AH E + DP+ P
Sbjct: 205 --DLGERLQSGAYLTALRRTQLGNVRVEDSLT-----LEELPDFLAHAELNEEGFDPIVP 257
>gi|431895419|gb|ELK04935.1| Putative tRNA pseudouridine synthase 1 [Pteropus alecto]
Length = 349
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 207 PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQ 266
P RP VY L F+PP FT++V C G + ++ L+ D+G +L S A +
Sbjct: 223 PARPV-----TVYSLSLQKFQPPFFTLDVECGGGF--YIRSLVSDIGKELSSCANVLELT 275
Query: 267 CIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ F L EH+L W + + +++ H +L+
Sbjct: 276 RTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLL 310
>gi|192453564|ref|NP_001122159.1| probable tRNA pseudouridine synthase 1 [Danio rerio]
gi|190339188|gb|AAI63177.1| Zgc:195155 protein [Danio rerio]
gi|190339190|gb|AAI63184.1| Zgc:195155 protein [Danio rerio]
gi|190339560|gb|AAI62751.1| Zgc:195155 [Danio rerio]
Length = 290
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 207 PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQ 266
P RP VY L F PP FTI+V C G + ++ LI DLG L S A +
Sbjct: 173 PARPV-----TVYNLSLEDFSPPLFTIDVECGGGF--YVRSLIDDLGKALSSCAHIKELT 225
Query: 267 CIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQLQSVNMTDSDSTDGSN 325
+ QF L EH+L W + + + + D + N T S+S G+
Sbjct: 226 RTKQGQFTLEEHALKEDRWTLTDISQALQPCPVPADSEKNAKKAKSKHNTTTSESKGGAG 285
>gi|332835090|ref|XP_003312825.1| PREDICTED: probable tRNA pseudouridine synthase 1 isoform 1 [Pan
troglodytes]
Length = 316
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 168 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 225
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAH 295
+ D+G +L S A + + F L EH+L W + + +++ H
Sbjct: 226 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEH 273
>gi|332835088|ref|XP_521611.3| PREDICTED: probable tRNA pseudouridine synthase 1 isoform 2 [Pan
troglodytes]
Length = 349
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAH 295
+ D+G +L S A + + F L EH+L W + + +++ H
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEH 306
>gi|440802411|gb|ELR23340.1| tRNA pseudouridine synthase B, putative [Acanthamoeba castellanii
str. Neff]
Length = 255
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ +R+N AY +AR G ++ V+ L V F PP FTI V G +
Sbjct: 148 SALRVNGVRAYKLARSGQEVDIPPRQVFVHSLTLVDFSPPFFTIRVKTDGG--------L 199
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIA 294
YD+G KL S A T+++ + F L+ +L W + + IA
Sbjct: 200 YDIGHKLDSCAYTTALERTQHGPFTLDMALREHQWTADALHQAIA 244
>gi|354502530|ref|XP_003513337.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Cricetulus
griseus]
gi|344252437|gb|EGW08541.1| putative tRNA pseudouridine synthase 1 [Cricetulus griseus]
Length = 327
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 209 RPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCI 268
RPA L VY + + F+PP FT++V C G + ++ L+ D+G +L S A +
Sbjct: 200 RPARL--VTVYSIALLRFQPPLFTLDVECGGGF--YIRSLVNDIGKELSSCAHVLELTRT 255
Query: 269 RFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV-DKMDPMRPQ 309
+ F L EH+L W + + +++ H +L+ D++ +P+
Sbjct: 256 KQGPFTLEEHALPEDRWTIDDIAQSLEHCTSLLPDELAFKKPK 298
>gi|403259452|ref|XP_003922227.1| PREDICTED: probable tRNA pseudouridine synthase 1 [Saimiri
boliviensis boliviensis]
Length = 429
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 280 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 337
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + +++ H +L
Sbjct: 338 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 389
>gi|351706830|gb|EHB09749.1| Putative tRNA pseudouridine synthase 1 [Heterocephalus glaber]
Length = 346
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT+++ C G + ++ L
Sbjct: 197 SALKKDGQRLSTLMKRGKVVEAKPARPVTVYSISLQKFQPPFFTLDIECGGGF--YIRSL 254
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F L EH+L W + + ++ H +L
Sbjct: 255 VSDIGKELASCASVLELTRTKQGPFTLEEHALPEDKWTIGDIARSLGHCSSL 306
>gi|194042071|ref|XP_001929431.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Sus scrofa]
Length = 350
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLI 246
++ G RL+S + ++G + A PV VY + +F+PP FT++V C G + ++
Sbjct: 204 KKDGQRLSS-----LMKRGKVVEAKPARPVTVYSISLQNFQPPLFTLDVECGGGF--YIR 256
Query: 247 RLIYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
L+ D+G +L S A + + F L EH+L W + + +++ +L+
Sbjct: 257 SLVSDIGKELSSCASVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLDQCASLL 311
>gi|358419193|ref|XP_003584154.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Bos taurus]
gi|359080178|ref|XP_003587944.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Bos taurus]
gi|440902323|gb|ELR53126.1| Putative tRNA pseudouridine synthase 1 [Bos grunniens mutus]
Length = 352
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY L F+PP FT++V C G + ++ L
Sbjct: 203 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSLSLQKFQPPFFTLDVECGGGF--YIRSL 260
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F L EH+L W + + +++ +L+
Sbjct: 261 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLQRCSSLL 313
>gi|313673257|ref|YP_004051368.1| tRNA pseudouridine synthase b [Calditerrivibrio nitroreducens DSM
19672]
gi|312940013|gb|ADR19205.1| tRNA pseudouridine synthase B [Calditerrivibrio nitroreducens DSM
19672]
Length = 301
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 147 CVHFKPPDF-TIGNLYS---ALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDI 202
+ FK + T G+L + +P +E + KI +N V L + + V + + AY++
Sbjct: 71 VLGFKTDSYDTTGSLVAEGDGRIPSEEEIQKIINNLVGEVELEIPAFSAVNIKGKRAYEL 130
Query: 203 ARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAIC 262
AR+G I A +++ ++Y +K V + P+ TI + E ++ +I +G L +
Sbjct: 131 ARKGLIENAGMRKSIIYDIKLVEYSYPNLTISLKV--EKGTYVRSIINKIGEMLGTFGTM 188
Query: 263 TSIQCIRFAQFGLEHSL 279
+ +R F ++ +L
Sbjct: 189 NKLLRVRSGFFHVDTAL 205
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 89 VPSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148
+PS + +QK++ + L + + V + + AY++A +G I A +++ ++Y +K V
Sbjct: 93 IPSEEEIQKIINNLVGEVELEIPAFSAVNIKGKRAYELARKGLIENAGMRKSIIYDIKLV 152
Query: 149 HFKPPDFTI 157
+ P+ TI
Sbjct: 153 EYSYPNLTI 161
>gi|50749833|ref|XP_421776.1| PREDICTED: probable tRNA pseudouridine synthase 1 [Gallus gallus]
Length = 283
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 207 PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQ 266
P RP VY L F+PP FT++V C G + ++ L+ D+G +L + C SIQ
Sbjct: 172 PARPVR-----VYSLSLRQFQPPLFTLDVECGGGF--YVRSLVSDIGKEL---STCASIQ 221
Query: 267 CIRFAQFG----LEHSLLRKHWRVQHVIENIAH 295
+ + G EH+L W + + ++ H
Sbjct: 222 ELTRTKHGPFTLEEHALHEDRWTIDEIARSLEH 254
>gi|426253405|ref|XP_004020386.1| PREDICTED: LOW QUALITY PROTEIN: probable tRNA pseudouridine
synthase 1 [Ovis aries]
Length = 346
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 207 PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQ 266
P RP VY L F+PP FT++V C G + ++ L+ D+G +L S A +
Sbjct: 220 PARPV-----TVYSLSLQKFQPPFFTLDVECGGGF--YIRSLVSDIGKELSSCANVLELT 272
Query: 267 CIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETL 299
+ F L EH+L W + + +++ +L
Sbjct: 273 RTKQGPFTLEEHALPEDKWTIDDIAQSLERCSSL 306
>gi|344248094|gb|EGW04198.1| putative tRNA pseudouridine synthase 1 [Cricetulus griseus]
Length = 296
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 198 EAYDIARQGPI---RPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGT 254
EA + ++G RPA L VY + + F+PP FT++V C G + ++ L+ D+G
Sbjct: 107 EAVNAHKRGEAVEARPARLV--TVYSVSFLRFQPPRFTLDVECGGGF--YIRSLVNDIGK 162
Query: 255 KLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV-DKMDPMRPQ 309
+L S A + + F L EH+L W + + +++ +L+ D++ +P+
Sbjct: 163 ELSSCAHVLELTRTKQGPFTLEEHALPEDRWTIDDIAQSLEQCASLLPDELAFKKPK 219
>gi|395824455|ref|XP_003785479.1| PREDICTED: probable tRNA pseudouridine synthase 2 [Otolemur
garnettii]
Length = 297
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 112 RQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGN 159
R + + L +QEAY++A +G IRP ++ G++C+HF PP+F +G
Sbjct: 166 RYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLLGE 213
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEF 244
R + + L +QEAY++A +G IRP ++ G++C+HF PP+F + C E +
Sbjct: 166 RYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLHFAPPEFLLGEPCFVETQAL 222
>gi|319789880|ref|YP_004151513.1| tRNA pseudouridine synthase B [Thermovibrio ammonificans HB-1]
gi|317114382|gb|ADU96872.1| tRNA pseudouridine synthase B [Thermovibrio ammonificans HB-1]
Length = 283
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ VR+ + AY +AR+G + VY LK + F P F++EV C ++ L+
Sbjct: 120 SAVRIKGKRAYQLAREGKEFTLPKRRVTVYSLKLLSFSFPRFSLEVCC--SSGTYIRSLV 177
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLV 300
+D+G L + A+ TS++ + +E ++ +++ + E+L+
Sbjct: 178 HDIGLALGTDAVVTSLRRTKVGNLSVESAVKLSELNRENLFSYLLPVESLL 228
>gi|149466844|ref|XP_001520483.1| PREDICTED: probable tRNA pseudouridine synthase 2-like
[Ornithorhynchus anatinus]
Length = 267
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L ++L +I ++ + + + L +QEAY++A +G IRP ++ G++C+ F PP+
Sbjct: 146 LDRILAVIQGSHQKALVMHSRLDLKTQEAYELAVKGLIRPMDKAPMLILGVRCLEFSPPE 205
Query: 155 FTIGNLYSALLPWQEAVLKITDNNCLF 181
F + ++++ A + T LF
Sbjct: 206 FLFRYVKASVVDLPPAQMMQTKAGTLF 232
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDF 231
L +QEAY++A +G IRP ++ G++C+ F PP+F
Sbjct: 169 LKTQEAYELAVKGLIRPMDKAPMLILGVRCLEFSPPEF 206
>gi|291525072|emb|CBK90659.1| tRNA pseudouridine synthase B [Eubacterium rectale DSM 17629]
Length = 299
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 169 EAVLKITDNNCL-FVCLFVHRQ-------AGVRLNSQEAYDIARQGPIRPALLKEPVVYG 220
+A + +TD + F+ RQ + +++N ++ Y++AR+G + ++ V+
Sbjct: 89 QAKVNVTDQAVYDAISQFIGRQKQVPPMYSALKVNGKKLYELAREGKVIERKARDIEVFD 148
Query: 221 LKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
+K P+ T+ VHC ++ L D+G +L S+ +R A F LEH+L
Sbjct: 149 IKVESIDLPEVTMTVHC--SKGTYIRTLCNDIGERLGCHGCMKSLLRVRVAGFDLEHAL 205
>gi|238924301|ref|YP_002937817.1| tRNA pseudouridine synthase B [Eubacterium rectale ATCC 33656]
gi|238875976|gb|ACR75683.1| tRNA pseudouridine synthase B [Eubacterium rectale ATCC 33656]
Length = 299
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 185 FVHRQ-------AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHC 237
F+ RQ + +++N ++ Y++AR+G + ++ V+ +K P+ T+ VHC
Sbjct: 106 FIGRQKQVPPMYSALKVNGKKLYELAREGKVIERKARDIEVFDIKVESIDLPEVTMTVHC 165
Query: 238 IGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
++ L D+G +L S+ +R A F LEH+L
Sbjct: 166 --SKGTYIRTLCNDIGERLGCHGCMKSLLRVRVAGFDLEHAL 205
>gi|291529167|emb|CBK94753.1| tRNA pseudouridine synthase B [Eubacterium rectale M104/1]
Length = 299
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 185 FVHRQ-------AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHC 237
F+ RQ + +++N ++ Y++AR+G + ++ V+ +K P+ T+ VHC
Sbjct: 106 FIGRQKQVPPMYSALKVNGKKLYELAREGKVIERKARDIEVFDIKVESIDLPEVTMTVHC 165
Query: 238 IGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
++ L D+G +L S+ +R A F LEH+L
Sbjct: 166 --SKGTYIRTLCNDIGERLGCHGCMKSLLRVRVAGFDLEHAL 205
>gi|406836857|ref|ZP_11096451.1| tRNA pseudouridine synthase B [Schlesneria paludicola DSM 18645]
Length = 308
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ V + Q AYD+AR+G + L PV ++ L+ F+PP+F ++V C G ++ +
Sbjct: 128 SAVHVQGQRAYDLARRG-VTVELAARPVDIFSLELTAFQPPEFELDVICGGGT--YIRSI 184
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
DLG +L A+ T ++ + + + +++
Sbjct: 185 GRDLGARLGCGALMTDLRRLAVGHYEIANAV 215
>gi|59808884|gb|AAH89592.1| TruB pseudouridine (psi) synthase homolog 1 (E. coli) [Mus
musculus]
Length = 338
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV V+ + + F+PP FT++V C G + ++ L
Sbjct: 189 SALKKDGQRLSTLMKKGKVVEARPARPVTVHSISLLKFQPPFFTLDVECGGGF--YIRSL 246
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLVDKMDPMR 307
+ D+G +L S A + + F L +H+L W + + +++ +L+ + +
Sbjct: 247 VSDIGKELSSCASVLELTRTKQGPFTLAQHALPEDRWTIDDIEQSLERCTSLLPEELTFK 306
Query: 308 PQLQSVNMTD 317
+L+S N +D
Sbjct: 307 -KLKSDNSSD 315
>gi|21312414|ref|NP_082391.1| probable tRNA pseudouridine synthase 1 isoform 1 [Mus musculus]
gi|81898291|sp|Q8C0D0.1|TRUB1_MOUSE RecName: Full=Probable tRNA pseudouridine synthase 1
gi|26327525|dbj|BAC27506.1| unnamed protein product [Mus musculus]
gi|74141841|dbj|BAE40991.1| unnamed protein product [Mus musculus]
gi|148669838|gb|EDL01785.1| TruB pseudouridine (psi) synthase homolog 1 (E. coli), isoform
CRA_c [Mus musculus]
Length = 338
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV V+ + + F+PP FT++V C G + ++ L
Sbjct: 189 SALKKDGQRLSTLMKKGKVVEARPARPVTVHSISLLKFQPPFFTLDVECGGGF--YIRSL 246
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLVDKMDPMR 307
+ D+G +L S A + + F L +H+L W + + +++ +L+ + +
Sbjct: 247 VSDIGKELSSCASVLELTRTKQGPFTLAQHALPEDRWTIDDIEQSLERCTSLLPEELTFK 306
Query: 308 PQLQSVNMTD 317
+L+S N +D
Sbjct: 307 -KLKSDNSSD 315
>gi|344274715|ref|XP_003409160.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Loxodonta
africana]
Length = 361
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G A PV VY + F+PP FT++V C G + ++ L
Sbjct: 205 SALKKDGQRLSTLMKRGEAVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 262
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGLE-HSLLRKHWRVQHVIENI 293
+ D+G +L S A + + F LE H+L + W + + + +
Sbjct: 263 VSDIGKELSSCANVLELTRTKQGPFTLEDHALPEEKWTIDDIAQAL 308
>gi|32449933|gb|AAH54088.1| Trub1 protein, partial [Mus musculus]
Length = 289
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV V+ + + F+PP FT++V C G + ++ L
Sbjct: 140 SALKKDGQRLSTLMKKGKVVEARPARPVTVHSISLLKFQPPFFTLDVECGGGF--YIRSL 197
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLVDKMDPMR 307
+ D+G +L S A + + F L +H+L W + + +++ +L+ + +
Sbjct: 198 VSDIGKELSSCASVLELTRTKQGPFTLAQHALPEDRWTIDDIEQSLERCTSLLPEELTFK 257
Query: 308 PQLQSVNMTD 317
+L+S N +D
Sbjct: 258 -KLKSDNSSD 266
>gi|148669836|gb|EDL01783.1| TruB pseudouridine (psi) synthase homolog 1 (E. coli), isoform
CRA_a [Mus musculus]
Length = 269
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV V+ + + F+PP FT++V C G + ++ L
Sbjct: 120 SALKKDGQRLSTLMKKGKVVEARPARPVTVHSISLLKFQPPFFTLDVECGGGF--YIRSL 177
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLVDKMDPMR 307
+ D+G +L S A + + F L +H+L W + + +++ +L+ + +
Sbjct: 178 VSDIGKELSSCASVLELTRTKQGPFTLAQHALPEDRWTIDDIEQSLERCTSLLPEELTFK 237
Query: 308 PQLQSVNMTD 317
+L+S N +D
Sbjct: 238 -KLKSDNSSD 246
>gi|326924005|ref|XP_003208223.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Meleagris
gallopavo]
Length = 283
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 207 PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQ 266
P RP VY L F+PP FT++V C G + ++ L+ D+G +L + C SIQ
Sbjct: 172 PARPVR-----VYSLSLQQFQPPLFTLDVECGGGF--YVRSLVSDIGKEL---STCASIQ 221
Query: 267 CIRFAQFG----LEHSLLRKHWRVQHVIENI 293
+ + G EH+L W + + ++
Sbjct: 222 ELTRTKHGPFTLEEHALHEDRWTIDEIARSL 252
>gi|149040482|gb|EDL94520.1| rCG57442, isoform CRA_c [Rattus norvegicus]
Length = 223
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 177 NNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEV 235
N +C ++ G RL++ + ++G A PV V+ + + ++PP FT++V
Sbjct: 66 NRGEAICYSALKKDGQRLST-----LMKRGETVEARPARPVTVHSISLLKYQPPFFTLDV 120
Query: 236 HCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIA 294
C G + ++ L+ D+G +L S A + + F L +H+L W + + +++
Sbjct: 121 ECGGGF--YIRSLVSDIGKELSSCATVLELTRTKQGPFTLAQHALPEDRWTINDIAQSLK 178
Query: 295 HNETLVDKMDPMRPQLQSVNMTDSDSTDGSNVSDGNRTVLET 336
+L+ P+ + + S+ + +S G T+ ET
Sbjct: 179 RCTSLL-------PEELTFKKSKSEPSSDQALSCGYITLRET 213
>gi|291514903|emb|CBK64113.1| tRNA pseudouridine synthase B [Alistipes shahii WAL 8301]
Length = 238
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 193 RLNSQEAYDIARQG---PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+++ AY++AR G +R AL+ +Y ++ V + P I V C ++ L
Sbjct: 139 KIDGTRAYELARAGEEVAVRQALIN---IYEMEIVEYDLPRVRIRVRC--SKGTYIRSLA 193
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNET 298
+++G LRS A TS++ R F LE K + + +EN+ ET
Sbjct: 194 HEIGQALRSGAHLTSLRRTRSGGFTLE-----KSYELDEFLENLQKLET 237
>gi|255524225|ref|ZP_05391184.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|296185346|ref|ZP_06853756.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|255512050|gb|EET88331.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|296050180|gb|EFG89604.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
Length = 291
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ +++N Q Y +ARQG + +Y + + + P EV C ++ L
Sbjct: 117 SALKVNGQRLYSLARQGIEIERKPRSITIYSINIIDIQLPKVIFEVKC--SKGTYIRSLC 174
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK 302
YD+G KL+ ++Q R F +E S+ ++++ E + E ++K
Sbjct: 175 YDIGEKLKCGGTMWNLQRTRTGSFNIESSVDLDKLNIENINEYLIPMERALEK 227
>gi|452851473|ref|YP_007493157.1| tRNA pseudouridine synthase B [Desulfovibrio piezophilus]
gi|451895127|emb|CCH48006.1| tRNA pseudouridine synthase B [Desulfovibrio piezophilus]
Length = 313
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 200 YDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSA 259
Y +AR+G P +K V+ ++ + + + + V C ++ L++ LGT++
Sbjct: 139 YSLAREGKETPVKIKPIVISHVEVLDVQAKEASFRVSC--SAGTYIRSLVHSLGTRIGCG 196
Query: 260 AICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHN-ETLVDKMDPMRPQL 310
A+ TS+ + FGL+H+ H + N+ N E+ DK+ P+ L
Sbjct: 197 AVLTSLNREQSEPFGLDHT---------HTLANVLENPESFSDKVIPLGETL 239
>gi|283780580|ref|YP_003371335.1| tRNA pseudouridine synthase B [Pirellula staleyi DSM 6068]
gi|283439033|gb|ADB17475.1| tRNA pseudouridine synthase B [Pirellula staleyi DSM 6068]
Length = 301
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ +++ + AYD+AR+G +E V+ L+ F PDF + + C E ++ L
Sbjct: 118 SALKVEGERAYDLARRGETVELAPREIVIRRLELTRFDYPDFELVIDC--ESGTYVRSLG 175
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSL----LRKHWRVQHVIENIAHNETL 299
D+ + L + A+ T + F LE ++ + + +H++ +A E L
Sbjct: 176 RDIASALETHAVMTDLIRTSIGSFSLERAITMDSISRETITEHLLPLLAATEQL 229
>gi|406968362|gb|EKD93226.1| tRNA pseudouridine synthase B [uncultured bacterium]
Length = 289
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 190 AGVRLNSQEAYDIARQGP---IRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLI 246
+ +++ Q AY +AR G ++P L+ V+ ++ + F+ P + +HC ++
Sbjct: 124 SAIKVQGQRAYALARAGESVVLKPRLVS---VHSIEILRFELPFVELRIHC--GSGTYIR 178
Query: 247 RLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHW 284
LI+D+G +L A+ T ++ + F L S+ ++W
Sbjct: 179 SLIHDVGQRLGCGALMTELRRLSVGSFSLGQSVPEENW 216
>gi|58865918|ref|NP_001012173.1| probable tRNA pseudouridine synthase 1 [Rattus norvegicus]
gi|81883140|sp|Q5M934.1|TRUB1_RAT RecName: Full=Probable tRNA pseudouridine synthase 1
gi|56585078|gb|AAH87683.1| TruB pseudouridine (psi) synthase homolog 1 (E. coli) [Rattus
norvegicus]
gi|149040481|gb|EDL94519.1| rCG57442, isoform CRA_b [Rattus norvegicus]
Length = 341
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G A PV V+ + + ++PP FT++V C G + ++ L
Sbjct: 192 SALKKDGQRLSTLMKRGETVEARPARPVTVHSISLLKYQPPFFTLDVECGGGF--YIRSL 249
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGL-EHSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F L +H+L W + + +++ +L+
Sbjct: 250 VSDIGKELSSCATVLELTRTKQGPFTLAQHALPEDRWTINDIAQSLKRCTSLL 302
>gi|289432774|ref|YP_003462647.1| tRNA pseudouridine synthase B [Dehalococcoides sp. GT]
gi|288946494|gb|ADC74191.1| tRNA pseudouridine synthase B [Dehalococcoides sp. GT]
Length = 300
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 160 LYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVY 219
+Y L+ +Q +++I HR G+RL Y++ARQG + + +Y
Sbjct: 99 IYKTLMDFQGEIIQIPP----MYSAVKHR--GMRL-----YNLARQGIEVERIPRVATIY 147
Query: 220 GLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
G++ +++ P +++ C + ++ L +DLG KL A S+ + QF L +SL
Sbjct: 148 GIELLNYTSPVLRVQIEC--GHGTYIRSLAFDLGRKLGCGAYLKSLVREAYGQFNLANSL 205
>gi|340368264|ref|XP_003382672.1| PREDICTED: probable tRNA pseudouridine synthase 1-like [Amphimedon
queenslandica]
Length = 242
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 190 AGVRLNSQEAYDIARQG-PIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
+ +++ Q A ++AR+G + + + P+ +Y +K F PP+F I + C ++
Sbjct: 136 SALKIKGQRASNLARKGETVDMSSKRRPICIYQIKLQMFSPPEFGIVLSC--SAGTYVRS 193
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRV 286
LIYD+G ++ A S+ + F L +L + +W +
Sbjct: 194 LIYDIGIASKTVACMKSLCRTKQGPFTLSQALKQDNWTI 232
>gi|321479185|gb|EFX90141.1| hypothetical protein DAPPUDRAFT_33293 [Daphnia pulex]
Length = 188
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 190 AGVRLNSQEAYDIARQG-PI--RPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLI 246
+ ++L + D+AR+G P+ +P L+ Y + F PP T E+ C + F +
Sbjct: 91 SALKLQGRRLSDLAREGVPVDPKPRLV---TCYDFTVIEFAPPKLTFELSC---SKGFYV 144
Query: 247 R-LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHV 289
R L++DLG L S A +++ R F +H L + V +
Sbjct: 145 RSLVHDLGIVLNSCAYLDTLERTRQGPFETQHCLTEEQCTVTGI 188
>gi|406985775|gb|EKE06506.1| hypothetical protein ACD_18C00347G0031 [uncultured bacterium]
Length = 218
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 193 RLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHC-IGEYEEFLIRLIYD 251
++ Q Y++ARQG + +Y +K + ++ P IEV C G Y + +L D
Sbjct: 129 KIQGQRLYELARQGIEVERQANDIEIYDIKLIDYEYPKLKIEVKCSTGTY---IRQLAQD 185
Query: 252 LGTKLRSAAICTSIQCIRFAQFGLEHS 278
+G L A C ++ R ++ +E +
Sbjct: 186 IGETLGCGAYCEELRRTRIGEYNVEDA 212
>gi|256821533|ref|YP_003145496.1| tRNA pseudouridine synthase B [Kangiella koreensis DSM 16069]
gi|256795072|gb|ACV25728.1| tRNA pseudouridine synthase B [Kangiella koreensis DSM 16069]
Length = 308
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 200 YDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSA 259
Y +ARQG +E +Y L+ V F +F ++VHC ++ L+ D+G +L
Sbjct: 137 YKLARQGIEVERDAREVDIYSLELVSFSGDEFVLDVHC--SKGTYVRNLVEDIGEELDCG 194
Query: 260 AICTSIQCIRFAQFGLEHSLLRKHW 284
A ++ FGLE ++ H
Sbjct: 195 AHVLELRRTAVGDFGLEQTVTMAHL 219
>gi|251772263|gb|EES52833.1| tRNA pseudouridine synthase B [Leptospirillum ferrodiazotrophum]
Length = 320
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCI-GEYEEFLI 246
+Q GV L Y +AR+G P + +Y L+ + +PP T VHC G Y L
Sbjct: 133 KQQGVPL-----YKLARKGVTVPREPRRIEIYSLELIAVEPPVLTFRVHCSKGTYIRVLA 187
Query: 247 RLIYDLGTKLRSAAICTSIQCIRFAQFGLEH----SLLRKHWRVQHVIENIAHNETLVDK 302
R ++G L + A + ++ + F L +++ K W I N+ + + D
Sbjct: 188 R---EIGEALSTGAHLSRLRRLSVGTFSLAEATTLAVMEKEWAAPDFIRNLLGPDRVFDT 244
Query: 303 MDPMR 307
+ +R
Sbjct: 245 LPGVR 249
>gi|188997416|ref|YP_001931667.1| tRNA pseudouridine synthase B [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932483|gb|ACD67113.1| tRNA pseudouridine synthase B [Sulfurihydrogenibium sp. YO3AOP1]
Length = 283
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 193 RLNSQEAYDIARQG---PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
R+ AY +A++G ++P L+K +YG++ + P F I+V C ++ LI
Sbjct: 119 RIGGTRAYKLAKKGVEVQLKPVLIK---IYGIEILEINLPYFKIKVDC--SSGTYIRSLI 173
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
D+G K A T + + QF L+ +L
Sbjct: 174 KDIGDKADCGAYMTDLVRTKIGQFDLKDAL 203
>gi|73748748|ref|YP_307987.1| tRNA pseudouridine synthase B [Dehalococcoides sp. CBDB1]
gi|452203734|ref|YP_007483867.1| tRNA pseudouridine synthase B [Dehalococcoides mccartyi DCMB5]
gi|91208078|sp|Q3ZXU5.1|TRUB_DEHSC RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|73660464|emb|CAI83071.1| tRNA pseudouridine synthase B [Dehalococcoides sp. CBDB1]
gi|452110793|gb|AGG06525.1| tRNA pseudouridine synthase B [Dehalococcoides mccartyi DCMB5]
Length = 300
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 160 LYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVY 219
+Y L+ +Q +++I HR G+RL Y++ARQG + + +Y
Sbjct: 99 IYKTLMDFQGEIIQIPP----MYSAVKHR--GMRL-----YNLARQGIEVERIPRVATIY 147
Query: 220 GLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
G++ +++ P + + C + ++ L +DLG KL A S+ + QF L +SL
Sbjct: 148 GIELLNYTSPVLRVRIEC--GHGTYIRSLAFDLGRKLGCGAYLKSLVREAYGQFNLANSL 205
>gi|147669514|ref|YP_001214332.1| tRNA pseudouridine synthase B [Dehalococcoides sp. BAV1]
gi|189036470|sp|A5FQR4.1|TRUB_DEHSB RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|146270462|gb|ABQ17454.1| tRNA pseudouridine synthase B [Dehalococcoides sp. BAV1]
Length = 300
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 160 LYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVY 219
+Y L+ +Q +++I HR G+RL Y++ARQG + + +Y
Sbjct: 99 IYKTLMDFQGEIIQIPP----MYSAVKHR--GMRL-----YNLARQGIEVERIPRVATIY 147
Query: 220 GLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
G++ +++ P + + C + ++ L +DLG KL A S+ + QF L +SL
Sbjct: 148 GIELLNYTSPVLRVRIEC--GHGTYIRSLAFDLGRKLGCGAYLKSLVREAYGQFNLTNSL 205
>gi|452205228|ref|YP_007485357.1| tRNA pseudouridine synthase B [Dehalococcoides mccartyi BTF08]
gi|452112284|gb|AGG08015.1| tRNA pseudouridine synthase B [Dehalococcoides mccartyi BTF08]
Length = 300
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 160 LYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVY 219
+Y L+ +Q +++I HR G+RL Y++ARQG + + +Y
Sbjct: 99 IYKTLMDFQGEIIQIPP----MYSAVKHR--GMRL-----YNLARQGIEVERIPRVATIY 147
Query: 220 GLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
G++ +++ P + + C + ++ L +DLG KL A S+ + QF L +SL
Sbjct: 148 GIELLNYTSPVLRVRIEC--GHGTYIRSLAFDLGRKLGCGAYLKSLVREAYGQFNLANSL 205
>gi|383763488|ref|YP_005442470.1| tRNA pseudouridine synthase B [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383756|dbj|BAM00573.1| tRNA pseudouridine synthase B [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 333
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP-DFTIEVHC-IGEYEEFLIR 247
A ++ + Y AR+G A ++ Y L V F PP ++++ C G Y L R
Sbjct: 151 AAIKQQGETLYRRARRGEAVTAPVRTVTFYALNLVEFTPPARISVDIECSAGAYIRSLAR 210
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLE--HSL 279
DLG L SAA +++ R +F +E HSL
Sbjct: 211 ---DLGRALGSAAYLQALRRTRIGEFTIEEAHSL 241
>gi|228470915|ref|ZP_04055760.1| tRNA pseudouridine synthase B [Porphyromonas uenonis 60-3]
gi|228307312|gb|EEK16326.1| tRNA pseudouridine synthase B [Porphyromonas uenonis 60-3]
Length = 254
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCI-GEYEEFLIRL 248
+ V++ AYD+ARQG K ++ L+ V F PP + + C G Y L R
Sbjct: 148 SAVKVGGIRAYDLARQGQEVELAHKHVTIHELELVSFTPPSLQLRIVCSRGTYIRSLAR- 206
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQF 273
DLGT L S A T + R +
Sbjct: 207 --DLGTALDSGAYLTQLVRTRSGEI 229
>gi|429725907|ref|ZP_19260720.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 473 str.
F0040]
gi|429148455|gb|EKX91461.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 473 str.
F0040]
Length = 239
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 190 AGVRLNSQEAYDIARQG---PIRPALLKEPVVYGLKCVHFKPPDF-TIEVHCI-GEYEEF 244
+ V+++ + AYD+AR+G ++P LL+ + L C F TI V C G Y
Sbjct: 128 SAVKVDGKRAYDLARKGKEVELKPKLLRIDELELLDCALAGADKFLTIRVVCSKGTYIRA 187
Query: 245 LIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLR---KHWRVQHVIEN 292
L R D+G L S A TS++ R F +E + + W Q IE
Sbjct: 188 LAR---DIGEALGSGAHLTSLRRTRVGDFRVEDCMQLDDFEGWLAQQTIET 235
>gi|360045458|emb|CCD83006.1| hypothetical protein Smp_162990 [Schistosoma mansoni]
Length = 367
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 15/68 (22%)
Query: 216 PVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGL 275
P V ++CV F PP FTI + +LG KLR+A + + + +R
Sbjct: 224 PYVNAMRCVDFDPPFFTI---------------VGNLGPKLRTATLLSKARRVRHGPITA 268
Query: 276 EHSLLRKH 283
E+SLL KH
Sbjct: 269 ENSLLMKH 276
>gi|346467059|gb|AEO33374.1| hypothetical protein [Amblyomma maculatum]
Length = 299
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 211 ALLKEPVV-YGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIR 269
A++K P + + +KC PDF +E+ C + ++DLG L S A ++ +
Sbjct: 186 AVMKRPAICHSIKCSKLNLPDFLLEIECGPGFSPRT--FVHDLGKDLDSCAHVVHLEQTQ 243
Query: 270 FAQFGLEHSLLRKHW 284
+ F LEH+L W
Sbjct: 244 YGPFTLEHALPAYRW 258
>gi|313887412|ref|ZP_07821102.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica
PR426713P-I]
gi|332300818|ref|YP_004442739.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica DSM
20707]
gi|312923180|gb|EFR33999.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica
PR426713P-I]
gi|332177881|gb|AEE13571.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica DSM
20707]
Length = 254
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCI-GEYEEFLIRL 248
+ +++ AYD+ARQG K ++ L+ V F PP + + C G Y L R
Sbjct: 148 SAIKVGGIRAYDLARQGQEVELAHKRVTIHELELVSFTPPTLQLRIVCSRGTYIRSLAR- 206
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQF 273
DLGT L S A T + R +
Sbjct: 207 --DLGTALDSGAYLTKLVRTRSGEI 229
>gi|331084718|ref|ZP_08333806.1| hypothetical protein HMPREF0987_00109 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410812|gb|EGG90234.1| hypothetical protein HMPREF0987_00109 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 301
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ +++ ++ Y++AR+G + ++ ++ + P T+EV C ++ L
Sbjct: 119 SALKVGGKKLYELAREGKTVERKARPVQIHSIEIMEIDLPRVTMEVSC--SKGTYIRTLC 176
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK---MDPM 306
+D+G KL A S+ + ++F LE SL IE + TL++ +D M
Sbjct: 177 HDIGEKLGCGACMESLLRTKVSRFELEDSLTLGE------IEKKKQDGTLMEAIIPIDAM 230
Query: 307 RPQLQSVNMTDS 318
P+ +SV++ ++
Sbjct: 231 FPECRSVDVKEA 242
>gi|326435565|gb|EGD81135.1| hypothetical protein PTSG_11173 [Salpingoeca sp. ATCC 50818]
Length = 257
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 218 VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEH 277
V L +F PP+ T+ + C + ++ L++DLGT L S A T++ R FGL
Sbjct: 174 VTQLDLCYFAPPEVTLHIAC--KSGLYVRSLVHDLGTALDSHASVTTLIRTRVNNFGLLD 231
Query: 278 SLLRKHWRVQH 288
+L +W QH
Sbjct: 232 ALQPDNWTPQH 242
>gi|225850186|ref|YP_002730420.1| tRNA pseudouridine synthase B [Persephonella marina EX-H1]
gi|225645419|gb|ACO03605.1| tRNA pseudouridine synthase B [Persephonella marina EX-H1]
Length = 293
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 193 RLNSQEAYDIARQG---PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
R+ + AY +A++G ++P KE +Y ++ + + P FTI+VHC ++ L+
Sbjct: 125 RIEGKRAYQLAKKGIQVKLKP---KEVTIYSIQILKIEMPFFTIKVHC--SSGTYIRSLV 179
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
++G K A S++ + F +E+++
Sbjct: 180 KEIGDKAGCGAYVKSLRRTKVGIFSVENAI 209
>gi|350566724|ref|ZP_08935369.1| tRNA pseudouridine synthase B [Peptoniphilus indolicus ATCC 29427]
gi|348661911|gb|EGY78586.1| tRNA pseudouridine synthase B [Peptoniphilus indolicus ATCC 29427]
Length = 285
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 162 SALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGL 221
SA++P ++++ K +N + + +++ ++ Y+ AR G ++ +Y +
Sbjct: 89 SAMIPSEDSLRKELENFTGDILQEPPIYSAIKIKGKKLYEYARAGEEIEIPKRQCTIYSM 148
Query: 222 KCVHFKPPDFTIEVHCI-GEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLL 280
K + F I ++C G Y LIR D+G KL+S A T ++ + +F L+ S+
Sbjct: 149 KLLDSSENRFIIYINCSSGTYVRSLIR---DIGLKLKSFATMTELRRVSTGKFNLDISVN 205
Query: 281 RKHWR 285
++
Sbjct: 206 KEQLE 210
>gi|242240747|ref|YP_002988928.1| tRNA pseudouridine synthase B [Dickeya dadantii Ech703]
gi|242132804|gb|ACS87106.1| tRNA pseudouridine synthase B [Dickeya dadantii Ech703]
Length = 318
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 200 YDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSA 259
Y+ ARQG + P +E VY L+ + ++ + +E+HC ++ +I DLG KL
Sbjct: 137 YEYARQGVVVPREAREITVYELQFIRWEAEELELEIHC--SKGTYIRTIIDDLGEKLGCG 194
Query: 260 AICTSIQCIRFAQFGLEH 277
A + ++ ++ A + +E
Sbjct: 195 AHVSFLRRLQVATYPVEQ 212
>gi|219117823|ref|XP_002179699.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408752|gb|EEC48685.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 194
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 190 AGVRLNSQEAYDIARQGPIRPAL---LKEPVVYGLKCVH---FKPPDFTIEVHCIGEYEE 243
+ +R N ++ Y +AR+G + ++ +Y L V K P F ++V C G
Sbjct: 91 SALRRNGKKLYTLAREGVSADEIEIEARQVEIYDLTLVAKATTKLPRFQLDVECGGG--T 148
Query: 244 FLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHV 289
++ L+ D+G KL S A +++ + QF L+ L + W +
Sbjct: 149 YIRSLVRDIGYKLDSVATMIALERTQQGQFELDKCLAKDEWSADSI 194
>gi|104774209|ref|YP_619189.1| tRNA pseudouridine synthase B [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|385815958|ref|YP_005852349.1| tRNA pseudouridine synthase B [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|418035059|ref|ZP_12673518.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|123378424|sp|Q1G9Q1.1|TRUB_LACDA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|103423290|emb|CAI98131.1| Pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|325125995|gb|ADY85325.1| tRNA pseudouridine synthase B [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|354690997|gb|EHE90937.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 298
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 190 AGVRLNSQEAYDIARQG-PI-RPALLKEPVVYGLKC-VHFKPPD----FTIEVHCIGEYE 242
+ VR+N + Y+ AR+G P+ RP + +Y L F P FT EV C
Sbjct: 120 SAVRVNGKRLYEYAREGIPVERPKRTVQVFLYDLTAPSQFDPEKGRQTFTYEVEC--SKG 177
Query: 243 EFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDK 302
++ L+ DLG +L A+ T ++ + + L+ ++ ++ + +N+ H E +
Sbjct: 178 TYVRSLVNDLGEELGLPAVMTKLRRTASSGYKLQDAVT-----LEELADNLDHAEDYIQP 232
Query: 303 MDPMRPQLQSVNM 315
+D Q V++
Sbjct: 233 IDSFFADYQQVDL 245
>gi|219870867|ref|YP_002475242.1| tRNA pseudouridine synthase B [Haemophilus parasuis SH0165]
gi|219691071|gb|ACL32294.1| tRNA pseudouridine synthase B [Haemophilus parasuis SH0165]
Length = 305
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 14/137 (10%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ N + Y+ AR G + ++ L V ++ P T+EVHC ++ L+
Sbjct: 127 SALKHNGKPLYEYARAGITVEREARPITIFELLFVEYQAPYLTLEVHC--SKGTYIRTLV 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVD------KM 303
DLG L A T ++ + A + +E + ++N+A N+ LV+ M
Sbjct: 185 DDLGEALGCGAHVTMLRRLAVADYPVEKMM------SLEALQNLAENQPLVELDQLLLPM 238
Query: 304 DPMRPQLQSVNMTDSDS 320
D L S+++TD +
Sbjct: 239 DSAVACLPSLDLTDEQT 255
>gi|167856179|ref|ZP_02478917.1| tRNA pseudouridine synthase B [Haemophilus parasuis 29755]
gi|167852701|gb|EDS23977.1| tRNA pseudouridine synthase B [Haemophilus parasuis 29755]
Length = 305
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 25/170 (14%)
Query: 157 IGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEP 216
I ++ +AL ++ +L++ +F L + N + Y+ AR G +
Sbjct: 105 IADILAALEAFRGEILQVP---TMFSAL--------KHNGKPLYEYARAGITVEREARPI 153
Query: 217 VVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLE 276
++ L V ++ P T+EVHC ++ L+ DLG L A T ++ + A + +E
Sbjct: 154 TIFELLFVEYQAPYLTLEVHC--SKGTYIRTLVDDLGEALGCGAHVTMLRRLAVADYPVE 211
Query: 277 HSLLRKHWRVQHVIENIAHNETLVD------KMDPMRPQLQSVNMTDSDS 320
+ ++N+A N+ LV+ MD +L +++TD +
Sbjct: 212 KMM------SLEALQNLAENQPLVELDQLLLPMDSAVARLPHLDLTDEQT 255
>gi|149174741|ref|ZP_01853366.1| tRNA pseudouridine synthase B [Planctomyces maris DSM 8797]
gi|148846435|gb|EDL60773.1| tRNA pseudouridine synthase B [Planctomyces maris DSM 8797]
Length = 310
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHC-IGEYEEFLIRL 248
+ V +N + AYD+AR+G +E VY ++ + F P F + + C G Y + R
Sbjct: 129 SAVHINGRRAYDLARRGKSFEIQPREVDVYEIELLDFSFPRFQLRIVCGSGTYIRSIGR- 187
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGLEHSL-LRKHWRVQHVIENI 293
DLG +L A +++ R F L+ ++ L + + + +NI
Sbjct: 188 --DLGEQLGVGATMSALTRTRIGPFTLDSAMELDEELSLGTIADNI 231
>gi|299144051|ref|ZP_07037131.1| tRNA pseudouridine synthase B [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518536|gb|EFI42275.1| tRNA pseudouridine synthase B [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 295
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYG---LKCVHFKPPDFTIEVHC-IGEYEEFL 245
+ +++N Q+ Y++ARQG ++ VY LK V +K + I++ C G Y L
Sbjct: 117 SAIKVNGQKLYELARQGKTIELKKRKITVYNIELLKQVDYKS--YYIKIKCSSGTYIRSL 174
Query: 246 IRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
IR D+G L S A + + +F +E+S+
Sbjct: 175 IR---DIGYSLNSLATMEELTRTKSGEFTIENSI 205
>gi|317498929|ref|ZP_07957212.1| tRNA pseudouridine synthase B [Lachnospiraceae bacterium 5_1_63FAA]
gi|316893762|gb|EFV15961.1| tRNA pseudouridine synthase B [Lachnospiraceae bacterium 5_1_63FAA]
Length = 319
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 193 RLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCI-GEYEEFLIRLIYD 251
++N ++ Y++AR+G I + +Y + + P+ T+ V C G Y L R D
Sbjct: 121 KINGKKLYELAREGKIIERTPERIRIYDISDIEISYPEVTMTVTCSKGTYIRSLCR---D 177
Query: 252 LGTKLRSAAICTSIQCIRFAQFGLEHS 278
+G KL++ A T + R + F LE++
Sbjct: 178 IGHKLQNGACMTKLVRTRSSGFQLEYA 204
>gi|166030870|ref|ZP_02233699.1| hypothetical protein DORFOR_00550 [Dorea formicigenerans ATCC
27755]
gi|166029137|gb|EDR47894.1| tRNA pseudouridine synthase B [Dorea formicigenerans ATCC 27755]
Length = 304
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ +++N ++ Y++AR+G I + ++ ++ + P T++VHC ++ L
Sbjct: 119 SALKINGKKLYELAREGKIVERAARRVQIFDIEILSIALPRVTMKVHC--SKGTYIRTLC 176
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSL-------LRKHWRVQHVI 290
+D+G KL A + + ++F ++ SL L+K R+ ++
Sbjct: 177 HDIGQKLGCGACMEKLTRTKVSRFEIKDSLTLAQIEVLKKEDRLSEIL 224
>gi|313678671|ref|YP_004056411.1| tRNA pseudouridine synthase B [Mycoplasma bovis PG45]
gi|339320771|ref|YP_004683293.1| tRNA pseudouridine synthase B [Mycoplasma bovis Hubei-1]
gi|392429851|ref|YP_006470896.1| tRNA pseudouridine synthase B [Mycoplasma bovis HB0801]
gi|312950655|gb|ADR25250.1| tRNA pseudouridine synthase B [Mycoplasma bovis PG45]
gi|338226896|gb|AEI89958.1| tRNA pseudouridine synthase B [Mycoplasma bovis Hubei-1]
gi|392051260|gb|AFM51635.1| tRNA pseudouridine synthase B [Mycoplasma bovis HB0801]
Length = 288
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 173 KITDNNCLFVCLFVHRQ--------AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKC 223
K+T+NN L VC ++ Q + ++N +Y++AR G L K+P+ V+ K
Sbjct: 90 KLTNNNVLKVCKWLESQTEQIPPSFSAKKINGIRSYNLARSGK-EVKLQKQPIKVFSAKI 148
Query: 224 VHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKH 283
+ F + ++ ++ L+ DLG L + A T + ++ L+ SLL +
Sbjct: 149 ISFNIEKQQLVIYVDVSKGTYIRSLVNDLGLYLNTYAYMTELDRVKIGN--LDISLLNGN 206
Query: 284 WRV----QHVIENIAHNETLVDKMDPMRPQLQSVN 314
V H+ I H E + +++ ++ + +N
Sbjct: 207 GFVAISDNHLFS-IPHYEPSIAEINKLKNGISIIN 240
>gi|237755426|ref|ZP_04584052.1| tRNA pseudouridine synthase B [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692426|gb|EEP61408.1| tRNA pseudouridine synthase B [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 288
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 193 RLNSQEAYDIARQG---PIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
R+ AY +A++G ++P L+K +Y ++ + P F I+V C ++ LI
Sbjct: 119 RIGGTRAYKLAKKGVEVQLKPVLVK---IYSIEILEINLPYFKIKVDC--SSGTYIRSLI 173
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
D+G K A T + + QF L+ +L
Sbjct: 174 KDIGDKAGCGAYMTDLVRTKIGQFDLKDAL 203
>gi|251791033|ref|YP_003005754.1| tRNA pseudouridine synthase B [Dickeya zeae Ech1591]
gi|247539654|gb|ACT08275.1| tRNA pseudouridine synthase B [Dickeya zeae Ech1591]
Length = 318
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 200 YDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSA 259
Y+ ARQG + P + VY L+ + ++ + +E+HC ++ +I DLG KL
Sbjct: 137 YEYARQGQVVPREARNITVYELQFIRWEADELELEIHC--SKGTYIRTIIDDLGEKLGCG 194
Query: 260 AICTSIQCIRFAQFGLEH 277
A ++ ++ A + LE
Sbjct: 195 AHVVYLRRLQVATYPLER 212
>gi|455644683|gb|EMF23776.1| tRNA pseudouridine synthase B [Citrobacter freundii GTC 09479]
Length = 314
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 146 KCVHFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQ 205
+ V +P FT L SAL ++ + +I ++ L + ++ Y+ ARQ
Sbjct: 94 QIVQERPVTFTAEQLASALETFRGDIEQIP---SMYSAL--------KYQGKKLYEYARQ 142
Query: 206 GPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSI 265
G P + VY L + + + +EVHC ++ ++ DLG KL A T +
Sbjct: 143 GIEVPREARPITVYELLFIRHEGNELELEVHC--SKGTYIRTIVDDLGEKLGCGAHVTYL 200
Query: 266 QCIRFAQFGLEHSLLRKHWR---VQHVIENIAHNETLVDKMDPM 306
+ + +++ ++ + +H R Q ++NI + L + PM
Sbjct: 201 RRLTVSKYPVDRMVTLEHLRELVEQAELQNIPAAQLLDPLLMPM 244
>gi|304440004|ref|ZP_07399897.1| tRNA pseudouridine synthase B [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371496|gb|EFM25109.1| tRNA pseudouridine synthase B [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 283
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 162 SALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGL 221
S +P +E +L+I + + VRL ++ Y IAR+G + ++ +YGL
Sbjct: 89 SDKIPTKEEILEILPKFTGVIEQIPPMYSAVRLGGRKLYKIAREGKVVDRPKRKVKIYGL 148
Query: 222 KCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
+ + P + ++++C ++ LI D+G L + A TS+ + F +E ++
Sbjct: 149 ELLGTNP--YKVKINC--SSGTYVRTLISDIGKSLGTFATMTSLVRTKVGPFIVEKAI 202
>gi|330370602|gb|AEC12451.1| tRNA pseudouridine synthase B [Haemophilus parasuis str. Nagasaki]
Length = 305
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 14/137 (10%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ N + Y+ AR G + ++ L V ++ P T+EVHC ++ L+
Sbjct: 127 SALKHNGKPLYEYARAGITVEREARPITIFELLFVEYQAPYLTLEVHC--SKGTYIRTLV 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVD------KM 303
DLG L A T ++ + A + +E + ++N+A N+ LV+ M
Sbjct: 185 DDLGEALGCGAHVTMLRRLAVADYPVEKMMTLGD------LQNLAENQPLVELDQLLLPM 238
Query: 304 DPMRPQLQSVNMTDSDS 320
D +L +++TD +
Sbjct: 239 DSAVARLPHLDLTDEQT 255
>gi|167772652|ref|ZP_02444705.1| hypothetical protein ANACOL_04033 [Anaerotruncus colihominis DSM
17241]
gi|167665130|gb|EDS09260.1| tRNA pseudouridine synthase B [Anaerotruncus colihominis DSM 17241]
Length = 300
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGL--KCVHFKPPDFTIEVHCIGEYEEFLIR 247
+ VR+N Q Y++AR+G + VY + + FTI+VHC ++
Sbjct: 120 SAVRVNGQRLYELARRGVEVERAARPVTVYSIDFTACDVQANTFTIDVHC--SKGTYIRT 177
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGL 275
LI D+G L A+ T+++ A F L
Sbjct: 178 LIADIGAALGCGAVMTALRRTMAASFTL 205
>gi|167766529|ref|ZP_02438582.1| hypothetical protein CLOSS21_01035 [Clostridium sp. SS2/1]
gi|429762667|ref|ZP_19295053.1| tRNA pseudouridine synthase B [Anaerostipes hadrus DSM 3319]
gi|167711652|gb|EDS22231.1| tRNA pseudouridine synthase B [Clostridium sp. SS2/1]
gi|291558568|emb|CBL37368.1| tRNA pseudouridine synthase B [butyrate-producing bacterium SSC/2]
gi|429181301|gb|EKY22473.1| tRNA pseudouridine synthase B [Anaerostipes hadrus DSM 3319]
Length = 299
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 193 RLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCI-GEYEEFLIRLIYD 251
++N ++ Y++AR+G I + +Y + + P+ T+ V C G Y L R D
Sbjct: 121 KINGKKLYELAREGKIIERKPERIRIYDISDIEISYPEVTMTVTCSKGTYIRSLCR---D 177
Query: 252 LGTKLRSAAICTSIQCIRFAQFGLEHS 278
+G KL++ A T + R + F LE++
Sbjct: 178 IGHKLQNGACMTKLVRTRSSGFQLEYA 204
>gi|206890408|ref|YP_002248399.1| tRNA pseudouridine synthase B [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742346|gb|ACI21403.1| tRNA pseudouridine synthase B [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 302
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ V++ + +++AR+G K+ +++ +K F+PP T V C ++ L
Sbjct: 118 SAVKVGGKPLHELARKGVEIERKPKKVIIHSIKIESFEPPFVTFRVVC--SKGTYVRSLC 175
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
+D+G KLR A + R +F +E S+
Sbjct: 176 HDIGEKLRIGAHIVELTRTRIGEFRVEESI 205
>gi|345516465|ref|ZP_08795956.1| tRNA pseudouridine synthase B [Bacteroides dorei 5_1_36/D4]
gi|345455509|gb|EEO48217.2| tRNA pseudouridine synthase B [Bacteroides dorei 5_1_36/D4]
Length = 241
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 194 LNSQEAYDIARQGP---IRPALLKEPVVYGLKCVHFKPPDFTIEVHCI-GEYEEFLIRLI 249
+N + AYD+AR+G +RP LL + L C P+ TI V C G Y L R
Sbjct: 134 VNGERAYDLARRGEEVNLRPKLLVIDEIELLDC-RLDVPEITIRVVCSKGTYIRALAR-- 190
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
D+G L S A T+++ R + +E L
Sbjct: 191 -DIGEALHSGAHLTALRRTRVGEVRVEDCL 219
>gi|317471565|ref|ZP_07930912.1| tRNA pseudouridine synthase B [Anaerostipes sp. 3_2_56FAA]
gi|316900968|gb|EFV22935.1| tRNA pseudouridine synthase B [Anaerostipes sp. 3_2_56FAA]
Length = 253
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCI-GEYEEFLIRL 248
+ +++N ++ Y++AR+G + + +Y +K + P+FT+ V C G Y L R
Sbjct: 120 SALKVNGKKLYELAREGKVIERKARPVTIYEIKNLEICLPEFTMTVVCSKGTYIRSLGR- 178
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
D+G KL A TS++ R A G H + H ++ +
Sbjct: 179 --DIGEKLGCGACMTSLE--RTAASGF-------HKKDSHTLDEV 212
>gi|404493178|ref|YP_006717284.1| tRNA pseudouridine 55 synthase [Pelobacter carbinolicus DSM 2380]
gi|91208088|sp|Q3A4A3.1|TRUB_PELCD RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|77545242|gb|ABA88804.1| tRNA pseudouridine 55 synthase [Pelobacter carbinolicus DSM 2380]
Length = 306
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 200 YDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSA 259
Y +ARQG + ++ L+ + +PP+ T +VHC ++ + +D+G KL
Sbjct: 128 YKLARQGVEVSRKPRRITIFDLQLLAVEPPNITFDVHC--SKGTYVRTICHDIGVKLGCG 185
Query: 260 AICTSIQCIRFAQFGLEHSL 279
A T+++ +R A F ++ ++
Sbjct: 186 AHLTALRRLRSAPFDVKEAV 205
>gi|253686988|ref|YP_003016178.1| tRNA pseudouridine synthase B [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753566|gb|ACT11642.1| tRNA pseudouridine synthase B [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 314
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ ++ Y+ ARQG P +E VY L+ + ++ + +E+HC ++ +I
Sbjct: 127 SALKYQGRKLYEYARQGLTVPREAREITVYELQFIRWEGDELELEIHC--SKGTYIRTII 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEH 277
DLG KL A ++ ++ A + +E
Sbjct: 185 DDLGEKLGCGAHVIYLRRLQVATYPIER 212
>gi|300854504|ref|YP_003779488.1| tRNA pseudouridine synthase B [Clostridium ljungdahlii DSM 13528]
gi|300434619|gb|ADK14386.1| tRNA pseudouridine synthase B [Clostridium ljungdahlii DSM 13528]
Length = 293
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ +++N ++ YD+ARQG ++ +Y ++ ++ + P +V C ++ L
Sbjct: 118 SAIKINGKKLYDLARQGIEIERNKRKINIYSIEIINIELPYVVFQVKC--SKGTYIRSLC 175
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLL 280
+D+G KL I +++ + F + +S+L
Sbjct: 176 HDIGEKLNCGGIMWNLKRMATGNFNISNSIL 206
>gi|421081056|ref|ZP_15541970.1| tRNA pseudouridine synthase B [Pectobacterium wasabiae CFBP 3304]
gi|401704066|gb|EJS94275.1| tRNA pseudouridine synthase B [Pectobacterium wasabiae CFBP 3304]
Length = 314
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ ++ Y+ ARQG P +E VY L+ + ++ + +E+HC ++ +I
Sbjct: 127 SALKYQGRKLYEYARQGLTVPREAREITVYELQFIRWEGDELELEIHC--SKGTYIRTII 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEH 277
DLG KL A ++ ++ A++ E
Sbjct: 185 DDLGEKLGCGAHVIYLRRLQVAKYPTER 212
>gi|258648185|ref|ZP_05735654.1| tRNA pseudouridine synthase B [Prevotella tannerae ATCC 51259]
gi|260852069|gb|EEX71938.1| tRNA pseudouridine synthase B [Prevotella tannerae ATCC 51259]
Length = 249
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 8/143 (5%)
Query: 152 PPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPA 211
P D T + ++EAV K + +F + ++N AYD+AR+G
Sbjct: 94 PVDKTFSTAHITAESFEEAVRKFEGDILQVPPVF----SACKVNGDRAYDLARKGRDVQL 149
Query: 212 LLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFA 271
K + + + + PD+ +H + ++ L+ D+G L+S A TS++ R
Sbjct: 150 AAKPIRIEKIDILELRLPDYA-RLHIVCGKGTYIRSLVRDIGEALQSGAHMTSLRRTRVG 208
Query: 272 QFGLEHSLLR---KHWRVQHVIE 291
+E+ + W IE
Sbjct: 209 DISVENCFTLEAFEEWLAAQTIE 231
>gi|320159632|ref|YP_004172856.1| tRNA pseudouridine synthase B [Anaerolinea thermophila UNI-1]
gi|319993485|dbj|BAJ62256.1| tRNA pseudouridine synthase B [Anaerolinea thermophila UNI-1]
Length = 307
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ +++ ++AY++AR+G ++ VY L+ + + PP+ ++++C ++ L
Sbjct: 131 SAIKVQGRKAYEMAREGEEVDLAPRKIKVYSLELLEWAPPEAVVDIYC--SSGTYVRSLA 188
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSL-LRK 282
+DLG L A ++ + +F L ++ LRK
Sbjct: 189 HDLGQVLGCGAHLVGLRRTKSGRFTLRDAVPLRK 222
>gi|326335916|ref|ZP_08202093.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325691880|gb|EGD33842.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 236
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ + + Y++AR+G I + ++ L V + + + EVHC ++ L
Sbjct: 129 SAIKKDGKRLYELARKGEITEISPRNITIHSLNLVPYTEKELSFEVHC--SKGTYIRSLA 186
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
+D+G L S A +S++ +E++L
Sbjct: 187 HDIGKALGSGAYLSSLRRTHIGVHSVENAL 216
>gi|261496803|ref|ZP_05993177.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261307550|gb|EEY08879.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 307
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ N + Y+ AR G + ++ L + +K P T+EVHC ++ L+
Sbjct: 127 SALKHNGKPLYEYARAGITVEREARPITIFELNFIEYKAPFLTLEVHC--SKGTYIRTLV 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIEN--IAHNETLVDKMDPMR 307
DLG +L A T ++ A + +E + + +Q++ EN +A + + MD
Sbjct: 185 DDLGEELGCGAHVTMLRRTAVADYPIEKMM--SYADLQNLAENQPLAELDQHLLPMDTAV 242
Query: 308 PQLQSVNMTDSDS 320
L +N++ +
Sbjct: 243 SALAKINLSSEQT 255
>gi|346306477|ref|ZP_08848633.1| hypothetical protein HMPREF9457_00342 [Dorea formicigenerans
4_6_53AFAA]
gi|345897851|gb|EGX67748.1| hypothetical protein HMPREF9457_00342 [Dorea formicigenerans
4_6_53AFAA]
Length = 304
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ +++N ++ Y++AR+G + ++ ++ + P T++VHC ++ L
Sbjct: 119 SALKINGKKLYELAREGKTVERAARRVQIFDIEILSIALPRVTMKVHC--SKGTYIRTLC 176
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSL-------LRKHWRVQHVI 290
+D+G KL A + + ++F ++ SL L+K R+ ++
Sbjct: 177 HDIGQKLECGACMEKLTRTKVSRFEIKDSLTLAQIEILKKEDRLSEIL 224
>gi|254361248|ref|ZP_04977391.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica PHL213]
gi|261492528|ref|ZP_05989081.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|452745245|ref|ZP_21945081.1| tRNA pseudouridine synthase B [Mannheimia haemolytica serotype 6
str. H23]
gi|153092744|gb|EDN73787.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica PHL213]
gi|261311687|gb|EEY12837.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|452086638|gb|EME03025.1| tRNA pseudouridine synthase B [Mannheimia haemolytica serotype 6
str. H23]
Length = 307
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ N + Y+ AR G + ++ L + +K P T+EVHC ++ L+
Sbjct: 127 SALKHNGKPLYEYARAGITVEREARPITIFELNFIEYKAPFLTLEVHC--SKGTYIRTLV 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIEN--IAHNETLVDKMDPMR 307
DLG +L A T ++ A + +E + + +Q++ EN +A + + MD
Sbjct: 185 DDLGEELGCGAHVTMLRRTAVADYPIEKMM--SYADLQNLAENQPLAELDQHLLPMDTAV 242
Query: 308 PQLQSVNMTDSDS 320
L +N++ +
Sbjct: 243 SALAKINLSSEQT 255
>gi|420375622|ref|ZP_14875472.1| tRNA pseudouridine synthase B [Shigella flexneri 1235-66]
gi|391311693|gb|EIQ69325.1| tRNA pseudouridine synthase B [Shigella flexneri 1235-66]
Length = 314
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 146 KCVHFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQ 205
+ V +P FT L SAL ++ + +I ++ L + ++ Y+ ARQ
Sbjct: 94 QIVQERPVTFTAEQLASALETFRGDIEQIP---SMYSAL--------KYQGKKLYEYARQ 142
Query: 206 GPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSI 265
G P + VY L + + + +EVHC ++ ++ DLG KL A T +
Sbjct: 143 GIEVPREARPITVYELLFIRHEGNELELEVHC--SKGTYIRTIVDDLGEKLGCGAHVTYL 200
Query: 266 QCIRFAQFGLEHSLLRKHWR 285
+ + +++ ++ + +H R
Sbjct: 201 RRLTVSKYPVDRMVTLEHLR 220
>gi|237730086|ref|ZP_04560567.1| tRNA pseudouridine synthase B [Citrobacter sp. 30_2]
gi|365103234|ref|ZP_09333266.1| tRNA pseudouridine synthase B [Citrobacter freundii 4_7_47CFAA]
gi|226908692|gb|EEH94610.1| tRNA pseudouridine synthase B [Citrobacter sp. 30_2]
gi|363645573|gb|EHL84836.1| tRNA pseudouridine synthase B [Citrobacter freundii 4_7_47CFAA]
Length = 314
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 146 KCVHFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQ 205
+ V +P FT L SAL ++ + +I ++ L + ++ Y+ ARQ
Sbjct: 94 QIVQERPVTFTAEQLASALETFRGDIEQIP---SMYSAL--------KYQGKKLYEYARQ 142
Query: 206 GPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSI 265
G P + VY L + + + +EVHC ++ ++ DLG KL A T +
Sbjct: 143 GIEVPREARPITVYELLFIRHEGNELELEVHC--SKGTYIRTIVDDLGEKLGCGAHVTYL 200
Query: 266 QCIRFAQFGLEHSLLRKHWR 285
+ + +++ ++ + +H R
Sbjct: 201 RRLTVSKYPVDRMVTLEHLR 220
>gi|395227960|ref|ZP_10406285.1| tRNA pseudouridine synthase B [Citrobacter sp. A1]
gi|421846453|ref|ZP_16279601.1| tRNA pseudouridine synthase B [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424732927|ref|ZP_18161499.1| trna pseudouridine synthase b [Citrobacter sp. L17]
gi|394718456|gb|EJF24086.1| tRNA pseudouridine synthase B [Citrobacter sp. A1]
gi|411772330|gb|EKS55956.1| tRNA pseudouridine synthase B [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422892743|gb|EKU32596.1| trna pseudouridine synthase b [Citrobacter sp. L17]
Length = 314
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 146 KCVHFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQ 205
+ V +P FT L SAL ++ + +I ++ L + ++ Y+ ARQ
Sbjct: 94 QIVQERPVTFTAEQLASALETFRGDIEQIP---SMYSAL--------KYQGKKLYEYARQ 142
Query: 206 GPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSI 265
G P + VY L + + + +EVHC ++ ++ DLG KL A T +
Sbjct: 143 GIEVPREARPITVYELLFIRHEGNELELEVHC--SKGTYIRTIVDDLGEKLGCGAHVTYL 200
Query: 266 QCIRFAQFGLEHSLLRKHWR 285
+ + +++ ++ + +H R
Sbjct: 201 RRLTVSKYPVDRMVTLEHLR 220
>gi|339319751|ref|YP_004679446.1| tRNA pseudouridine synthase B [Candidatus Midichloria mitochondrii
IricVA]
gi|338225876|gb|AEI88760.1| tRNA pseudouridine synthase B [Candidatus Midichloria mitochondrii
IricVA]
Length = 293
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
R + + +N + AY +AR G + +E + G+K ++ T EV C + F +R
Sbjct: 105 RYSALHINGKRAYGMARAGQEFSLVEREVFLRGIKLINHVNDTTTFEVSC---GKGFYVR 161
Query: 248 -LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPM 306
L D+ KLR+ + ++ I+ +F S+ K + ++ N E L D + P+
Sbjct: 162 SLARDIADKLRACGHVSYLRRIKIGKFTQFDSI--KLDYLLQLVHNARQLEVLFDFLQPV 219
Query: 307 RPQLQSV 313
L +
Sbjct: 220 NALLDDI 226
>gi|403057054|ref|YP_006645271.1| tRNA pseudouridine synthase B [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402804380|gb|AFR02018.1| tRNA pseudouridine synthase B [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 314
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ ++ Y+ ARQG P +E VY L+ + ++ + +E+HC ++ +I
Sbjct: 127 SALKYQGRKLYEYARQGLTVPREAREITVYELQFIRWEGDELELEIHC--SKGTYIRTII 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEH 277
DLG KL A ++ ++ A + E
Sbjct: 185 DDLGEKLGCGAHVIYLRRLQVATYPTER 212
>gi|227112577|ref|ZP_03826233.1| tRNA pseudouridine synthase B [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 314
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ ++ Y+ ARQG P +E VY L+ + ++ + +E+HC ++ +I
Sbjct: 127 SALKYQGRKLYEYARQGLTVPREAREITVYELQFIRWEGDELELEIHC--SKGTYIRTII 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEH 277
DLG KL A ++ ++ A + E
Sbjct: 185 DDLGEKLGCGAHVIYLRRLQVATYPTER 212
>gi|387771663|ref|ZP_10127821.1| tRNA pseudouridine synthase B [Haemophilus parahaemolyticus HK385]
gi|386908523|gb|EIJ73216.1| tRNA pseudouridine synthase B [Haemophilus parahaemolyticus HK385]
Length = 305
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ N + Y+ ARQG + ++ LK V ++ P ++EVHC ++ L+
Sbjct: 127 SALKHNGKPLYEYARQGITVEREARPITIFELKFVEYQAPYLSLEVHC--SKGTYIRTLV 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNE--TLVDKMDPMR 307
DLG L A + ++ + A + ++ + + +Q + E+ E L+ MD
Sbjct: 185 DDLGEVLGCGAHVSVLRRLAVADYPVKEMMPIEE--LQLLAESFPQQELDRLLLPMDTAV 242
Query: 308 PQLQSVNMTDSDS 320
L ++N+T+S +
Sbjct: 243 ASLAALNLTESQT 255
>gi|226323224|ref|ZP_03798742.1| hypothetical protein COPCOM_00996 [Coprococcus comes ATCC 27758]
gi|225208414|gb|EEG90768.1| tRNA pseudouridine synthase B [Coprococcus comes ATCC 27758]
Length = 302
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ +++N ++ Y++AR+G + ++ ++ + P+ +EV C ++ L
Sbjct: 119 SALKVNGKKLYELAREGKEVERKARRITIHEIRILEINLPEVKLEVTC--SKGTYIRTLC 176
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETL-VDKMDPMRP 308
+D+G KL + R +FGLE S +R Q E I + + +D+M P
Sbjct: 177 HDIGQKLGCGGCMKELLRTRVERFGLEDS-IRLGEIAQLQKEGILEEKIIAIDEMFPTYA 235
Query: 309 QL 310
Q+
Sbjct: 236 QV 237
>gi|385870315|gb|AFI88835.1| tRNA pseudouridine synthase B [Pectobacterium sp. SCC3193]
Length = 314
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ ++ Y+ ARQG P +E VY L+ + ++ + +E+HC ++ +I
Sbjct: 127 SALKYQGRKLYEYARQGLTVPREAREITVYELQFIRWEGDELELEIHC--SKGTYIRTII 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEH 277
DLG KL A ++ ++ A + E
Sbjct: 185 DDLGEKLGCGAHVIYLRRLQVAAYPTER 212
>gi|296122474|ref|YP_003630252.1| tRNA pseudouridine synthase B [Planctomyces limnophilus DSM 3776]
gi|296014814|gb|ADG68053.1| tRNA pseudouridine synthase B [Planctomyces limnophilus DSM 3776]
Length = 313
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHC-IGEYEEFLI 246
R + V + + AYD+AR G K V+ L + PD +++ C G Y L
Sbjct: 117 RFSAVHVAGKRAYDLARSGQDFELTPKTVEVHQLALTKYANPDIELQIECGSGTYIRSLA 176
Query: 247 RLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
R DLG KL+ A +++ F L+ +L
Sbjct: 177 R---DLGEKLQCGAYMSALTRTHIGPFHLDSAL 206
>gi|227327829|ref|ZP_03831853.1| tRNA pseudouridine synthase B [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 314
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ ++ Y+ ARQG P +E VY L+ + ++ + +E+HC ++ +I
Sbjct: 127 SALKYQGRKLYEYARQGLTVPREAREITVYELQFIRWEGDELELEIHC--SKGTYIRTII 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEH 277
DLG KL A ++ ++ A + E
Sbjct: 185 DDLGEKLGCGAHVIYLRRLQVATYPTER 212
>gi|261820130|ref|YP_003258236.1| tRNA pseudouridine synthase B [Pectobacterium wasabiae WPP163]
gi|261604143|gb|ACX86629.1| tRNA pseudouridine synthase B [Pectobacterium wasabiae WPP163]
Length = 314
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
+ ++ ++ Y+ ARQG P +E VY L+ + ++ + +E+HC ++ +I
Sbjct: 127 SALKYQGRKLYEYARQGLTVPREAREITVYELQFIRWEGDELELEIHC--SKGTYIRTII 184
Query: 250 YDLGTKLRSAAICTSIQCIRFAQFGLEH 277
DLG KL A ++ ++ A + E
Sbjct: 185 DDLGEKLGCGAHVIYLRRLQVAAYPTER 212
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,364,389,938
Number of Sequences: 23463169
Number of extensions: 217677514
Number of successful extensions: 418728
Number of sequences better than 100.0: 291
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 418357
Number of HSP's gapped (non-prelim): 462
length of query: 336
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 193
effective length of database: 9,003,962,200
effective search space: 1737764704600
effective search space used: 1737764704600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)