Query psy4559
Match_columns 336
No_of_seqs 247 out of 1338
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 20:07:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00130 truB tRNA pseudouridi 100.0 3.1E-52 6.6E-57 398.5 13.0 196 70-304 34-230 (290)
2 PRK14124 tRNA pseudouridine sy 100.0 1.8E-51 3.8E-56 396.0 13.3 193 71-304 36-229 (308)
3 PRK04642 truB tRNA pseudouridi 100.0 4.4E-51 9.6E-56 391.9 11.9 195 71-304 43-243 (300)
4 PRK02755 truB tRNA pseudouridi 100.0 8.2E-51 1.8E-55 389.4 12.0 195 71-304 36-235 (295)
5 PRK01851 truB tRNA pseudouridi 100.0 9.6E-51 2.1E-55 390.1 12.4 194 71-304 49-246 (303)
6 PRK05389 truB tRNA pseudouridi 100.0 1.2E-50 2.7E-55 389.7 12.6 195 70-304 45-245 (305)
7 PRK01528 truB tRNA pseudouridi 100.0 1.4E-50 3E-55 387.4 12.4 194 71-304 36-235 (292)
8 PRK01550 truB tRNA pseudouridi 100.0 2.8E-50 6E-55 387.2 13.1 195 71-304 35-241 (304)
9 PRK05033 truB tRNA pseudouridi 100.0 3.8E-50 8.2E-55 387.3 12.9 194 71-304 43-250 (312)
10 PRK14123 tRNA pseudouridine sy 100.0 3.7E-50 8E-55 386.4 12.1 197 71-304 36-242 (305)
11 TIGR00431 TruB tRNA pseudourid 100.0 1.1E-49 2.5E-54 365.7 13.1 175 70-284 34-209 (209)
12 PRK02484 truB tRNA pseudouridi 100.0 6.8E-50 1.5E-54 383.0 11.9 195 71-304 36-241 (294)
13 cd02573 PseudoU_synth_EcTruB P 100.0 6.9E-50 1.5E-54 380.2 11.7 196 70-304 32-233 (277)
14 PRK03287 truB tRNA pseudouridi 100.0 1.9E-49 4.1E-54 380.5 12.1 202 70-319 41-248 (298)
15 PRK00020 truB tRNA pseudouridi 100.0 1.9E-49 4.1E-54 371.3 11.2 178 71-285 43-221 (244)
16 PRK14846 truB tRNA pseudouridi 100.0 4.2E-49 9.1E-54 382.8 12.1 202 71-319 36-243 (345)
17 cd00506 PseudoU_synth_TruB_lik 100.0 1E-48 2.2E-53 359.5 13.5 175 71-284 33-210 (210)
18 PRK00989 truB tRNA pseudouridi 100.0 5.8E-49 1.3E-53 365.3 11.4 178 71-289 42-221 (230)
19 cd02868 PseudoU_synth_hTruB2_l 100.0 3.2E-48 7E-53 359.5 15.4 191 66-293 33-226 (226)
20 PRK14122 tRNA pseudouridine sy 100.0 9.1E-49 2E-53 377.6 12.1 176 71-285 34-244 (312)
21 PRK04099 truB tRNA pseudouridi 100.0 2.6E-47 5.6E-52 361.9 13.0 175 70-284 34-209 (273)
22 PRK02193 truB tRNA pseudouridi 100.0 2.9E-47 6.3E-52 362.6 12.6 169 70-277 32-203 (279)
23 cd02867 PseudoU_synth_TruB_4 P 100.0 5.3E-44 1.2E-48 344.6 14.0 182 71-291 62-249 (312)
24 COG0130 TruB Pseudouridine syn 100.0 1.9E-39 4.1E-44 308.0 5.8 173 71-321 48-224 (271)
25 PRK04270 H/ACA RNA-protein com 100.0 3.4E-36 7.4E-41 288.7 10.4 161 70-304 54-226 (300)
26 TIGR00425 CBF5 rRNA pseudourid 100.0 1E-35 2.2E-40 288.3 10.2 160 71-304 67-238 (322)
27 PF01509 TruB_N: TruB family p 100.0 8.7E-36 1.9E-40 261.1 7.7 136 71-245 13-149 (149)
28 cd02572 PseudoU_synth_hDyskeri 100.0 4.6E-35 1E-39 263.7 9.4 141 70-284 34-178 (182)
29 KOG2559|consensus 99.9 6.4E-27 1.4E-31 219.6 11.0 163 153-326 141-306 (318)
30 cd02867 PseudoU_synth_TruB_4 P 99.5 2.5E-15 5.4E-20 146.0 0.8 159 91-276 122-291 (312)
31 TIGR00431 TruB tRNA pseudourid 98.5 5.4E-08 1.2E-12 90.4 3.8 83 91-188 94-176 (209)
32 PF01509 TruB_N: TruB family p 98.5 2.1E-08 4.6E-13 88.4 0.8 69 90-158 72-140 (149)
33 KOG2559|consensus 98.5 7.5E-08 1.6E-12 91.8 4.3 87 89-188 142-228 (318)
34 PRK00130 truB tRNA pseudouridi 98.4 1.2E-07 2.6E-12 91.8 3.5 82 91-187 95-176 (290)
35 cd00506 PseudoU_synth_TruB_lik 98.4 1.2E-07 2.7E-12 88.0 3.1 84 91-187 93-176 (210)
36 PRK04099 truB tRNA pseudouridi 98.4 1.4E-07 3E-12 90.8 3.4 84 90-188 93-176 (273)
37 PRK14124 tRNA pseudouridine sy 98.4 1.6E-07 3.4E-12 91.7 3.4 83 90-187 94-176 (308)
38 PRK01851 truB tRNA pseudouridi 98.4 1.6E-07 3.4E-12 91.6 3.3 83 90-187 107-189 (303)
39 cd02573 PseudoU_synth_EcTruB P 98.4 1.8E-07 4E-12 90.0 3.4 83 90-187 92-176 (277)
40 PRK02193 truB tRNA pseudouridi 98.4 2.9E-07 6.4E-12 88.8 3.8 83 90-187 92-176 (279)
41 PRK00989 truB tRNA pseudouridi 98.3 2.9E-07 6.3E-12 86.7 3.0 83 90-188 101-183 (230)
42 PRK00020 truB tRNA pseudouridi 98.3 2.8E-07 6.1E-12 87.5 2.7 82 91-187 105-186 (244)
43 PRK05033 truB tRNA pseudouridi 98.3 3.1E-07 6.7E-12 89.9 2.8 83 90-187 101-183 (312)
44 PRK05389 truB tRNA pseudouridi 98.3 3.7E-07 8E-12 89.1 3.3 83 90-187 104-187 (305)
45 PRK02755 truB tRNA pseudouridi 98.3 3.8E-07 8.2E-12 88.7 3.2 82 91-187 95-179 (295)
46 PRK01528 truB tRNA pseudouridi 98.3 5.4E-07 1.2E-11 87.5 3.3 83 90-187 94-178 (292)
47 cd02868 PseudoU_synth_hTruB2_l 98.2 8.6E-07 1.9E-11 83.1 4.2 84 91-187 100-183 (226)
48 PRK14123 tRNA pseudouridine sy 98.2 8E-07 1.7E-11 86.8 3.3 82 91-187 98-184 (305)
49 PRK14846 truB tRNA pseudouridi 98.2 9.1E-07 2E-11 87.6 3.3 86 90-188 94-179 (345)
50 PRK02484 truB tRNA pseudouridi 98.2 1.2E-06 2.6E-11 85.2 3.2 83 90-187 96-184 (294)
51 PRK14122 tRNA pseudouridine sy 98.1 1.2E-06 2.5E-11 85.9 3.0 63 90-152 93-155 (312)
52 PRK01550 truB tRNA pseudouridi 98.1 1.5E-06 3.3E-11 84.8 3.8 88 91-187 96-183 (304)
53 TIGR01213 conserved hypothetic 98.1 1.7E-06 3.8E-11 86.8 3.6 94 148-270 283-385 (388)
54 PRK03287 truB tRNA pseudouridi 98.1 1.8E-06 3.9E-11 84.1 3.1 87 90-188 101-188 (298)
55 PRK04642 truB tRNA pseudouridi 98.1 1.8E-06 3.8E-11 84.2 2.6 82 91-187 103-184 (300)
56 PRK14554 putative pseudouridyl 97.9 1.1E-05 2.5E-10 81.9 4.7 120 114-270 290-418 (422)
57 KOG2529|consensus 97.9 1.2E-05 2.5E-10 81.0 4.6 150 158-320 123-285 (395)
58 KOG2529|consensus 95.4 0.0018 3.9E-08 65.6 -2.5 192 69-283 99-312 (395)
59 COG1258 Predicted pseudouridyl 94.6 0.056 1.2E-06 54.9 5.4 95 148-271 288-391 (398)
60 cd02572 PseudoU_synth_hDyskeri 86.1 1 2.2E-05 41.3 4.2 64 91-186 77-142 (182)
61 PRK04270 H/ACA RNA-protein com 84.1 0.63 1.4E-05 45.6 2.0 66 91-188 97-162 (300)
62 COG0130 TruB Pseudouridine syn 81.0 0.9 1.9E-05 44.3 1.8 68 91-188 91-158 (271)
63 TIGR00425 CBF5 rRNA pseudourid 73.8 2.2 4.7E-05 42.4 2.2 64 91-186 109-172 (322)
64 cd01291 PseudoU_synth PseudoU_ 66.8 8.7 0.00019 30.2 3.8 34 218-253 52-87 (87)
65 PRK10700 23S rRNA pseudouridyl 64.4 27 0.00059 34.0 7.5 79 203-289 156-237 (289)
66 COG1187 RsuA 16S rRNA uridine- 57.7 91 0.002 30.2 9.7 80 197-284 148-230 (248)
67 PHA01516 hypothetical protein 54.5 5.3 0.00012 32.9 0.6 11 6-16 3-13 (98)
68 PRK10475 23S rRNA pseudouridin 45.9 94 0.002 30.4 7.8 53 231-290 175-230 (290)
69 cd02556 PseudoU_synth_RluB Pse 41.8 1.2E+02 0.0026 26.7 7.3 59 220-284 104-162 (167)
70 TIGR00093 pseudouridine syntha 29.6 1.9E+02 0.0041 24.3 6.3 58 221-285 67-124 (128)
71 cd02554 PseudoU_synth_RluF Pse 24.4 1.4E+02 0.003 26.8 4.8 46 232-284 109-154 (164)
72 PF14714 KH_dom-like: KH-domai 23.8 3.2E+02 0.007 21.7 6.3 61 203-263 14-75 (80)
73 PRK10839 16S rRNA pseudouridyl 21.8 97 0.0021 28.6 3.3 48 232-285 173-220 (232)
74 cd00474 SUI1_eIF1 The SUI1/eIF 20.6 1.3E+02 0.0029 23.9 3.4 21 244-264 27-47 (77)
75 cd02553 PseudoU_synth_RsuA Pse 20.6 1.7E+02 0.0038 25.8 4.6 49 231-285 112-160 (167)
No 1
>PRK00130 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.1e-52 Score=398.50 Aligned_cols=196 Identities=16% Similarity=0.308 Sum_probs=180.0
Q ss_pred eeecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceee
Q psy4559 70 VSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148 (336)
Q Consensus 70 ~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI 148 (336)
.--|||+|+||||+ |+|+|||+++++.+.+ .+.....+|..|||.|.. |++..+
T Consensus 34 ~GTLDP~AtGvL~v-------~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D~~-----G~i~~~------------- 88 (290)
T PRK00130 34 TGTLDPLASGVLPV-------CLGKATKIVDYLMEGKKTYRAEIKLGVETDTYDRE-----GEILKE------------- 88 (290)
T ss_pred CCCCCCCCeeEEEE-------EEChhhhhHHHhccCCcEEEEEEEECCcccCCCCC-----CCEEEe-------------
Confidence 34699999999999 9999999999999854 677777799999999995 887642
Q ss_pred eeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC
Q psy4559 149 HFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP 228 (336)
Q Consensus 149 ~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~ 228 (336)
...++++.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||+|++++|+.
T Consensus 89 -~~~~~~t~~~l~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~ 156 (290)
T PRK00130 89 -KEVSHLTEEEIREAILSFQGEIDQVPP---------M--YSALKINGKKLYELARQGIEVEREARKITIYDIEILEIDL 156 (290)
T ss_pred -cCCCCCCHHHHHHHHHHccCeEEEECC---------h--HHeEecCCHhHHHHHHCCCccccCceEEEEEEEEEEEEeC
Confidence 122358999999999999999999999 8 9999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChhHHHHHhhhhhhhhcccC
Q psy4559 229 PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMD 304 (336)
Q Consensus 229 p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~~I~~~i~~~~~lL~~~p 304 (336)
|.++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|+++++|+.+++.+++.+++.+|.++|
T Consensus 157 ~~~~~~v~cskG--TYIRsL~~Dig~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~l~p~~~~l~~lp 230 (290)
T PRK00130 157 PYVIFDVKCSKG--TYIRSLCFDIGEKLNCGAYMWNLIRTETGPFNIENSITLEDLNEENIEDYIIPIDKALKHYP 230 (290)
T ss_pred CeEEEEEEECCC--CCHHHHHHHHHHHHCCCEEEEEEEeEEECCCCHHHcCCHHHHhhhhhhhhccCHHHHHhhCC
Confidence 999999999999 99999999999999999999999999999999999999999987777778888998887766
No 2
>PRK14124 tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.8e-51 Score=395.96 Aligned_cols=193 Identities=17% Similarity=0.296 Sum_probs=178.7
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|+|||+++++.+.+ .+.....+|+.|||.|.. |++..
T Consensus 36 GTLDP~AtGvL~v-------~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D~~-----G~vi~--------------- 88 (308)
T PRK14124 36 GTLDPFATGVLIV-------GVNKATRLLEYLKNEKKVYYVKMRLGLITETFDIT-----GEVVE--------------- 88 (308)
T ss_pred cCCCCCCcEEEEE-------EEChHHhhhHHHhcCCceEEEEEEeCccccCCCCC-----CCEEE---------------
Confidence 4699999999999 9999999999999754 677777799999999995 88764
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecCC
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~p 229 (336)
..+.+++.+++++++..|+|++.|+|| | |||+|+||+|||||||+|++||+++|+|+||+|++++|+.|
T Consensus 89 ~~~~~~~~~~i~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~ 157 (308)
T PRK14124 89 ERECNVTEEEIREAIFSFVGEYKQVPP---------A--YSAKKYKGERLYKLAREGKIINLPPKEVKIYEIWDISIEGP 157 (308)
T ss_pred ecCCCCCHHHHHHHHHhCcCeEEEeCC---------c--hHeEEECChhHHHHHhCCCccccCceeeEEEEEEEEEEeCC
Confidence 233458999999999999999999999 8 99999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChhHHHHHhhhhhhhhcccC
Q psy4559 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMD 304 (336)
Q Consensus 230 ~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~~I~~~i~~~~~lL~~~p 304 (336)
.|+|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|+++++|+.+++.+.+.+++.+|. +|
T Consensus 158 ~~~~~v~cskG--TYIRsL~~DiG~~Lg~~a~m~~LrRt~~G~f~l~~a~~l~~l~~~~~~~~llp~~~~l~-lp 229 (308)
T PRK14124 158 DVSFRVEVSPG--TYIRSLCMDIGYKLGCGATAVELVRLSVGKFSIEDSINVFEVSPEEIENRIIPMEEILD-LP 229 (308)
T ss_pred eEEEEEEECCC--CCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHccCHHHhhhhhhhhhcCCHHHHhC-Cc
Confidence 99999999999 99999999999999999999999999999999999999999988777778888888886 66
No 3
>PRK04642 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=4.4e-51 Score=391.88 Aligned_cols=195 Identities=16% Similarity=0.253 Sum_probs=173.5
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|+|||+++|+.+.+ .+.....+|+.|||.|+. |++...
T Consensus 43 GTLDP~AtGvL~v-------~~G~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D~~-----G~v~~~-------------- 96 (300)
T PRK04642 43 GSLDPLATGLLPL-------CFGEATKIAGLLLGSAKAYDAEIVLGVTTDTDDAD-----GQVLRE-------------- 96 (300)
T ss_pred CccCCcCeeeEEE-------EEChhhhhhHHhcCCCcEEEEEEEECccccCcCCC-----CCEEEe--------------
Confidence 4699999999999 9999999999999754 677777799999999995 987642
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecCC
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~p 229 (336)
...++++.+++++++..|.|++.|+|| | |||+|+||+|||||||+|++||+++|+|+||++++++|+.|
T Consensus 97 ~~~~~~~~~~l~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkrlY~lAR~G~~ve~~~R~v~I~~~~ll~~~~~ 165 (300)
T PRK04642 97 RPVPDLSAAALQAALAPLIGRIRQRAP---------I--YSALKQGGEPLYAKARRGEVIEAPVREVEVHAIEVLGYAAP 165 (300)
T ss_pred cCCCCCCHHHHHHHHHHCCCcEEEeCC---------c--hHeEeECCeeHHHHHhCCCccccCcEEEEEEEEEEEEEeCC
Confidence 122357999999999999999999999 8 99999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChh-----HHHHHhhhhhhhhcccC
Q psy4559 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQ-----HVIENIAHNETLVDKMD 304 (336)
Q Consensus 230 ~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~-----~I~~~i~~~~~lL~~~p 304 (336)
.++|+|+||+| |||||||+|||.+|||+|||++||||++|+|++++|++++++... ++.+.+.+.+.+|.++|
T Consensus 166 ~~~~~v~cskG--TYIRSL~~Dig~~Lg~~a~m~~L~Rt~~G~f~~~~a~~l~~l~~~~~~~~~~~~~l~p~~~~l~~lp 243 (300)
T PRK04642 166 RLRLRVTCGSG--TYIRSLARDLGEVLGCGAHIAALRRLWVEPFRAPQMITLEALEAALEAGAEADTLLLPLAAGLADFP 243 (300)
T ss_pred EEEEEEEeCCC--cCHHHHHHHHHHHhCCCEEEEEeEeeEECCcchHHCccHHHHHHhHhcccchhhcccCHHHHHhhCC
Confidence 99999999999 999999999999999999999999999999999999998887531 13345667777776655
No 4
>PRK02755 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=8.2e-51 Score=389.44 Aligned_cols=195 Identities=16% Similarity=0.304 Sum_probs=170.4
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHF 150 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~ 150 (336)
--|||+|+||||+ |+|+|||+++|+.+.+.+.....+|..|||.|+. |++..+ .
T Consensus 36 GTLDP~AtGvL~i-------~vG~aTkl~~~l~~~K~Y~a~~~lG~~TdT~D~~-----G~v~~~--------------~ 89 (295)
T PRK02755 36 GTLDPAATGVLPI-------ALGKATRLLPYLPGEKTYRGTIRFGVRTSTDDLQ-----GEILSS--------------Q 89 (295)
T ss_pred CCCCCcCeeEEEE-------EEChhhhhHHHhCCCcEEEEEEEECCcccCCCCC-----CCEEEe--------------c
Confidence 4699999999999 9999999999999866777788899999999995 887642 1
Q ss_pred CCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC--
Q psy4559 151 KPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP-- 228 (336)
Q Consensus 151 ~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~-- 228 (336)
..++++.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||++++++|+.
T Consensus 90 ~~~~~~~~~l~~~l~~f~G~i~Q~PP---------~--ySAvKv~G~r~Y~lAR~G~~ve~~~r~v~I~~~~l~~~~~~~ 158 (295)
T PRK02755 90 PWPHLSLAEIETALPQFRGKIEQRPP---------Q--YSAIQVDGERLYALARRGETMELPARTVTIFRLQLLDWRPGD 158 (295)
T ss_pred CCCCCCHHHHHHHHHhccCeEEEeCC---------h--hheEeeCCHhHHHHHHCCCccccCceEEEEEEEEEEEEcCCC
Confidence 23358999999999999999999999 8 9999999999999999999999999999999999999965
Q ss_pred -CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChhH--HHHHhhhhhhhhcccC
Q psy4559 229 -PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQH--VIENIAHNETLVDKMD 304 (336)
Q Consensus 229 -p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~~--I~~~i~~~~~lL~~~p 304 (336)
|.++|+|+|||| |||||||||||.+|||+|||++||||++|+|++++|+++++++... ....+.+++.+|.++|
T Consensus 159 ~~~~~~~v~cskG--TYIRsL~~DiG~~Lg~~a~m~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~~~llp~~~~l~~lp 235 (295)
T PRK02755 159 QPELDLEIHCGAG--TYIRSLARDLGAVLGTGGTLAALRRTQSLGFHLAQSLPLPELENQLQAGTFPLLPPDLALQHLP 235 (295)
T ss_pred CceEEEEEEECCC--cCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHHHHhhhhcccceecCHHHHHccCC
Confidence 899999999999 9999999999999999999999999999999999999877764211 0012455555555544
No 5
>PRK01851 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=9.6e-51 Score=390.10 Aligned_cols=194 Identities=19% Similarity=0.271 Sum_probs=172.7
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|++||+++++.+.+ .+.....+|..|||.|+. |++..
T Consensus 49 GTLDP~AtGvL~v-------~vG~aTkl~~~l~~~~K~Y~~~~~lG~~TdT~D~~-----G~v~~--------------- 101 (303)
T PRK01851 49 GTLDPLATGLLPL-------CFGEATKFSQDLLDADKTYEATLRLGVRTSTGDAE-----GEVLA--------------- 101 (303)
T ss_pred CCCCCCCceEEEE-------EECHHHhhhHHhcccCeEEEEEEEECCccCCCCCC-----CCEEe---------------
Confidence 4699999999999 9999999999999855 677777799999999995 88764
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecCC
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~p 229 (336)
..+..++.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||+|++++|+.|
T Consensus 102 ~~~~~~t~~~i~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~~ 170 (303)
T PRK01851 102 TRPVDCDPAALEAALARFTGEIRQVPP---------M--YSALKKDGKPLYEYARAGITVEREARDVTIHALDLLACDLP 170 (303)
T ss_pred ecCCCCCHHHHHHHHHhccCeeeeeCC---------c--hheEeeCCeeHHHHHhCCCccccCCcceEEEEEEEEEEeCC
Confidence 233348999999999999999999999 8 99999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChh---HHHHHhhhhhhhhcccC
Q psy4559 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQ---HVIENIAHNETLVDKMD 304 (336)
Q Consensus 230 ~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~---~I~~~i~~~~~lL~~~p 304 (336)
.++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|++++++... ...+.+.+.+.+|.++|
T Consensus 171 ~~~~~v~cskG--TYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~~~~l~p~~~~l~~lp 246 (303)
T PRK01851 171 DVTIRVTCSKG--TYIRTLAEDIGEALGCGAHLTALRRTGVGGLTLEQAVTLEALEAADEAERDALLAPVDALLSTFP 246 (303)
T ss_pred EEEEEEEECCC--CCHHHHHHHHHHHHCCCEEEEEEEeEEECCCchHHcCCHHHHHhchhhhhhhhcCCHHHHHhhCC
Confidence 99999999999 999999999999999999999999999999999999988877421 12235666666666655
No 6
>PRK05389 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.2e-50 Score=389.73 Aligned_cols=195 Identities=16% Similarity=0.223 Sum_probs=173.5
Q ss_pred eeecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceee
Q psy4559 70 VSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148 (336)
Q Consensus 70 ~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI 148 (336)
.--|||+|+||||+ |+|++||+++++.+.+ .+.....+|..|||.|.. |++..
T Consensus 45 ~GTLDP~AtGvL~v-------~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D~~-----G~v~~-------------- 98 (305)
T PRK05389 45 AGTLDPLASGVLPI-------ALGEATKTVPYVMDGTKRYRFTVAWGEERDTDDLE-----GEVTA-------------- 98 (305)
T ss_pred cccCCCCCceEEEE-------EEChhhhhhHHhccCCcEEEEEEEECCcccCCCCC-----CCEEE--------------
Confidence 34699999999999 9999999999999864 677777899999999995 88664
Q ss_pred eeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeee-c
Q psy4559 149 HFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHF-K 227 (336)
Q Consensus 149 ~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~-~ 227 (336)
..+..++.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||+|++++| +
T Consensus 99 -~~~~~~~~~~i~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~ 166 (305)
T PRK05389 99 -TSDVRPTDEEIRAALPAFTGEIMQVPP---------Q--FSAIKIDGERAYDLAREGETVELPARPVEIDRLTLVERPD 166 (305)
T ss_pred -ecCCCCCHHHHHHHHHhccceEEEeCC---------c--hheEEECCHhHHHHHHCCCccccCceEEEEEEEEEEEecC
Confidence 233458999999999999999999999 8 99999999999999999999999999999999999999 5
Q ss_pred CCeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChh----HHHHHhhhhhhhhccc
Q psy4559 228 PPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQ----HVIENIAHNETLVDKM 303 (336)
Q Consensus 228 ~p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~----~I~~~i~~~~~lL~~~ 303 (336)
.|.++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|++++++... .+.+.+.+++.+|.++
T Consensus 167 ~~~~~~~v~cskG--TYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~~~~~l~p~~~~l~~l 244 (305)
T PRK05389 167 ADHAVFEVECGKG--TYVRSLARDLGRALGCYGHIAALRRTRVGPFTEEDAITLEKLEALARFAALDALLLPVETALDDL 244 (305)
T ss_pred CCeEEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEEEeEEECCCcHHHccCHHHHHhcccccchhhhcCCHHHHHccC
Confidence 7999999999999 999999999999999999999999999999999999988887431 2444566777777665
Q ss_pred C
Q psy4559 304 D 304 (336)
Q Consensus 304 p 304 (336)
|
T Consensus 245 p 245 (305)
T PRK05389 245 P 245 (305)
T ss_pred C
Confidence 5
No 7
>PRK01528 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.4e-50 Score=387.39 Aligned_cols=194 Identities=18% Similarity=0.266 Sum_probs=172.3
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|+|||+++++.+.+ .+.....+|+.|||.|+. |++..
T Consensus 36 GTLDP~AtGvL~v-------~vG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~D~~-----G~v~~--------------- 88 (292)
T PRK01528 36 GTLDVEAEGVLPL-------AVGEATKLVQLLIDAKKTYIFTVKFGKQTDSGDYA-----GKVIA--------------- 88 (292)
T ss_pred ccCCCcCceEEEE-------EEChHhhhhHHHhcCCceEEEEEEECCcccCCCCC-----CCEEE---------------
Confidence 4699999999999 9999999999999855 677777799999999996 88764
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC-
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP- 228 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~- 228 (336)
..+..++.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||+|++++|+.
T Consensus 89 ~~~~~~~~e~l~~~l~~f~G~i~Q~PP---------~--ySAvKv~G~raYelAR~G~~vel~~r~v~I~~i~ll~~~~~ 157 (292)
T PRK01528 89 TKDYIPSKEEAYAVCSKFIGNITQIPP---------A--FSALKVNGVRAYKLAREGKEVELKPRNITIYDLKCLNFDEK 157 (292)
T ss_pred ecCCCCCHHHHHHHHHhccceEEeeCC---------h--hHeEEECCHhHHHHHhCCcccccCceeEEEEEEEEEEEcCC
Confidence 233346999999999999999999999 8 9999999999999999999999999999999999999975
Q ss_pred -CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChh---HHHHHhhhhhhhhcccC
Q psy4559 229 -PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQ---HVIENIAHNETLVDKMD 304 (336)
Q Consensus 229 -p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~---~I~~~i~~~~~lL~~~p 304 (336)
|.++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|+++++++.. .+.+.+.+++.+|.++|
T Consensus 158 ~~~~~~~v~cskG--TYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~l~~~llp~~~~l~~lp 235 (292)
T PRK01528 158 NATATYYTECSKG--TYIRTLAEDLALSLQSLGFVIELRRTQVGIFKEENAIRIKSSDAITKNSLEEKSIKIEAILDDIL 235 (292)
T ss_pred CcEEEEEEEECCC--ccHHHHHHHHHHHHCCceEEeEEEeEEECCccHHHcCCHHHHHhhhhhhhhhccCCHHHHHhhCC
Confidence 689999999999 999999999999999999999999999999999999998887521 23334667777776655
No 8
>PRK01550 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=2.8e-50 Score=387.18 Aligned_cols=195 Identities=16% Similarity=0.203 Sum_probs=170.2
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|+|||+++++.+.+ .+.....+|..|||.|+. |++..+
T Consensus 35 GTLDP~AtGvL~i-------~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D~~-----G~v~~~-------------- 88 (304)
T PRK01550 35 GTLDPEVSGVLPI-------CVGRATKIAEYLTDEGKTYEGEVTLGFSTTTEDAD-----GEVVET-------------- 88 (304)
T ss_pred CCCCCcCeeEEEE-------EEChhhhhhHHhcCCCcEEEEEEEECCcccCCCCC-----CCEEee--------------
Confidence 4699999999999 9999999999999754 677777899999999995 887642
Q ss_pred eCCC-CCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeee--
Q psy4559 150 FKPP-DFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHF-- 226 (336)
Q Consensus 150 ~~~~-~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~-- 226 (336)
...+ +++.+++++++..|.|++.|+|| | |||+|+||+|||||||+|++||+++|+|+||+|+++++
T Consensus 89 ~~~~~~~~~~~i~~~l~~f~G~i~Q~PP---------~--ySAvKv~Gkr~YelAR~G~~ve~~~r~v~I~~i~ll~~~~ 157 (304)
T PRK01550 89 KPVDRPITREEIEAALASLTGTIEQIPP---------M--YSAVKVNGKKLYEYARAGIEVERPVRQITIHEFVLLDSRE 157 (304)
T ss_pred ccCCCCCCHHHHHHHHHhccceEEEeCC---------h--hHeEecCCHhHHHHHHCCCccccCCcceEEEEEEEEeecc
Confidence 1122 38999999999999999999999 8 99999999999999999999999999999999999974
Q ss_pred ----cCCeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChh----HHHHHhhhhhh
Q psy4559 227 ----KPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQ----HVIENIAHNET 298 (336)
Q Consensus 227 ----~~p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~----~I~~~i~~~~~ 298 (336)
+.|.++|+|+|||| |||||||||||.+|||+|||++||||++|+|++++|++++++... .+.+.+.+++.
T Consensus 158 ~~~~~~~~~~~~v~cskG--TYIRsL~~Dig~~Lg~~a~~~~L~Rt~~G~f~~~~a~~le~l~~~~~~~~l~~~l~p~~~ 235 (304)
T PRK01550 158 DFEGETQSFRFRVTCSKG--TYVRTLAVMIGEKLGYPAHMSHLVRTASGGFTLEDCLTFEEIEENVQAGTVESILYPIDR 235 (304)
T ss_pred ccccCCceEEEEEEECCC--CCHHHHHHHHHHHHCCCEEEEEEEeEEECCCCHHHcCCHHHHHhhhhccchhhhcCCHHH
Confidence 34899999999999 999999999999999999999999999999999999988776421 13345666666
Q ss_pred hhcccC
Q psy4559 299 LVDKMD 304 (336)
Q Consensus 299 lL~~~p 304 (336)
+|.++|
T Consensus 236 ~l~~lp 241 (304)
T PRK01550 236 ALSHLP 241 (304)
T ss_pred HHhhCC
Confidence 666655
No 9
>PRK05033 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.8e-50 Score=387.26 Aligned_cols=194 Identities=19% Similarity=0.318 Sum_probs=172.8
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|++||+++++.+.+ .+.....+|+.|||.|+. |++..
T Consensus 43 GTLDP~AtGvL~v-------~vG~aTkl~~~~~~~~K~Y~a~~~lG~~TdT~D~~-----G~v~~--------------- 95 (312)
T PRK05033 43 GALDPLATGMLPI-------CLGEATKFSQYLLDSDKRYRVTARLGQRTDTSDAD-----GEVVE--------------- 95 (312)
T ss_pred CcCCCcCeeEEEE-------EECHHhhhhHHhcCCCcEEEEEEEECCcccCCCCC-----CCEEE---------------
Confidence 4699999999999 9999999999999854 677777799999999995 88764
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecCC
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~p 229 (336)
..+.++|.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||+|++++|+.|
T Consensus 96 ~~~~~~t~~~l~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~ 164 (312)
T PRK05033 96 ERPVTLSAEQLEAALEKFRGDIEQVPS---------M--YSALKYQGQPLYEYARQGIEVEREARPITIYELELIRFEGD 164 (312)
T ss_pred eecCCCCHHHHHHHHHHCcCcEEEeCC---------h--hHeEeeCCeEHHHHHhCCcccccCceeEEEEEEEEeeEeCC
Confidence 233358999999999999999999999 8 99999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChh-------------HHHHHhhhh
Q psy4559 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQ-------------HVIENIAHN 296 (336)
Q Consensus 230 ~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~-------------~I~~~i~~~ 296 (336)
.++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|++++++... .+.+.+.++
T Consensus 165 ~~~~~v~cs~G--TYIRsL~~Dig~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~~~~~~~~~~l~~~llp~ 242 (312)
T PRK05033 165 ELELEVHCSKG--TYIRTLVDDLGEKLGCGAHVIYLRRTQVAPYPLERMVTLEQLEALVEQAEQQEIPPAELLDPLLLPM 242 (312)
T ss_pred EEEEEEEECCC--CCHHHHHHHHHHHHCCCEEEEEEEeEEECCcccccccCHHHHHHhhhhhccccccchhhHhhhhCCH
Confidence 99999999999 999999999999999999999999999999999999988887421 133346666
Q ss_pred hhhhcccC
Q psy4559 297 ETLVDKMD 304 (336)
Q Consensus 297 ~~lL~~~p 304 (336)
+.+|.++|
T Consensus 243 ~~~l~~lp 250 (312)
T PRK05033 243 DSAVSDLP 250 (312)
T ss_pred HHHHhhCC
Confidence 66666655
No 10
>PRK14123 tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.7e-50 Score=386.44 Aligned_cols=197 Identities=18% Similarity=0.223 Sum_probs=169.8
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcC-CchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNN-NCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~-~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|+|||+++++.+. +.+.....+|..|||.|+. |++..+.+
T Consensus 36 GTLDP~AtGvL~v-------~vG~aTkl~~~l~~~~K~Y~~~~~lG~~TdT~D~~-----G~vi~~~~------------ 91 (305)
T PRK14123 36 GTLDPEVAGVLPV-------CIGNATRVSDYVMDMGKAYEATVSIGRSTTTEDQT-----GDTLETKG------------ 91 (305)
T ss_pred cCCCCcCeeEEEE-------EEChhhhhHHHhcCCCcEEEEEEEECCcccCCCCC-----CCEEEecc------------
Confidence 4699999999999 999999999999875 4677777799999999996 88764211
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEee---e
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVH---F 226 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~---~ 226 (336)
....+++.++++++|..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||+|++++ |
T Consensus 92 ~~~~~~~~~~l~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~~~~~~~~ 160 (305)
T PRK14123 92 VHSADFNKDDIDRLLEQFKGIIEQIPP---------M--YSSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDF 160 (305)
T ss_pred CCcCCCCHHHHHHHHHhccCceeecCC---------h--hheEeeCCHhHHHHHhCCCcccCCceEEEEEEEEEeecccc
Confidence 111248999999999999999999999 8 9999999999999999999999999999999999884 6
Q ss_pred cC--CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChh----HHHHHhhhhhhhh
Q psy4559 227 KP--PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQ----HVIENIAHNETLV 300 (336)
Q Consensus 227 ~~--p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~----~I~~~i~~~~~lL 300 (336)
+. |.|+|+|+|||| |||||||||||.+|||+|||++||||++|+|++++|++++++... .+.+.+.+++.+|
T Consensus 161 ~~~~~~~~~~v~cskG--TYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~l~~a~~l~~l~~~~~~~~l~~~l~p~~~~l 238 (305)
T PRK14123 161 KENECHFKIRVICGKG--TYIRTLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGL 238 (305)
T ss_pred cCCCceEEEEEEeCCC--cCHHHHHHHHHHHHCCCEEEEEEEeEEECCCchHHcCCHHHHHhhhcccchhhccCCHHHHH
Confidence 44 899999999999 999999999999999999999999999999999999988877421 1334455666666
Q ss_pred cccC
Q psy4559 301 DKMD 304 (336)
Q Consensus 301 ~~~p 304 (336)
.++|
T Consensus 239 ~~lp 242 (305)
T PRK14123 239 KGLP 242 (305)
T ss_pred hhCC
Confidence 5544
No 11
>TIGR00431 TruB tRNA pseudouridine 55 synthase. TruB, the tRNA pseudouridine 55 synthase, converts uracil to pseudouridine in the T loop (not the anticodon loop - beware mis-annotation in Swiss-Prot) of most tRNAs of all three domains of life. This model is built on a seed alignment of bacterial proteins only. Saccharomyces cerevisiae protein YNL292w (Pus4) has been shown to be the pseudouridine 55 synthase of both cytosolic and mitochondrial compartments, active at no other position on tRNA and the only enzyme active at that position in the species. A distinct yeast protein YLR175w, (centromere/microtubule-binding protein CBF5) is an rRNA pseudouridine synthase, and the archaeal set is much more similar to CBF5 than to Pus4. It is unclear whether the archaeal proteins found by this model are tRNA pseudouridine 55 synthases like TruB, rRNA pseudouridine synthases like CBF5, or (as suggested by the absence of paralogs in the Archaea) both. CBF5 likely has additional, eukaryotic-specific
Probab=100.00 E-value=1.1e-49 Score=365.65 Aligned_cols=175 Identities=23% Similarity=0.393 Sum_probs=161.7
Q ss_pred eeecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceee
Q psy4559 70 VSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148 (336)
Q Consensus 70 ~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI 148 (336)
.--|||+|+||||+ ++|++||+++++.+.+ .+.....+|..|||.|.. |++..+
T Consensus 34 ~GTLDP~AsGvLiv-------~vG~~Tkl~~~~~~~~K~Y~~~~~~G~~TdT~D~~-----G~i~~~------------- 88 (209)
T TIGR00431 34 TGTLDPFATGVLPI-------LVGKATKLSPYLTDLDKEYRAEIRLGVRTDTLDPD-----GQIVET------------- 88 (209)
T ss_pred CCCCCCcCceEEEE-------EEChHhhhhHHHcCCCCeEEEEEEECCcCCCCCCC-----CCEEEe-------------
Confidence 45699999999999 9999999999999744 677777899999999995 887642
Q ss_pred eeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC
Q psy4559 149 HFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP 228 (336)
Q Consensus 149 ~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~ 228 (336)
.+..++.+++++++..|+|+++|+|| | |||+|+||+|||||||+|+++|+++|+++||++++++|+.
T Consensus 89 --~~~~~~~~~l~~~l~~f~G~~~Q~PP---------~--ySA~Kv~G~raYelAR~g~~v~~~~r~v~I~~i~ll~~~~ 155 (209)
T TIGR00431 89 --RPVNPTTEDVEAALPTFRGEIEQIPP---------M--YSALKVNGKRLYEYARQGIEVERKARPVTVYDLQFLKYEG 155 (209)
T ss_pred --cCCCCCHHHHHHHHHHccCcEEEECC---------h--hhEEeeCCHhHHHHHHCCCccccCcceeEEEEEEEEEEcC
Confidence 33346889999999999999999999 8 9999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccC
Q psy4559 229 PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHW 284 (336)
Q Consensus 229 p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~ 284 (336)
|.|+|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|++++++
T Consensus 156 ~~~~~~v~cs~G--TYIRsL~~Dig~~L~~~a~l~~L~Rt~~G~f~~~~a~~l~~l 209 (209)
T TIGR00431 156 PELTLEVHCSKG--TYIRTLARDLGEKLGCGAYVSHLRRTAVGDFPLDQSVTLEEL 209 (209)
T ss_pred CcEEEEEEECCC--CCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCChhhC
Confidence 999999999999 999999999999999999999999999999999999987764
No 12
>PRK02484 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=6.8e-50 Score=382.96 Aligned_cols=195 Identities=17% Similarity=0.231 Sum_probs=167.6
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|+|||+++++.+.+ .+.....+|..|||.|+. |++..+
T Consensus 36 GTLDP~AtGvL~i-------~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D~~-----G~vi~~-------------- 89 (294)
T PRK02484 36 GTLDPDVVGVLPI-------AVGKATRLIEYMTEAGKVYEGEITLGYSTTTEDAS-----GEVVAE-------------- 89 (294)
T ss_pred CCCCCCCeeEEEE-------EEChhhhhhHHhccCCcEEEEEEEECCcccCCCCC-----CCEEEe--------------
Confidence 4699999999999 9999999999999854 677777799999999995 887642
Q ss_pred eCCC-CCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEee---
Q psy4559 150 FKPP-DFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVH--- 225 (336)
Q Consensus 150 ~~~~-~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~--- 225 (336)
...+ .++.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++|++++|+|+||++++++
T Consensus 90 ~~~~~~~~~~~l~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~ 158 (294)
T PRK02484 90 TPLTQPLTEEEVDQAMTSFTGKITQIPP---------M--YSAVKVNGKKLYEYARAGEEVERPKRQVTIYQFERTSPLS 158 (294)
T ss_pred ccCCCCCCHHHHHHHHHhccCeEEEeCC---------h--hHeEeeCCHhHHHHHHCCCccccCceEEEEEEEEEecccc
Confidence 1222 28999999999999999999999 8 9999999999999999999999999999999999974
Q ss_pred e---cCCeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChhHH---HHHhhhhhhh
Q psy4559 226 F---KPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHV---IENIAHNETL 299 (336)
Q Consensus 226 ~---~~p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~~I---~~~i~~~~~l 299 (336)
| +.|.++|+|+|||| |||||||||||.+|||+|||++||||++|+|++++|+++++++.... .+.+.+.+.+
T Consensus 159 ~~~~~~~~~~~~v~cskG--TYIRsL~~DiG~~Lg~~a~~~~L~Rt~~G~f~l~~a~~l~~l~~~~~~~~l~~l~p~~~~ 236 (294)
T PRK02484 159 FDEDGLCRFSFRVACSKG--TYVRTLAVDLGEKLGYAAHMSFLTRTASAGLTLEQAVTLEEIAEKVEAGELSFLQPIEYG 236 (294)
T ss_pred ccccCCceEEEEEEeCCC--CCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHHHHhhhhccchheecCHHHH
Confidence 6 24899999999999 99999999999999999999999999999999999998777643210 1235555555
Q ss_pred hcccC
Q psy4559 300 VDKMD 304 (336)
Q Consensus 300 L~~~p 304 (336)
|.++|
T Consensus 237 l~~lp 241 (294)
T PRK02484 237 VADLP 241 (294)
T ss_pred HccCC
Confidence 55444
No 13
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.
Probab=100.00 E-value=6.9e-50 Score=380.18 Aligned_cols=196 Identities=19% Similarity=0.340 Sum_probs=172.3
Q ss_pred eeecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceee
Q psy4559 70 VSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148 (336)
Q Consensus 70 ~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI 148 (336)
.--|||+|+||||+ |+|++||+++++.+.+ .+.....+|..|||.|+. |++..+
T Consensus 32 ~GTLDP~AtGvL~v-------~vG~aTkl~~~l~~~~K~Y~~~~~~G~~TdT~D~~-----G~v~~~------------- 86 (277)
T cd02573 32 TGTLDPLATGVLPI-------ALGEATKLSQYLLDADKTYRATVRLGEATDTDDAE-----GEIIET------------- 86 (277)
T ss_pred CCCCCCcCeEEEEE-------EEChHHhhHHHhcCCCcEEEEEEEECCcccCCCCC-----CCEEEe-------------
Confidence 35699999999999 9999999999999754 677777899999999995 887642
Q ss_pred eeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC
Q psy4559 149 HFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP 228 (336)
Q Consensus 149 ~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~ 228 (336)
...+.++.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||+|++++|+.
T Consensus 87 -~~~~~~~~~~i~~~l~~f~G~i~Q~PP---------~--ySAvkv~G~raYelAR~G~~ve~~~r~v~I~~i~ll~~~~ 154 (277)
T cd02573 87 -SPPPRLTEEEIEAALKAFTGEIEQVPP---------M--YSAVKVNGKRLYELARAGEEVERPPRKVTIYSLELLSFDP 154 (277)
T ss_pred -cCCCCCCHHHHHHHHHHccCcEEeeCC---------h--hHeEeeCCccHHHHHhCCCccccCCeeEEEEEEEEEEecC
Confidence 123468999999999999999999999 8 9999999999999999999999999999999999999987
Q ss_pred --CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChhH---HHHHhhhhhhhhccc
Q psy4559 229 --PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQH---VIENIAHNETLVDKM 303 (336)
Q Consensus 229 --p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~~---I~~~i~~~~~lL~~~ 303 (336)
|.++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|+++++++... +.+.+.+.+.+|.++
T Consensus 155 ~~~~~~~~v~cs~G--TYIRsL~~Dig~~Lg~~a~~~~L~Rt~~G~f~~~~a~~l~~l~~~~~~~l~~~l~p~~~~l~~~ 232 (277)
T cd02573 155 ENPEADFEVECSKG--TYIRSLARDLGKALGCGAHLSALRRTRSGPFTLEDAITLEELEALPEEGLDELLLPIDAALSHL 232 (277)
T ss_pred CCCeEEEEEEECCC--CcHHHHHHHHHHHHCCCeEEEEEEEEEECCccHHHccCHHHHHhhhhcccccccCCHHHHHhhC
Confidence 999999999999 9999999999999999999999999999999999999887775321 223455666666554
Q ss_pred C
Q psy4559 304 D 304 (336)
Q Consensus 304 p 304 (336)
|
T Consensus 233 p 233 (277)
T cd02573 233 P 233 (277)
T ss_pred C
Confidence 4
No 14
>PRK03287 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.9e-49 Score=380.49 Aligned_cols=202 Identities=14% Similarity=0.228 Sum_probs=172.0
Q ss_pred eeecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceee
Q psy4559 70 VSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148 (336)
Q Consensus 70 ~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI 148 (336)
.--|||+|+||||+ |+|++||+++++.+.+ .+.....+|..|||.|.. |++..+
T Consensus 41 ~GTLDP~AtGvL~i-------~vG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D~~-----G~v~~~------------- 95 (298)
T PRK03287 41 AGTLDPMATGVLVL-------GVERATKLLGHLTLTDKSYTATIRLGQATTTDDAE-----GEVLAS------------- 95 (298)
T ss_pred CccCCCcceeEEEE-------EeChhhhhhHHHhcCCcEEEEEEEeCccccCCCCC-----CCEEee-------------
Confidence 45699999999999 9999999999999854 677777799999999995 886642
Q ss_pred eeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC
Q psy4559 149 HFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP 228 (336)
Q Consensus 149 ~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~ 228 (336)
...+++|.+++++++.+|+|++.|+|| | |||+|+||||||||||+|++||+++|+|+||++++++|+.
T Consensus 96 -~~~~~it~~~i~~~l~~f~G~i~Q~PP---------~--ySAvKv~Gkr~YelAR~G~~ve~~~R~v~I~~~~l~~~~~ 163 (298)
T PRK03287 96 -ADASAVTDEAIAAAVAALTGEIMQVPS---------A--VSAIKVDGKRAYARVRAGEEVELPARPVTVSRFEVLAVRR 163 (298)
T ss_pred -cCCCCCCHHHHHHHHHhCcCeEEEeCC---------h--hHeEEECCHHHHHHHhCCCccccCcEEEEeeeeEEEEEec
Confidence 122358999999999999999999999 8 9999999999999999999999999999999999999954
Q ss_pred ----CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChhHHHHHhhhhhh-hhccc
Q psy4559 229 ----PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNET-LVDKM 303 (336)
Q Consensus 229 ----p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~~I~~~i~~~~~-lL~~~ 303 (336)
+.++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|+++++++... ..+.+.+. ++.+
T Consensus 164 ~~~~~~~~~~v~cskG--TYIRSL~~Dig~~Lg~~a~~~~LrRt~~G~f~l~~a~~l~~l~~~~--~~l~p~~~~~l~~- 238 (298)
T PRK03287 164 DGDFIDLDVEVDCSSG--TYIRALARDLGAALGVGGHLTALRRTRVGPFTLDQARTLDELAEEP--ALSLSLDEAAARS- 238 (298)
T ss_pred CCCccEEEEEEEECCC--cCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHccCHHHHHhhh--hhcCCHHHHHHcc-
Confidence 378999999999 9999999999999999999999999999999999999877664321 23445544 3444
Q ss_pred CCcCCCCceeeeCCCC
Q psy4559 304 DPMRPQLQSVNMTDSD 319 (336)
Q Consensus 304 p~~~~~l~~v~~~~~~ 319 (336)
+|.+.+.+++
T Consensus 239 ------lp~v~l~~~~ 248 (298)
T PRK03287 239 ------FPRRDLTAAE 248 (298)
T ss_pred ------CCeEEeCHHH
Confidence 5555555543
No 15
>PRK00020 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.9e-49 Score=371.25 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=162.5
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|++||+++++.+.+ .+.....+|..|||.|+. |++..+.+
T Consensus 43 GTLDP~AtGvLiv-------~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D~~-----G~v~~~~~------------ 98 (244)
T PRK00020 43 GTLDPFATGLLVC-------CMGRATKISGRMLEADKTYQATLQFGEETDSGDLT-----GHIVARAP------------ 98 (244)
T ss_pred CcCCCcCeeEEEE-------EECHHhhhhHHhccCCcEEEEEEEeCCcccCCCCC-----CcEEEecc------------
Confidence 4699999999999 9999999999999865 677778899999999995 88764211
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecCC
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~p 229 (336)
...+++|.+++++++..|.|++.|+|| | |||+|+||+|||||||+|++||+++|+|+||+|++++|+.|
T Consensus 99 ~~~~~it~e~l~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~ 167 (244)
T PRK00020 99 DGFAGVEEAALRDVLSRFVGTIEQIPP---------M--YSALKRDGKPLYEYARAGIELDRPPRQVTIRHIELLSFSGM 167 (244)
T ss_pred CccCCCCHHHHHHHHHhccCeEEEeCC---------h--hheEEECCeEHHHHHhCCcccccCCeeEEEEEEEEEEEeCC
Confidence 012358999999999999999999999 8 99999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCC
Q psy4559 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWR 285 (336)
Q Consensus 230 ~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~ 285 (336)
.++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|++++++.
T Consensus 168 ~~~~~v~cSkG--TYIRSL~~DiG~~Lg~~a~l~~LrRt~~G~f~l~~a~~l~~l~ 221 (244)
T PRK00020 168 QAQIDVACSKG--TYIRTLAQDIGRALGCHAHLAALRRTHVGPFSLDRAVTLEALQ 221 (244)
T ss_pred EEEEEEEECCC--cCHHHHHHHHHHHHCCCEEEEEEEeeEECCCChHHcCCHHHHH
Confidence 99999999999 9999999999999999999999999999999999998766653
No 16
>PRK14846 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=4.2e-49 Score=382.82 Aligned_cols=202 Identities=19% Similarity=0.300 Sum_probs=174.3
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|++||+++++.+.+ .+.....+|+.|||.|+. |++..+
T Consensus 36 GTLDP~AtGVL~i-------~vG~aTKl~~~l~~~~K~Y~a~~~lG~~TDT~D~e-----G~ii~~-------------- 89 (345)
T PRK14846 36 GTLDVEAEGILPF-------AVGEATKLIHLLIDARKTYIFTVKFGMQTNSGDCA-----GKVIAT-------------- 89 (345)
T ss_pred ccCCCcCceEEEE-------EEChhhhhhHHHhcCCceEEEEEEECCccCCCCCC-----CCEEEe--------------
Confidence 4699999999999 9999999999999854 677777799999999995 887642
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC-
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP- 228 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~- 228 (336)
.+..++.++++++|..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||+|++++|+.
T Consensus 90 -~~~~~~~e~l~~~L~~f~G~i~Q~PP---------~--ySAvKv~GkraYelARkG~~Vel~~R~V~I~~i~ll~f~~~ 157 (345)
T PRK14846 90 -KDCIPSQEEAYAVCSKFIGNVTQIPP---------A--FSALKVNGVRAYKLAREGKKVELKPRNITIYDLKCLNFDEK 157 (345)
T ss_pred -cCCCCCHHHHHHHHHhCcceEEeeCC---------h--hheEeECChhHHHHHhCCCccccCceeEEEEEEEEEEEcCC
Confidence 22346889999999999999999999 8 9999999999999999999999999999999999999975
Q ss_pred -CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChh---HHHHHhhhhhhhhcccC
Q psy4559 229 -PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQ---HVIENIAHNETLVDKMD 304 (336)
Q Consensus 229 -p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~---~I~~~i~~~~~lL~~~p 304 (336)
|.++|+|.||+| |||||||||||.+|||+|||++||||++|+|++++|++++++... ++.+.+.+++.+|.+
T Consensus 158 ~~~~~~~v~CSkG--TYIRSLa~DIG~~Lg~~A~l~~LrRtr~G~F~l~~ai~le~L~~~~~~~l~~~llpie~~l~~-- 233 (345)
T PRK14846 158 NATATYYTECSKG--TYIRTLAEDLALSLQSLGFVIELRRTQVGIFKEENAIRIKSPDEITKNALEEKSIKIEAILDD-- 233 (345)
T ss_pred CcEEEEEEEECCC--CcHHHHHHHHHHHHCCCEEEeEEEeEEECCCcHHHcCCHHHHHhhhhcchhhccCCHHHHHhh--
Confidence 679999999999 999999999999999999999999999999999999988776421 123345555555544
Q ss_pred CcCCCCceeeeCCCC
Q psy4559 305 PMRPQLQSVNMTDSD 319 (336)
Q Consensus 305 ~~~~~l~~v~~~~~~ 319 (336)
||.|.+.++.
T Consensus 234 -----lp~v~l~~~~ 243 (345)
T PRK14846 234 -----ILVLDATDSQ 243 (345)
T ss_pred -----CCeEEeCHHH
Confidence 6666666543
No 17
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=100.00 E-value=1e-48 Score=359.53 Aligned_cols=175 Identities=25% Similarity=0.369 Sum_probs=161.6
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ ++|++||+++++...+ .+.....+|..|||.|.. |++..+
T Consensus 33 GTLDP~AsGvLiv-------~vG~aTkl~~~~~~~~K~Y~~~~~lG~~TdT~D~~-----G~v~~~-------------- 86 (210)
T cd00506 33 GTLDPFATGVLVV-------GIGKATKLLKHLLAATKDYTAIGRLGQATDTFDAT-----GQVIEE-------------- 86 (210)
T ss_pred CcCCCcCeeEEEE-------EECHHHhhhHHHhcCCceEEEEEEECCcCCCCCCC-----CCEEEE--------------
Confidence 4699999999999 9999999999999855 677777899999999995 886642
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC-
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP- 228 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~- 228 (336)
....++|.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+++||+|++++|+.
T Consensus 87 ~~~~~it~e~l~~~l~~f~G~i~Q~pP---------~--ySAvKv~G~raYelAR~G~~v~~~~r~v~I~~i~ll~~~~~ 155 (210)
T cd00506 87 TPYDHITHEQLERALETLTGDIQQVPP---------L--YSAVKRQGQRAYELARRGLLVPDEARPPTIYELLCIRFNPP 155 (210)
T ss_pred eCCCCCCHHHHHHHHHHCCCeEEEeCC---------c--hheEEECCHhHHHHHHCCCccccCcEeEEEEEEEEEEEcCC
Confidence 233468999999999999999999999 8 9999999999999999999999999999999999999976
Q ss_pred -CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccC
Q psy4559 229 -PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHW 284 (336)
Q Consensus 229 -p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~ 284 (336)
|.+.|++.||+| |||||||||||.+|||+|||++||||++|+|++++|+++++|
T Consensus 156 ~~~~~~~v~cs~G--TYIRsL~~Dig~~Lg~~a~l~~L~R~~~G~f~~~~a~~l~~l 210 (210)
T cd00506 156 HFLLEVEVVCETG--TYIRTLIHDLGLELGVGAHVTELRRTRVGPFKVENAVTLHHL 210 (210)
T ss_pred CcEEEEEEEECCC--cCHHHHHHHHHHHhCCcEEEEEEEEEEECCCchhhccchhhC
Confidence 589999999999 999999999999999999999999999999999999988765
No 18
>PRK00989 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=5.8e-49 Score=365.35 Aligned_cols=178 Identities=16% Similarity=0.212 Sum_probs=163.9
Q ss_pred eecCCCCccccccccccccCCcch-HHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKP-LQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gk-atrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI 148 (336)
--|||+|+||||+ ++|+ +||+++++.+.+ .+.....+|..|||.|.. |++..
T Consensus 42 GTLDP~AtGvLiv-------~vG~~aTkl~~~~~~~~K~Y~~~~~~G~~TdT~D~~-----G~vi~-------------- 95 (230)
T PRK00989 42 GTLDPFATGVMVM-------LIGRKFTRLSDILLFEDKEYAAVAHLGTTTDSYDCD-----GKIVG-------------- 95 (230)
T ss_pred ccCCCCCeeEEEE-------EECCchhhhHHHhcCCCcEEEEEEEECCcccCCCCC-----CcEEE--------------
Confidence 4699999999999 8998 799999998754 677777899999999995 88664
Q ss_pred eeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC
Q psy4559 149 HFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP 228 (336)
Q Consensus 149 ~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~ 228 (336)
..+..++.++++++|..|+|.+.|+|| | |||+|+||+|||||||+|++||+++|+|+|+ +++++|+.
T Consensus 96 -~~~~~~~~~~i~~~l~~f~G~~~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~r~v~i~-~~ll~~~~ 162 (230)
T PRK00989 96 -RSKKIPTLEEVLSAASYFQGEIQQVPP---------M--FSAKKVQGKKLYEYARQGLSIERRPSTVQVH-LQLTKYEY 162 (230)
T ss_pred -ecCCCCCHHHHHHHHHhCcceEEeeCC---------h--hHeEEECCHhHHHHHhCCCccccCcEEEEEE-EEEEEeeC
Confidence 233457999999999999999999999 8 9999999999999999999999999999999 99999999
Q ss_pred CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChhHH
Q psy4559 229 PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHV 289 (336)
Q Consensus 229 p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~~I 289 (336)
|.++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|+++++|+.++.
T Consensus 163 p~~~~~v~cs~G--TYIRSL~~DiG~~Lg~~a~~~~LrRt~~G~f~l~~a~~l~~l~~~~~ 221 (230)
T PRK00989 163 PLLHFVVQCSKG--TYIRSIAHELGNMLGCGAYLEELRRLRSGSFSIDQCIDGNLLDEPDF 221 (230)
T ss_pred CeEEEEEEEcCC--CcHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHHHhcchh
Confidence 999999999999 99999999999999999999999999999999999999988876543
No 19
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=100.00 E-value=3.2e-48 Score=359.50 Aligned_cols=191 Identities=30% Similarity=0.485 Sum_probs=173.4
Q ss_pred eeEEeeecCCCCccccccccccccCCcchHHHHHhhhhcC---CchhhhhhhccccCchhhhhhhhCCceeeCCCCCcee
Q psy4559 66 ITVLVSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNN---NCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVV 142 (336)
Q Consensus 66 ~~~~~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~---~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I 142 (336)
+-..|--|||+++||+++ +.+++||++++|.+. +.+.....+|..|||.|+. |++...
T Consensus 33 ~~~~vhrLD~~aSGvl~~-------a~~~~tkl~~~~~~~~~~K~Y~~~~~lg~~TdT~D~~-----G~v~~~------- 93 (226)
T cd02868 33 VLVGVHRLDAFSSGVLVL-------GVNHGNKLLSHLYSNHPTRVYTIRGLLGKATENFFHT-----GRVIEK------- 93 (226)
T ss_pred eeeEccccCCCCceEEEE-------EeChhHhHHHHHHhcCCCeEEEEEEEEccccCCCCCC-----CCEEEe-------
Confidence 444568999999999999 899999999999974 4677777799999999995 886642
Q ss_pred ecceeeeeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEE
Q psy4559 143 YGLKCVHFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLK 222 (336)
Q Consensus 143 ~gielI~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ 222 (336)
...++++.++|++++..|+|.+.|.|| + |||+|+||+|||||||+|++||+++|+|+||+|+
T Consensus 94 -------~~~~~it~~~i~~~l~~f~g~~~q~~p---------~--~sa~kv~GkraYelAR~G~~ve~~~r~v~I~~i~ 155 (226)
T cd02868 94 -------TTYDHITREKIERLLAVIQSGHQQKAF---------E--LCSVDDQSQQAAELAARGLIRPADKSPPIIYGIR 155 (226)
T ss_pred -------cCCCCCCHHHHHHHHHHhhCCceEECC---------c--eEEEeeCCHHHHHHHHCCCccCCCCcceEEEEEE
Confidence 233468999999999999988888888 6 8999999999999999999999999999999999
Q ss_pred EeeecCCeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChhHHHHHh
Q psy4559 223 CVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293 (336)
Q Consensus 223 ll~~~~p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~~I~~~i 293 (336)
+++|+.|.|+|+|+||+||+|||||||+|||.+|||+|||++||||++|+|++++|+++++|++++|.+||
T Consensus 156 l~~~~~p~~~~~v~cskGT~~YIRsL~~Dig~~Lg~~a~~~~L~R~~~G~f~~~~a~~~~~~~~~~i~~~~ 226 (226)
T cd02868 156 LLEFRPPEFTLEVQCINETQEYLRKLIHEIGLELRSSAVCTQVRRTRDGPFTVDDALLRKQWNLQNIISNI 226 (226)
T ss_pred EEEecCCeEEEEEEEECCCHHHHHHHHHHHHHHhCCcEEEEEEEeeEECCCCHHHcccHHHcChhhHHhhC
Confidence 99999999999999999944499999999999999999999999999999999999999999999999875
No 20
>PRK14122 tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=9.1e-49 Score=377.62 Aligned_cols=176 Identities=17% Similarity=0.248 Sum_probs=161.1
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|++||+++++.+.+ .+.....+|+.|||.|+. |++...
T Consensus 34 GTLDP~AtGvL~i-------~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D~e-----G~i~~~-------------- 87 (312)
T PRK14122 34 GTLDPLATGVLVL-------CTDDSTKLVPFLSAEDKEYLAWVSFGATTPTLDAE-----GPISEE-------------- 87 (312)
T ss_pred CCCCCcCeeeEEE-------EEChhhhhhHHhcCCCceEEEEEEECCcCCCCCCC-----CCEEEe--------------
Confidence 4599999999999 9999999999998754 677777899999999995 887642
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC-
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP- 228 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~- 228 (336)
...++++.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||++++++|+.
T Consensus 88 ~~~~~~~~~~l~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~vel~~R~v~I~~i~ll~~~~~ 156 (312)
T PRK14122 88 APVSPLDEKDLEAALPGFLGLTEQVPP---------Q--YSAIKVGGVRAYEAARAGGALELPARPVVYHELELLAFEPS 156 (312)
T ss_pred cCCCCCCHHHHHHHHHhCcCeEEEeCC---------h--HHeEEECCeEHHHHHhCCCccccCCeeEEEEEEEEEEeccc
Confidence 223358999999999999999999999 8 9999999999999999999999999999999999999864
Q ss_pred ---------------------------------CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccC
Q psy4559 229 ---------------------------------PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGL 275 (336)
Q Consensus 229 ---------------------------------p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~l 275 (336)
|.+.|+|+||+| |||||||||||.+|||+|||++||||++|+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~cSkG--TYIRSLa~DiG~~Lg~~a~m~~LrRt~~G~f~l 234 (312)
T PRK14122 157 VAPIPRPIAPSAEGWTPDPRGRPVTLPEPLGEYPTALLRLVVGSG--TYVRSFARDLGAALGVPAHLSGLVRTRVGRYGL 234 (312)
T ss_pred ccccccccccccccccccccccccccccccccCceEEEEEEeCCC--cCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcH
Confidence 679999999999 999999999999999999999999999999999
Q ss_pred ccccccccCC
Q psy4559 276 EHSLLRKHWR 285 (336)
Q Consensus 276 e~Al~le~~~ 285 (336)
++|+++++++
T Consensus 235 ~~a~~l~~l~ 244 (312)
T PRK14122 235 EDAVSLEDLA 244 (312)
T ss_pred HHcCCHHHHh
Confidence 9999877764
No 21
>PRK04099 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=2.6e-47 Score=361.91 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=158.8
Q ss_pred eeecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceee
Q psy4559 70 VSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148 (336)
Q Consensus 70 ~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI 148 (336)
.--|||+|+||||+ |+|++||+++++++.. .+..+..+|..|||.|.. |. ..
T Consensus 34 ~GTLDP~AtGvLiv-------~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D~e-----~i-~~-------------- 86 (273)
T PRK04099 34 SGTLDPFAKGVLIV-------AFGQYTKLFRFLKKTPKTYRATLWLGASSPSLDIE-----NI-ES-------------- 86 (273)
T ss_pred CccCCCCCeeEEEE-------EEChHhhhHHHhccCCceEEEEEEECCcccCCCCc-----ce-EE--------------
Confidence 35699999999999 9999999999999865 677777799999999984 53 22
Q ss_pred eeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC
Q psy4559 149 HFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP 228 (336)
Q Consensus 149 ~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~ 228 (336)
....++++.+++++++..|+|++.|+|| | |||+|+||||||||||+|++||+++|+++||++++++|+.
T Consensus 87 ~~~~~~~~~~~i~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~~~ll~~~~ 155 (273)
T PRK04099 87 IQIIKPFDKDLIEKILKSLQGEISYTPP---------K--FSAKKINGKRAYELARKGEEFELKPITMEIFDCKLLSYNH 155 (273)
T ss_pred eccCCCCCHHHHHHHHHhCcceEEEeCC---------h--hhEEeeCCHhHHHHHhCCcccccCceeEEEEEEEEEEEeC
Confidence 1123458999999999999999999999 8 9999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccC
Q psy4559 229 PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHW 284 (336)
Q Consensus 229 p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~ 284 (336)
|.++|+|+||+| |||||||||||.+|||+|||++||||++|+|+++++..+.-+
T Consensus 156 p~~~f~v~cs~G--TYIRSL~~Dig~~Lg~~a~m~~LrRt~~G~f~~~~~~~l~pl 209 (273)
T PRK04099 156 PFLTFEITVSEG--AYIRSLGELIAKKLGVNGTLSSLERLSEGKFVYENEKALNPL 209 (273)
T ss_pred CEEEEEEEECCC--CCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHCeecCCh
Confidence 999999999999 999999999999999999999999999999999999765444
No 22
>PRK02193 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=2.9e-47 Score=362.58 Aligned_cols=169 Identities=18% Similarity=0.228 Sum_probs=155.4
Q ss_pred eeecCCCCccccccccccccCCcchHHHHHhhhhcC-CchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceee
Q psy4559 70 VSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNN-NCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148 (336)
Q Consensus 70 ~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~-~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI 148 (336)
.--|||+|+||||+ |+|+|||+++++.+. +.+.....+|..|||.|.. |++..+
T Consensus 32 ~GTLDP~AtGvL~v-------~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D~~-----G~i~~~------------- 86 (279)
T PRK02193 32 TGTLDPLASGLLLV-------ATDEDTKLIDYLDQKDKTYIAKIKFGFISTTYDSE-----GQIINV------------- 86 (279)
T ss_pred CccCCCcCeeEEEE-------EEChhhhhhHHhccCCcEEEEEEEeCCcccCCCCC-----CCEEee-------------
Confidence 34699999999999 999999999999875 4677777799999999995 886642
Q ss_pred eeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC
Q psy4559 149 HFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP 228 (336)
Q Consensus 149 ~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~ 228 (336)
..++.++.+++++++..|+|+++|+|| | |||+|+||+|||||||+|++||+++|+|+||++++++|+.
T Consensus 87 -~~~~~~~~~~l~~~l~~f~G~i~Q~PP---------~--ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~ 154 (279)
T PRK02193 87 -SQNIKVTKENLEEALNNLVGSQKQVPP---------V--FSAKKVNGKRAYDLARQGKQIELKPIEIKISKIELLNFDE 154 (279)
T ss_pred -cCCCCCCHHHHHHHHHhCcCeEEEeCC---------h--HHeEeeCCHhHHHHHhCCceeccCCeeEEEEEEEEEEEcC
Confidence 233468999999999999999999999 8 9999999999999999999999999999999999999986
Q ss_pred C--eeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCcc
Q psy4559 229 P--DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEH 277 (336)
Q Consensus 229 p--~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~ 277 (336)
| .++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++
T Consensus 155 ~~~~~~~~v~cskG--TYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~ 203 (279)
T PRK02193 155 KLQNCVFMWVVSRG--TYIRSLIHDLGKMLKTGAYMSDLERTKIGNLDKNF 203 (279)
T ss_pred CCceEEEEEEECCC--cCHHHHHHHHHHHHCCCEEEEEEEeEEECCcCHHH
Confidence 5 89999999999 99999999999999999999999999999999887
No 23
>cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4. This group consists of Eukaryotic TruB proteins similar to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4, makes psi55 in the T loop of both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=100.00 E-value=5.3e-44 Score=344.59 Aligned_cols=182 Identities=17% Similarity=0.171 Sum_probs=160.8
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcC-CchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNN-NCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~-~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ ++|++||+++++.+. +.|.....+|..|||.|+. |++...
T Consensus 62 GTLDPlAsGVLvv-------gvG~aTK~l~~~l~~~K~Y~~~~~lG~~TdT~D~e-----G~Ii~~-------------- 115 (312)
T cd02867 62 GTLDPLATGVLVV-------GVGAGTKQLQDYLSCSKTYEATGLFGASTTTYDRE-----GKILKK-------------- 115 (312)
T ss_pred cccCCccceeEEE-------EECcHHHHHHHHhcCCceEEEEEEeCCcccCCCCC-----CCEEEe--------------
Confidence 4699999999999 999999999999884 4677788899999999995 887642
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCC--CCcceEEEEEEeeec
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPAL--LKEPVVYGLKCVHFK 227 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~--~R~v~Iy~i~ll~~~ 227 (336)
....++|.++|+++|..|+|++.|+|| | |||+|+||||||||||+|+++|++ +|+|+||+++++.+.
T Consensus 116 ~~~~~it~e~i~~~l~~F~G~i~Q~PP---------~--ySAvKv~GkrlYeyAR~G~~v~~~~~~R~V~I~~~~l~~~~ 184 (312)
T cd02867 116 KPYSHITREDIEEVLAKFRGDIKQVPP---------L--YSALKMDGKRLYEYAREGKPLPRPIERRQVVVSELLVKDWI 184 (312)
T ss_pred cCCCCCCHHHHHHHHHhcceeeeeeCc---------c--hheeeeCCHHHHHHHhCCccccCCCCCceEEEEEEEEEecc
Confidence 223468999999999999999999999 8 999999999999999999999987 899999999999986
Q ss_pred --CCeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCc-cccccccCChhHHHH
Q psy4559 228 --PPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLE-HSLLRKHWRVQHVIE 291 (336)
Q Consensus 228 --~p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le-~Al~le~~~l~~I~~ 291 (336)
.|.++|+|+||+| |||||||||||.+|||+|||+.|+||++|+|+++ ++...+.|.+.+..+
T Consensus 185 ~~~~~~~~~v~cskG--TYIRsL~~Dig~~Lg~~a~~~~L~Rt~~g~f~~~~~~~~~~~~~~~~~~~ 249 (312)
T cd02867 185 EPGPLFTRTVEEEGK--QYERSVVKMLGKELKTFAEVTELTATAEGDPVEEVEATHEESKRKSEVEE 249 (312)
T ss_pred CCCCeEEEEEEeCCc--CCHHHHHHHHHHHhCCCeEEEEEEeeeecCcccccccccCCCcccChhhh
Confidence 4899999999999 9999999999999999999999999999999988 444444455555444
No 24
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-39 Score=308.03 Aligned_cols=173 Identities=16% Similarity=0.252 Sum_probs=144.9
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|+|||+++++.+.. .|..+..+|..||
T Consensus 48 GTLDP~atGvLpi-------~ig~aTKl~~~l~~~~K~Y~a~~~lG~~t~------------------------------ 90 (271)
T COG0130 48 GTLDPLATGVLPI-------CLGEATKLVQYLLDADKEYVATVRLGDQTD------------------------------ 90 (271)
T ss_pred cccCCcccceEEE-------EechhHhHHHHHhhCCcEEEEEEEeCCcCC------------------------------
Confidence 4589999999999 9999999999988643 4444443444444
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecCC
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~p 229 (336)
+.++|.+++..|+|+|.|+|| | |||+| +++++ |+|+|++|.+++++.|
T Consensus 91 ------~~e~i~~~l~~F~G~I~Q~PP---------~--~SAvK-------------~~v~~--R~V~i~~l~~~~~~~~ 138 (271)
T COG0130 91 ------SEEEVRAALEAFTGEIYQIPP---------M--FSAVK-------------REVER--RKITIYDLLELDFDRN 138 (271)
T ss_pred ------CHHHHHHHHHhcceeeEecCC---------c--hhhcc-------------ceEee--EEEEEEEeeeccCCCc
Confidence 789999999999999999999 8 99999 66777 9999999999999999
Q ss_pred eeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChhH---HHHHhhhhhhhhcccCCc
Q psy4559 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQH---VIENIAHNETLVDKMDPM 306 (336)
Q Consensus 230 ~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~~---I~~~i~~~~~lL~~~p~~ 306 (336)
.+.|+|+||+| |||||||+|||.+|||+|||+.||||++|+|++++++++++++... +.+.+.+++ ..
T Consensus 139 ~~~~~v~CskG--TYIRtL~~DlG~~LG~gahm~~LrRt~~g~f~~~~~~~l~~l~~~~~~~~~~~~~p~e-------~~ 209 (271)
T COG0130 139 LVTLRVECSKG--TYIRTLARDLGEALGCGAHMSELRRTRVGPFSEEDAVTLELLDELDAESLLRLLLPLE-------SA 209 (271)
T ss_pred eEEEEEEEecC--cCHHHHHHHHHHHHCCccchhhhccccccccccccccchhhHHHHHhhhhhccccchh-------HH
Confidence 99999999999 9999999999999999999999999999999999999887765432 333333333 45
Q ss_pred CCCCceeeeCCCCCC
Q psy4559 307 RPQLQSVNMTDSDST 321 (336)
Q Consensus 307 ~~~l~~v~~~~~~~~ 321 (336)
...||++.++|++..
T Consensus 210 l~~lpk~~i~~~~~~ 224 (271)
T COG0130 210 LSDLPRLVLKDSAAN 224 (271)
T ss_pred hccCCcEecCHHHHH
Confidence 555888888886653
No 25
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed
Probab=100.00 E-value=3.4e-36 Score=288.72 Aligned_cols=161 Identities=15% Similarity=0.212 Sum_probs=135.5
Q ss_pred eeecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceee
Q psy4559 70 VSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148 (336)
Q Consensus 70 ~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI 148 (336)
.--|||+|+||||| |+|+|||+++++.+.+ .+.....+| .
T Consensus 54 ~GTLDp~A~GvL~v-------~~g~atk~~~~~~~~~K~Y~~~~~~g---------------~----------------- 94 (300)
T PRK04270 54 GGTLDPKVTGVLPV-------ALGKATKVVQALLESGKEYVCVMHLH---------------G----------------- 94 (300)
T ss_pred CCCCCCcCeEEEEE-------EEChHhhhhHHhccCCcEEEEEEEEC---------------C-----------------
Confidence 34699999999999 9999999999998644 444332222 1
Q ss_pred eeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC
Q psy4559 149 HFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP 228 (336)
Q Consensus 149 ~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~ 228 (336)
++|.+++++++..|+|++.|+|| | |||+| +++|+++||+|++++|+.
T Consensus 95 -----~~~~~~~~~~l~~~~g~i~Q~pP---------~--~SA~k-----------------~~~r~v~I~~i~~~~~~~ 141 (300)
T PRK04270 95 -----DVPEEDIRKVFKEFTGEIYQKPP---------L--KSAVK-----------------RRLRVRTIYELEILEIDG 141 (300)
T ss_pred -----CCCHHHHHHHHHHCCCcEEeECC---------H--HHhcc-----------------CCceEEEEEEEEEEEecC
Confidence 26889999999999999999999 8 99999 358999999999999999
Q ss_pred CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChh-----------HHHHHhhhhh
Q psy4559 229 PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQ-----------HVIENIAHNE 297 (336)
Q Consensus 229 p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~-----------~I~~~i~~~~ 297 (336)
|.++|+|+||+| |||||||||||.+|||+|||++||||++|+|++++|++++++... .+.+.+.+.+
T Consensus 142 ~~~~~~v~cs~G--tYIRsl~~dig~~Lg~~a~~~~L~R~~~g~f~~~~a~~l~~l~~~~~~~~~~~d~~~l~~~LlPle 219 (300)
T PRK04270 142 RDVLFRVRCESG--TYIRKLCHDIGLALGTGAHMQELRRTRTGPFTEEDLVTLQDLADAYYFWKEDGDEEELRRVILPME 219 (300)
T ss_pred CEEEEEEEECCc--eEHHHHHHHHHHHHCCCeEEEEEEeEEECCCCcchhcCHHHHHHhhhhhhcccchhhHHhhcCCHH
Confidence 999999999999 999999999999999999999999999999999999988776421 1233455666
Q ss_pred hhhcccC
Q psy4559 298 TLVDKMD 304 (336)
Q Consensus 298 ~lL~~~p 304 (336)
.+|.++|
T Consensus 220 ~aL~~LP 226 (300)
T PRK04270 220 YALSHLP 226 (300)
T ss_pred HHhhhCC
Confidence 6665544
No 26
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative. This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both.
Probab=100.00 E-value=1e-35 Score=288.27 Aligned_cols=160 Identities=15% Similarity=0.215 Sum_probs=136.8
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ |+|+|||+++++.+.+ .+.....+| .
T Consensus 67 GTLDP~A~GvL~v-------~~G~aTkl~~~~~~~~K~Y~~~v~lG---------------~------------------ 106 (322)
T TIGR00425 67 GTLDPKVTGVLPV-------CIERATRLVKSLQEAPKEYVCLMRLH---------------R------------------ 106 (322)
T ss_pred CCCCCCCceEEEE-------EEChHhhccHHhccCCCEEEEEEEEC---------------C------------------
Confidence 4699999999999 9999999999998643 444332233 1
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecCC
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~p 229 (336)
+++.++++++|..|.|++.|+|| | |||+|+ ++|+++||++++++++.|
T Consensus 107 ----~~~~~~l~~~l~~f~g~i~Q~pP---------~--~SA~k~-----------------~~r~v~I~~~~l~~~~~~ 154 (322)
T TIGR00425 107 ----DAKEEDILRVLKEFTGRIFQRPP---------L--KSAVKR-----------------QLRVRTIYESELLEKDGK 154 (322)
T ss_pred ----CCCHHHHHHHHHHcCCcEEeeCC---------h--heEEec-----------------cCeEEEEEEEEEEEecCC
Confidence 25789999999999999999999 8 999993 489999999999999989
Q ss_pred eeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChh-----------HHHHHhhhhhh
Q psy4559 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQ-----------HVIENIAHNET 298 (336)
Q Consensus 230 ~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~-----------~I~~~i~~~~~ 298 (336)
.++|+|+||+| |||||||+|||.+|||+|||++||||++|+|++++|++++++... .+.+.+.+.+.
T Consensus 155 ~~~~~v~cskG--TYIRsL~~Dig~~Lg~~a~~~~L~R~~~g~f~~~~a~~l~~l~~~~~~~~~~~~~~~l~~~l~p~~~ 232 (322)
T TIGR00425 155 DVLFRVSCEAG--TYIRKLCVDIGEALGTGAHMQELRRTRSGCFGEDDMVTLHDLLDAYVFWKEDGDESYLRRVIKPMEY 232 (322)
T ss_pred eEEEEEEeCCC--cChHHHHHHHHHHHCCCEEEEEeEeEEECCccccccccHHHHHHhhhhhhcccchhhHhhhcCCHHH
Confidence 99999999999 999999999999999999999999999999999999998887532 13345667777
Q ss_pred hhcccC
Q psy4559 299 LVDKMD 304 (336)
Q Consensus 299 lL~~~p 304 (336)
+|.++|
T Consensus 233 ~l~~lP 238 (322)
T TIGR00425 233 ALRHLK 238 (322)
T ss_pred HHhhCC
Confidence 776665
No 27
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. This entry represents pseudouridine synthase TruB, as well as Cbf5p that modifies rRNA [].; GO: 0006396 RNA processing; PDB: 1SGV_B 2AUS_C 3UAI_A 3U28_A 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=100.00 E-value=8.7e-36 Score=261.05 Aligned_cols=136 Identities=22% Similarity=0.424 Sum_probs=119.2
Q ss_pred eecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee
Q psy4559 71 SLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH 149 (336)
Q Consensus 71 ~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~ 149 (336)
--|||+|+||||+ ++|++||+++++.+.+ .+.....+|..|||.|.. |++..+
T Consensus 13 GTLDP~AsGvL~v-------~vg~~Tkl~~~l~~~~K~Y~~~~~lG~~TdT~D~~-----G~v~~~-------------- 66 (149)
T PF01509_consen 13 GTLDPFASGVLVV-------GVGKATKLLSYLQNSDKEYVATIRLGVETDTYDIE-----GEVTET-------------- 66 (149)
T ss_dssp S-SSTT-EEEEEE-------EEGGGGGGHHHHTTSEEEEEEEEEESSEETTSBTT-----SSEEEE--------------
T ss_pred cccCCcceEEEEE-------EECCcchHHHHhhccCCEEEEEEEEEEEeCCccee-----eeEEEe--------------
Confidence 3599999999999 9999999999999865 677777799999999996 887642
Q ss_pred eCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecCC
Q psy4559 150 FKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPP 229 (336)
Q Consensus 150 ~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~p 229 (336)
...+.++.++|+++|..|+|+++|+|| + |||+|+||+|||||||+|+++|+++|+|+||+|++++|+.|
T Consensus 67 ~~~~~it~e~l~~~l~~f~G~~~Q~pP---------~--ySAvki~G~raY~lAR~G~~v~~~~r~v~I~~i~l~~~~~~ 135 (149)
T PF01509_consen 67 KPYDHITEEDLEKVLAKFQGEIEQVPP---------M--YSAVKINGKRAYELARKGEEVELPPRPVTIYSIELLSFNPP 135 (149)
T ss_dssp ---TT--HHHHHHHHHHTSEEEEES-S---------S--SSSSECTTCEHHHHHHTTSSTSSS-EEEEEEEEEEEEEETT
T ss_pred eccccCCHHHHHHHHHhCcCCEeeeCc---------h--heeEcCCCccHHHHHHCCCccCCCCeeEEEEEEEEEEEcCC
Confidence 245679999999999999999999999 7 99999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCChhhH
Q psy4559 230 DFTIEVHCIGEYEEFL 245 (336)
Q Consensus 230 ~~~l~V~CSkG~~TYI 245 (336)
.|+|+|+||+| |||
T Consensus 136 ~~~~~v~cs~G--TYi 149 (149)
T PF01509_consen 136 EFTFEVHCSKG--TYI 149 (149)
T ss_dssp EEEEEEEECTT--TTH
T ss_pred eEEEEEEEcCc--ccC
Confidence 99999999999 998
No 28
>cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like. This group consists of eukaryotic and archeal pseudouridine synthases similar to human dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila melanogaster Mfl (minifly protein). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactor is required. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. D. melanogaster mfl hosts in its fourth intron, a box H/AC snoRNA gene. In addition dyskerin is likely to have a structural role in the telomerase complex. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Mutations in Drosophila Mfl r
Probab=100.00 E-value=4.6e-35 Score=263.73 Aligned_cols=141 Identities=15% Similarity=0.184 Sum_probs=123.7
Q ss_pred eeecCCCCccccccccccccCCcchHHHHHhhhhcCC-chhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceee
Q psy4559 70 VSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCV 148 (336)
Q Consensus 70 ~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI 148 (336)
.--|||+|+||||+ ++|++||+++++.+.+ .+.....+ |.
T Consensus 34 ~GTLDp~A~GvLiv-------~~g~~Tk~~~~~~~~~K~Y~a~v~~---------------g~----------------- 74 (182)
T cd02572 34 SGTLDPKVTGCLPV-------CIDRATRLVKSQQEAGKEYVCVMRL---------------HD----------------- 74 (182)
T ss_pred CCCCCCcCeeEEEE-------EECHHhhhhHHHhCCCCEEEEEEEE---------------CC-----------------
Confidence 35699999999999 9999999999998754 34433212 21
Q ss_pred eeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecC
Q psy4559 149 HFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKP 228 (336)
Q Consensus 149 ~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~ 228 (336)
.++.+++++++..|+|++.|+|| + |||+|+ ++|+++||++++++|++
T Consensus 75 -----~it~e~l~~~l~~f~G~i~Q~pP---------~--~SA~K~-----------------~~R~v~I~~i~l~~~~~ 121 (182)
T cd02572 75 -----DVDEEKVRRVLEEFTGAIFQRPP---------L--ISAVKR-----------------QLRVRTIYESKLLEYDG 121 (182)
T ss_pred -----cCCHHHHHHHHHHCCCcEEeeCC---------H--hheecC-----------------CceEEEEEEEEEEEEcC
Confidence 26889999999999999999999 8 999992 57999999999999987
Q ss_pred --CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecc-cCccccccccC
Q psy4559 229 --PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQF-GLEHSLLRKHW 284 (336)
Q Consensus 229 --p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F-~le~Al~le~~ 284 (336)
|.++|+|+||+| |||||||||||.+|||+|||+.||||++|+| .+++|++++++
T Consensus 122 ~~~~~~~~v~cs~G--TYIRsL~~dlg~~Lg~~a~l~~L~R~~~G~f~~~~~~~~~~~~ 178 (182)
T cd02572 122 ERRLVLFRVSCEAG--TYIRTLCVHIGLLLGVGAHMQELRRTRSGPFSEEDNMVTLHDV 178 (182)
T ss_pred CCcEEEEEEEECCC--cCHHHHHHHHHHHHCCCeEEEEEEeEEEcCcCchhccccHHHH
Confidence 999999999999 9999999999999999999999999999999 99999865544
No 29
>KOG2559|consensus
Probab=99.94 E-value=6.4e-27 Score=219.57 Aligned_cols=163 Identities=31% Similarity=0.582 Sum_probs=143.8
Q ss_pred CCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecCCeeE
Q psy4559 153 PDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFT 232 (336)
Q Consensus 153 ~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~p~~~ 232 (336)
..++.+.|++.+...+++-+.. +.+|++++++.++||||||+|+.++..+.+..||.|+|+.|.+|.|+
T Consensus 141 dhVs~~ri~~vla~lq~shq~a-----------~f~~~nvDl~tqEAyElA~RGl~Rp~~~s~~ivygI~l~~F~~P~F~ 209 (318)
T KOG2559|consen 141 DHVSKHRIEKVLARLQSSHQSA-----------SFRHANVDLETQEAYELARRGLPRPQLPSSQIVYGIDLNWFRSPKFS 209 (318)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-----------HHHhcCCCchhHHHHHHHHccCCCcCCCCCceEEEEeeeeecCCccE
Confidence 4689999999999888876554 55599999999999999999999999999999999999999999999
Q ss_pred EEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCChhHHHHHhhhhhhhhccc-C-CcCCCC
Q psy4559 233 IEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKM-D-PMRPQL 310 (336)
Q Consensus 233 l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~l~~I~~~i~~~~~lL~~~-p-~~~~~l 310 (336)
++++|+.+|+.|+|.|+|+||..||+.|+|++|||++.|+|++++|+..++|+++||.+||...++++..- . ..+|+|
T Consensus 210 le~qc~~Etqe~Lr~LVh~igl~L~T~a~c~qlrr~r~g~F~~d~aLLr~qw~L~nI~~nir~~r~~i~s~~~k~~sp~l 289 (318)
T KOG2559|consen 210 LETQCSGETQEMLRQLVHHIGLNLGTEATCIQLRRQRFGPFGSDNALLRKQWNLQNIARNIRLNRKIITSVNKKIVSPSL 289 (318)
T ss_pred EEEeeccccHHHHHHHHHHHhhcccceeeeeeeeeeccCCCCccHHHHHHhhccHHHHHHHHHcchhhhHHHHhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988776522 2 467777
Q ss_pred ceeee-CCCCCCCCCCC
Q psy4559 311 QSVNM-TDSDSTDGSNV 326 (336)
Q Consensus 311 ~~v~~-~~~~~~~~~~~ 326 (336)
...+. .+--++||-..
T Consensus 290 ~~~q~~~~~~~~D~~g~ 306 (318)
T KOG2559|consen 290 EPEQSTKNREIFDGFGL 306 (318)
T ss_pred ChhhcCCccccccCcCc
Confidence 66655 44455665544
No 30
>cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4. This group consists of Eukaryotic TruB proteins similar to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4, makes psi55 in the T loop of both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=99.51 E-value=2.5e-15 Score=145.98 Aligned_cols=159 Identities=14% Similarity=0.086 Sum_probs=110.3
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCC--CCCceeecceeeeeCC--CCCchhhhhhhccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPAL--LKEPVVYGLKCVHFKP--PDFTIGNLYSALLP 166 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~--dreg~I~gielI~~~~--~~~t~e~i~~~L~~ 166 (336)
..+.+++++..|.|...|.+|+||++++||+++||+||+|++.|.. .|+..|+.++++.+.. +.++.+
T Consensus 122 t~e~i~~~l~~F~G~i~Q~PP~ySAvKv~GkrlYeyAR~G~~v~~~~~~R~V~I~~~~l~~~~~~~~~~~~~-------- 193 (312)
T cd02867 122 TREDIEEVLAKFRGDIKQVPPLYSALKMDGKRLYEYAREGKPLPRPIERRQVVVSELLVKDWIEPGPLFTRT-------- 193 (312)
T ss_pred CHHHHHHHHHhcceeeeeeCcchheeeeCCHHHHHHHhCCccccCCCCCceEEEEEEEEEeccCCCCeEEEE--------
Confidence 5788999999999999999999999999999999999999988766 7889999999887763 223322
Q ss_pred cccceeeecCccchhhhhhhccccccccCC-hHHHHHHHc--CCCcCC---C-CCcceEEEEEEeeecCCeeEEEEEEec
Q psy4559 167 WQEAVLKITDNNCLFVCLFVHRQAGVRLNS-QEAYDIARQ--GPIRPA---L-LKEPVVYGLKCVHFKPPDFTIEVHCIG 239 (336)
Q Consensus 167 f~G~i~QvPP~~~k~I~~imp~ySAvKv~G-kraYeLAR~--G~~ve~---~-~R~v~Iy~i~ll~~~~p~~~l~V~CSk 239 (336)
+.+ ..++||+++..+ =|.+.+. --+.+|.|. |..-.. . .-+..+.+.+ ...-.+|.
T Consensus 194 ----v~c---skGTYIRsL~~D-ig~~Lg~~a~~~~L~Rt~~g~f~~~~~~~~~~~~~~~~~~---------~~~~~~s~ 256 (312)
T cd02867 194 ----VEE---EGKQYERSVVKM-LGKELKTFAEVTELTATAEGDPVEEVEATHEESKRKSEVE---------EEANEKSL 256 (312)
T ss_pred ----EEe---CCcCCHHHHHHH-HHHHhCCCeEEEEEEeeeecCcccccccccCCCcccChhh---------hccccccc
Confidence 444 368899998744 2222211 111111111 110000 0 0000000000 01112899
Q ss_pred CChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCc
Q psy4559 240 EYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLE 276 (336)
Q Consensus 240 G~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le 276 (336)
| ||||||..|+|+++++.|+|+.|.|+++|.|.++
T Consensus 257 g--~~~~sl~~~~~~~~~~s~~~v~l~r~~q~~~~~~ 291 (312)
T cd02867 257 G--PEARSLESDAGRGSFSPAAMVRLARVGQGTYIRQ 291 (312)
T ss_pred C--cccccccchhhhhccCCcceEeEEeecccceeec
Confidence 9 9999999999999999999999999999999985
No 31
>TIGR00431 TruB tRNA pseudouridine 55 synthase. TruB, the tRNA pseudouridine 55 synthase, converts uracil to pseudouridine in the T loop (not the anticodon loop - beware mis-annotation in Swiss-Prot) of most tRNAs of all three domains of life. This model is built on a seed alignment of bacterial proteins only. Saccharomyces cerevisiae protein YNL292w (Pus4) has been shown to be the pseudouridine 55 synthase of both cytosolic and mitochondrial compartments, active at no other position on tRNA and the only enzyme active at that position in the species. A distinct yeast protein YLR175w, (centromere/microtubule-binding protein CBF5) is an rRNA pseudouridine synthase, and the archaeal set is much more similar to CBF5 than to Pus4. It is unclear whether the archaeal proteins found by this model are tRNA pseudouridine 55 synthases like TruB, rRNA pseudouridine synthases like CBF5, or (as suggested by the absence of paralogs in the Archaea) both. CBF5 likely has additional, eukaryotic-specific
Probab=98.54 E-value=5.4e-08 Score=90.38 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=73.5
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA 170 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~ 170 (336)
..+++++++..|+|..+|.+|+|||++.+|+++|++||+|+..+...++..|+++++++|+.+.++.+
T Consensus 94 ~~~~l~~~l~~f~G~~~Q~PP~ySA~Kv~G~raYelAR~g~~v~~~~r~v~I~~i~ll~~~~~~~~~~------------ 161 (209)
T TIGR00431 94 TTEDVEAALPTFRGEIEQIPPMYSALKVNGKRLYEYARQGIEVERKARPVTVYDLQFLKYEGPELTLE------------ 161 (209)
T ss_pred CHHHHHHHHHHccCcEEEECChhhEEeeCCHhHHHHHHCCCccccCcceeEEEEEEEEEEcCCcEEEE------------
Confidence 46799999999999999999999999999999999999999999999999999999999987765554
Q ss_pred eeeecCccchhhhhhhcc
Q psy4559 171 VLKITDNNCLFVCLFVHR 188 (336)
Q Consensus 171 i~QvPP~~~k~I~~imp~ 188 (336)
+... .++|||++..+
T Consensus 162 v~cs---~GTYIRsL~~D 176 (209)
T TIGR00431 162 VHCS---KGTYIRTLARD 176 (209)
T ss_pred EEEC---CCCCHHHHHHH
Confidence 5555 67899999743
No 32
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. This entry represents pseudouridine synthase TruB, as well as Cbf5p that modifies rRNA [].; GO: 0006396 RNA processing; PDB: 1SGV_B 2AUS_C 3UAI_A 3U28_A 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=98.53 E-value=2.1e-08 Score=88.39 Aligned_cols=69 Identities=23% Similarity=0.385 Sum_probs=61.2
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchh
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIG 158 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e 158 (336)
+..++++++++.|+|..+|.+|.|||++++|+++|++||+|+.++...++..|++++++++..+.++.+
T Consensus 72 it~e~l~~~l~~f~G~~~Q~pP~ySAvki~G~raY~lAR~G~~v~~~~r~v~I~~i~l~~~~~~~~~~~ 140 (149)
T PF01509_consen 72 ITEEDLEKVLAKFQGEIEQVPPMYSAVKINGKRAYELARKGEEVELPPRPVTIYSIELLSFNPPEFTFE 140 (149)
T ss_dssp --HHHHHHHHHHTSEEEEES-SSSSSSECTTCEHHHHHHTTSSTSSS-EEEEEEEEEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHhCcCCEeeeCchheeEcCCCccHHHHHHCCCccCCCCeeEEEEEEEEEEEcCCeEEEE
Confidence 367999999999999999999999999999999999999999999999999999999999998866554
No 33
>KOG2559|consensus
Probab=98.52 E-value=7.5e-08 Score=91.78 Aligned_cols=87 Identities=29% Similarity=0.432 Sum_probs=78.3
Q ss_pred cCCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccc
Q psy4559 89 VPSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQ 168 (336)
Q Consensus 89 v~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~ 168 (336)
..+.++++|++..++++++.+..+++++.+.|++|||+|+.|.++|..++...||||+|+.|.+|.|+.|
T Consensus 142 hVs~~ri~~vla~lq~shq~a~f~~~nvDl~tqEAyElA~RGl~Rp~~~s~~ivygI~l~~F~~P~F~le---------- 211 (318)
T KOG2559|consen 142 HVSKHRIEKVLARLQSSHQSASFRHANVDLETQEAYELARRGLPRPQLPSSQIVYGIDLNWFRSPKFSLE---------- 211 (318)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHccCCCcCCCCCceEEEEeeeeecCCccEEE----------
Confidence 3467899999999999999888899999999999999999999999999999999999999999999988
Q ss_pred cceeeecCccchhhhhhhcc
Q psy4559 169 EAVLKITDNNCLFVCLFVHR 188 (336)
Q Consensus 169 G~i~QvPP~~~k~I~~imp~ 188 (336)
.+..- ++|+++++.++.
T Consensus 212 --~qc~~-Etqe~Lr~LVh~ 228 (318)
T KOG2559|consen 212 --TQCSG-ETQEMLRQLVHH 228 (318)
T ss_pred --Eeecc-ccHHHHHHHHHH
Confidence 55554 589999888843
No 34
>PRK00130 truB tRNA pseudouridine synthase B; Provisional
Probab=98.44 E-value=1.2e-07 Score=91.84 Aligned_cols=82 Identities=10% Similarity=0.162 Sum_probs=73.2
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA 170 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~ 170 (336)
..+++++++..|.|..+|.+|+|||++.+|+++|++||+|+..+...++..|++++++++..+.++.+
T Consensus 95 t~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~~~~~~~------------ 162 (290)
T PRK00130 95 TEEEIREAILSFQGEIDQVPPMYSALKINGKKLYELARQGIEVEREARKITIYDIEILEIDLPYVIFD------------ 162 (290)
T ss_pred CHHHHHHHHHHccCeEEEECChHHeEecCCHhHHHHHHCCCccccCceEEEEEEEEEEEEeCCeEEEE------------
Confidence 57889999999999999999999999999999999999999999999999999999999976655554
Q ss_pred eeeecCccchhhhhhhc
Q psy4559 171 VLKITDNNCLFVCLFVH 187 (336)
Q Consensus 171 i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 163 v~cs---kGTYIRsL~~ 176 (290)
T PRK00130 163 VKCS---KGTYIRSLCF 176 (290)
T ss_pred EEEC---CCCCHHHHHH
Confidence 5555 6899999973
No 35
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=98.43 E-value=1.2e-07 Score=87.97 Aligned_cols=84 Identities=23% Similarity=0.486 Sum_probs=70.6
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA 170 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~ 170 (336)
..++++++++.|+|..+|.+|+||+++.+|+++||+||+|+..+...++..|++++++++..+....+ =.
T Consensus 93 t~e~l~~~l~~f~G~i~Q~pP~ySAvKv~G~raYelAR~G~~v~~~~r~v~I~~i~ll~~~~~~~~~~----------~~ 162 (210)
T cd00506 93 THEQLERALETLTGDIQQVPPLYSAVKRQGQRAYELARRGLLVPDEARPPTIYELLCIRFNPPHFLLE----------VE 162 (210)
T ss_pred CHHHHHHHHHHCCCeEEEeCCchheEEECCHhHHHHHHCCCccccCcEeEEEEEEEEEEEcCCCcEEE----------EE
Confidence 56899999999999999999999999999999999999999999999999999999999976421111 01
Q ss_pred eeeecCccchhhhhhhc
Q psy4559 171 VLKITDNNCLFVCLFVH 187 (336)
Q Consensus 171 i~QvPP~~~k~I~~imp 187 (336)
+.. ..++||++++.
T Consensus 163 v~c---s~GTYIRsL~~ 176 (210)
T cd00506 163 VVC---ETGTYIRTLIH 176 (210)
T ss_pred EEE---CCCcCHHHHHH
Confidence 333 37899999973
No 36
>PRK04099 truB tRNA pseudouridine synthase B; Provisional
Probab=98.42 E-value=1.4e-07 Score=90.82 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=74.3
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhcccccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQE 169 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G 169 (336)
...+++++++..|+|..+|.||+|||++++|+++|++||+|+..+...++..|++++++++..+.++.+
T Consensus 93 ~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~~~ll~~~~p~~~f~----------- 161 (273)
T PRK04099 93 FDKDLIEKILKSLQGEISYTPPKFSAKKINGKRAYELARKGEEFELKPITMEIFDCKLLSYNHPFLTFE----------- 161 (273)
T ss_pred CCHHHHHHHHHhCcceEEEeCChhhEEeeCCHhHHHHHhCCcccccCceeEEEEEEEEEEEeCCEEEEE-----------
Confidence 467889999999999999999999999999999999999999999999999999999999987655554
Q ss_pred ceeeecCccchhhhhhhcc
Q psy4559 170 AVLKITDNNCLFVCLFVHR 188 (336)
Q Consensus 170 ~i~QvPP~~~k~I~~imp~ 188 (336)
+.+- .++|||++..+
T Consensus 162 -v~cs---~GTYIRSL~~D 176 (273)
T PRK04099 162 -ITVS---EGAYIRSLGEL 176 (273)
T ss_pred -EEEC---CCCCHHHHHHH
Confidence 5553 78999999743
No 37
>PRK14124 tRNA pseudouridine synthase B; Provisional
Probab=98.40 E-value=1.6e-07 Score=91.74 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhcccccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQE 169 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G 169 (336)
...+++++++..|.|...|.+|+||+++.+|+++|++||+|+..+...++..|+++++++|..+.++.+
T Consensus 94 ~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~----------- 162 (308)
T PRK14124 94 VTEEEIREAIFSFVGEYKQVPPAYSAKKYKGERLYKLAREGKIINLPPKEVKIYEIWDISIEGPDVSFR----------- 162 (308)
T ss_pred CCHHHHHHHHHhCcCeEEEeCCchHeEEECChhHHHHHhCCCccccCceeeEEEEEEEEEEeCCeEEEE-----------
Confidence 467889999999999999999999999999999999999999999999999999999999987665554
Q ss_pred ceeeecCccchhhhhhhc
Q psy4559 170 AVLKITDNNCLFVCLFVH 187 (336)
Q Consensus 170 ~i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 163 -v~cs---kGTYIRsL~~ 176 (308)
T PRK14124 163 -VEVS---PGTYIRSLCM 176 (308)
T ss_pred -EEEC---CCCCHHHHHH
Confidence 6665 7899999974
No 38
>PRK01851 truB tRNA pseudouridine synthase B; Provisional
Probab=98.40 E-value=1.6e-07 Score=91.59 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=74.1
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhcccccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQE 169 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G 169 (336)
+..+++++++..|.|..+|.+|+||+++.+|+++|++||+|+..+...|+..|++++++++..+.++.+
T Consensus 107 ~t~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~~~~~~~----------- 175 (303)
T PRK01851 107 CDPAALEAALARFTGEIRQVPPMYSALKKDGKPLYEYARAGITVEREARDVTIHALDLLACDLPDVTIR----------- 175 (303)
T ss_pred CCHHHHHHHHHhccCeeeeeCCchheEeeCCeeHHHHHhCCCccccCCcceEEEEEEEEEEeCCEEEEE-----------
Confidence 468899999999999999999999999999999999999999999999999999999999987655554
Q ss_pred ceeeecCccchhhhhhhc
Q psy4559 170 AVLKITDNNCLFVCLFVH 187 (336)
Q Consensus 170 ~i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 176 -v~cs---kGTYIRsL~~ 189 (303)
T PRK01851 176 -VTCS---KGTYIRTLAE 189 (303)
T ss_pred -EEEC---CCCCHHHHHH
Confidence 6665 7889999973
No 39
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.
Probab=98.39 E-value=1.8e-07 Score=90.04 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=73.1
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCC--CCCchhhhhhhcccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP--PDFTIGNLYSALLPW 167 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~--~~~t~e~i~~~L~~f 167 (336)
+..+++++++..|.|..+|.+|+|||+++||+++|++||+|+..+...|+..|++++++++.. +.++.+
T Consensus 92 ~~~~~i~~~l~~f~G~i~Q~PP~ySAvkv~G~raYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~~~--------- 162 (277)
T cd02573 92 LTEEEIEAALKAFTGEIEQVPPMYSAVKVNGKRLYELARAGEEVERPPRKVTIYSLELLSFDPENPEADFE--------- 162 (277)
T ss_pred CCHHHHHHHHHHccCcEEeeCChhHeEeeCCccHHHHHhCCCccccCCeeEEEEEEEEEEecCCCCeEEEE---------
Confidence 467889999999999999999999999999999999999999999999999999999999876 444444
Q ss_pred ccceeeecCccchhhhhhhc
Q psy4559 168 QEAVLKITDNNCLFVCLFVH 187 (336)
Q Consensus 168 ~G~i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 163 ---v~cs---~GTYIRsL~~ 176 (277)
T cd02573 163 ---VECS---KGTYIRSLAR 176 (277)
T ss_pred ---EEEC---CCCcHHHHHH
Confidence 5555 6789999973
No 40
>PRK02193 truB tRNA pseudouridine synthase B; Provisional
Probab=98.35 E-value=2.9e-07 Score=88.81 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=71.0
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCC--Cchhhhhhhcccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD--FTIGNLYSALLPW 167 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~--~t~e~i~~~L~~f 167 (336)
+..+.+++++..|.|..+|.+|+|||++.+|+++|++||+|+..+...++..|+++++++|..+. ++.+
T Consensus 92 ~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~~~--------- 162 (279)
T PRK02193 92 VTKENLEEALNNLVGSQKQVPPVFSAKKVNGKRAYDLARQGKQIELKPIEIKISKIELLNFDEKLQNCVFM--------- 162 (279)
T ss_pred CCHHHHHHHHHhCcCeEEEeCChHHeEeeCCHhHHHHHhCCceeccCCeeEEEEEEEEEEEcCCCceEEEE---------
Confidence 36789999999999999999999999999999999999999999999999999999999997542 2221
Q ss_pred ccceeeecCccchhhhhhhc
Q psy4559 168 QEAVLKITDNNCLFVCLFVH 187 (336)
Q Consensus 168 ~G~i~QvPP~~~k~I~~imp 187 (336)
+..- .++|||++..
T Consensus 163 ---v~cs---kGTYIRsL~~ 176 (279)
T PRK02193 163 ---WVVS---RGTYIRSLIH 176 (279)
T ss_pred ---EEEC---CCcCHHHHHH
Confidence 4443 7899999874
No 41
>PRK00989 truB tRNA pseudouridine synthase B; Provisional
Probab=98.33 E-value=2.9e-07 Score=86.72 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=71.8
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhcccccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQE 169 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G 169 (336)
+..+++++++..|+|..+|.+|+||+++++|+++|++||+|+..+...++..|+ ++++++..+.++.+
T Consensus 101 ~~~~~i~~~l~~f~G~~~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~i~-~~ll~~~~p~~~~~----------- 168 (230)
T PRK00989 101 PTLEEVLSAASYFQGEIQQVPPMFSAKKVQGKKLYEYARQGLSIERRPSTVQVH-LQLTKYEYPLLHFV----------- 168 (230)
T ss_pred CCHHHHHHHHHhCcceEEeeCChhHeEEECCHhHHHHHhCCCccccCcEEEEEE-EEEEEeeCCeEEEE-----------
Confidence 467899999999999999999999999999999999999999988888888887 89999876655554
Q ss_pred ceeeecCccchhhhhhhcc
Q psy4559 170 AVLKITDNNCLFVCLFVHR 188 (336)
Q Consensus 170 ~i~QvPP~~~k~I~~imp~ 188 (336)
+.+. .++|||++..+
T Consensus 169 -v~cs---~GTYIRSL~~D 183 (230)
T PRK00989 169 -VQCS---KGTYIRSIAHE 183 (230)
T ss_pred -EEEc---CCCcHHHHHHH
Confidence 6665 67899999743
No 42
>PRK00020 truB tRNA pseudouridine synthase B; Provisional
Probab=98.32 E-value=2.8e-07 Score=87.47 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=71.9
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA 170 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~ 170 (336)
..+++++++..|.|...|.+|+||+++.+|+++|++||+|+..+...++..|++++++++..+.++.+
T Consensus 105 t~e~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~------------ 172 (244)
T PRK00020 105 EEAALRDVLSRFVGTIEQIPPMYSALKRDGKPLYEYARAGIELDRPPRQVTIRHIELLSFSGMQAQID------------ 172 (244)
T ss_pred CHHHHHHHHHhccCeEEEeCChhheEEECCeEHHHHHhCCcccccCCeeEEEEEEEEEEEeCCEEEEE------------
Confidence 57899999999999999999999999999999999999999999999999999999999976544332
Q ss_pred eeeecCccchhhhhhhc
Q psy4559 171 VLKITDNNCLFVCLFVH 187 (336)
Q Consensus 171 i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 173 v~cS---kGTYIRSL~~ 186 (244)
T PRK00020 173 VACS---KGTYIRTLAQ 186 (244)
T ss_pred EEEC---CCcCHHHHHH
Confidence 5554 7899999973
No 43
>PRK05033 truB tRNA pseudouridine synthase B; Provisional
Probab=98.31 E-value=3.1e-07 Score=89.89 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=73.2
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhcccccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQE 169 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G 169 (336)
+..+++++++..|.|..+|.+|+||+++.+|+++|++||+|+..+...++..|++++++++..+.++.+
T Consensus 101 ~t~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~----------- 169 (312)
T PRK05033 101 LSAEQLEAALEKFRGDIEQVPSMYSALKYQGQPLYEYARQGIEVEREARPITIYELELIRFEGDELELE----------- 169 (312)
T ss_pred CCHHHHHHHHHHCcCcEEEeCChhHeEeeCCeEHHHHHhCCcccccCceeEEEEEEEEeeEeCCEEEEE-----------
Confidence 367899999999999999999999999999999999999999999999999999999999976554444
Q ss_pred ceeeecCccchhhhhhhc
Q psy4559 170 AVLKITDNNCLFVCLFVH 187 (336)
Q Consensus 170 ~i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 170 -v~cs---~GTYIRsL~~ 183 (312)
T PRK05033 170 -VHCS---KGTYIRTLVD 183 (312)
T ss_pred -EEEC---CCCCHHHHHH
Confidence 5555 6889999973
No 44
>PRK05389 truB tRNA pseudouridine synthase B; Provisional
Probab=98.30 E-value=3.7e-07 Score=89.08 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=72.0
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeC-CCCCchhhhhhhccccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFK-PPDFTIGNLYSALLPWQ 168 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~-~~~~t~e~i~~~L~~f~ 168 (336)
...+++++++..|.|...|.+|+|||++.+|+++|++||+|+..+...++..|++++++++. .+.++.+
T Consensus 104 ~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~~---------- 173 (305)
T PRK05389 104 PTDEEIRAALPAFTGEIMQVPPQFSAIKIDGERAYDLAREGETVELPARPVEIDRLTLVERPDADHAVFE---------- 173 (305)
T ss_pred CCHHHHHHHHHhccceEEEeCCchheEEECCHhHHHHHHCCCccccCceEEEEEEEEEEEecCCCeEEEE----------
Confidence 36788999999999999999999999999999999999999999999999999999999984 3434443
Q ss_pred cceeeecCccchhhhhhhc
Q psy4559 169 EAVLKITDNNCLFVCLFVH 187 (336)
Q Consensus 169 G~i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 174 --v~cs---kGTYIRsL~~ 187 (305)
T PRK05389 174 --VECG---KGTYVRSLAR 187 (305)
T ss_pred --EEeC---CCCCHHHHHH
Confidence 5665 6889999974
No 45
>PRK02755 truB tRNA pseudouridine synthase B; Provisional
Probab=98.30 E-value=3.8e-07 Score=88.66 Aligned_cols=82 Identities=10% Similarity=0.241 Sum_probs=71.5
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCC---CCCchhhhhhhcccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP---PDFTIGNLYSALLPW 167 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~---~~~t~e~i~~~L~~f 167 (336)
..+++++++..|.|..+|.+|+||+++.+|+++|++||+|+..+...|+..|++++++++.. +.++.+
T Consensus 95 ~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~G~r~Y~lAR~G~~ve~~~r~v~I~~~~l~~~~~~~~~~~~~~--------- 165 (295)
T PRK02755 95 SLAEIETALPQFRGKIEQRPPQYSAIQVDGERLYALARRGETMELPARTVTIFRLQLLDWRPGDQPELDLE--------- 165 (295)
T ss_pred CHHHHHHHHHhccCeEEEeCChhheEeeCCHhHHHHHHCCCccccCceEEEEEEEEEEEEcCCCCceEEEE---------
Confidence 57889999999999999999999999999999999999999999999999999999999864 333333
Q ss_pred ccceeeecCccchhhhhhhc
Q psy4559 168 QEAVLKITDNNCLFVCLFVH 187 (336)
Q Consensus 168 ~G~i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 166 ---v~cs---kGTYIRsL~~ 179 (295)
T PRK02755 166 ---IHCG---AGTYIRSLAR 179 (295)
T ss_pred ---EEEC---CCcCHHHHHH
Confidence 5565 7899999973
No 46
>PRK01528 truB tRNA pseudouridine synthase B; Provisional
Probab=98.26 E-value=5.4e-07 Score=87.47 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=70.5
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCC--Cchhhhhhhcccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD--FTIGNLYSALLPW 167 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~--~t~e~i~~~L~~f 167 (336)
+..+++++++..|.|..+|.+|+|||++.+|+++|++||+|+..+...++..|++++++++..+. ++.+
T Consensus 94 ~~~e~l~~~l~~f~G~i~Q~PP~ySAvKv~G~raYelAR~G~~vel~~r~v~I~~i~ll~~~~~~~~~~~~--------- 164 (292)
T PRK01528 94 PSKEEAYAVCSKFIGNITQIPPAFSALKVNGVRAYKLAREGKEVELKPRNITIYDLKCLNFDEKNATATYY--------- 164 (292)
T ss_pred CCHHHHHHHHHhccceEEeeCChhHeEEECCHhHHHHHhCCcccccCceeEEEEEEEEEEEcCCCcEEEEE---------
Confidence 36789999999999999999999999999999999999999988888899999999999987532 2221
Q ss_pred ccceeeecCccchhhhhhhc
Q psy4559 168 QEAVLKITDNNCLFVCLFVH 187 (336)
Q Consensus 168 ~G~i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 165 ---v~cs---kGTYIRsL~~ 178 (292)
T PRK01528 165 ---TECS---KGTYIRTLAE 178 (292)
T ss_pred ---EEEC---CCccHHHHHH
Confidence 4454 7899999973
No 47
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=98.25 E-value=8.6e-07 Score=83.15 Aligned_cols=84 Identities=27% Similarity=0.540 Sum_probs=71.5
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA 170 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~ 170 (336)
..+++++++..|+|..++.+|.||+++.+|+++|++||+|++.+...++..|+++++++|..+.++.+
T Consensus 100 t~~~i~~~l~~f~g~~~q~~p~~sa~kv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~p~~~~~------------ 167 (226)
T cd02868 100 TREKIERLLAVIQSGHQQKAFELCSVDDQSQQAAELAARGLIRPADKSPPIIYGIRLLEFRPPEFTLE------------ 167 (226)
T ss_pred CHHHHHHHHHHhhCCceEECCceEEEeeCCHHHHHHHHCCCccCCCCcceEEEEEEEEEecCCeEEEE------------
Confidence 67889999999998887777889999999999999999999999999999999999999987766654
Q ss_pred eeeecCccchhhhhhhc
Q psy4559 171 VLKITDNNCLFVCLFVH 187 (336)
Q Consensus 171 i~QvPP~~~k~I~~imp 187 (336)
+.+..- +++|||++..
T Consensus 168 v~cskG-T~~YIRsL~~ 183 (226)
T cd02868 168 VQCINE-TQEYLRKLIH 183 (226)
T ss_pred EEEECC-CHHHHHHHHH
Confidence 666632 3449999973
No 48
>PRK14123 tRNA pseudouridine synthase B; Provisional
Probab=98.21 E-value=8e-07 Score=86.76 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=69.3
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee---eCC--CCCchhhhhhhcc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH---FKP--PDFTIGNLYSALL 165 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~---~~~--~~~t~e~i~~~L~ 165 (336)
..+++++++..|+|..+|.+|+|||++.+|+++|++||+|+..+...|+..|+++++++ |.. +.++.+
T Consensus 98 ~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~~~~~~~~~~~~~~~~~~------- 170 (305)
T PRK14123 98 NKDDIDRLLEQFKGIIEQIPPMYSSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIR------- 170 (305)
T ss_pred CHHHHHHHHHhccCceeecCChhheEeeCCHhHHHHHhCCCcccCCceEEEEEEEEEeecccccCCCceEEEE-------
Confidence 57889999999999999999999999999999999999999999999999999999874 432 223332
Q ss_pred ccccceeeecCccchhhhhhhc
Q psy4559 166 PWQEAVLKITDNNCLFVCLFVH 187 (336)
Q Consensus 166 ~f~G~i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 171 -----v~cs---kGTYIRsL~~ 184 (305)
T PRK14123 171 -----VICG---KGTYIRTLAT 184 (305)
T ss_pred -----EEeC---CCcCHHHHHH
Confidence 5555 6889999973
No 49
>PRK14846 truB tRNA pseudouridine synthase B; Provisional
Probab=98.19 E-value=9.1e-07 Score=87.58 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=70.6
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhcccccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQE 169 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G 169 (336)
...+++++++..|.|..+|.+|+|||++++|+++|++||+|+..+...++..|+++++++|..+....+ +
T Consensus 94 ~~~e~l~~~L~~f~G~i~Q~PP~ySAvKv~GkraYelARkG~~Vel~~R~V~I~~i~ll~f~~~~~~~~-~--------- 163 (345)
T PRK14846 94 PSQEEAYAVCSKFIGNVTQIPPAFSALKVNGVRAYKLAREGKKVELKPRNITIYDLKCLNFDEKNATAT-Y--------- 163 (345)
T ss_pred CCHHHHHHHHHhCcceEEeeCChhheEeECChhHHHHHhCCCccccCceeEEEEEEEEEEEcCCCcEEE-E---------
Confidence 356899999999999999999999999999999999999999888888999999999999975321111 0
Q ss_pred ceeeecCccchhhhhhhcc
Q psy4559 170 AVLKITDNNCLFVCLFVHR 188 (336)
Q Consensus 170 ~i~QvPP~~~k~I~~imp~ 188 (336)
.+.. ..++|||++..+
T Consensus 164 ~v~C---SkGTYIRSLa~D 179 (345)
T PRK14846 164 YTEC---SKGTYIRTLAED 179 (345)
T ss_pred EEEE---CCCCcHHHHHHH
Confidence 1333 378999999743
No 50
>PRK02484 truB tRNA pseudouridine synthase B; Provisional
Probab=98.16 E-value=1.2e-06 Score=85.19 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=69.0
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeee---eC---CCCCchhhhhhh
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVH---FK---PPDFTIGNLYSA 163 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~---~~---~~~~t~e~i~~~ 163 (336)
...+++++++..|+|..+|.+|+||+++++|+++|++||+|+..+...|+..|++++++. +. .+.++.
T Consensus 96 ~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~~~~~~~~~~~~------ 169 (294)
T PRK02484 96 LTEEEVDQAMTSFTGKITQIPPMYSAVKVNGKKLYEYARAGEEVERPKRQVTIYQFERTSPLSFDEDGLCRFSF------ 169 (294)
T ss_pred CCHHHHHHHHHhccCeEEEeCChhHeEeeCCHhHHHHHHCCCccccCceEEEEEEEEEeccccccccCCceEEE------
Confidence 367899999999999999999999999999999999999999888889999999999874 42 122222
Q ss_pred ccccccceeeecCccchhhhhhhc
Q psy4559 164 LLPWQEAVLKITDNNCLFVCLFVH 187 (336)
Q Consensus 164 L~~f~G~i~QvPP~~~k~I~~imp 187 (336)
++.+. .++|||++..
T Consensus 170 ------~v~cs---kGTYIRsL~~ 184 (294)
T PRK02484 170 ------RVACS---KGTYVRTLAV 184 (294)
T ss_pred ------EEEeC---CCCCHHHHHH
Confidence 26665 6889999974
No 51
>PRK14122 tRNA pseudouridine synthase B; Provisional
Probab=98.15 E-value=1.2e-06 Score=85.92 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=58.9
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCC
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP 152 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~ 152 (336)
+..+++++++..|.|..+|.+|+||+++.+|+++|++||+|+..+...|+..|++++++++..
T Consensus 93 ~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~vel~~R~v~I~~i~ll~~~~ 155 (312)
T PRK14122 93 LDEKDLEAALPGFLGLTEQVPPQYSAIKVGGVRAYEAARAGGALELPARPVVYHELELLAFEP 155 (312)
T ss_pred CCHHHHHHHHHhCcCeEEEeCChHHeEEECCeEHHHHHhCCCccccCCeeEEEEEEEEEEecc
Confidence 367899999999999999999999999999999999999999988899999999999999864
No 52
>PRK01550 truB tRNA pseudouridine synthase B; Provisional
Probab=98.15 E-value=1.5e-06 Score=84.75 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=69.0
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA 170 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~ 170 (336)
..+++++++..|.|..+|.+|+|||++.+|+++|++||+|+..+...|+..|++++++++.. .++.+ ...|.=+
T Consensus 96 ~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~Gkr~YelAR~G~~ve~~~r~v~I~~i~ll~~~~-~~~~~-----~~~~~~~ 169 (304)
T PRK01550 96 TREEIEAALASLTGTIEQIPPMYSAVKVNGKKLYEYARAGIEVERPVRQITIHEFVLLDSRE-DFEGE-----TQSFRFR 169 (304)
T ss_pred CHHHHHHHHHhccceEEEeCChhHeEecCCHhHHHHHHCCCccccCCcceEEEEEEEEeecc-ccccC-----CceEEEE
Confidence 68899999999999999999999999999999999999999888889999999999997421 00000 0011112
Q ss_pred eeeecCccchhhhhhhc
Q psy4559 171 VLKITDNNCLFVCLFVH 187 (336)
Q Consensus 171 i~QvPP~~~k~I~~imp 187 (336)
+.+. .++|||++..
T Consensus 170 v~cs---kGTYIRsL~~ 183 (304)
T PRK01550 170 VTCS---KGTYVRTLAV 183 (304)
T ss_pred EEEC---CCCCHHHHHH
Confidence 5555 6899999973
No 53
>TIGR01213 conserved hypothetical protein TIGR01213. Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
Probab=98.12 E-value=1.7e-06 Score=86.83 Aligned_cols=94 Identities=16% Similarity=0.259 Sum_probs=75.9
Q ss_pred eeeCCCCCchhhhhhhcccccc-ceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeee
Q psy4559 148 VHFKPPDFTIGNLYSALLPWQE-AVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHF 226 (336)
Q Consensus 148 I~~~~~~~t~e~i~~~L~~f~G-~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~ 226 (336)
+.+. .+++.+++.+++..+.| .|.|-|| . + ++. | +....|.=+||++++..+
T Consensus 283 V~~~-~~v~~e~L~~~~~~l~g~~I~QrTP---------~-R-V~h-----------R----Ra~~~R~R~I~~i~~~~i 335 (388)
T TIGR01213 283 VEVD-GPVSDEDLEELCKELEGATIYQRTP---------L-R-VLH-----------R----RADLVRERRVYQVDLSGL 335 (388)
T ss_pred EEEC-CCCCHHHHHHHHHhccCCEEEccCC---------c-e-EEE-----------e----cCCCceEEEEEEEEEEEE
Confidence 3444 45899999999999999 7999999 2 0 111 1 233356668999999999
Q ss_pred cCCeeEEEEEEecCChhhHHHHHHH--------HHHHcCCceEeceeEEeeE
Q psy4559 227 KPPDFTIEVHCIGEYEEFLIRLIYD--------LGTKLRSAAICTSIQCIRF 270 (336)
Q Consensus 227 ~~p~~~l~V~CSkG~~TYIRSL~~D--------IG~~LG~~Ahm~~LrRtr~ 270 (336)
++..|.++|.|..| |||+-|||. ||..||+.|+|.+|==+.+
T Consensus 336 ~~~~~~l~v~~qaG--tYIKElV~GD~GRT~PSl~~lLg~~a~i~eLDV~~V 385 (388)
T TIGR01213 336 DGNHAELIIEAEGG--LYIKELVSGDGGRTRPSVSEVLGVEAVCKELDVLKV 385 (388)
T ss_pred cCCEEEEEEEecCC--CEEEEEEcCCCCCcCCcHHHHhCCCceEEEeEEEEE
Confidence 98899999999999 999999997 9999999999999865544
No 54
>PRK03287 truB tRNA pseudouridine synthase B; Provisional
Probab=98.09 E-value=1.8e-06 Score=84.07 Aligned_cols=87 Identities=8% Similarity=0.099 Sum_probs=70.6
Q ss_pred CCcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCC-CCchhhhhhhccccc
Q psy4559 90 PSIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPP-DFTIGNLYSALLPWQ 168 (336)
Q Consensus 90 ~~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~-~~t~e~i~~~L~~f~ 168 (336)
+..+++++++..|.|..+|.+|+|||++.+|+++|++||+|+..+...|+..|+.++++++... ++- .|.
T Consensus 101 it~~~i~~~l~~f~G~i~Q~PP~ySAvKv~Gkr~YelAR~G~~ve~~~R~v~I~~~~l~~~~~~~~~~---------~~~ 171 (298)
T PRK03287 101 VTDEAIAAAVAALTGEIMQVPSAVSAIKVDGKRAYARVRAGEEVELPARPVTVSRFEVLAVRRDGDFI---------DLD 171 (298)
T ss_pred CCHHHHHHHHHhCcCeEEEeCChhHeEEECCHHHHHHHhCCCccccCcEEEEeeeeEEEEEecCCCcc---------EEE
Confidence 3678999999999999999999999999999999999999998888889999999999988642 110 011
Q ss_pred cceeeecCccchhhhhhhcc
Q psy4559 169 EAVLKITDNNCLFVCLFVHR 188 (336)
Q Consensus 169 G~i~QvPP~~~k~I~~imp~ 188 (336)
=++.+. .++|||++..+
T Consensus 172 ~~v~cs---kGTYIRSL~~D 188 (298)
T PRK03287 172 VEVDCS---SGTYIRALARD 188 (298)
T ss_pred EEEEEC---CCcCHHHHHHH
Confidence 125554 78999999743
No 55
>PRK04642 truB tRNA pseudouridine synthase B; Provisional
Probab=98.07 E-value=1.8e-06 Score=84.24 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=71.3
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA 170 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~ 170 (336)
..+.+++++..|.|...|.+|+||+++.+|+++|++||+|+..+...|+..|++++++++..+.++.+
T Consensus 103 ~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkrlY~lAR~G~~ve~~~R~v~I~~~~ll~~~~~~~~~~------------ 170 (300)
T PRK04642 103 SAAALQAALAPLIGRIRQRAPIYSALKQGGEPLYAKARRGEVIEAPVREVEVHAIEVLGYAAPRLRLR------------ 170 (300)
T ss_pred CHHHHHHHHHHCCCcEEEeCCchHeEeECCeeHHHHHhCCCccccCcEEEEEEEEEEEEEeCCEEEEE------------
Confidence 67889999999999999999999999999999999999999888899999999999999875433332
Q ss_pred eeeecCccchhhhhhhc
Q psy4559 171 VLKITDNNCLFVCLFVH 187 (336)
Q Consensus 171 i~QvPP~~~k~I~~imp 187 (336)
+.+- .++|||++..
T Consensus 171 v~cs---kGTYIRSL~~ 184 (300)
T PRK04642 171 VTCG---SGTYIRSLAR 184 (300)
T ss_pred EEeC---CCcCHHHHHH
Confidence 5554 7899999973
No 56
>PRK14554 putative pseudouridylate synthase; Provisional
Probab=97.89 E-value=1.1e-05 Score=81.88 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=86.9
Q ss_pred hccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc-eeeecCccchhhhhhhcccccc
Q psy4559 114 AGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA-VLKITDNNCLFVCLFVHRQAGV 192 (336)
Q Consensus 114 sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~-i~QvPP~~~k~I~~imp~ySAv 192 (336)
.++..-+.+..+..+.+... ..|-. ++.+. .+++.+++.+++..+.|. |.|-|| .
T Consensus 290 ~~l~~~~~~~~~~ik~~~~~-------K~Yra-lV~~~-~~v~~e~l~~~~~~l~~~~I~QrTP---------~------ 345 (422)
T PRK14554 290 ENLRFATRKEVERIKEEKAS-------KTYRA-LVESD-EPVSEEELEKLLDELSGATIEQRTP---------R------ 345 (422)
T ss_pred EEEEEEcHHHHHHHhcCCCc-------eEEEE-EEEEC-CCCCHHHHHHHHHhccCcEeeccCc---------H------
Confidence 44555555555555544421 22321 23333 458999999999999997 999999 2
Q ss_pred ccCChHHHHHHHcCCCcCCCCCcceEEEEEEeeecCCeeEEEEEEecCChhhHHHHHHH--------HHHHcCCceEece
Q psy4559 193 RLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYD--------LGTKLRSAAICTS 264 (336)
Q Consensus 193 Kv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~~~p~~~l~V~CSkG~~TYIRSL~~D--------IG~~LG~~Ahm~~ 264 (336)
|... | +....|.=+||++++..+++..|.+++.|..| |||+.|||. ||..||+.|+|.+
T Consensus 346 -----RV~h--R----R~~~~R~R~I~~i~~~~i~~~~~~l~i~~eaG--tYIKElv~GD~GRT~Psl~~lLg~~a~~~e 412 (422)
T PRK14554 346 -----RVKH--R----RADLVRVRKVYDISGELIDDKHFELRIKCEGG--LYIKELISGDEGRTTPSLSELLGTPAIVTE 412 (422)
T ss_pred -----hhhh--h----ccccceeeEEEEEEEEEEcCcEEEEEEEEecC--CEEEEEEeCCCCcccccHHHHhCCCceEEE
Confidence 1111 1 22234666899999999988899999999999 999999996 9999999999999
Q ss_pred eEEeeE
Q psy4559 265 IQCIRF 270 (336)
Q Consensus 265 LrRtr~ 270 (336)
|=-..+
T Consensus 413 LDV~~V 418 (422)
T PRK14554 413 LDVLDV 418 (422)
T ss_pred eeEEEE
Confidence 865544
No 57
>KOG2529|consensus
Probab=97.89 E-value=1.2e-05 Score=80.96 Aligned_cols=150 Identities=14% Similarity=0.120 Sum_probs=107.1
Q ss_pred hhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCC--Ccce----EEEEEEeeec--CC
Q psy4559 158 GNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALL--KEPV----VYGLKCVHFK--PP 229 (336)
Q Consensus 158 e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~--R~v~----Iy~i~ll~~~--~p 229 (336)
....++-..|.|...+.|+ + +++.|+.+++...+++.|+.-++.. +.+. +|+.++++++ .+
T Consensus 123 ~s~~s~gk~yvg~~~lt~~---------v--~~~~k~~~~~e~l~g~l~~~~pl~~~~kr~~~v~~~y~s~~ie~d~~~~ 191 (395)
T KOG2529|consen 123 KSQQSAGKEYVGIGKLTPE---------V--EDALKLHQKLEHLYGALFQRPPLISAVKRVLRVRTLYESKIIEYDRDYP 191 (395)
T ss_pred cchhccCcEEEEEEecCcc---------h--hhhhhhccchhhhhhhhccCCchhhhccceeEeechhhhhcccccccch
Confidence 3345666778999999987 5 7999999999888899998655432 2222 4555666664 47
Q ss_pred eeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCcc-ccccccCC-hhHHHHHhh---hhhhhhcccC
Q psy4559 230 DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEH-SLLRKHWR-VQHVIENIA---HNETLVDKMD 304 (336)
Q Consensus 230 ~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~-Al~le~~~-l~~I~~~i~---~~~~lL~~~p 304 (336)
...|-+.|-.| ||+|++|..+|.-||++++|..++|.+.|.-+.++ .+++.+.- .+.+.++-. ...++..+.+
T Consensus 192 l~~f~~~~~~~--t~~rt~~~~lg~ll~~g~k~~E~~r~r~~~~~E~~~~~t~~d~~~~q~~~d~~~d~~~~r~~~~~le 269 (395)
T KOG2529|consen 192 LLRFGVSCEAG--TYKRTMCVHLGLLLGFGGKMQELRRVRSGICSEEDDMLTEHDEQDAQFEYDTERDESYLRRVKKPLE 269 (395)
T ss_pred hcccccccccc--chHHHHHHhhhhHhhhcchhhhhhhcccccccccccccccccchhhhhhhccccCcceeeeeeeccc
Confidence 78999999999 99999999999999999999999999999988876 76655532 222222211 1234444555
Q ss_pred CcCCCCceeeeCCCCC
Q psy4559 305 PMRPQLQSVNMTDSDS 320 (336)
Q Consensus 305 ~~~~~l~~v~~~~~~~ 320 (336)
+...++..+.+-|+.-
T Consensus 270 s~l~~~~~vv~kd~~v 285 (395)
T KOG2529|consen 270 SLLTGYKRVVVKDSTV 285 (395)
T ss_pred cccccceeeecccchh
Confidence 5555566666655543
No 58
>KOG2529|consensus
Probab=95.42 E-value=0.0018 Score=65.55 Aligned_cols=192 Identities=8% Similarity=-0.112 Sum_probs=125.5
Q ss_pred EeeecCCCCccccccccccccCCcchHHHHHhhhhcCC-------chhhhhhhccccCchhhhhhhhCCceeeCCCCCce
Q psy4559 69 LVSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNN-------CLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPV 141 (336)
Q Consensus 69 ~~~~lDp~~~gvlP~~~~~~v~~~gkatrvl~~i~g~~-------~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~ 141 (336)
-.+-|||.|+|.+-+ |++++||.+.-.++.. ++..+...+.++.....-.+.++|...|..+..+.
T Consensus 99 h~gTlDP~vtg~l~v-------~~~~~tr~~~s~~s~gk~yvg~~~lt~~v~~~~k~~~~~e~l~g~l~~~~pl~~~~kr 171 (395)
T KOG2529|consen 99 HSGTLDPEVTGCLIV-------CIDRATRLLKSQQSAGKEYVGIGKLTPEVEDALKLHQKLEHLYGALFQRPPLISAVKR 171 (395)
T ss_pred CCCCCCccccceEEE-------EeecccccccchhccCcEEEEEEecCcchhhhhhhccchhhhhhhhccCCchhhhccc
Confidence 467899999999999 9999999998887654 23333334445544333335677776666555555
Q ss_pred eecceeeeeCCCCCchhhhhhhccccccceeeecCccchhhhhhhccccccccCChHHHHH--------HHcCCCcCCCC
Q psy4559 142 VYGLKCVHFKPPDFTIGNLYSALLPWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDI--------ARQGPIRPALL 213 (336)
Q Consensus 142 I~gielI~~~~~~~t~e~i~~~L~~f~G~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeL--------AR~G~~ve~~~ 213 (336)
+.-++.+.+. .+...+.+..|..|.+..++.++ + ++.-...|..||=. +|.|..+|..-
T Consensus 172 ~~~v~~~y~s--~~ie~d~~~~l~~f~~~~~~~t~---------~--rt~~~~lg~ll~~g~k~~E~~r~r~~~~~E~~~ 238 (395)
T KOG2529|consen 172 VLRVRTLYES--KIIEYDRDYPLLRFGVSCEAGTY---------K--RTMCVHLGLLLGFGGKMQELRRVRSGICSEEDD 238 (395)
T ss_pred eeEeechhhh--hcccccccchhccccccccccch---------H--HHHHHhhhhHhhhcchhhhhhhccccccccccc
Confidence 5544444333 35667788889999999999887 5 56666666655433 44444444322
Q ss_pred CcceEEEEEEeee-----cCC--eeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCcccccccc
Q psy4559 214 KEPVVYGLKCVHF-----KPP--DFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKH 283 (336)
Q Consensus 214 R~v~Iy~i~ll~~-----~~p--~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~ 283 (336)
.++.++..-..| ..+ ...+...++++ +|.++.+-+.+...+...++..|-++..+.|..+-....+.
T Consensus 239 -~~t~~d~~~~q~~~d~~~d~~~~r~~~~~les~--l~~~~~vv~kd~~v~~~cyg~k~~v~~~~r~~~~i~~~~e~ 312 (395)
T KOG2529|consen 239 -MLTEHDEQDAQFEYDTERDESYLRRVKKPLESL--LTGYKRVVVKDSTVNAPCYGAKLLVPGLLRYSDDIDGPFEV 312 (395)
T ss_pred -ccccccchhhhhhhccccCcceeeeeeeccccc--cccceeeecccchhcCccccceeeeccccccCccccCceeE
Confidence 222222221111 122 45667778888 88888888999999999999999999999988664444443
No 59
>COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=94.60 E-value=0.056 Score=54.86 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=73.6
Q ss_pred eeeCCCCCchhhhhhhcccccc-ceeeecCccchhhhhhhccccccccCChHHHHHHHcCCCcCCCCCcceEEEEEEeee
Q psy4559 148 VHFKPPDFTIGNLYSALLPWQE-AVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHF 226 (336)
Q Consensus 148 I~~~~~~~t~e~i~~~L~~f~G-~i~QvPP~~~k~I~~imp~ySAvKv~GkraYeLAR~G~~ve~~~R~v~Iy~i~ll~~ 226 (336)
+.++. +++.++++.++....| .|.|-+| ..+. +| | ....|.=.||++++...
T Consensus 288 V~~~~-~v~~e~l~~~~~~L~g~~I~QrTP------~RV~----------hr-----R-----adlvR~R~V~~l~~~~~ 340 (398)
T COG1258 288 VYSDR-PVSDEKLEEVLGSLEGKTIRQRTP------RRVL----------HR-----R-----ADLVRIRRVYELSLDLI 340 (398)
T ss_pred EEECC-CcCHHHHHHHHhhccCcEEeecCh------HHHh----------hh-----h-----cccceEEEEEEeeeeec
Confidence 33443 5899999999999999 6999988 1111 11 2 22345557899998888
Q ss_pred cCCeeEEEEEEecCChhhHHHHHH--------HHHHHcCCceEeceeEEeeEe
Q psy4559 227 KPPDFTIEVHCIGEYEEFLIRLIY--------DLGTKLRSAAICTSIQCIRFA 271 (336)
Q Consensus 227 ~~p~~~l~V~CSkG~~TYIRSL~~--------DIG~~LG~~Ahm~~LrRtr~G 271 (336)
+.+.+.+.+.|..| +||..|++ -++..||..|-|..|==.++.
T Consensus 341 ~~~~~~~~i~~egG--lYIKElIsGD~GRT~PSlse~lg~~a~~~eLDVl~V~ 391 (398)
T COG1258 341 DDRHAELEIEAEGG--LYIKELISGDGGRTRPSLSEILGVEAVVEELDVLKVE 391 (398)
T ss_pred cCceEEEEEEeccc--ceeeeeecCCCCCcCcchHHHhCCcceEEEeeeEEec
Confidence 89999999999999 99999997 477899999999988766554
No 60
>cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like. This group consists of eukaryotic and archeal pseudouridine synthases similar to human dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila melanogaster Mfl (minifly protein). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactor is required. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. D. melanogaster mfl hosts in its fourth intron, a box H/AC snoRNA gene. In addition dyskerin is likely to have a structural role in the telomerase complex. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Mutations in Drosophila Mfl r
Probab=86.07 E-value=1 Score=41.26 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=50.1
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCC--CCCchhhhhhhccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKP--PDFTIGNLYSALLPWQ 168 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~--~~~t~e~i~~~L~~f~ 168 (336)
..+++++++..|.|...|.+|+||+.+. .+ |+..|++++++++.+ +.++.+
T Consensus 77 t~e~l~~~l~~f~G~i~Q~pP~~SA~K~------------~~-----R~v~I~~i~l~~~~~~~~~~~~~---------- 129 (182)
T cd02572 77 DEEKVRRVLEEFTGAIFQRPPLISAVKR------------QL-----RVRTIYESKLLEYDGERRLVLFR---------- 129 (182)
T ss_pred CHHHHHHHHHHCCCcEEeeCCHhheecC------------Cc-----eEEEEEEEEEEEEcCCCcEEEEE----------
Confidence 6789999999999998899999999982 22 345799999999876 444443
Q ss_pred cceeeecCccchhhhhhh
Q psy4559 169 EAVLKITDNNCLFVCLFV 186 (336)
Q Consensus 169 G~i~QvPP~~~k~I~~im 186 (336)
+.. ..++||++++
T Consensus 130 --v~c---s~GTYIRsL~ 142 (182)
T cd02572 130 --VSC---EAGTYIRTLC 142 (182)
T ss_pred --EEE---CCCcCHHHHH
Confidence 444 3789999998
No 61
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed
Probab=84.10 E-value=0.63 Score=45.56 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=51.7
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA 170 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~ 170 (336)
..+++++++..|+|...|.+|+||+++. . .|+..|++++++++..+.++.+
T Consensus 97 ~~~~~~~~l~~~~g~i~Q~pP~~SA~k~------------~-----~r~v~I~~i~~~~~~~~~~~~~------------ 147 (300)
T PRK04270 97 PEEDIRKVFKEFTGEIYQKPPLKSAVKR------------R-----LRVRTIYELEILEIDGRDVLFR------------ 147 (300)
T ss_pred CHHHHHHHHHHCCCcEEeECCHHHhccC------------C-----ceEEEEEEEEEEEecCCEEEEE------------
Confidence 6789999999999999999999999982 2 2345899999999876544443
Q ss_pred eeeecCccchhhhhhhcc
Q psy4559 171 VLKITDNNCLFVCLFVHR 188 (336)
Q Consensus 171 i~QvPP~~~k~I~~imp~ 188 (336)
+..- .++||+++..+
T Consensus 148 v~cs---~GtYIRsl~~d 162 (300)
T PRK04270 148 VRCE---SGTYIRKLCHD 162 (300)
T ss_pred EEEC---CceEHHHHHHH
Confidence 5553 78999999843
No 62
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=81.03 E-value=0.9 Score=44.26 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=51.7
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA 170 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~ 170 (336)
..+.+..+++.|+|++.|.||+||+++ ...+. |+..|+.+.++++..+.++.+
T Consensus 91 ~~e~i~~~l~~F~G~I~Q~PP~~SAvK-------------~~v~~--R~V~i~~l~~~~~~~~~~~~~------------ 143 (271)
T COG0130 91 SEEEVRAALEAFTGEIYQIPPMFSAVK-------------REVER--RKITIYDLLELDFDRNLVTLR------------ 143 (271)
T ss_pred CHHHHHHHHHhcceeeEecCCchhhcc-------------ceEee--EEEEEEEeeeccCCCceEEEE------------
Confidence 688999999999999999999999999 21222 667788887777776544443
Q ss_pred eeeecCccchhhhhhhcc
Q psy4559 171 VLKITDNNCLFVCLFVHR 188 (336)
Q Consensus 171 i~QvPP~~~k~I~~imp~ 188 (336)
+.+- .++|||+...+
T Consensus 144 v~Cs---kGTYIRtL~~D 158 (271)
T COG0130 144 VECS---KGTYIRTLARD 158 (271)
T ss_pred EEEe---cCcCHHHHHHH
Confidence 5554 78999998754
No 63
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative. This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both.
Probab=73.82 E-value=2.2 Score=42.44 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=49.9
Q ss_pred CcchHHHHHhhhhcCCchhhhhhhccccCchhhhhhhhCCceeeCCCCCceeecceeeeeCCCCCchhhhhhhccccccc
Q psy4559 91 SIKPLQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEA 170 (336)
Q Consensus 91 ~~gkatrvl~~i~g~~~~~~~~~sgi~tDt~daYe~Ar~G~~~~t~dreg~I~gielI~~~~~~~t~e~i~~~L~~f~G~ 170 (336)
..+.+++++..|.|...|.+|+||+++.. .|...|+.++++++..+.++.+
T Consensus 109 ~~~~l~~~l~~f~g~i~Q~pP~~SA~k~~-----------------~r~v~I~~~~l~~~~~~~~~~~------------ 159 (322)
T TIGR00425 109 KEEDILRVLKEFTGRIFQRPPLKSAVKRQ-----------------LRVRTIYESELLEKDGKDVLFR------------ 159 (322)
T ss_pred CHHHHHHHHHHcCCcEEeeCChheEEecc-----------------CeEEEEEEEEEEEecCCeEEEE------------
Confidence 57789999999999999999999999832 2456799999998876543333
Q ss_pred eeeecCccchhhhhhh
Q psy4559 171 VLKITDNNCLFVCLFV 186 (336)
Q Consensus 171 i~QvPP~~~k~I~~im 186 (336)
+.+- .++||+++.
T Consensus 160 v~cs---kGTYIRsL~ 172 (322)
T TIGR00425 160 VSCE---AGTYIRKLC 172 (322)
T ss_pred EEeC---CCcChHHHH
Confidence 5554 789999998
No 64
>cd01291 PseudoU_synth PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases. Some psi sites such as psi55,13,38 and 39 in tRNA are highly conserved, being in the same position in eubacteria, archeabacteria and eukaryotes. Other psi sites occur in a more restricted fashion, for example psi2604in 23S RNA made by E.coli RluF has only been detected in E.coli. Human dyskerin with the help of guide RNAs makes the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Missense mutation in human PUS1 causes mitochondrial myopathy and sideroblastic anemia (MLASA).
Probab=66.83 E-value=8.7 Score=30.20 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=24.8
Q ss_pred EEEEEEeeecC--CeeEEEEEEecCChhhHHHHHHHHH
Q psy4559 218 VYGLKCVHFKP--PDFTIEVHCIGEYEEFLIRLIYDLG 253 (336)
Q Consensus 218 Iy~i~ll~~~~--p~~~l~V~CSkG~~TYIRSL~~DIG 253 (336)
+...++..... ..+.+++++.+| .|+|++++++|
T Consensus 52 ~~~~~~~~~~~~~~~~~l~f~l~~~--~yat~~l~el~ 87 (87)
T cd01291 52 VKPLNLKWPEERKRALVLEFTLPRG--SYATMLLRELG 87 (87)
T ss_pred EecceeEEcccccceEEEEEEcCCc--chHHHHHHHhC
Confidence 33444444444 568888888888 99999999885
No 65
>PRK10700 23S rRNA pseudouridylate synthase B; Provisional
Probab=64.42 E-value=27 Score=33.97 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=49.2
Q ss_pred HHcCCCcCCCCCcceEEEEEEeeecCCeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccc
Q psy4559 203 ARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRK 282 (336)
Q Consensus 203 AR~G~~ve~~~R~v~Iy~i~ll~~~~p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le 282 (336)
-++|+.++-.+ .....++....+.+...++|+...|---=||-++.-+| -.+..|.|+++|+|.|++.|..-
T Consensus 156 l~~Gv~l~~~~--~~~~~v~~~~~~~~~s~l~v~L~EGk~hQIRrm~~~lG------~~V~~L~Ri~iG~l~L~~~L~~G 227 (289)
T PRK10700 156 LSRGVQLEDGP--AAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVG------VQVSRLIRVRYGDIPLPKGLPRG 227 (289)
T ss_pred HHcCCEeCCce--eeeEEEEeccCCCCceEEEEEEeCCccHHHHHHHHHcC------CEEeEEEEEEEeeeEcCCCCCCC
Confidence 36777664222 22333443322223345777777773344777766544 45889999999999997778888
Q ss_pred cC---ChhHH
Q psy4559 283 HW---RVQHV 289 (336)
Q Consensus 283 ~~---~l~~I 289 (336)
+| +.+++
T Consensus 228 ~~R~L~~~E~ 237 (289)
T PRK10700 228 GWTELDLAQT 237 (289)
T ss_pred ceEECCHHHH
Confidence 87 34554
No 66
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
Probab=57.74 E-value=91 Score=30.19 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=52.9
Q ss_pred hHHHHHHHcCCCcCCC-CCcceEEEEEEeeecC-CeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEeccc
Q psy4559 197 QEAYDIARQGPIRPAL-LKEPVVYGLKCVHFKP-PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFG 274 (336)
Q Consensus 197 kraYeLAR~G~~ve~~-~R~v~Iy~i~ll~~~~-p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~ 274 (336)
...-+.-++|+..+-. ..+..+-.+... .. +...++|+..-|--.=||-++.-+| -.+..|+|+++|+|+
T Consensus 148 ~~~l~~l~~Gv~l~d~~~~~~~~~~l~~~--~~~~~s~~~itl~EGrnrQVRRm~~a~G------~~V~~L~R~~iG~l~ 219 (248)
T COG1187 148 EEDLEKLRKGVTLDDGETKPAKPASLEKE--PGKNNSWLRITLTEGRNRQVRRMFEAVG------LEVLRLKRIRIGPLS 219 (248)
T ss_pred HHHHHHHhCCcEecCcccccceeEEEEec--CCCCceEEEEEEeCCcCHHHHHHHHHcC------CEEeEEEEEEEeeeE
Confidence 4555667888887643 333333444322 22 6778888888883344666665443 468899999999999
Q ss_pred Ccc-ccccccC
Q psy4559 275 LEH-SLLRKHW 284 (336)
Q Consensus 275 le~-Al~le~~ 284 (336)
|++ .+..-+|
T Consensus 220 L~~L~l~~G~~ 230 (248)
T COG1187 220 LGDLPLPPGEW 230 (248)
T ss_pred cCCCCCCCcee
Confidence 988 6655666
No 67
>PHA01516 hypothetical protein
Probab=54.47 E-value=5.3 Score=32.94 Aligned_cols=11 Identities=55% Similarity=1.026 Sum_probs=8.3
Q ss_pred EEeeecccccc
Q psy4559 6 LRVWHLPISMG 16 (336)
Q Consensus 6 ~~~~~~~~~~~ 16 (336)
|||||+|--.|
T Consensus 3 lrvwhipqvp~ 13 (98)
T PHA01516 3 LRVWHIPQVPM 13 (98)
T ss_pred ceeeecCCCCC
Confidence 79999986544
No 68
>PRK10475 23S rRNA pseudouridine synthase F; Provisional
Probab=45.88 E-value=94 Score=30.43 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=38.3
Q ss_pred eEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccC---ChhHHH
Q psy4559 231 FTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHW---RVQHVI 290 (336)
Q Consensus 231 ~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~---~l~~I~ 290 (336)
..++|+...|--.=||-++.-+| -.+..|.|+++|++.|+ .|..-+| +.+++.
T Consensus 175 ~~~~i~l~eGk~rqIRrm~~~~G------~~V~~L~R~~ig~l~L~-~L~~G~~r~Lt~~E~~ 230 (290)
T PRK10475 175 FVFRITLVQGLNRQIRRMCEHFG------YEVTKLERTRIMNVSLS-GIPLGEWRDLTDDELI 230 (290)
T ss_pred cEEEEEEECCcCHHHHHHHHHcC------CEEeEEEEEEECCEEcC-CCCCCCeEECCHHHHH
Confidence 35777777773355777776544 57899999999999998 6888888 445553
No 69
>cd02556 PseudoU_synth_RluB PseudoU_synth_RluB: Pseudouridine synthase, Escherichia coli RluB like. This group is comprised of bacterial and eukaryotic proteins similar to E. coli RluB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluB makes psi2605 in 23S RNA. psi2605 has been detected in eubacteria but, not in eukarya and archea despite the presence of a precursor U at that site.
Probab=41.82 E-value=1.2e+02 Score=26.74 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=39.2
Q ss_pred EEEEeeecCCeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccC
Q psy4559 220 GLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHW 284 (336)
Q Consensus 220 ~i~ll~~~~p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~ 284 (336)
.++++....+.-.++|+.-.|---=||-.+..+| .-+..|+|+++|++.++..+..-+|
T Consensus 104 ~~~~~~~~~~~sll~v~l~tGR~HQIR~~~a~~G------~pV~~L~R~~ig~~~l~~~L~~G~~ 162 (167)
T cd02556 104 SIQLEGGEGKNSWYRVTLREGRNREVRRLWEAFG------LQVSRLIRIRYGPIFLPGNLKRGQW 162 (167)
T ss_pred EEEEEecCCCcEEEEEEEEeCCCHHHHHHHHHcC------CeEeEEEEEEECCcccCCCCCCCce
Confidence 4444433333344666666774466787776654 4678999999999998766766665
No 70
>TIGR00093 pseudouridine synthase. This model identifies panels of pseudouridine synthase enzymes that RNA modifications involved in maturing the protein translation apparatus. Counts per genome vary: two in Staphylococcus aureus, three in Pseudomonas putida, four in E. coli, etc.
Probab=29.62 E-value=1.9e+02 Score=24.35 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=39.6
Q ss_pred EEEeeecCCeeEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCC
Q psy4559 221 LKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWR 285 (336)
Q Consensus 221 i~ll~~~~p~~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~ 285 (336)
++++......-.++++...|----||..+..+| --+..+.|+++|+|.++ .+..-+|.
T Consensus 67 ~~~l~~~~~~~~l~~~l~tGR~HQIR~~~~~lG------~pI~g~~R~~~g~~~l~-~L~~G~~r 124 (128)
T TIGR00093 67 LEVITEPGFPTWLRITLSEGRNRQVRRMFAAVG------FPVLRLHRVRIGDVSLN-GLPPGEWR 124 (128)
T ss_pred EEEEccCCCceEEEEEEeCCCCHHHHHHHHHcC------CeEeEEEEEEECCEEcC-CCCCCCeE
Confidence 344433222335777777775567888877665 35789999999999996 57666663
No 71
>cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like. This group is comprised of bacterial proteins similar to Escherichia coli RluF. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluF makes psi2604 in 23S RNA. psi2604 has only been detected in E. coli. It is absent from other eubacteria despite a precursor U at that site and from eukarya and archea which lack a precursor U at that site.
Probab=24.43 E-value=1.4e+02 Score=26.77 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=33.3
Q ss_pred EEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccC
Q psy4559 232 TIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHW 284 (336)
Q Consensus 232 ~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~ 284 (336)
.++|+...|---=||-++..+| -.+..|+|+++|++.++ .+..-+|
T Consensus 109 ~l~i~l~eGr~~qIRrm~~~~G------~~V~~L~Ri~iG~~~L~-~L~~G~~ 154 (164)
T cd02554 109 KFRIVLTQGLNRQIRRMCEALG------YRVTDLKRVRIMNIELG-DLAPGEW 154 (164)
T ss_pred EEEEEEECCcCHHHHHHHHHcC------CEEEEEEEEEECcEEcC-CCCCCCe
Confidence 3666666663355777776644 57889999999999997 4666666
No 72
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=23.84 E-value=3.2e+02 Score=21.68 Aligned_cols=61 Identities=20% Similarity=0.118 Sum_probs=38.1
Q ss_pred HHcCCCcCCCCCcceEEEEEEeeecCCeeEEEEEEec-CChhhHHHHHHHHHHHcCCceEec
Q psy4559 203 ARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIG-EYEEFLIRLIYDLGTKLRSAAICT 263 (336)
Q Consensus 203 AR~G~~ve~~~R~v~Iy~i~ll~~~~p~~~l~V~CSk-G~~TYIRSL~~DIG~~LG~~Ahm~ 263 (336)
|.+.-..+.+.+.+.|+.+.-++..+|.|.+-+.-.+ =.+.|.|=|.+-|-+++|-.+.-.
T Consensus 14 ~~~~~~pp~~g~~~Ki~Y~tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi 75 (80)
T PF14714_consen 14 ALERHPPPSKGKRLKIYYATQVGTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPI 75 (80)
T ss_dssp HHCCS--SETTCC--EEEEEEEETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--
T ss_pred HHHhCCCCCCCceeEEEEEEeCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeE
Confidence 3333333445688999999988889999988865422 245899999999999988665433
No 73
>PRK10839 16S rRNA pseudouridylate synthase A; Provisional
Probab=21.79 E-value=97 Score=28.58 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=34.4
Q ss_pred EEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCC
Q psy4559 232 TIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWR 285 (336)
Q Consensus 232 ~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~ 285 (336)
.+++.-.-|---=||-.+..+| -.+..|.|+++|+++++..+..-+|.
T Consensus 173 ll~~~l~tGRtHQIR~h~~~~G------~pi~gl~R~~~g~~~l~~~l~~g~~r 220 (232)
T PRK10839 173 QVRLTISEGRYHQVKRMFAAVG------NHVVELHRERIGAITLDADLAPGEYR 220 (232)
T ss_pred EEEEEEEcCcCHHHHHHHHHcC------CeEeeEEEEEEcCEecCCCCCCCcee
Confidence 4566666662255776666554 47889999999999997667777774
No 74
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=20.64 E-value=1.3e+02 Score=23.90 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHcCCceEece
Q psy4559 244 FLIRLIYDLGTKLRSAAICTS 264 (336)
Q Consensus 244 YIRSL~~DIG~~LG~~Ahm~~ 264 (336)
-+..|+.+|..++||++.+..
T Consensus 27 dlk~l~k~lKk~~~cggtv~~ 47 (77)
T cd00474 27 DLKKLAKELKKKCACGGTVKD 47 (77)
T ss_pred hHHHHHHHHHHHcCCCcEEec
Confidence 468999999999999999986
No 75
>cd02553 PseudoU_synth_RsuA PseudoU_synth_RsuA: Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.
Probab=20.61 E-value=1.7e+02 Score=25.77 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=37.3
Q ss_pred eEEEEEEecCChhhHHHHHHHHHHHcCCceEeceeEEeeEecccCccccccccCC
Q psy4559 231 FTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWR 285 (336)
Q Consensus 231 ~~l~V~CSkG~~TYIRSL~~DIG~~LG~~Ahm~~LrRtr~G~F~le~Al~le~~~ 285 (336)
..++++.-.|----||-.+..+| .-+..|.|+++|++++++.+..-+|.
T Consensus 112 sll~v~l~tGR~HQIR~hla~lG------~pI~~~~R~~~g~~~l~~~l~~g~~r 160 (167)
T cd02553 112 TTVRLTITEGKYHQVKRMFAAVG------NKVVALHRIRIGGLELDDDLAPGEWR 160 (167)
T ss_pred cEEEEEEEeCCCHHHHHHHHHcC------CeEEEEEEEEECCEecCCCCCCCceE
Confidence 44666666665577888777665 45789999999999999877777773
Done!