Your job contains 1 sequence.
>psy4559
MLTYVLRVWHLPISMGDRLGPHVEAISGSTFSKDSWLKSQRKDHKKINMTLLIKGWLSYM
KNKKNITVLVSLIDLFVPALLPWQETVTVPSIKPLQKVLKIIDNNNCLFVHRQAGVRLNS
QEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTIGNLYSALLPWQEAVLKITDNNCL
FVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGE
YEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLV
DKMDPMRPQLQSVNMTDSDSTDGSNVSDGNRTVLET
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4559
(336 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0033060 - symbol:CG7849 species:7227 "Drosophila m... 264 7.8e-23 1
ZFIN|ZDB-GENE-040704-41 - symbol:trub2 "TruB pseudouridin... 257 4.3e-22 1
MGI|MGI:2442186 - symbol:Trub2 "TruB pseudouridine (psi) ... 225 2.6e-17 1
RGD|1359394 - symbol:Trub2 "TruB pseudouridine (psi) synt... 216 3.7e-16 1
UNIPROTKB|Q5XFW2 - symbol:Trub2 "Probable tRNA pseudourid... 216 3.7e-16 1
UNIPROTKB|F1NEP1 - symbol:TRUB2 "Uncharacterized protein"... 213 8.1e-16 1
UNIPROTKB|B7Z7G5 - symbol:TRUB2 "cDNA FLJ52131, highly si... 200 2.7e-15 1
UNIPROTKB|F1RR98 - symbol:TRUB2 "Uncharacterized protein"... 205 1.3e-14 1
UNIPROTKB|E2RSQ5 - symbol:TRUB2 "Uncharacterized protein"... 202 3.0e-14 1
UNIPROTKB|J9P6Q3 - symbol:TRUB2 "Uncharacterized protein"... 202 4.1e-14 1
UNIPROTKB|O95900 - symbol:TRUB2 "Probable tRNA pseudourid... 200 5.3e-14 1
UNIPROTKB|G3N1K1 - symbol:TRUB2 "Uncharacterized protein"... 199 7.3e-14 1
WB|WBGene00021544 - symbol:Y43B11AR.3 species:6239 "Caeno... 188 2.0e-12 1
UNIPROTKB|I3LSD7 - symbol:I3LSD7 "Uncharacterized protein... 126 1.5e-05 1
UNIPROTKB|E2QZY6 - symbol:TRUB1 "Uncharacterized protein"... 123 6.3e-05 1
UNIPROTKB|Q8WWH5 - symbol:TRUB1 "Probable tRNA pseudourid... 120 0.00014 1
ZFIN|ZDB-GENE-080723-73 - symbol:trub1 "TruB pseudouridin... 116 0.00027 1
UNIPROTKB|E1BEB7 - symbol:LOC530353 "Uncharacterized prot... 115 0.00051 1
>FB|FBgn0033060 [details] [associations]
symbol:CG7849 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002501 InterPro:IPR020103 Pfam:PF01509
EMBL:AE013599 GO:GO:0003723 GO:GO:0006396 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00530000063611
OMA:HGCRLLT FlyBase:FBgn0033060 NextBio:793910 EMBL:BT024356
RefSeq:NP_610201.1 UniGene:Dm.23898 SMR:Q29QN4
EnsemblMetazoa:FBtr0085977 GeneID:35537 KEGG:dme:Dmel_CG7849
UCSC:CG7849-RB InParanoid:Q29QN4 GenomeRNAi:35537 Uniprot:Q29QN4
Length = 317
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 50/129 (38%), Positives = 81/129 (62%)
Query: 191 GVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIY 250
GV L +QEAY++A +G +RPA +PVVYG+K +HF P FT+E+H I E +E+L L++
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTLELHAINETQEYLATLVH 249
Query: 251 DLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQL 310
D+ LR+ A C+ ++C+R A F + SLLR W + +I+N+ ++ + P +
Sbjct: 250 DMALDLRTVAHCSQLRCVRHAHFDVTDSLLRHAWHLPGIIKNLRQQRDIL-RAHPQLLRQ 308
Query: 311 QSVNMTDSD 319
Q V + +D
Sbjct: 309 QRVELRATD 317
Score = 133 (51.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 115 GVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPDFTI 157
GV L +QEAY++AC+G +RPA +PVVYG+K +HF P FT+
Sbjct: 190 GVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTL 232
>ZFIN|ZDB-GENE-040704-41 [details] [associations]
symbol:trub2 "TruB pseudouridine (psi) synthase
homolog 2 (E. coli)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] InterPro:IPR002501
InterPro:IPR020103 Pfam:PF01509 ZFIN:ZDB-GENE-040704-41
GO:GO:0003723 GO:GO:0006396 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL732598 GeneTree:ENSGT00530000063611
HOGENOM:HOG000231821 HOVERGEN:HBG053337 IPI:IPI00488394
Ensembl:ENSDART00000134293 Bgee:F6P6I4 Uniprot:F6P6I4
Length = 352
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 55/148 (37%), Positives = 91/148 (61%)
Query: 192 VRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYD 251
V L +QEAY++A +G + P P++ GL+C+ F PP FT+EV C+ E +++L +LI++
Sbjct: 186 VELQTQEAYELAARGLLYPDGKSPPILTGLRCIKFNPPHFTLEVRCVNETQKYLRKLIHE 245
Query: 252 LGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQLQ 311
+G +LR++A+CT ++ R F +E++L R+HW V++ I H K+ +Q
Sbjct: 246 VGLELRASAVCTKVRRTRDGPFKVENALTRQHWTADSVLQAINHFRKTARKIRKSGMYMQ 305
Query: 312 S-VNMT-DSDS---TDGSNVSDGNRTVL 334
S V MT D+D+ T ++S G R VL
Sbjct: 306 SNVRMTLDADTREQTQSEHMS-GVRDVL 332
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPVVYGLKCVHFKPPD 154
L++VL ++ +N + + V L +QEAY++A +G + P P++ GL+C+ F PP
Sbjct: 165 LERVLAMLQGSNQKALITYSQVELQTQEAYELAARGLLYPDGKSPPILTGLRCIKFNPPH 224
Query: 155 FTI 157
FT+
Sbjct: 225 FTL 227
>MGI|MGI:2442186 [details] [associations]
symbol:Trub2 "TruB pseudouridine (psi) synthase homolog 2
(E. coli)" species:10090 "Mus musculus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] InterPro:IPR002501 InterPro:IPR020103 Pfam:PF01509
MGI:MGI:2442186 GO:GO:0003723 GO:GO:0008033 eggNOG:COG0130
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063611 CTD:26995 HOGENOM:HOG000231821
HOVERGEN:HBG053337 OMA:HGCRLLT OrthoDB:EOG4PK285 EMBL:AK090004
EMBL:AK167294 EMBL:BC015285 EMBL:BC024075 IPI:IPI00128124
RefSeq:NP_663495.3 UniGene:Mm.245739 ProteinModelPortal:Q91WG3
SMR:Q91WG3 STRING:Q91WG3 PhosphoSite:Q91WG3 PRIDE:Q91WG3
Ensembl:ENSMUST00000048044 GeneID:227682 KEGG:mmu:227682
InParanoid:Q91WG3 NextBio:378740 Bgee:Q91WG3 Genevestigator:Q91WG3
GermOnline:ENSMUSG00000039826 Uniprot:Q91WG3
Length = 331
Score = 225 (84.3 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 41/101 (40%), Positives = 72/101 (71%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L SQEAY++A QG IRP + K P+ + G++C+HF PP+F +EV C+ E ++ L +L++++
Sbjct: 184 LKSQEAYEMAVQGVIRP-MNKSPMLISGIRCLHFAPPEFLLEVQCMHETQQQLRKLVHEI 242
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
G +L+++A+CT ++ R FGL+ +LLR W + ++ + I
Sbjct: 243 GLELKTSAVCTQVRRTRDGFFGLDDALLRTQWDLHNIQDAI 283
Score = 121 (47.7 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPV-VYGLKCVHFKPP 153
L ++L +I ++ + + + L SQEAY++A QG IRP + K P+ + G++C+HF PP
Sbjct: 161 LDRILAVIQGSHQKALVMYSNLDLKSQEAYEMAVQGVIRP-MNKSPMLISGIRCLHFAPP 219
Query: 154 DFTI 157
+F +
Sbjct: 220 EFLL 223
>RGD|1359394 [details] [associations]
symbol:Trub2 "TruB pseudouridine (psi) synthase homolog 2 (E.
coli)" species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002501 InterPro:IPR020103
Pfam:PF01509 RGD:1359394 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 CTD:26995 HOVERGEN:HBG053337
EMBL:BC084712 IPI:IPI00368540 RefSeq:NP_001014279.1
UniGene:Rn.105581 ProteinModelPortal:Q5XFW2 PRIDE:Q5XFW2
GeneID:366012 KEGG:rno:366012 eggNOG:KOG2559 NextBio:688511
Genevestigator:Q5XFW2 Uniprot:Q5XFW2
Length = 323
Score = 216 (81.1 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 42/100 (42%), Positives = 69/100 (69%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L SQEAY+ A QG IRP + K P+ + G++C+HF PP+F +EV C+ E ++ L RL++++
Sbjct: 184 LKSQEAYERAVQGVIRP-MNKSPMLIAGIRCLHFAPPEFLLEVQCMHETQQQLRRLVHEI 242
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIEN 292
G +L++ A+C ++ R FGL+ +LLR W + H I++
Sbjct: 243 GLELKTTAVCMQVRRTRDGFFGLDDALLRTQWDL-HSIQD 281
Score = 115 (45.5 bits), Expect = 0.00043, P = 0.00043
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPV-VYGLKCVHFKPP 153
L ++L +I ++ + + + L SQEAY+ A QG IRP + K P+ + G++C+HF PP
Sbjct: 161 LDRILAMIQGSHQKALVMYSNLDLKSQEAYERAVQGVIRP-MNKSPMLIAGIRCLHFAPP 219
Query: 154 DFTI 157
+F +
Sbjct: 220 EFLL 223
>UNIPROTKB|Q5XFW2 [details] [associations]
symbol:Trub2 "Probable tRNA pseudouridine synthase 2"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR002501 InterPro:IPR020103 Pfam:PF01509 RGD:1359394
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 CTD:26995 HOVERGEN:HBG053337 EMBL:BC084712
IPI:IPI00368540 RefSeq:NP_001014279.1 UniGene:Rn.105581
ProteinModelPortal:Q5XFW2 PRIDE:Q5XFW2 GeneID:366012
KEGG:rno:366012 eggNOG:KOG2559 NextBio:688511 Genevestigator:Q5XFW2
Uniprot:Q5XFW2
Length = 323
Score = 216 (81.1 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 42/100 (42%), Positives = 69/100 (69%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L SQEAY+ A QG IRP + K P+ + G++C+HF PP+F +EV C+ E ++ L RL++++
Sbjct: 184 LKSQEAYERAVQGVIRP-MNKSPMLIAGIRCLHFAPPEFLLEVQCMHETQQQLRRLVHEI 242
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIEN 292
G +L++ A+C ++ R FGL+ +LLR W + H I++
Sbjct: 243 GLELKTTAVCMQVRRTRDGFFGLDDALLRTQWDL-HSIQD 281
Score = 115 (45.5 bits), Expect = 0.00043, P = 0.00043
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 95 LQKVLKIIDNNNCLFVHRQAGVRLNSQEAYDVACQGPIRPALLKEPV-VYGLKCVHFKPP 153
L ++L +I ++ + + + L SQEAY+ A QG IRP + K P+ + G++C+HF PP
Sbjct: 161 LDRILAMIQGSHQKALVMYSNLDLKSQEAYERAVQGVIRP-MNKSPMLIAGIRCLHFAPP 219
Query: 154 DFTI 157
+F +
Sbjct: 220 EFLL 223
>UNIPROTKB|F1NEP1 [details] [associations]
symbol:TRUB2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002501 InterPro:IPR020103
Pfam:PF01509 GO:GO:0003723 GO:GO:0006396 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00530000063611
OMA:HGCRLLT EMBL:AADN02026637 IPI:IPI00601739
Ensembl:ENSGALT00000007872 Uniprot:F1NEP1
Length = 318
Score = 213 (80.0 bits), Expect = 8.1e-16, P = 8.1e-16
Identities = 35/106 (33%), Positives = 70/106 (66%)
Query: 184 LFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEE 243
L +H + + +QEAY++A +G IRP P++ ++C+ F P+F +E+HC+ E ++
Sbjct: 175 LLMHSH--IDMKTQEAYELAVKGLIRPMGKSPPIITAIRCLQFALPEFQLEIHCLHETQQ 232
Query: 244 FLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHV 289
+L ++++++G +L+S+A+CT ++ R F L+ +LLR W +Q +
Sbjct: 233 YLRKVVHEIGLELKSSAVCTQVRRTRDGVFTLDDALLRTQWNLQSI 278
>UNIPROTKB|B7Z7G5 [details] [associations]
symbol:TRUB2 "cDNA FLJ52131, highly similar to Homo sapiens
TruB pseudouridine (psi) synthase homolog 2 (TRUB2), mRNA"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002501 InterPro:IPR020103
Pfam:PF01509 GO:GO:0003723 GO:GO:0006396 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL359091 UniGene:Hs.632685
HGNC:HGNC:17170 HOVERGEN:HBG053337 ChiTaRS:TRUB2 EMBL:AK301986
IPI:IPI01009255 SMR:B7Z7G5 STRING:B7Z7G5 Ensembl:ENST00000546104
Uniprot:B7Z7G5
Length = 275
Score = 200 (75.5 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 37/101 (36%), Positives = 70/101 (69%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L +QEAY++A +G IRP + K P+ + G++C++F PP+F +EV C+ E ++ L +L++++
Sbjct: 128 LKTQEAYEMAVRGLIRP-MNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEI 186
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
G +L++ A+CT ++ R F L+ +LLR W + ++ + I
Sbjct: 187 GLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 227
>UNIPROTKB|F1RR98 [details] [associations]
symbol:TRUB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002501 InterPro:IPR020103 Pfam:PF01509
GO:GO:0003723 GO:GO:0006396 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00530000063611 OMA:HGCRLLT
EMBL:CU234126 Ensembl:ENSSSCT00000006207 Uniprot:F1RR98
Length = 331
Score = 205 (77.2 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 40/100 (40%), Positives = 69/100 (69%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L +QEAY++A G IRP + K P+ + G++C+ F PP+F +EV C+ E ++ L RL++++
Sbjct: 184 LQTQEAYEMAVSGVIRP-MNKSPMLITGIRCLQFAPPEFLLEVQCMHETQKQLRRLVHEI 242
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIEN 292
G +L+S+A+CT ++ R F L+ +LLR W + H I++
Sbjct: 243 GLELKSSAVCTQVRRTRDGFFTLDDALLRTQWDL-HSIQD 281
>UNIPROTKB|E2RSQ5 [details] [associations]
symbol:TRUB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR002501 InterPro:IPR020103
Pfam:PF01509 GO:GO:0003723 GO:GO:0006396 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00530000063611
EMBL:AAEX03006856 Ensembl:ENSCAFT00000031937 Uniprot:E2RSQ5
Length = 329
Score = 202 (76.2 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 40/100 (40%), Positives = 70/100 (70%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L +QEAYD+A +G IRP + K P+ V G++C++F PP+F +EV C+ E ++ L RL++++
Sbjct: 184 LQTQEAYDMAVRGLIRP-MDKSPMLVTGIRCLYFAPPEFLMEVQCMHETQKQLRRLVHEI 242
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIEN 292
G +L++ A+C+ ++ R F L+ +LLR W + H I++
Sbjct: 243 GLELKTTAVCSQVRRTRDGFFTLDDALLRTQWDL-HSIQD 281
>UNIPROTKB|J9P6Q3 [details] [associations]
symbol:TRUB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR002501 InterPro:IPR020103
Pfam:PF01509 GO:GO:0003723 GO:GO:0006396 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00530000063611
OMA:HGCRLLT EMBL:AAEX03006856 Ensembl:ENSCAFT00000043271
Uniprot:J9P6Q3
Length = 350
Score = 202 (76.2 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 40/100 (40%), Positives = 70/100 (70%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L +QEAYD+A +G IRP + K P+ V G++C++F PP+F +EV C+ E ++ L RL++++
Sbjct: 217 LQTQEAYDMAVRGLIRP-MDKSPMLVTGIRCLYFAPPEFLMEVQCMHETQKQLRRLVHEI 275
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIEN 292
G +L++ A+C+ ++ R F L+ +LLR W + H I++
Sbjct: 276 GLELKTTAVCSQVRRTRDGFFTLDDALLRTQWDL-HSIQD 314
>UNIPROTKB|O95900 [details] [associations]
symbol:TRUB2 "Probable tRNA pseudouridine synthase 2"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002501 InterPro:IPR020103
Pfam:PF01509 GO:GO:0003723 GO:GO:0008033 eggNOG:COG0130
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL359091
EMBL:AF131848 EMBL:AK001956 EMBL:BC001457 IPI:IPI00024151
RefSeq:NP_056494.1 UniGene:Hs.632685 ProteinModelPortal:O95900
SMR:O95900 IntAct:O95900 STRING:O95900 PhosphoSite:O95900
PRIDE:O95900 DNASU:26995 Ensembl:ENST00000372890 GeneID:26995
KEGG:hsa:26995 UCSC:uc004buq.1 CTD:26995 GeneCards:GC09M131071
HGNC:HGNC:17170 HPA:HPA021211 MIM:610727 neXtProt:NX_O95900
PharmGKB:PA38209 HOGENOM:HOG000231821 HOVERGEN:HBG053337
InParanoid:O95900 OMA:HGCRLLT OrthoDB:EOG4PK285 PhylomeDB:O95900
ChiTaRS:TRUB2 GenomeRNAi:26995 NextBio:49466 ArrayExpress:O95900
Bgee:O95900 CleanEx:HS_TRUB2 Genevestigator:O95900
GermOnline:ENSG00000167112 Uniprot:O95900
Length = 331
Score = 200 (75.5 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 37/101 (36%), Positives = 70/101 (69%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L +QEAY++A +G IRP + K P+ + G++C++F PP+F +EV C+ E ++ L +L++++
Sbjct: 184 LKTQEAYEMAVRGLIRP-MNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEI 242
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
G +L++ A+CT ++ R F L+ +LLR W + ++ + I
Sbjct: 243 GLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAI 283
>UNIPROTKB|G3N1K1 [details] [associations]
symbol:TRUB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002501 InterPro:IPR020103 Pfam:PF01509
GO:GO:0003723 GO:GO:0006396 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00530000063611 OMA:HGCRLLT
EMBL:DAAA02032174 Ensembl:ENSBTAT00000064542 Uniprot:G3N1K1
Length = 331
Score = 199 (75.1 bits), Expect = 7.3e-14, P = 7.3e-14
Identities = 38/101 (37%), Positives = 67/101 (66%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDL 252
L +QEAY++A G IRP + K P+ + G++C+ F PP+F +EV C+ E ++ L RL++++
Sbjct: 184 LQTQEAYEMAVSGVIRP-MNKSPMLITGIRCLQFAPPEFLLEVQCMHETQKQLRRLVHEI 242
Query: 253 GTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENI 293
G +L+S A+C ++ R F L+ +LLR W + ++ + I
Sbjct: 243 GLELKSTAVCAQVRRTRDGFFTLDDALLRTQWDLPNIQDAI 283
>WB|WBGene00021544 [details] [associations]
symbol:Y43B11AR.3 species:6239 "Caenorhabditis elegans"
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR002501
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0006396
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063611 EMBL:FO081794 eggNOG:NOG294995
RefSeq:NP_501102.3 ProteinModelPortal:Q9N3X3 SMR:Q9N3X3
DIP:DIP-25702N IntAct:Q9N3X3 MINT:MINT-1049511
EnsemblMetazoa:Y43B11AR.3 GeneID:177480 KEGG:cel:CELE_Y43B11AR.3
UCSC:Y43B11AR.3 CTD:177480 WormBase:Y43B11AR.3 InParanoid:Q9N3X3
OMA:YSIDLNW NextBio:897012 Uniprot:Q9N3X3
Length = 346
Score = 188 (71.2 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 42/142 (29%), Positives = 74/142 (52%)
Query: 188 RQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFLIR 247
R A V + S EA+++AR+G R L +VY + F+ P F++ C GE +E L +
Sbjct: 183 RHANVDMESSEAFELARRGVPRAQLPGSQIVYSIDLNWFRSPKFSVTTQCSGEDDEMLRQ 242
Query: 248 LIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVDKMDPMR 307
LI +G+ L + + +Q F FG +++LL K +Q++ NI N ++ + +
Sbjct: 243 LIEHIGSNLGTESTTIRLQRQNFGPFGSDNALLEKQINLQNIARNIILNRKIITS-ESVN 301
Query: 308 PQLQSVNMTDSDSTDGSNVSDG 329
++ S ++ DST + DG
Sbjct: 302 KKIVSESVEPEDSTKNREIFDG 323
>UNIPROTKB|I3LSD7 [details] [associations]
symbol:I3LSD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002501 InterPro:IPR020103 Pfam:PF01509
GO:GO:0003723 GO:GO:0006396 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00530000063611
Ensembl:ENSSSCT00000026069 OMA:FARKDSE Uniprot:I3LSD7
Length = 265
Score = 126 (49.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 194 LNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLI 249
L +QEAY++A G IRP + K P+ + G++C+ F PP+F +EV C+ E ++ L RL+
Sbjct: 136 LQTQEAYEMAVSGVIRP-MNKSPMLITGIRCLQFAPPEFLLEVQCMHETQKQLRRLV 191
>UNIPROTKB|E2QZY6 [details] [associations]
symbol:TRUB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K03177
PANTHER:PTHR13767 GeneTree:ENSGT00530000063611 CTD:142940
OMA:PFFTLDV TIGRFAMs:TIGR00431 EMBL:AAEX03015547 RefSeq:XP_544030.2
Ensembl:ENSCAFT00000018547 GeneID:486900 KEGG:cfa:486900
NextBio:20860605 Uniprot:E2QZY6
Length = 350
Score = 123 (48.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 30/113 (26%), Positives = 57/113 (50%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY L F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSLSLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGLE-HSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F LE H+L W + + +++ H +L+
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLL 311
>UNIPROTKB|Q8WWH5 [details] [associations]
symbol:TRUB1 "Probable tRNA pseudouridine synthase 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 EMBL:AF448144 EMBL:BX648709
EMBL:AK312805 EMBL:AK223567 EMBL:AL355340 EMBL:BC030601
IPI:IPI00103341 RefSeq:NP_631908.1 UniGene:Hs.21187 HSSP:Q9WZW0
ProteinModelPortal:Q8WWH5 SMR:Q8WWH5 STRING:Q8WWH5
PhosphoSite:Q8WWH5 DMDM:74751577 PaxDb:Q8WWH5 PeptideAtlas:Q8WWH5
PRIDE:Q8WWH5 DNASU:142940 Ensembl:ENST00000298746 GeneID:142940
KEGG:hsa:142940 UCSC:uc001lcd.3 CTD:142940 GeneCards:GC10P116687
HGNC:HGNC:16060 HPA:HPA037914 MIM:610726 neXtProt:NX_Q8WWH5
PharmGKB:PA38086 HOGENOM:HOG000063679 HOVERGEN:HBG094094
InParanoid:Q8WWH5 OMA:PFFTLDV OrthoDB:EOG4S4PGQ PhylomeDB:Q8WWH5
GenomeRNAi:142940 NextBio:84645 ArrayExpress:Q8WWH5 Bgee:Q8WWH5
CleanEx:HS_TRUB1 Genevestigator:Q8WWH5 GermOnline:ENSG00000165832
TIGRFAMs:TIGR00431 Uniprot:Q8WWH5
Length = 349
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY + F+PP FT++V C G + ++ L
Sbjct: 201 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGF--YIRSL 258
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGLE-HSLLRKHWRVQHVIENIAHNETL 299
+ D+G +L S A + + F LE H+L W + + +++ H +L
Sbjct: 259 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSL 310
>ZFIN|ZDB-GENE-080723-73 [details] [associations]
symbol:trub1 "TruB pseudouridine (psi) synthase
homolog 1 (E. coli)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 ZFIN:ZDB-GENE-080723-73
GO:GO:0003723 GO:GO:0006396 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
GeneTree:ENSGT00530000063611 CTD:142940 HOGENOM:HOG000063679
HOVERGEN:HBG094094 OMA:PFFTLDV OrthoDB:EOG4S4PGQ TIGRFAMs:TIGR00431
EMBL:CU464184 EMBL:BC162751 EMBL:BC163177 EMBL:BC163184
IPI:IPI00488585 RefSeq:NP_001122159.1 UniGene:Dr.76382
STRING:B3DHG0 Ensembl:ENSDART00000075889 GeneID:556642
KEGG:dre:556642 NextBio:20881584 Uniprot:B3DHG0
Length = 290
Score = 116 (45.9 bits), Expect = 0.00027, P = 0.00027
Identities = 38/125 (30%), Positives = 54/125 (43%)
Query: 202 IARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAA 260
+ +QG A PV VY L F PP FTI+V C G + ++ LI DLG L S A
Sbjct: 162 LLKQGQEVEAKPARPVTVYNLSLEDFSPPLFTIDVECGGGF--YVRSLIDDLGKALSSCA 219
Query: 261 ICTSIQCIRFAQFGLE-HSLLRKHWRVQHVIENIAHNETLVDKMDPMRPQLQSVNMTDSD 319
+ + QF LE H+L W + + + + D + N T S+
Sbjct: 220 HIKELTRTKQGQFTLEEHALKEDRWTLTDISQALQPCPVPADSEKNAKKAKSKHNTTTSE 279
Query: 320 STDGS 324
S G+
Sbjct: 280 SKGGA 284
>UNIPROTKB|E1BEB7 [details] [associations]
symbol:LOC530353 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K03177
PANTHER:PTHR13767 GeneTree:ENSGT00530000063611 OMA:PFFTLDV
TIGRFAMs:TIGR00431 EMBL:DAAA02059285 EMBL:DAAA02059286
IPI:IPI00716593 RefSeq:XP_003584154.1 RefSeq:XP_003587944.1
Ensembl:ENSBTAT00000017209 GeneID:530353 KEGG:bta:530353
Uniprot:E1BEB7
Length = 352
Score = 115 (45.5 bits), Expect = 0.00051, P = 0.00051
Identities = 29/113 (25%), Positives = 56/113 (49%)
Query: 190 AGVRLNSQEAYDIARQGPIRPALLKEPV-VYGLKCVHFKPPDFTIEVHCIGEYEEFLIRL 248
+ ++ + Q + ++G + A PV VY L F+PP FT++V C G + ++ L
Sbjct: 203 SALKKDGQRLSTLMKRGEVVEAKPARPVTVYSLSLQKFQPPFFTLDVECGGGF--YIRSL 260
Query: 249 IYDLGTKLRSAAICTSIQCIRFAQFGLE-HSLLRKHWRVQHVIENIAHNETLV 300
+ D+G +L S A + + F LE H+L W + + +++ +L+
Sbjct: 261 VSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLQRCSSLL 313
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.138 0.429 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 336 336 0.00092 116 3 11 22 0.49 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 615 (65 KB)
Total size of DFA: 244 KB (2130 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.98u 0.09s 29.07t Elapsed: 00:00:02
Total cpu time: 28.98u 0.09s 29.07t Elapsed: 00:00:02
Start: Thu Aug 15 15:59:32 2013 End: Thu Aug 15 15:59:34 2013