RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4559
         (336 letters)



>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 233

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 166 PWQEAVLKITDNNCLFVCLFVHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVH 225
              EA+    +     +       + +++  + AY +ARQG       +   +   + + 
Sbjct: 96  LTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLA 155

Query: 226 FKP----PDFTIEVHCIGEYEEFLIRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSL 279
            +      D  +E+ C      ++  L  DLG  L      T+++  R  +F L+ + 
Sbjct: 156 ARRRDQLIDIDVEIDCSSGT--YIRALARDLGDALGVGGHVTALRRTRVGRFELDQAR 211


>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB
           {Thermotoga maritima [TaxId: 2336]}
          Length = 228

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 2/116 (1%)

Query: 186 VHRQAGVRLNSQEAYDIARQGPIRPALLKEPVVYGLKCVHFKPPDFTIEVHCIGEYEEFL 245
               +  +   +  Y +AR+G I     K   ++ +  V+ +  D +  V        ++
Sbjct: 114 PPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGT--YI 171

Query: 246 IRLIYDLGTKLRSAAICTSIQCIRFAQFGLEHSLLRKHWRVQHVIENIAHNETLVD 301
             L  D+G KL   A    +         +E SL       + +   I   E  ++
Sbjct: 172 RSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAPEEIENRIIPLEKCLE 227


>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus
           cuniculus) [TaxId: 9986]}
          Length = 119

 Score = 25.1 bits (55), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 302 KMDPMRPQLQSVNMTDSDST 321
            +D   PQ+  VN+TD+DS 
Sbjct: 76  DIDLSAPQIGVVNVTDADSV 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,275,553
Number of extensions: 59536
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 6
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)