Query psy4562
Match_columns 112
No_of_seqs 161 out of 1127
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 20:13:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0676|consensus 99.9 6.2E-27 1.3E-31 188.4 4.7 90 19-109 257-372 (372)
2 PTZ00452 actin; Provisional 99.9 2.2E-26 4.9E-31 184.4 5.4 99 10-109 239-375 (375)
3 PTZ00466 actin-like protein; P 99.9 1.5E-25 3.3E-30 180.0 4.9 90 19-109 265-380 (380)
4 PTZ00281 actin; Provisional 99.9 1.6E-25 3.6E-30 179.1 4.6 99 10-109 240-376 (376)
5 PTZ00004 actin-2; Provisional 99.9 2.8E-24 6E-29 172.0 4.9 90 19-109 262-378 (378)
6 PTZ00280 Actin-related protein 99.9 1.3E-23 2.9E-28 169.6 4.0 91 19-110 278-411 (414)
7 PF00022 Actin: Actin; InterP 99.9 2.5E-23 5.5E-28 165.0 2.7 100 9-109 248-393 (393)
8 smart00268 ACTIN Actin. ACTIN 99.9 1.3E-22 2.8E-27 160.6 4.6 90 19-109 258-373 (373)
9 KOG0679|consensus 99.8 5.9E-21 1.3E-25 153.7 1.9 84 25-109 319-426 (426)
10 cd00012 ACTIN Actin; An ubiqui 99.8 7.3E-20 1.6E-24 145.0 3.7 88 19-107 256-371 (371)
11 KOG0680|consensus 99.8 2E-19 4.4E-24 142.9 4.8 90 19-109 284-399 (400)
12 COG5277 Actin and related prot 99.8 2.1E-19 4.5E-24 147.8 3.4 83 26-109 341-444 (444)
13 KOG0677|consensus 99.7 6.4E-18 1.4E-22 132.1 3.7 102 6-107 236-386 (389)
14 KOG0678|consensus 99.5 7.3E-15 1.6E-19 117.3 2.2 92 16-108 282-409 (415)
15 KOG0681|consensus 99.5 1E-14 2.3E-19 121.9 2.7 97 12-109 517-640 (645)
16 KOG0797|consensus 98.5 2.2E-08 4.8E-13 83.9 0.8 78 33-111 512-617 (618)
17 TIGR00904 mreB cell shape dete 94.4 0.0033 7.1E-08 49.4 -3.0 50 32-81 264-326 (333)
18 PRK13927 rod shape-determining 93.9 0.0043 9.2E-08 48.6 -3.3 50 32-81 261-323 (334)
19 PRK13930 rod shape-determining 93.7 0.0044 9.5E-08 48.4 -3.5 50 32-81 265-327 (335)
20 PRK13929 rod-share determining 93.4 0.0086 1.9E-07 47.4 -2.4 48 32-79 263-323 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 92.7 0.0065 1.4E-07 48.7 -4.0 50 32-81 258-320 (326)
22 PRK13928 rod shape-determining 91.9 0.015 3.2E-07 45.9 -2.8 50 32-81 260-322 (336)
23 TIGR02529 EutJ ethanolamine ut 81.1 0.56 1.2E-05 35.6 0.3 33 46-78 198-238 (239)
24 PRK15080 ethanolamine utilizat 77.5 0.42 9.2E-06 36.8 -1.3 33 46-78 225-265 (267)
25 COG1924 Activator of 2-hydroxy 77.1 0.62 1.3E-05 38.5 -0.5 42 40-81 340-389 (396)
26 CHL00094 dnaK heat shock prote 67.9 1.1 2.5E-05 38.4 -1.0 36 46-81 332-375 (621)
27 PRK00290 dnaK molecular chaper 62.6 1.5 3.3E-05 37.7 -1.3 36 46-81 330-373 (627)
28 TIGR02350 prok_dnaK chaperone 60.6 1.6 3.4E-05 37.2 -1.5 36 46-81 328-371 (595)
29 TIGR03286 methan_mark_15 putat 57.4 1.8 3.9E-05 36.0 -1.6 41 41-81 354-402 (404)
30 COG1077 MreB Actin-like ATPase 54.5 3.5 7.7E-05 33.6 -0.4 49 33-81 269-330 (342)
31 PRK01433 hscA chaperone protei 52.1 2.7 5.8E-05 36.3 -1.5 36 46-81 312-355 (595)
32 PTZ00400 DnaK-type molecular c 51.7 5.2 0.00011 34.9 0.2 36 46-81 371-414 (663)
33 PRK09472 ftsA cell division pr 45.8 7 0.00015 32.0 0.1 10 46-55 332-341 (420)
34 PTZ00186 heat shock 70 kDa pre 43.3 4.5 9.8E-05 35.4 -1.5 36 46-81 357-400 (657)
35 PF09693 Phage_XkdX: Phage unc 39.2 17 0.00037 20.3 1.0 11 89-99 25-35 (40)
36 KOG2960|consensus 37.9 26 0.00056 27.7 2.1 27 56-82 100-127 (328)
37 TIGR01991 HscA Fe-S protein as 37.4 5.4 0.00012 34.2 -1.9 36 46-81 316-359 (599)
38 PRK13410 molecular chaperone D 37.3 6.9 0.00015 34.2 -1.3 36 46-81 332-375 (668)
39 TIGR01669 phage_XkdX phage unc 36.3 19 0.00041 20.8 0.9 11 89-99 30-40 (45)
40 PTZ00009 heat shock 70 kDa pro 35.4 8.9 0.00019 33.3 -0.9 36 46-81 336-380 (653)
41 COG2379 GckA Putative glycerat 34.8 37 0.00081 28.5 2.7 50 3-55 74-126 (422)
42 PRK05183 hscA chaperone protei 34.4 7.5 0.00016 33.5 -1.5 36 46-81 332-375 (616)
43 TIGR02261 benz_CoA_red_D benzo 34.4 17 0.00036 28.5 0.5 35 46-80 215-262 (262)
44 TIGR00241 CoA_E_activ CoA-subs 33.5 11 0.00024 28.4 -0.6 34 45-78 206-247 (248)
45 PLN03184 chloroplast Hsp70; Pr 32.9 7.9 0.00017 33.8 -1.6 36 46-81 369-412 (673)
46 TIGR01174 ftsA cell division p 32.8 27 0.00058 27.8 1.5 21 46-66 318-348 (371)
47 PF11818 DUF3340: C-terminal d 31.7 19 0.00042 25.1 0.5 13 2-14 14-26 (143)
48 KOG0100|consensus 29.5 35 0.00075 29.3 1.7 17 39-55 355-375 (663)
49 cd00242 Ecotin Protease Inhibi 28.6 1.4E+02 0.0029 21.3 4.4 48 32-79 77-131 (136)
50 PRK13411 molecular chaperone D 28.3 13 0.00027 32.4 -1.1 36 46-81 331-375 (653)
51 PF00012 HSP70: Hsp70 protein; 26.9 8.5 0.00018 32.2 -2.4 36 46-81 332-375 (602)
52 KOG0728|consensus 24.6 31 0.00067 27.9 0.5 20 10-31 162-181 (404)
53 TIGR02259 benz_CoA_red_A benzo 24.3 21 0.00045 30.1 -0.5 39 42-80 381-432 (432)
54 TIGR03192 benz_CoA_bzdQ benzoy 22.9 13 0.00027 29.7 -2.0 40 42-81 239-287 (293)
55 PF00205 TPP_enzyme_M: Thiamin 21.7 50 0.0011 22.2 1.1 40 5-51 44-86 (137)
No 1
>KOG0676|consensus
Probab=99.93 E-value=6.2e-27 Score=188.41 Aligned_cols=90 Identities=29% Similarity=0.479 Sum_probs=82.7
Q ss_pred cccCCCCCCcchh------hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceee
Q psy4562 19 FGHQPRSPLINYQ------KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMV 72 (112)
Q Consensus 19 ~~f~p~~~gi~~~------~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~a 72 (112)
.+|+|+.+|+... .+||++||+|+|+. |||+||+||+ +..+++|.++|+|.+++
T Consensus 257 ~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~ 336 (372)
T KOG0676|consen 257 VLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSA 336 (372)
T ss_pred hcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccce
Confidence 4788888877654 57999999999998 9999999998 46789999999999999
Q ss_pred eecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562 73 FIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN 109 (112)
Q Consensus 73 W~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~ 109 (112)
|+||||+|+++ +|+++||||+||+|.|++++||||+
T Consensus 337 WlGgSIlasls-tfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 337 WLGGSILASLS-TFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred ecCceeEeecc-hHhhccccHHHHhhhCCceeeeccC
Confidence 99999999998 7999999999999999999999996
No 2
>PTZ00452 actin; Provisional
Probab=99.93 E-value=2.2e-26 Score=184.44 Aligned_cols=99 Identities=25% Similarity=0.448 Sum_probs=86.0
Q ss_pred eeecCCCCc------------cccCCCCCCcc-----hh-hhchhcCCccCcCc----eEEecCCCCC------------
Q psy4562 10 VRVVPDRHP------------FGHQPRSPLIN-----YQ-KFKIRIEDPPRRKD----MVFIGGAVLA------------ 55 (112)
Q Consensus 10 ~~~~~~~~p------------~~f~p~~~gi~-----~~-~~sI~~c~~d~r~~----IvL~GGss~~------------ 55 (112)
.+.|||... .+|+|+.+|++ +. .++|++||+|+|+. |||+||+|+|
T Consensus 239 ~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~ 318 (375)
T PTZ00452 239 PYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELT 318 (375)
T ss_pred eEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHH
Confidence 467787443 47888876544 33 57999999999999 9999999999
Q ss_pred ----CCceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562 56 ----EKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN 109 (112)
Q Consensus 56 ----~~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~ 109 (112)
+..+++|.++++|++++|+|||++|+++ .|+++||||+||+|+|+++++|||+
T Consensus 319 ~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~-~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 319 NLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLS-TQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred HhCCCCceeEEecCCCcceeEEECchhhcCcc-chhhhEeEHHHHhccCcceeeeecC
Confidence 3568999999999999999999999987 7999999999999999999999985
No 3
>PTZ00466 actin-like protein; Provisional
Probab=99.91 E-value=1.5e-25 Score=180.01 Aligned_cols=90 Identities=30% Similarity=0.509 Sum_probs=80.6
Q ss_pred cccCCCCCCcch------hhhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceee
Q psy4562 19 FGHQPRSPLINY------QKFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMV 72 (112)
Q Consensus 19 ~~f~p~~~gi~~------~~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~a 72 (112)
.+|+|+.+|++. ..+||++||+|+|+. |||+||+|+| ...+++|..+++|++++
T Consensus 265 ~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~a 344 (380)
T PTZ00466 265 VLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFST 344 (380)
T ss_pred cccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeE
Confidence 479997766543 257999999999999 9999999999 35679999999999999
Q ss_pred eecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562 73 FIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN 109 (112)
Q Consensus 73 W~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~ 109 (112)
|+|||++|+++ .|+++||||+||+|+|+++++|||+
T Consensus 345 W~GgSilasl~-~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 345 FIGGSILASLA-TFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred EECchhhcCcc-chhhhEeEHHHHhhhCcHhheeecC
Confidence 99999999987 7999999999999999999999985
No 4
>PTZ00281 actin; Provisional
Probab=99.91 E-value=1.6e-25 Score=179.09 Aligned_cols=99 Identities=32% Similarity=0.466 Sum_probs=86.6
Q ss_pred eeecCCCC------------ccccCCCCCCcc-----h-hhhchhcCCccCcCc----eEEecCCCCC------------
Q psy4562 10 VRVVPDRH------------PFGHQPRSPLIN-----Y-QKFKIRIEDPPRRKD----MVFIGGAVLA------------ 55 (112)
Q Consensus 10 ~~~~~~~~------------p~~f~p~~~gi~-----~-~~~sI~~c~~d~r~~----IvL~GGss~~------------ 55 (112)
.+.+||.. +.+|+|+.+|++ + ..++|++||+|+|+. |||+||+|+|
T Consensus 240 ~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~ 319 (376)
T PTZ00281 240 SYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELT 319 (376)
T ss_pred eEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHH
Confidence 57788865 358999776554 3 367999999999999 9999999999
Q ss_pred ----CCceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562 56 ----EKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN 109 (112)
Q Consensus 56 ----~~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~ 109 (112)
...+++|.++++|++++|+|||++|+++ .|+++||||+||+|+|+++++|||+
T Consensus 320 ~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~-~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred HhCCCCcceEEecCCCCceeEEECcccccCcc-cHhhceeeHHHHhhhCchheeeecC
Confidence 3468999999999999999999999987 7999999999999999999999985
No 5
>PTZ00004 actin-2; Provisional
Probab=99.90 E-value=2.8e-24 Score=171.99 Aligned_cols=90 Identities=30% Similarity=0.448 Sum_probs=79.8
Q ss_pred cccCCCCCCcc------hh-hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCcee
Q psy4562 19 FGHQPRSPLIN------YQ-KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDM 71 (112)
Q Consensus 19 ~~f~p~~~gi~------~~-~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~ 71 (112)
.+|+|+.+|.+ .. .+||++||+|+|+. |||+||+|+| ...+++|..+++|+++
T Consensus 262 ~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~ 341 (378)
T PTZ00004 262 ALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYS 341 (378)
T ss_pred cccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCcee
Confidence 48999855544 43 57999999999999 9999999999 3457999999999999
Q ss_pred eeecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562 72 VFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN 109 (112)
Q Consensus 72 aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~ 109 (112)
+|+|||++|+++ .|+++||||+||+|+|+++++|||+
T Consensus 342 aW~Ggsilas~~-~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 342 VWIGGSILSSLP-TFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred EEECcccccCcc-chhhhEeEHHHHhhhCcceEEeecC
Confidence 999999999987 7999999999999999999999985
No 6
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.88 E-value=1.3e-23 Score=169.64 Aligned_cols=91 Identities=20% Similarity=0.269 Sum_probs=78.6
Q ss_pred cccCCCCC------Ccchh-hhchhcCCccCcCc----eEEecCCCCC---------------C----------------
Q psy4562 19 FGHQPRSP------LINYQ-KFKIRIEDPPRRKD----MVFIGGAVLA---------------E---------------- 56 (112)
Q Consensus 19 ~~f~p~~~------gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~---------------~---------------- 56 (112)
.+|+|+.+ ||++. .++|++||+|+|+. |||+||+|+| +
T Consensus 278 ~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~ 357 (414)
T PTZ00280 278 MFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKP 357 (414)
T ss_pred cccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCC
Confidence 47888765 45443 67999999999999 9999999998 1
Q ss_pred -CceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccCC
Q psy4562 57 -KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNR 110 (112)
Q Consensus 57 -~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~~ 110 (112)
..+++|.++++|++++|+|||+||+++ +|+++||||+||+|+|+++++++..+
T Consensus 358 ~~~~v~v~~~~~~~~~~W~GgSilas~~-~f~~~~itk~eY~E~G~~i~~~~~~~ 411 (414)
T PTZ00280 358 IPIDVNVVSHPRQRYAVWYGGSMLASSP-EFEKVCHTKAEYDEYGPSICRYNNVF 411 (414)
T ss_pred CCceEEEecCCccceeEEEChhhcccCc-chhhheEEHHHHhccChHheeecccc
Confidence 246889999999999999999999987 79999999999999999999987554
No 7
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.87 E-value=2.5e-23 Score=164.97 Aligned_cols=100 Identities=27% Similarity=0.429 Sum_probs=83.3
Q ss_pred eeeecCCCCc------------cccCCCCCCc------------chh-hhchhcCCccCcCc----eEEecCCCCC----
Q psy4562 9 AVRVVPDRHP------------FGHQPRSPLI------------NYQ-KFKIRIEDPPRRKD----MVFIGGAVLA---- 55 (112)
Q Consensus 9 ~~~~~~~~~p------------~~f~p~~~gi------------~~~-~~sI~~c~~d~r~~----IvL~GGss~~---- 55 (112)
..+.+||.+. .+|+|+..+. .+. .++|++||+|+|+. |||+||+|++
T Consensus 248 ~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~ 327 (393)
T PF00022_consen 248 KSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFK 327 (393)
T ss_dssp EEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHH
T ss_pred eecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchH
Confidence 3467787764 4788877654 333 57999999999998 9999999999
Q ss_pred ------------CCceEEEecCC-CCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562 56 ------------EKFKIRIEDPP-RRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN 109 (112)
Q Consensus 56 ------------~~~~v~V~~~~-~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~ 109 (112)
+..+++|..++ +|.+++|+|||++|++. .|+++||||+||+|+|+++++|||+
T Consensus 328 eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~-~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 328 ERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS-SFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp HHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG-GGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred HHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc-cccceeeeHHHHhCcCcceeeecCC
Confidence 45689999998 99999999999999998 7999999999999999999999995
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.86 E-value=1.3e-22 Score=160.58 Aligned_cols=90 Identities=30% Similarity=0.527 Sum_probs=79.3
Q ss_pred cccCCCCCCcc-----hh-hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceee
Q psy4562 19 FGHQPRSPLIN-----YQ-KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMV 72 (112)
Q Consensus 19 ~~f~p~~~gi~-----~~-~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~a 72 (112)
.+|+|+.+|++ .. ..+|++||+|+|+. |||+||+|++ ...+++|..+++|.+++
T Consensus 258 ~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~ 337 (373)
T smart00268 258 ILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSV 337 (373)
T ss_pred hcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccce
Confidence 57999765544 33 57899999999999 9999999998 24578899899999999
Q ss_pred eecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562 73 FIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN 109 (112)
Q Consensus 73 W~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~ 109 (112)
|+|||++|++. .|+++||||+||+|+|+++++|||+
T Consensus 338 W~G~silas~~-~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 338 WLGGSILASLS-TFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred EeCcccccCcc-chhhhEEEHHHHhhhCcceEEeecC
Confidence 99999999987 7999999999999999999999985
No 9
>KOG0679|consensus
Probab=99.81 E-value=5.9e-21 Score=153.74 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=73.0
Q ss_pred CCCcchh-hhchhcCCccCcCc----eEEecCCCCC---------------CCceEEEecCC---CCceeeeecceeeec
Q psy4562 25 SPLINYQ-KFKIRIEDPPRRKD----MVFIGGAVLA---------------EKFKIRIEDPP---RRKDMVFIGGAVLAE 81 (112)
Q Consensus 25 ~~gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~---------------~~~~v~V~~~~---~~~~~aW~Ggsila~ 81 (112)
.+|+..- ..||+.||.|+|.. |||+||||++ +..++++++.. +|++++|+||||||+
T Consensus 319 ~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSILAS 398 (426)
T KOG0679|consen 319 MLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSILAS 398 (426)
T ss_pred ccCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHHhc
Confidence 3455443 57999999999999 9999999998 45688988654 799999999999999
Q ss_pred ccccccccceeHHHHhhcCc-hhhhhccC
Q psy4562 82 VMKDRDAFWMSNKEYQERGV-SVLSKLGN 109 (112)
Q Consensus 82 ~~~~f~~~~iTr~eYeE~G~-~iv~~k~~ 109 (112)
+. +|+++||||+||||.|. +.+.+||.
T Consensus 399 Lg-tFqq~WiSKqEYEE~G~d~~ve~rc~ 426 (426)
T KOG0679|consen 399 LG-TFQQLWISKQEYEEVGKDQLVERRCP 426 (426)
T ss_pred cc-cHHHHhhhHHHHHHhhhHHHHhhcCC
Confidence 98 79999999999999999 78888884
No 10
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.78 E-value=7.3e-20 Score=144.97 Aligned_cols=88 Identities=31% Similarity=0.514 Sum_probs=75.1
Q ss_pred cccCCCCC-----Ccchh-hhchhcCCccCcCc----eEEecCCCCC---------------C---CceEEEecCCCCce
Q psy4562 19 FGHQPRSP-----LINYQ-KFKIRIEDPPRRKD----MVFIGGAVLA---------------E---KFKIRIEDPPRRKD 70 (112)
Q Consensus 19 ~~f~p~~~-----gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~---------------~---~~~v~V~~~~~~~~ 70 (112)
.+|+|+.+ ||... ..+|++||+|.|+. |+|+||+|++ + ..++++..+++|.+
T Consensus 256 ~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~ 335 (371)
T cd00012 256 ILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKY 335 (371)
T ss_pred hcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccc
Confidence 47888655 44433 57899999999988 9999999998 1 34577778889999
Q ss_pred eeeecceeeecccccccccceeHHHHhhcCchhhhhc
Q psy4562 71 MVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKL 107 (112)
Q Consensus 71 ~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k 107 (112)
++|+|||++|++. .|+++||||+||+|+|+++++||
T Consensus 336 ~aw~G~si~as~~-~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 336 SVWLGGSILASLS-TFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred cEEeCchhhcCch-hhhheEeeHHHHhhhCchhEecC
Confidence 9999999999987 79999999999999999999875
No 11
>KOG0680|consensus
Probab=99.77 E-value=2e-19 Score=142.87 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=81.7
Q ss_pred cccCCCCCCcchh------hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceee
Q psy4562 19 FGHQPRSPLINYQ------KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMV 72 (112)
Q Consensus 19 ~~f~p~~~gi~~~------~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~a 72 (112)
.+|.|+++||+.+ .+||+.||..+|+. ||++|||++| .++.++|..|.++..-+
T Consensus 284 ilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~ 363 (400)
T KOG0680|consen 284 ILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFA 363 (400)
T ss_pred hhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceee
Confidence 3799999988875 47999999999999 9999999999 46789999999999999
Q ss_pred eecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562 73 FIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN 109 (112)
Q Consensus 73 W~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~ 109 (112)
|.||+.++... .|..+||||+||+|+|++++.+|++
T Consensus 364 W~~g~~~~~~~-~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 364 WEGGSEFAKTD-SFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred ehhccccccCc-chhcceecHhhHhhcCchhhhhhcc
Confidence 99999999865 7999999999999999999998865
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.76 E-value=2.1e-19 Score=147.76 Aligned_cols=83 Identities=24% Similarity=0.426 Sum_probs=74.0
Q ss_pred CCcchh-hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceeeeecceeeecccc
Q psy4562 26 PLINYQ-KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMVFIGGAVLAEVMK 84 (112)
Q Consensus 26 ~gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~aW~Ggsila~~~~ 84 (112)
.||.++ .++|++||.+.|+. |||+||+|++ ...+++|..+++|.+.+|+|||+||++.
T Consensus 341 ~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~~~- 419 (444)
T COG5277 341 AGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLE- 419 (444)
T ss_pred cchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcccc-
Confidence 345554 47999999999999 9999999998 3467999999999999999999999976
Q ss_pred cccccceeHHHHhhcCchhhhhccC
Q psy4562 85 DRDAFWMSNKEYQERGVSVLSKLGN 109 (112)
Q Consensus 85 ~f~~~~iTr~eYeE~G~~iv~~k~~ 109 (112)
.|+++||||+||+|+|+++++++++
T Consensus 420 ~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 420 TFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred chhheEeeHHHhhhhhhHHHhhccC
Confidence 7999999999999999999998874
No 13
>KOG0677|consensus
Probab=99.70 E-value=6.4e-18 Score=132.09 Aligned_cols=102 Identities=48% Similarity=0.754 Sum_probs=87.2
Q ss_pred ccceeeecCCCCc------------cccCCCCCCcchh------hhchhcCCccCcCc----eEEecCCCCC--------
Q psy4562 6 KWSAVRVVPDRHP------------FGHQPRSPLINYQ------KFKIRIEDPPRRKD----MVFIGGAVLA-------- 55 (112)
Q Consensus 6 ~~~~~~~~~~~~p------------~~f~p~~~gi~~~------~~sI~~c~~d~r~~----IvL~GGss~~-------- 55 (112)
--.+.|-+||.-- -+|||..+.++.+ .++|+..|+|+|.+ |||+||+||+
T Consensus 236 vLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLE 315 (389)
T KOG0677|consen 236 VLVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLE 315 (389)
T ss_pred eeeeeeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHH
Confidence 3456677787653 3799988776654 57999999999999 9999999998
Q ss_pred -------------------CCceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhc
Q psy4562 56 -------------------EKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKL 107 (112)
Q Consensus 56 -------------------~~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k 107 (112)
+.+++++.+||.|.+.+++||++||.+..+-+++|+||+||+|.|.+.+.+.
T Consensus 316 kElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 316 KELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 4678999999999999999999999876677899999999999999998874
No 14
>KOG0678|consensus
Probab=99.49 E-value=7.3e-15 Score=117.28 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCccccCCCCCC-cchh-hhchhcCCccCcCc----eEEecCCCCC------------------------------CCce
Q psy4562 16 RHPFGHQPRSPL-INYQ-KFKIRIEDPPRRKD----MVFIGGAVLA------------------------------EKFK 59 (112)
Q Consensus 16 ~~p~~f~p~~~g-i~~~-~~sI~~c~~d~r~~----IvL~GGss~~------------------------------~~~~ 59 (112)
+||....|+++- +... +..|++||+|.|+. |+|+||+||| +..+
T Consensus 282 f~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vd 361 (415)
T KOG0678|consen 282 FHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVD 361 (415)
T ss_pred cCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCce
Confidence 344444444332 2222 57999999999998 9999999998 2335
Q ss_pred EEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhcc
Q psy4562 60 IRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108 (112)
Q Consensus 60 v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~ 108 (112)
|+|......++++|.|||+|++.+ .|-..+-||++|||+|++|++..-
T Consensus 362 vqvish~~qr~avwfggs~lastp-ef~~~~~tk~~yee~g~si~r~~~ 409 (415)
T KOG0678|consen 362 VQVLSHLLQRTAVWFGGSKLASTP-EFVPACHTKEDYEEYGPSICRTNP 409 (415)
T ss_pred eehhhhhhhhcceeccCccccCCc-ccccccCcchhhhhhChhhhhcCc
Confidence 788888888999999999999977 688899999999999999998743
No 15
>KOG0681|consensus
Probab=99.49 E-value=1e-14 Score=121.86 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=81.5
Q ss_pred ecCCCCc-cccCCCCCCcchhh------hchhcCCccCcCc----eEEecCCCCCC----------------CceEEEec
Q psy4562 12 VVPDRHP-FGHQPRSPLINYQK------FKIRIEDPPRRKD----MVFIGGAVLAE----------------KFKIRIED 64 (112)
Q Consensus 12 ~~~~~~p-~~f~p~~~gi~~~~------~sI~~c~~d~r~~----IvL~GGss~~~----------------~~~v~V~~ 64 (112)
|+-.|=| ++|||+.+|++.++ ..+.+-|.|.+.. |+|+||+++++ +.+|+|..
T Consensus 517 VEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~r 596 (645)
T KOG0681|consen 517 VERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVR 596 (645)
T ss_pred ceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEe
Confidence 4445556 48999999999874 4667788777664 99999999992 44689999
Q ss_pred CCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562 65 PPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN 109 (112)
Q Consensus 65 ~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~ 109 (112)
..+|..+||.||+.+|... +|...++||+||+|+|+.+++..+.
T Consensus 597 asdP~LDAW~GA~~~a~n~-~f~~~~~Tr~dy~E~G~e~~kEh~~ 640 (645)
T KOG0681|consen 597 ASDPVLDAWRGASAWAANP-TFTLTQITRKDYEEKGEEYLKEHVA 640 (645)
T ss_pred cCCcchhhhhhhHHhhcCc-ccchhhhhHHhhhhhhHHHHHHHhh
Confidence 9999999999999999865 7999999999999999999987664
No 16
>KOG0797|consensus
Probab=98.53 E-value=2.2e-08 Score=83.95 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=61.8
Q ss_pred hchhcCCccCcCc-----eEEecCCCCC--------------------CCceEEEecCC---CCceeeeecceeeecccc
Q psy4562 33 FKIRIEDPPRRKD-----MVFIGGAVLA--------------------EKFKIRIEDPP---RRKDMVFIGGAVLAEVMK 84 (112)
Q Consensus 33 ~sI~~c~~d~r~~-----IvL~GGss~~--------------------~~~~v~V~~~~---~~~~~aW~Ggsila~~~~ 84 (112)
.||..|-.|.-+. |.++||..+| ....|.|+.++ ++++-+|.||+|++.+.
T Consensus 512 ~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~- 590 (618)
T KOG0797|consen 512 SSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILD- 590 (618)
T ss_pred HhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHH-
Confidence 3555554433332 9999999998 12347888766 78999999999999986
Q ss_pred cccccceeHHHHhhcCchhhhhccCCC
Q psy4562 85 DRDAFWMSNKEYQERGVSVLSKLGNRA 111 (112)
Q Consensus 85 ~f~~~~iTr~eYeE~G~~iv~~k~~~~ 111 (112)
.-.+.||++.||+-+|.++++.||.|+
T Consensus 591 ~~~ELwI~~~dW~~~G~RvL~~k~~f~ 617 (618)
T KOG0797|consen 591 FVRELWIENSDWQVHGVRVLQYKKYFS 617 (618)
T ss_pred HHHHHheechhHhhhhhhhhhhccccc
Confidence 568999999999999999999998764
No 17
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=94.43 E-value=0.0033 Score=49.44 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=35.5
Q ss_pred hhchhcCCccCcCc-----eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 32 KFKIRIEDPPRRKD-----MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 32 ~~sI~~c~~d~r~~-----IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
..+++.|+.+.+.+ |||+||+|+++ .+.+.|....+|..++=.|+++++.
T Consensus 264 ~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 264 KRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHh
Confidence 46788899877643 99999999992 3345555555666666678877653
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=93.87 E-value=0.0043 Score=48.60 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=33.4
Q ss_pred hhchhcCCccCcCc-----eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 32 KFKIRIEDPPRRKD-----MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 32 ~~sI~~c~~d~r~~-----IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
..+|++|+.+.+++ |||+||+|+++ .+.++|....+|..++=.|+++++.
T Consensus 261 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 261 KVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALE 323 (334)
T ss_pred HHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHh
Confidence 46788999877653 99999999992 2333344444445555568777654
No 19
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=93.71 E-value=0.0044 Score=48.40 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=34.2
Q ss_pred hhchhcCCccCcCc-----eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 32 KFKIRIEDPPRRKD-----MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 32 ~~sI~~c~~d~r~~-----IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
..+|++|+.+.+.+ |||+||+|+++ .+.+.+..+.++..++=+|+++++.
T Consensus 265 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 265 KSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALE 327 (335)
T ss_pred HHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHh
Confidence 46888999887653 99999999992 2334444444555555568887765
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=93.40 E-value=0.0086 Score=47.43 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=32.9
Q ss_pred hhchhcCCccCcCc-----eEEecCCCCCC--------CceEEEecCCCCceeeeecceee
Q psy4562 32 KFKIRIEDPPRRKD-----MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVL 79 (112)
Q Consensus 32 ~~sI~~c~~d~r~~-----IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsil 79 (112)
..+|++|+++.++. |||+||+|+++ .+.+.|....+|..++=+|+...
T Consensus 263 ~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 263 RATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 46889999888754 99999999992 23344444455666655666654
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=92.73 E-value=0.0065 Score=48.70 Aligned_cols=50 Identities=24% Similarity=0.277 Sum_probs=35.3
Q ss_pred hhchhcCCccCcCc-----eEEecCCCCC--------CCceEEEecCCCCceeeeecceeeec
Q psy4562 32 KFKIRIEDPPRRKD-----MVFIGGAVLA--------EKFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 32 ~~sI~~c~~d~r~~-----IvL~GGss~~--------~~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
...+.+||+++..+ |+|+||.+++ +.+.+.|...++|.+++=.|+..+.+
T Consensus 258 ~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 258 KEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 35778899998877 9999999999 34456666666777777777765543
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=91.94 E-value=0.015 Score=45.87 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=35.2
Q ss_pred hhchhcCCccCcCc-----eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 32 KFKIRIEDPPRRKD-----MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 32 ~~sI~~c~~d~r~~-----IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
..++.+|+.+.++. |+|+||+|+++ .+.+.|....+|..++=+|+++.+.
T Consensus 260 ~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 260 KSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLE 322 (336)
T ss_pred HHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHh
Confidence 46788898776643 99999999982 2334444445667777788888764
No 23
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=81.12 E-value=0.56 Score=35.61 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=24.5
Q ss_pred eEEecCCCCC--------CCceEEEecCCCCceeeeeccee
Q psy4562 46 MVFIGGAVLA--------EKFKIRIEDPPRRKDMVFIGGAV 78 (112)
Q Consensus 46 IvL~GGss~~--------~~~~v~V~~~~~~~~~aW~Ggsi 78 (112)
|+|+||++++ +.+.+.|..+.+|.+++=+|+++
T Consensus 198 v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 198 LYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred EEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 9999999998 23445566677888887777653
No 24
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=77.52 E-value=0.42 Score=36.80 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=22.9
Q ss_pred eEEecCCCCCC--------CceEEEecCCCCceeeeeccee
Q psy4562 46 MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAV 78 (112)
Q Consensus 46 IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsi 78 (112)
|+|+||+++++ .+.+.|..+++|.+++=+|+++
T Consensus 225 IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~ 265 (267)
T PRK15080 225 IYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIAL 265 (267)
T ss_pred EEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHh
Confidence 99999999982 3344455566777776666654
No 25
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=77.15 E-value=0.62 Score=38.52 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=33.3
Q ss_pred ccCcCceEEecCCCCC--------CCceEEEecCCCCceeeeecceeeec
Q psy4562 40 PPRRKDMVFIGGAVLA--------EKFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 40 ~d~r~~IvL~GGss~~--------~~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
.+.++.||+.||+++- ..+..+|..|+++++.-=+|++++++
T Consensus 340 ~~i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 340 VDIEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred cCCCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHh
Confidence 3445559999999986 45568899999998887788888876
No 26
>CHL00094 dnaK heat shock protein 70
Probab=67.95 E-value=1.1 Score=38.43 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=25.7
Q ss_pred eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++ .+...+....++..++-+||++.|.
T Consensus 332 ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa 375 (621)
T CHL00094 332 VVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAG 375 (621)
T ss_pred EEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHH
Confidence 99999999982 2223344455667788889998875
No 27
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=62.58 E-value=1.5 Score=37.67 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=25.1
Q ss_pred eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++ .+...+....++..++-.|+++.|.
T Consensus 330 ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa 373 (627)
T PRK00290 330 VILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGG 373 (627)
T ss_pred EEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHH
Confidence 99999999982 1222344455667778888888764
No 28
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=60.65 E-value=1.6 Score=37.16 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=26.0
Q ss_pred eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++ .+...+....++..++-.|+++.|.
T Consensus 328 V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa 371 (595)
T TIGR02350 328 VILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGG 371 (595)
T ss_pred EEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHH
Confidence 99999999982 2233455555677778889888864
No 29
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=57.42 E-value=1.8 Score=35.97 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=31.5
Q ss_pred cCcCceEEecCCCCC--------CCceEEEecCCCCceeeeecceeeec
Q psy4562 41 PRRKDMVFIGGAVLA--------EKFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 41 d~r~~IvL~GGss~~--------~~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
++++.|+++||.+.. ..+..++..|+++++..=+|++++|+
T Consensus 354 ~i~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 354 DVREPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 455559999999876 34456777788999887789988875
No 30
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=54.51 E-value=3.5 Score=33.56 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=34.3
Q ss_pred hchhcCCccCcCc-----eEEecCCCCC--------CCceEEEecCCCCceeeeecceeeec
Q psy4562 33 FKIRIEDPPRRKD-----MVFIGGAVLA--------EKFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 33 ~sI~~c~~d~r~~-----IvL~GGss~~--------~~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
..+..||+++-.+ |+|+||.+++ ....+.|.-.+++-..+=+|......
T Consensus 269 ~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le 330 (342)
T COG1077 269 LVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALE 330 (342)
T ss_pred HHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhh
Confidence 4677899988777 9999999998 33445566566666565566655443
No 31
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=52.11 E-value=2.7 Score=36.27 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=23.9
Q ss_pred eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++ .+..++....++..++=.||++.|.
T Consensus 312 ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~ 355 (595)
T PRK01433 312 VILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAE 355 (595)
T ss_pred EEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHH
Confidence 99999999982 2233444445566666677777764
No 32
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=51.67 E-value=5.2 Score=34.86 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=23.7
Q ss_pred eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++ .+...+....++..++=.|+++.|.
T Consensus 371 ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa 414 (663)
T PTZ00400 371 VILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAG 414 (663)
T ss_pred EEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHH
Confidence 99999999982 1222333444566666678887764
No 33
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=45.78 E-value=7 Score=31.96 Aligned_cols=10 Identities=40% Similarity=0.687 Sum_probs=9.7
Q ss_pred eEEecCCCCC
Q psy4562 46 MVFIGGAVLA 55 (112)
Q Consensus 46 IvL~GGss~~ 55 (112)
|||+||++++
T Consensus 332 ivLtGG~a~l 341 (420)
T PRK09472 332 IVLTGGAAQI 341 (420)
T ss_pred EEEeCchhcc
Confidence 9999999998
No 34
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=43.34 E-value=4.5 Score=35.35 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=21.6
Q ss_pred eEEecCCCCCCC--------ceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAEK--------FKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~~--------~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++. +........+|..++=+||++.|.
T Consensus 357 VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~ 400 (657)
T PTZ00186 357 VVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGG 400 (657)
T ss_pred EEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHH
Confidence 999999999821 111122333455555567777764
No 35
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=39.18 E-value=17 Score=20.29 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=9.4
Q ss_pred cceeHHHHhhc
Q psy4562 89 FWMSNKEYQER 99 (112)
Q Consensus 89 ~~iTr~eYeE~ 99 (112)
-|||++||+|.
T Consensus 25 g~IT~eey~eI 35 (40)
T PF09693_consen 25 GWITKEEYKEI 35 (40)
T ss_pred CeECHHHHHHh
Confidence 39999999984
No 36
>KOG2960|consensus
Probab=37.90 E-value=26 Score=27.65 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=19.1
Q ss_pred CCceEEEecC-CCCceeeeecceeeecc
Q psy4562 56 EKFKIRIEDP-PRRKDMVFIGGAVLAEV 82 (112)
Q Consensus 56 ~~~~v~V~~~-~~~~~~aW~Ggsila~~ 82 (112)
++++|-++.. -.|.-.+|+||.+|+.+
T Consensus 100 PdlkvaIIE~SVaPGGGaWLGGQLFSAM 127 (328)
T KOG2960|consen 100 PDLKVAIIESSVAPGGGAWLGGQLFSAM 127 (328)
T ss_pred CCceEEEEEeeecCCCcccccchhhhhh
Confidence 5667777643 34566799999988753
No 37
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=37.45 E-value=5.4 Score=34.25 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=22.4
Q ss_pred eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++ .+...+....++..++=.||++.|.
T Consensus 316 ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~ 359 (599)
T TIGR01991 316 VVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQAD 359 (599)
T ss_pred EEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHH
Confidence 99999999982 1222233344555555667777664
No 38
>PRK13410 molecular chaperone DnaK; Provisional
Probab=37.32 E-value=6.9 Score=34.23 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=21.1
Q ss_pred eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++ -+...+....++..++=+||++.|.
T Consensus 332 VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa 375 (668)
T PRK13410 332 VVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAG 375 (668)
T ss_pred EEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHH
Confidence 99999999982 1122223333444455567776654
No 39
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=36.31 E-value=19 Score=20.78 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=9.6
Q ss_pred cceeHHHHhhc
Q psy4562 89 FWMSNKEYQER 99 (112)
Q Consensus 89 ~~iTr~eYeE~ 99 (112)
-|||.+||+|.
T Consensus 30 ~~IT~eey~eI 40 (45)
T TIGR01669 30 KLITREQYKVI 40 (45)
T ss_pred CccCHHHHHHH
Confidence 59999999984
No 40
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=35.42 E-value=8.9 Score=33.29 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=22.7
Q ss_pred eEEecCCCCCC--------Cce-EEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAE--------KFK-IRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~--------~~~-v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++ .+. ..+....++..++=+||++.|.
T Consensus 336 ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa 380 (653)
T PTZ00009 336 VVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAA 380 (653)
T ss_pred EEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHH
Confidence 99999999982 111 1233344555566678887764
No 41
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=34.84 E-value=37 Score=28.48 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=31.9
Q ss_pred cccccceeeecCCCCccccCCCCCCcchhhhchhcCCccCcCc---eEEecCCCCC
Q psy4562 3 YTLKWSAVRVVPDRHPFGHQPRSPLINYQKFKIRIEDPPRRKD---MVFIGGAVLA 55 (112)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~f~p~~~gi~~~~~sI~~c~~d~r~~---IvL~GGss~~ 55 (112)
|.-+-+.+.|+...||+ |+..|+.....-+.....-.-.+ +++|||.|.+
T Consensus 74 ~~~~~~~ieViea~HPv---PDe~s~~asrrlL~~v~~l~e~D~Vi~LISGGGSaL 126 (422)
T COG2379 74 YGGPCPRIEVIEAGHPV---PDEASLKASRRLLELVSGLTEDDLVIVLISGGGSAL 126 (422)
T ss_pred cCCCCCceeEEeCCCCC---CCchhHHHHHHHHHHhcCCCCCcEEEEEEeCCchhh
Confidence 44556789999999997 88888887654443332221222 5677766654
No 42
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=34.39 E-value=7.5 Score=33.54 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=23.1
Q ss_pred eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++ .+...+....++..++=.||++.|.
T Consensus 332 ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~ 375 (616)
T PRK05183 332 VVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQAD 375 (616)
T ss_pred EEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHH
Confidence 99999999982 1222233344556666678887764
No 43
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=34.38 E-value=17 Score=28.54 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=25.1
Q ss_pred eEEecCCCCC--------C-----CceEEEecCCCCceeeeecceeee
Q psy4562 46 MVFIGGAVLA--------E-----KFKIRIEDPPRRKDMVFIGGAVLA 80 (112)
Q Consensus 46 IvL~GGss~~--------~-----~~~v~V~~~~~~~~~aW~Ggsila 80 (112)
|+++||.+.- + ...+.|..++++++..=+|+++++
T Consensus 215 v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 215 VLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred EEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 9999998874 1 234567777888887667777654
No 44
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=33.45 E-value=11 Score=28.44 Aligned_cols=34 Identities=26% Similarity=0.542 Sum_probs=23.4
Q ss_pred ceEEecCCCCC--------CCceEEEecCCCCceeeeeccee
Q psy4562 45 DMVFIGGAVLA--------EKFKIRIEDPPRRKDMVFIGGAV 78 (112)
Q Consensus 45 ~IvL~GGss~~--------~~~~v~V~~~~~~~~~aW~Ggsi 78 (112)
.|+++||.+.. ..+.+.|..|+++.+..=+|+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 39999999976 34456677777776554456654
No 45
>PLN03184 chloroplast Hsp70; Provisional
Probab=32.90 E-value=7.9 Score=33.85 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=20.8
Q ss_pred eEEecCCCCCCC--------ceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAEK--------FKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~~--------~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++. +...+....++..++=+|+++.|.
T Consensus 369 ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa 412 (673)
T PLN03184 369 VILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAG 412 (673)
T ss_pred EEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHH
Confidence 999999999821 111222223444555567776654
No 46
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=32.82 E-value=27 Score=27.78 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=15.3
Q ss_pred eEEecCCCCCC----------CceEEEecCC
Q psy4562 46 MVFIGGAVLAE----------KFKIRIEDPP 66 (112)
Q Consensus 46 IvL~GGss~~~----------~~~v~V~~~~ 66 (112)
|+|+||+|+++ ..++++..|.
T Consensus 318 IvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~ 348 (371)
T TIGR01174 318 IVLTGGGAQLEGIVELAEKVFDNPVRIGLPQ 348 (371)
T ss_pred EEEeChHHcccCHHHHHHHHhCCCeEEECCC
Confidence 99999999982 3346666653
No 47
>PF11818 DUF3340: C-terminal domain of tail specific protease (DUF3340); InterPro: IPR020992 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the C-terminal domain of a family of serine peptidases belonging to MEROPS peptidase family S41A (C-terminal processing peptidase-1, clan SK). Its function is unknown. This region is typically between 88 to 187 amino acids in length.
Probab=31.69 E-value=19 Score=25.12 Aligned_cols=13 Identities=23% Similarity=0.716 Sum_probs=10.5
Q ss_pred ccccccceeeecC
Q psy4562 2 EYTLKWSAVRVVP 14 (112)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (112)
+|+||||.|.-++
T Consensus 14 ~nALpWD~I~~a~ 26 (143)
T PF11818_consen 14 DNALPWDQIPPAP 26 (143)
T ss_pred CCCCCCCCCCCcC
Confidence 6899999998544
No 48
>KOG0100|consensus
Probab=29.47 E-value=35 Score=29.32 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=13.9
Q ss_pred CccCcCc----eEEecCCCCC
Q psy4562 39 DPPRRKD----MVFIGGAVLA 55 (112)
Q Consensus 39 ~~d~r~~----IvL~GGss~~ 55 (112)
|.++.+. |||+||+|.+
T Consensus 355 Ds~lkKsdideiVLVGGsTrI 375 (663)
T KOG0100|consen 355 DSDLKKSDIDEIVLVGGSTRI 375 (663)
T ss_pred hcCcccccCceEEEecCcccC
Confidence 5566666 9999999987
No 49
>cd00242 Ecotin Protease Inhibitor Ecotin; homodimeric protease inhibitor. Protease Inhibitor Ecotin; homodimeric protease inhibitor which binds two chymotrypsin-like serine proteases to form a heterotetramer. Found in bacterial periplasm. Inhibits a broad range of serine proteases including collagenase, trypsin, chymotrypsin, elastase, and factor Xa but not thrombin. Inhibition mechanism involves binding at two different protease contact sites: the primary and secondary binding sites. Primary site loops of ecotin bind to the active site of target proteases in a substrate-like manner with the P1 residue in ecotin mimicking the interactions of a canonical P1 substrate residue.
Probab=28.61 E-value=1.4e+02 Score=21.30 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=31.6
Q ss_pred hhchhcCCccCcCc-eEEecC-CCCC---CCceEEEecCCC--Cceeeeecceee
Q psy4562 32 KFKIRIEDPPRRKD-MVFIGG-AVLA---EKFKIRIEDPPR--RKDMVFIGGAVL 79 (112)
Q Consensus 32 ~~sI~~c~~d~r~~-IvL~GG-ss~~---~~~~v~V~~~~~--~~~~aW~Ggsil 79 (112)
..+++.||...++. -|-.+| ..++ +.+.|.|..|.+ =+|-.|...+.+
T Consensus 77 ~sT~MaC~d~~k~~~FV~~~~~~~~~rYnSklPiVvY~P~~~evrYRiW~~~~~~ 131 (136)
T cd00242 77 VSTMMACPDGKKEQKFVTANLGAGMLRYNSRLPIVVYTPKDVEVRYRIWKAGEKI 131 (136)
T ss_pred ceeeeeCCCCCcceeEEEecCCCceEecCCCCCEEEECCCCCEEEEEEEecccee
Confidence 35678899666555 444445 4444 567899998875 367778876543
No 50
>PRK13411 molecular chaperone DnaK; Provisional
Probab=28.27 E-value=13 Score=32.43 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=22.7
Q ss_pred eEEecCCCCCCC--------ce-EEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLAEK--------FK-IRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~~~--------~~-v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||+|.++. +. .++....++..++=.||++.|.
T Consensus 331 ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa 375 (653)
T PRK13411 331 VILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAG 375 (653)
T ss_pred EEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHH
Confidence 999999999821 21 2233444555555567777764
No 51
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=26.92 E-value=8.5 Score=32.23 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=23.0
Q ss_pred eEEecCCCCC--------CCceEEEecCCCCceeeeecceeeec
Q psy4562 46 MVFIGGAVLA--------EKFKIRIEDPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 46 IvL~GGss~~--------~~~~v~V~~~~~~~~~aW~Ggsila~ 81 (112)
|+|+||++.+ +.+.-.+....++..++=.||+++|.
T Consensus 332 V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 332 VLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp EEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHH
T ss_pred eEEecCcccchhhhhhhhhccccccccccccccccccccccchh
Confidence 9999999998 12222344455556666678888774
No 52
>KOG0728|consensus
Probab=24.60 E-value=31 Score=27.95 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=14.1
Q ss_pred eeecCCCCccccCCCCCCcchh
Q psy4562 10 VRVVPDRHPFGHQPRSPLINYQ 31 (112)
Q Consensus 10 ~~~~~~~~p~~f~p~~~gi~~~ 31 (112)
+--+|.+||++|. .+||..+
T Consensus 162 VIeLPvKHPELF~--aLGIaQP 181 (404)
T KOG0728|consen 162 VIELPVKHPELFE--ALGIAQP 181 (404)
T ss_pred HHhccccCHHHHH--hcCCCCC
Confidence 3357999999983 5666554
No 53
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=24.35 E-value=21 Score=30.11 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=27.3
Q ss_pred CcCceEEecCCCCC--------CCc-----eEEEecCCCCceeeeecceeee
Q psy4562 42 RRKDMVFIGGAVLA--------EKF-----KIRIEDPPRRKDMVFIGGAVLA 80 (112)
Q Consensus 42 ~r~~IvL~GGss~~--------~~~-----~v~V~~~~~~~~~aW~Ggsila 80 (112)
.++.|+++||.+.- +.+ ..+|..|+++++..=+|++++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 34449999999974 122 2457778888888777887664
No 54
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=22.89 E-value=13 Score=29.72 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=27.7
Q ss_pred CcCceEEecCCCCC--------CCceEEEe-cCCCCceeeeecceeeec
Q psy4562 42 RRKDMVFIGGAVLA--------EKFKIRIE-DPPRRKDMVFIGGAVLAE 81 (112)
Q Consensus 42 ~r~~IvL~GGss~~--------~~~~v~V~-~~~~~~~~aW~Ggsila~ 81 (112)
+...|+++||.+.- +.+..+|. .|+++++..=+|++++|.
T Consensus 239 i~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 239 VEEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHH
Confidence 34449999999974 23344454 466788877789998875
No 55
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=21.73 E-value=50 Score=22.17 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=27.0
Q ss_pred cccceeeecCCCCccccCCCCCCc---chhhhchhcCCccCcCceEEecC
Q psy4562 5 LKWSAVRVVPDRHPFGHQPRSPLI---NYQKFKIRIEDPPRRKDMVFIGG 51 (112)
Q Consensus 5 ~~~~~~~~~~~~~p~~f~p~~~gi---~~~~~sI~~c~~d~r~~IvL~GG 51 (112)
+-+.+-.++|..||..++ ..|. ..+...+..||. |++.|.
T Consensus 44 ~t~~~kg~i~~~hp~~~G--~~g~~~~~~~~~~l~~aDl-----vl~iG~ 86 (137)
T PF00205_consen 44 TTPMGKGVIPEDHPLFLG--YLGLFGSPAANEALEQADL-----VLAIGT 86 (137)
T ss_dssp EEGGGTTSSTTTSTTEEE--ESCGGSCHHHHHHHHHSSE-----EEEESS
T ss_pred ecCccccccCCCCchhcc--cCCccCCHHHHHHhcCCCE-----EEEECC
Confidence 445667789999998887 4444 334567777755 777773
Done!