RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4562
(112 letters)
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 55.7 bits (135), Expect = 2e-10
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 57 KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
K K+++ PP RK V++GG++LA + D W++ KEY+E G ++ +
Sbjct: 322 KLKVKVIAPPERKYSVWLGGSILASLSTFED-MWITKKEYEESGSQIVER 370
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 50.3 bits (121), Expect = 1e-08
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 58 FKIRIEDPP-RRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
K++I PP RK +IGG++LA + + W+S +EY+E G SV+ +
Sbjct: 316 VKVKIIAPPNERKYSAWIGGSILASLGTFQQ-MWVSKQEYEEHGSSVVER 364
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 44.2 bits (104), Expect = 2e-06
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 59 KIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
IRI PP RK FIGG++LA + + W+S +E+ E G +L +
Sbjct: 331 TIRISAPPERKFSTFIGGSILASLATFKK-IWISKQEFDEYGSVILHR 377
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 42.4 bits (100), Expect = 9e-06
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 57 KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
+K+ + PP ++G ++LA ++ W++ +EY+E G +L
Sbjct: 393 IWKVSVIPPPDPSLDAWLGASILA-SLETFQQLWITKEEYEEHGPDIL 439
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 42.1 bits (99), Expect = 1e-05
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 52 AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSV 103
+ KI++ PP RK V+IGG++L+ + W++ +EY E G S+
Sbjct: 322 TLAPSTMKIKVVAPPERKYSVWIGGSILSS-LPTFQQMWVTKEEYDESGPSI 372
Score = 33.2 bits (76), Expect = 0.014
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 34 KIRIEDPPRRKDMVFIGGAVLA 55
KI++ PP RK V+IGG++L+
Sbjct: 329 KIKVVAPPERKYSVWIGGSILS 350
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 41.6 bits (97), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52 AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
A+ KI+I PP RK V+IGG++LA + W+S +EY E G S++ +
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESGPSIVHR 373
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 34.3 bits (78), Expect = 0.007
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 53 VLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
++ + KI++ PP R+ +IGG++ + + W+ +EY E+G S++ +
Sbjct: 320 LVPSQLKIQVAAPPDRRFSAWIGGSIQC-TLSTQQPQWIKRQEYDEQGPSIVHR 372
>gnl|CDD|219571 pfam07779, Cas1_AcylT, 10 TM Acyl Transferase domain found in
Cas1p. Cas1p protein of Cryptococcus neoformans is
required for the synthesis of O-acetylated
glucuronoxylomannans, a consitutent of the capsule, and
is critical for its virulence. The multi TM domain of
the Cas1p was unified with the 10 TM Sugar
Acyltransferase superfamily. This superfamily is
comprised of members from the OatA, MdoC, OpgC, NolL and
GumG families in addition to the Cas1p family. The Cas1p
protein has a N terminal PC-Esterase domain with the
opposing Acyl esterase activity.
Length = 496
Score = 28.2 bits (63), Expect = 0.87
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 26 PLINYQKFKIRIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMK- 84
PLI Y + I P R V++ K I P + + + L +M
Sbjct: 39 PLIIYMFYYILRNAPRGRSIYVYLES----PDEKKNIIATPSSYETLLTALSKLGLIMAY 94
Query: 85 ----DRDAFWM-SNKEYQE 98
DR F+M NK Y
Sbjct: 95 FYLCDRTNFFMKENKYYSA 113
>gnl|CDD|225799 COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy
production and conversion].
Length = 148
Score = 25.4 bits (56), Expect = 6.1
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 25 SPLINYQKFKIRIEDPPRRKDMVFIGGAV---LAEKFKIRIEDPPRRKDMVFIGG-AVLA 80
SP + ++F I++ + PR D++ + GAV + E K E P K ++ +G A+
Sbjct: 31 SPRYDAERFGIKVVNSPRHADILLVTGAVTRQMREPLKKAYEAMPEPKIVIAVGACALSG 90
Query: 81 EVMKDRDAFW 90
+ KD + W
Sbjct: 91 GIFKDSYSVW 100
>gnl|CDD|239174 cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Nad11: The second
domain of the Nad11/75-kDa subunit of the NADH-quinone
oxidoreductase/respiratory complex I/NADH
dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G
subunit of alphaproteobacteria NDH-1. The NADH-quinone
oxidoreductase is the first energy-transducting complex
in the respiratory chains of many prokaryotes and
eukaryotes. Mitochondrial complex I and its bacterial
counterpart, NDH-1, function as a redox pump that uses
the redox energy to translocate H+ ions across the
membrane, resulting in a significant contribution to
energy production. The nad11 gene codes for the largest
(75 kDa) subunit of the mitochondrial NADH:ubiquinone
oxidoreductase, it constitutes the electron input part
of the enzyme, or the so-called NADH dehydrogenase
fragment. In Paracoccus denitrificans, this subunit is
encoded by the nqo3 gene, and is part of the 14 distinct
subunits constituting the 'minimal' functional enzyme.
The Nad11/Nqo3 subunit is made of two domains: the first
contains three binding sites for FeS clusters (the fer2
domain), the second domain (this CD), is of unknown
function or, as postulated, has lost an ancestral
formate dehydrogenase activity that became redundant
during the evolution of the complex I enzyme. Although
only vestigial sequence evidence remains of a
molybdopterin binding site, this protein domain belongs
to the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 375
Score = 25.7 bits (57), Expect = 6.3
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 18/62 (29%)
Query: 43 RKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVS 102
+K M+ +G L RKD G A+LA V K + + + G +
Sbjct: 219 KKPMIIVGSGAL------------ARKD----GAAILAAVAKLAKKNGVVREGWN--GFN 260
Query: 103 VL 104
VL
Sbjct: 261 VL 262
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.422
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,114,017
Number of extensions: 558786
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 26
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)