RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4562
         (112 letters)



>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
           2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
           2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
           3dxm_B* 3rse_B 2p9k_B*
          Length = 394

 Score = 68.6 bits (168), Expect = 4e-15
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390


>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
           cytoskeleton, nucleot binding, WD repeat; HET: ATP;
           3.78A {Schizosaccharomyces pombe}
          Length = 427

 Score = 63.3 bits (154), Expect = 3e-13
 Identities = 11/66 (16%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 41  PRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERG 100
             R     +     +    + +    R+++ V+ GG++LA+   +  ++  +  +Y+E G
Sbjct: 355 DERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ-TPEFGSYCHTKADYEEYG 413

Query: 101 VSVLSK 106
            S+  +
Sbjct: 414 ASIARR 419


>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
           protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
           1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
           2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
          Length = 418

 Score = 62.8 bits (153), Expect = 4e-13
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 36  RIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKE 95
           R  D   +      GG +  +   +++     ++  V+ GG++LA    +      + K+
Sbjct: 341 RTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS-TPEFYQVCHTKKD 399

Query: 96  YQERGVSVLSK 106
           Y+E G S+   
Sbjct: 400 YEEIGPSICRH 410


>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
           bistramide A, structural protein; HET: HIC ATP BID;
           1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
           PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
           1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
           1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
           ...
          Length = 375

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
             KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 324 TMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 372


>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
           structural protein; HET: ATP; 3.40A {Saccharomyces
           cerevisiae}
          Length = 498

 Score = 58.1 bits (140), Expect = 2e-11
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 54  LAEKFKIRIEDPP---RRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           +    K RI        R+   ++GG++L   +      W+  KEY+E GV  L
Sbjct: 440 ILPSLKFRILTTGHTIERQYQSWLGGSILTS-LGTFHQLWVGKKEYEEVGVERL 492


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.0 bits (59), Expect = 1.0
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 11/60 (18%)

Query: 55  AEKFKIRIE--DPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRAE 112
            E+ + R++  D   +            +  KD + +     E  E+     +K+ NR  
Sbjct: 91  REEQRKRLQELDAASKVMEQ----EWREKAKKDLEEWNQRQSEQVEK-----NKINNRIA 141


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.7 bits (58), Expect = 1.7
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 52  AVLAEKFKIRIEDPPRRKDMVF---IGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKL 107
           ++L +    R +D PR         +  +++AE ++D  A W     ++      L+ +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATW---DNWKHVNCDKLTTI 358


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0729    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,847,016
Number of extensions: 106379
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 25
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)