RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4562
         (112 letters)



>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 258

 Score = 53.2 bits (127), Expect = 3e-10
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 36  RIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKE 95
           R  D   +      GG +  +   +++     ++  V+ GG++LA    +      + K+
Sbjct: 181 RTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS-TPEFYQVCHTKKD 239

Query: 96  YQERGVSVL 104
           Y+E G S+ 
Sbjct: 240 YEEIGPSIC 248


>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 225

 Score = 46.3 bits (109), Expect = 8e-08
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++
Sbjct: 173 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIV 224


>d1e2ta_ d.3.1.5 (A:) Arylamine N-acetyltransferase {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 274

 Score = 24.9 bits (54), Expect = 2.8
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 12/51 (23%)

Query: 34  KIRIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMK 84
           ++ + D P           +L ++F + + D            A LA VM 
Sbjct: 234 QVNVPDVPSLYQ-------LLQQQFGLGVNDVKHGFTE-----AELAAVMA 272


>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 246

 Score = 23.3 bits (49), Expect = 9.5
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 45  DMVFIGGAVLAEKF 58
           D   +G A L E F
Sbjct: 225 DGFLVGNASLKESF 238


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 449,030
Number of extensions: 20305
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 8
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)