Query psy4565
Match_columns 67
No_of_seqs 144 out of 1020
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 20:17:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 99.8 1.1E-21 2.4E-26 134.6 2.8 66 1-67 120-191 (375)
2 KOG0677|consensus 99.8 5.5E-22 1.2E-26 133.2 0.5 64 2-66 122-191 (389)
3 PTZ00466 actin-like protein; P 99.8 7E-21 1.5E-25 130.9 3.6 66 1-67 126-197 (380)
4 KOG0676|consensus 99.8 4.2E-21 9.1E-26 132.4 2.1 64 1-67 119-188 (372)
5 PTZ00281 actin; Provisional 99.8 6.8E-21 1.5E-25 130.4 2.8 66 1-67 121-192 (376)
6 PTZ00004 actin-2; Provisional 99.8 2.9E-20 6.3E-25 127.3 3.3 66 1-67 121-192 (378)
7 PTZ00280 Actin-related protein 99.8 9.7E-20 2.1E-24 125.8 3.7 66 1-67 122-203 (414)
8 PF00022 Actin: Actin; InterP 99.7 3.3E-19 7.1E-24 121.1 1.8 65 1-66 114-184 (393)
9 COG5277 Actin and related prot 99.7 1.5E-18 3.2E-23 121.9 2.4 66 1-67 126-199 (444)
10 smart00268 ACTIN Actin. ACTIN 99.7 1.5E-17 3.3E-22 112.7 2.7 65 1-66 115-185 (373)
11 cd00012 ACTIN Actin; An ubiqui 99.7 3.9E-17 8.4E-22 110.8 3.0 66 1-67 115-186 (371)
12 KOG0679|consensus 99.7 2.5E-17 5.3E-22 114.0 1.9 66 1-67 126-197 (426)
13 KOG0681|consensus 99.4 7E-14 1.5E-18 100.3 2.3 65 2-67 137-211 (645)
14 KOG0678|consensus 99.4 4.7E-14 1E-18 96.8 1.2 65 1-66 126-204 (415)
15 KOG0680|consensus 99.2 6.3E-12 1.4E-16 86.3 3.4 64 2-66 114-194 (400)
16 KOG0797|consensus 98.8 2.7E-09 5.8E-14 76.8 3.5 55 11-66 263-317 (618)
17 PRK13930 rod shape-determining 98.8 2.9E-09 6.3E-14 71.4 1.8 61 3-66 121-192 (335)
18 PRK13927 rod shape-determining 98.5 5.5E-08 1.2E-12 65.4 2.4 61 2-66 116-188 (334)
19 TIGR00904 mreB cell shape dete 98.5 7.2E-08 1.6E-12 65.0 2.6 60 3-66 119-190 (333)
20 PRK13929 rod-share determining 98.2 1.2E-06 2.5E-11 59.5 2.9 52 11-66 133-190 (335)
21 PRK13928 rod shape-determining 98.2 7.7E-07 1.7E-11 60.2 1.5 60 4-66 117-187 (336)
22 TIGR01174 ftsA cell division p 96.3 0.007 1.5E-07 41.5 4.2 40 24-66 197-236 (371)
23 TIGR02529 EutJ ethanolamine ut 95.9 0.0092 2E-07 39.1 3.1 43 21-66 106-148 (239)
24 PRK15080 ethanolamine utilizat 95.4 0.014 3E-07 38.7 2.4 41 23-66 135-175 (267)
25 PRK09472 ftsA cell division pr 93.9 0.11 2.3E-06 36.5 4.1 40 24-66 205-244 (420)
26 TIGR01175 pilM type IV pilus a 93.8 0.12 2.7E-06 34.8 4.1 40 24-66 189-228 (348)
27 PF06723 MreB_Mbl: MreB/Mbl pr 93.8 0.04 8.7E-07 38.0 1.7 52 11-65 128-184 (326)
28 COG0849 ftsA Cell division ATP 93.3 0.16 3.4E-06 36.3 4.2 40 23-65 203-242 (418)
29 PRK13917 plasmid segregation p 91.1 0.32 6.8E-06 33.5 3.4 40 24-64 186-225 (344)
30 PF11104 PilM_2: Type IV pilus 90.3 0.6 1.3E-05 31.7 4.2 40 24-66 181-220 (340)
31 TIGR03739 PRTRC_D PRTRC system 90.2 0.19 4.1E-06 34.0 1.7 43 22-65 166-208 (320)
32 PF01968 Hydantoinase_A: Hydan 90.1 0.27 5.9E-06 33.1 2.4 29 19-47 73-101 (290)
33 PRK10719 eutA reactivating fac 88.7 0.34 7.3E-06 35.3 2.1 37 23-62 146-182 (475)
34 COG4972 PilM Tfp pilus assembl 87.4 0.71 1.5E-05 32.5 2.9 40 25-67 195-234 (354)
35 TIGR03123 one_C_unchar_1 proba 83.6 1.3 2.8E-05 30.7 2.8 27 22-48 127-153 (318)
36 COG1548 Predicted transcriptio 81.8 1.1 2.5E-05 30.8 2.0 23 22-44 129-151 (330)
37 COG4820 EutJ Ethanolamine util 80.3 0.52 1.1E-05 31.6 -0.1 37 13-49 130-166 (277)
38 PF02541 Ppx-GppA: Ppx/GppA ph 79.9 2.9 6.3E-05 27.6 3.4 42 21-65 110-151 (285)
39 PF06406 StbA: StbA protein; 75.6 5.6 0.00012 27.0 3.9 42 23-65 164-206 (318)
40 CHL00094 dnaK heat shock prote 70.2 5.2 0.00011 29.6 2.9 43 23-66 187-232 (621)
41 TIGR02350 prok_dnaK chaperone 69.9 5.7 0.00012 29.1 3.0 43 22-65 182-227 (595)
42 PRK00290 dnaK molecular chaper 66.0 6.8 0.00015 29.0 2.8 44 22-66 184-230 (627)
43 PF00012 HSP70: Hsp70 protein; 65.6 6.2 0.00013 28.4 2.5 44 22-66 187-233 (602)
44 PRK10854 exopolyphosphatase; P 63.5 11 0.00024 27.4 3.4 38 23-63 137-174 (513)
45 PLN03184 chloroplast Hsp70; Pr 62.9 8.6 0.00019 28.9 2.9 43 23-66 224-269 (673)
46 PTZ00400 DnaK-type molecular c 61.5 11 0.00023 28.4 3.1 43 23-66 226-271 (663)
47 PF14450 FtsA: Cell division p 61.2 20 0.00043 20.8 3.7 34 26-62 2-43 (120)
48 TIGR03706 exo_poly_only exopol 60.6 16 0.00034 24.5 3.6 39 23-64 125-163 (300)
49 PRK11031 guanosine pentaphosph 60.2 22 0.00047 25.8 4.4 37 24-63 133-169 (496)
50 TIGR01991 HscA Fe-S protein as 60.2 10 0.00022 28.1 2.8 43 23-66 181-226 (599)
51 PRK05183 hscA chaperone protei 57.3 12 0.00027 27.8 2.8 43 23-66 201-246 (616)
52 PTZ00186 heat shock 70 kDa pre 57.1 14 0.00031 27.8 3.2 42 23-65 212-256 (657)
53 PF06277 EutA: Ethanolamine ut 54.8 16 0.00035 26.8 3.0 35 23-59 143-177 (473)
54 PRK13410 molecular chaperone D 54.6 16 0.00035 27.6 3.1 42 23-65 187-231 (668)
55 PTZ00009 heat shock 70 kDa pro 53.2 18 0.00039 27.0 3.2 43 23-66 194-239 (653)
56 COG1077 MreB Actin-like ATPase 49.2 22 0.00047 25.2 2.8 47 11-59 136-187 (342)
57 PRK13411 molecular chaperone D 45.4 23 0.0005 26.6 2.7 42 23-65 186-230 (653)
58 PRK01433 hscA chaperone protei 45.0 26 0.00057 26.1 2.9 43 23-66 193-238 (595)
59 PRK11678 putative chaperone; P 41.0 61 0.0013 23.3 4.2 40 23-65 209-259 (450)
60 COG1521 Pantothenate kinase ty 35.7 15 0.00033 24.7 0.4 27 12-38 108-137 (251)
61 COG0248 GppA Exopolyphosphatas 35.7 32 0.0007 25.2 2.1 36 22-59 128-163 (492)
62 COG0145 HyuA N-methylhydantoin 34.7 34 0.00073 26.2 2.1 30 17-46 270-301 (674)
63 PF08735 DUF1786: Putative pyr 33.4 63 0.0014 21.9 3.1 26 21-46 165-190 (254)
64 PRK13333 pantothenate kinase; 32.7 21 0.00046 23.3 0.7 24 12-37 75-98 (206)
65 TIGR01319 glmL_fam conserved h 31.4 31 0.00068 25.3 1.5 25 22-46 248-272 (463)
66 COG0443 DnaK Molecular chapero 30.6 71 0.0015 23.8 3.2 53 12-65 156-216 (579)
67 PF14541 TAXi_C: Xylanase inhi 30.6 31 0.00067 20.8 1.2 20 20-39 26-45 (161)
68 PF01150 GDA1_CD39: GDA1/CD39 30.5 38 0.00083 23.8 1.8 16 22-37 7-22 (434)
69 COG1869 RbsD ABC-type ribose t 28.8 54 0.0012 20.2 2.0 15 42-56 29-43 (135)
70 PLN02962 hydroxyacylglutathion 27.3 56 0.0012 21.6 2.1 32 1-32 9-45 (251)
71 PF12500 TRSP: TRSP domain C t 27.0 7.9 0.00017 24.2 -1.9 36 29-65 85-124 (155)
72 PRK13329 pantothenate kinase; 25.9 27 0.00059 23.1 0.4 17 22-38 118-134 (249)
73 PF03309 Pan_kinase: Type III 24.9 20 0.00043 22.7 -0.4 17 22-38 119-135 (206)
74 COG0432 Uncharacterized conser 24.1 80 0.0017 19.5 2.2 24 33-56 97-120 (137)
75 COG4819 EutA Ethanolamine util 23.7 68 0.0015 23.3 2.0 35 23-59 145-179 (473)
76 TIGR00671 baf pantothenate kin 22.5 36 0.00077 22.4 0.4 16 23-38 116-131 (243)
77 KOG1386|consensus 21.9 80 0.0017 23.5 2.1 17 21-37 7-23 (501)
78 PRK13318 pantothenate kinase; 20.9 40 0.00086 22.1 0.4 17 22-38 123-139 (258)
79 TIGR00241 CoA_E_activ CoA-subs 20.1 1.7E+02 0.0036 18.9 3.2 41 24-65 92-133 (248)
No 1
>PTZ00452 actin; Provisional
Probab=99.83 E-value=1.1e-21 Score=134.60 Aligned_cols=66 Identities=27% Similarity=0.434 Sum_probs=62.4
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
++++||+|++ .+++||+|+.|+++|+|||+|++.|+++||+||++++++++|+++||++ +|+||++
T Consensus 120 ~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~-lt~~L~~ 191 (375)
T PTZ00452 120 TQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRL-CTDYLTQ 191 (375)
T ss_pred HHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchH-HHHHHHH
Confidence 4789999996 5889999999999999999999999999999999999999999999999 9999864
No 2
>KOG0677|consensus
Probab=99.83 E-value=5.5e-22 Score=133.18 Aligned_cols=64 Identities=52% Similarity=0.746 Sum_probs=61.4
Q ss_pred cccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 2 KLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 2 ~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
+.|||+|+. +|++|++|+.|..||+|||+|+++|||+|||||+.+++-.+|+|++|++ +|.||-
T Consensus 122 evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRd-iTryLi 191 (389)
T KOG0677|consen 122 EVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRD-ITRYLI 191 (389)
T ss_pred HHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchh-HHHHHH
Confidence 679999993 7999999999999999999999999999999999999999999999999 999985
No 3
>PTZ00466 actin-like protein; Provisional
Probab=99.82 E-value=7e-21 Score=130.88 Aligned_cols=66 Identities=27% Similarity=0.389 Sum_probs=62.3
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
++++||+|++ .+++||+|+.|+++|+|||+|++.|+++||+||++++++++|+++||++ +|+||++
T Consensus 126 ~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~-lt~~L~~ 197 (380)
T PTZ00466 126 AEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRD-ITTYLGY 197 (380)
T ss_pred HHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhH-HHHHHHH
Confidence 3789999996 5889999999999999999999999999999999999999999999999 9999863
No 4
>KOG0676|consensus
Probab=99.81 E-value=4.2e-21 Score=132.42 Aligned_cols=64 Identities=39% Similarity=0.665 Sum_probs=58.5
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
+|+|||.||+ .|+++ |+.|+++|+|||+|++.|+++|||+|+++++++.++++||++ +|+||++
T Consensus 119 tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~d-lt~~l~~ 188 (372)
T KOG0676|consen 119 TQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRD-LTDYLLK 188 (372)
T ss_pred HHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchh-hHHHHHH
Confidence 3789999996 35555 999999999999999999999999999999999999999999 9998863
No 5
>PTZ00281 actin; Provisional
Probab=99.81 E-value=6.8e-21 Score=130.44 Aligned_cols=66 Identities=33% Similarity=0.628 Sum_probs=62.3
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
++++||+|++ .+++||+|+.|+++|+|||+|++.|+++||+||++++++++|+++||++ +|+||++
T Consensus 121 ~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~-lt~~L~~ 192 (376)
T PTZ00281 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMMK 192 (376)
T ss_pred HHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHH-HHHHHHH
Confidence 4789999996 5889999999999999999999999999999999999999999999999 9999964
No 6
>PTZ00004 actin-2; Provisional
Probab=99.80 E-value=2.9e-20 Score=127.30 Aligned_cols=66 Identities=32% Similarity=0.617 Sum_probs=62.2
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
++++||+|++ ++++||+|+.|+++|+|||+|++.|+++||+||++++++++|+++||++ +|+||++
T Consensus 121 ~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~-lt~~L~~ 192 (378)
T PTZ00004 121 TQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRD-LTEYMMK 192 (378)
T ss_pred HHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHH-HHHHHHH
Confidence 4789999996 5889999999999999999999999999999999999999999999999 9999863
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.78 E-value=9.7e-20 Score=125.79 Aligned_cols=66 Identities=26% Similarity=0.414 Sum_probs=61.7
Q ss_pred CcccccccCc------cceeecceec----------CceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTD----------YKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY 64 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~----------g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~ 64 (67)
++++||+|++ .+++||+|+. |+++|+|||+|++.|+++||++|++++++++|+++||++ +|++
T Consensus 122 ~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~-lt~~ 200 (414)
T PTZ00280 122 AEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRD-ITNF 200 (414)
T ss_pred HHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHH-HHHH
Confidence 4789999996 5789999998 999999999999999999999999999999999999999 9999
Q ss_pred HhC
Q psy4565 65 LLS 67 (67)
Q Consensus 65 L~~ 67 (67)
|++
T Consensus 201 L~~ 203 (414)
T PTZ00280 201 IQQ 203 (414)
T ss_pred HHH
Confidence 863
No 8
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.75 E-value=3.3e-19 Score=121.13 Aligned_cols=65 Identities=25% Similarity=0.377 Sum_probs=56.9
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
++++||+|++ .+++||+|+.|+++|+|||+|++.|+++||+||++++++++++++||++ ++++|+
T Consensus 114 ~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~-lt~~l~ 184 (393)
T PF00022_consen 114 AEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDD-LTEYLK 184 (393)
T ss_dssp HHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHH-HHHHHH
T ss_pred hhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHH-HHHHHH
Confidence 3689999996 5789999999999999999999999999999999999999999999999 999986
No 9
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.72 E-value=1.5e-18 Score=121.94 Aligned_cols=66 Identities=32% Similarity=0.494 Sum_probs=62.4
Q ss_pred CcccccccCc------cceeecceecCce--eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKP--SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~--tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
++++||+|++ ++++|++|++|+. +|+|+|+|++.|||+||+||..++++++|+++||++ +|++|++
T Consensus 126 ~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~-it~~l~~ 199 (444)
T COG5277 126 TELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRD-ITDYLKK 199 (444)
T ss_pred HHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHH-HHHHHHH
Confidence 3689999996 6899999999999 999999999999999999999999999999999999 9999964
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.68 E-value=1.5e-17 Score=112.74 Aligned_cols=65 Identities=34% Similarity=0.596 Sum_probs=61.1
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
++++||.|++ .++++|+|+.|+++|+|||+|++.|+++||++|.+++++++++++||++ ++++|+
T Consensus 115 ~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~-l~~~l~ 185 (373)
T smart00268 115 LEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRD-LTDYLK 185 (373)
T ss_pred HHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHH-HHHHHH
Confidence 3689999995 5789999999999999999999999999999999999999999999999 999986
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.66 E-value=3.9e-17 Score=110.82 Aligned_cols=66 Identities=36% Similarity=0.654 Sum_probs=61.4
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
++++||.|++ .++++|+|+.|+++|+|||+|++.|+++||++|++++++++++++||++ ++++|++
T Consensus 115 ~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~-l~~~l~~ 186 (371)
T cd00012 115 TEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRD-LTRYLKE 186 (371)
T ss_pred HHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHH-HHHHHHH
Confidence 3689999995 5889999999999999999999999999999999999999999999999 9999863
No 12
>KOG0679|consensus
Probab=99.66 E-value=2.5e-17 Score=114.04 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=61.8
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
+++|||+|++ ++++++.|++||.|++|||+|+..|++.||+||+++.+++.+.++||.. |++.+++
T Consensus 126 ~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdF-l~~~~~q 197 (426)
T KOG0679|consen 126 TELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDF-LNDQCRQ 197 (426)
T ss_pred HHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHH-HHHHHHH
Confidence 4789999995 7999999999999999999999999999999999999999999999999 8887753
No 13
>KOG0681|consensus
Probab=99.41 E-value=7e-14 Score=100.32 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=58.3
Q ss_pred cccccccCc------cceeecceec----CceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 2 KLDLEKVCP------VQTYVAYGTD----YKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 2 ~~~fe~~~~------~~~~la~~~~----g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
+++||+|++ +++++|+|.+ +..+|+||++|+..||++||.||.++...++|+|+||.+ .++||.+
T Consensus 137 elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~q-a~dYL~~ 211 (645)
T KOG0681|consen 137 ELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQ-AGDYLSR 211 (645)
T ss_pred HHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcch-HHHHHHH
Confidence 689999996 5888999853 234799999999999999999999999999999999999 9999963
No 14
>KOG0678|consensus
Probab=99.41 E-value=4.7e-14 Score=96.85 Aligned_cols=65 Identities=29% Similarity=0.464 Sum_probs=58.2
Q ss_pred CcccccccCc------cceeecceecC--------ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDY--------KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g--------~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
.+||||.||+ +|++|||-++. ..+|+|+|+|++.||++||-||+++..++++++++|++ +|-+.+
T Consensus 126 aeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrd-iT~fiQ 204 (415)
T KOG0678|consen 126 AEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRD-ITYFIQ 204 (415)
T ss_pred HHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCc-hhHHHH
Confidence 3689999996 68888877664 47899999999999999999999999999999999999 998775
No 15
>KOG0680|consensus
Probab=99.23 E-value=6.3e-12 Score=86.33 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=52.5
Q ss_pred cccccccCc------cceeeccee----cC-------ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565 2 KLDLEKVCP------VQTYVAYGT----DY-------KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY 64 (67)
Q Consensus 2 ~~~fe~~~~------~~~~la~~~----~g-------~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~ 64 (67)
+++||.|+. .-+.|+.+. .. ...++|||+|++.|||+|+.+|.+...+++|+|+||+. +|.+
T Consensus 114 eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~-LTn~ 192 (400)
T KOG0680|consen 114 EILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKA-LTNL 192 (400)
T ss_pred HHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHH-HHHH
Confidence 689999995 223344433 11 23799999999999999999999999999999999999 9999
Q ss_pred Hh
Q psy4565 65 LL 66 (67)
Q Consensus 65 L~ 66 (67)
|+
T Consensus 193 LK 194 (400)
T KOG0680|consen 193 LK 194 (400)
T ss_pred HH
Confidence 97
No 16
>KOG0797|consensus
Probab=98.84 E-value=2.7e-09 Score=76.78 Aligned_cols=55 Identities=25% Similarity=0.213 Sum_probs=51.4
Q ss_pred cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 11 VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 11 ~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
.+++.+.|++|.++++|||+|+..|+|+.|-||..++++-.++++||.| ||+.+.
T Consensus 263 QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdD-itr~f~ 317 (618)
T KOG0797|consen 263 QESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDD-ITRCFL 317 (618)
T ss_pred hhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCch-HHHHHH
Confidence 3568899999999999999999999999999999999999999999999 998764
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=98.77 E-value=2.9e-09 Score=71.39 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=50.9
Q ss_pred ccccccCc------cceeecceecCc-----eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 3 LDLEKVCP------VQTYVAYGTDYK-----PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 3 ~~fe~~~~------~~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
-+||++++ .++++|+++.|. ..++|+|+|++.|+++|+.+|.++. ..+.++||++ ++++|.
T Consensus 121 ~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~-id~~l~ 192 (335)
T PRK13930 121 EAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDE-MDEAIV 192 (335)
T ss_pred HHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHH-HHHHHH
Confidence 35777764 477888888876 4689999999999999999998875 5678999999 999885
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.52 E-value=5.5e-08 Score=65.36 Aligned_cols=61 Identities=8% Similarity=0.096 Sum_probs=48.6
Q ss_pred cccccccCc------cceeecceecCc-----eeEEEEecCCceeEEeee-ccceecccceEEEeccchHHHHHHHh
Q psy4565 2 KLDLEKVCP------VQTYVAYGTDYK-----PSLVITFSGDGVTHICPV-YEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 2 ~~~fe~~~~------~~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv-~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
+.+||.+++ .++++|+++.|. ..++|+|+|.+.|+++|+ ++|....+. .++||++ ++++|.
T Consensus 116 ~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~-id~~l~ 188 (334)
T PRK13927 116 RESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDK-FDEAII 188 (334)
T ss_pred HHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHH-HHHHHH
Confidence 456677664 478888888776 457999999999999999 888776654 4799999 999885
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.50 E-value=7.2e-08 Score=65.03 Aligned_cols=60 Identities=8% Similarity=0.105 Sum_probs=48.6
Q ss_pred ccccccCc------cceeecceecCc-----eeEEEEecCCceeEEeee-ccceecccceEEEeccchHHHHHHHh
Q psy4565 3 LDLEKVCP------VQTYVAYGTDYK-----PSLVITFSGDGVTHICPV-YEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 3 ~~fe~~~~------~~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv-~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
.+||.+++ .++++|+|+.|. ..++|+|+|.+.|+++|+ ++|...... .++||++ +++.|.
T Consensus 119 ~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~d-id~~l~ 190 (333)
T TIGR00904 119 ESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDE-FDEAII 190 (333)
T ss_pred HHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHH-HHHHHH
Confidence 35677664 578888888876 678999999999999999 787776654 4799999 999874
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.20 E-value=1.2e-06 Score=59.54 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=41.5
Q ss_pred cceeecceecC-----ceeEEEEecCCceeEEeee-ccceecccceEEEeccchHHHHHHHh
Q psy4565 11 VQTYVAYGTDY-----KPSLVITFSGDGVTHICPV-YEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 11 ~~~~la~~~~g-----~~tglvvd~G~~~t~i~Pv-~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
.++++|+++.| ...++|+|+|.+.|+++|+ ++|.... ..+++||++ ++++|.
T Consensus 133 ~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~---~~~~~GG~~-id~~l~ 190 (335)
T PRK13929 133 EEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSC---HSIRIGGDQ-LDEDIV 190 (335)
T ss_pred cCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEe---cCcCCHHHH-HHHHHH
Confidence 47788888776 4679999999999999999 6665543 346799999 998875
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.17 E-value=7.7e-07 Score=60.17 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=47.9
Q ss_pred cccccCc------cceeecceecCc-----eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 4 DLEKVCP------VQTYVAYGTDYK-----PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 4 ~fe~~~~------~~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
+||++++ .+++.|+++.|. ...+|+|+|.+.|.+.++..|..+.. ..+++||++ +++.|.
T Consensus 117 a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~d-id~~i~ 187 (336)
T PRK13928 117 AAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDK-FDEAII 187 (336)
T ss_pred HHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHH-HHHHHH
Confidence 4555553 577888888775 56899999999999999999876654 378999999 998874
No 22
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=96.32 E-value=0.007 Score=41.49 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=34.1
Q ss_pred eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
.-+|+|+|.+.|.++.+.+|.+.. .+.+++||++ +|+-+.
T Consensus 197 ~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~-it~~i~ 236 (371)
T TIGR01174 197 GVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNH-ITKDIA 236 (371)
T ss_pred CEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHH-HHHHHH
Confidence 468999999999999999987654 5679999999 998764
No 23
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=95.91 E-value=0.0092 Score=39.05 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=34.1
Q ss_pred CceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 21 YKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 21 g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
+....+|+|+|.+.|.+.=+.+|.+.. .+.+++||++ +|+.+.
T Consensus 106 ~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~-it~~Ia 148 (239)
T TIGR02529 106 QIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTH-MSLVLA 148 (239)
T ss_pred cCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHH-HHHHHH
Confidence 334569999999999988777887665 5577899999 998764
No 24
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=95.35 E-value=0.014 Score=38.75 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=33.4
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
..++++|+|.+.|.+.=+.+|.+... +.+++||++ +|+-+.
T Consensus 135 ~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~-it~~Ia 175 (267)
T PRK15080 135 DNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTH-MSLVLA 175 (267)
T ss_pred CCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHH-HHHHHH
Confidence 44799999999999887778876653 567999999 998764
No 25
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=93.93 E-value=0.11 Score=36.54 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=33.3
Q ss_pred eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
..+++|+|.+.|.+.=+.+|.+. ....+++||.+ +|+-+.
T Consensus 205 gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~-it~dIa 244 (420)
T PRK09472 205 GVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNV-VTSDIA 244 (420)
T ss_pred CeEEEEeCCCceEEEEEECCEEE--EEeeeechHHH-HHHHHH
Confidence 47899999999999988888655 45689999998 888763
No 26
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=93.82 E-value=0.12 Score=34.79 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=34.0
Q ss_pred eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
..++||+|++.|.++-+.+|.+.. .+.+++||.+ +|+-+.
T Consensus 189 ~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~G~~~-i~~~i~ 228 (348)
T TIGR01175 189 DAALVDIGATSSTLNLLHPGRMLF--TREVPFGTRQ-LTSELS 228 (348)
T ss_pred eEEEEEECCCcEEEEEEECCeEEE--EEEeechHHH-HHHHHH
Confidence 488999999999999999997765 5689999998 887653
No 27
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=93.76 E-value=0.04 Score=37.99 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=36.5
Q ss_pred cceeecceecCc----e-eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565 11 VQTYVAYGTDYK----P-SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 11 ~~~~la~~~~g~----~-tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L 65 (67)
.+++.++++.|. + ..+|||+|.+.|.++=+-.|-.+. .+.+.+||.+ +.+-+
T Consensus 128 ~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~~-~DeaI 184 (326)
T PF06723_consen 128 EEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGDD-IDEAI 184 (326)
T ss_dssp EHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHH-HHHHH
T ss_pred cchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCcc-hhHHH
Confidence 467788888774 2 469999999999999887777654 5578899987 66654
No 28
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=93.35 E-value=0.16 Score=36.32 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=33.7
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L 65 (67)
...++||+|.+.|.+.-..+|.+.... .+++||++ +|.=+
T Consensus 203 lGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvgG~~-vT~DI 242 (418)
T COG0849 203 LGVALIDIGGGTTDIAIYKNGALRYTG--VIPVGGDH-VTKDI 242 (418)
T ss_pred cCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeCccH-HHHHH
Confidence 557899999999999999999776544 89999998 88744
No 29
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=91.13 E-value=0.32 Score=33.48 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=33.4
Q ss_pred eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565 24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY 64 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~ 64 (67)
.-+|||+|+++|.++-+-++.+....+..++.|..+ +-+.
T Consensus 186 ~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~-~~~~ 225 (344)
T PRK13917 186 KVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTID-VYKR 225 (344)
T ss_pred cEEEEEcCCCcEEEEEEeCcEEcccccccccchHHH-HHHH
Confidence 459999999999999988888888888889999876 5443
No 30
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=90.28 E-value=0.6 Score=31.74 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=30.3
Q ss_pred eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
+-.+||+|+..|+++=+.+|.++. .+.+++||++ +++-+.
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~-l~~~i~ 220 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGND-LTEAIA 220 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHH-HHHHHH
T ss_pred eEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHH-HHHHHH
Confidence 458999999999999999998774 5578999998 887553
No 31
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=90.20 E-value=0.19 Score=33.99 Aligned_cols=43 Identities=14% Similarity=-0.044 Sum_probs=33.1
Q ss_pred ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565 22 KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L 65 (67)
...-+|||+|+.+|.++-+-++.+....+...+.|-.+ +.+-+
T Consensus 166 ~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~-~~~~I 208 (320)
T TIGR03739 166 KEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSD-IYRLL 208 (320)
T ss_pred cCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHH-HHHHH
Confidence 34569999999999999887777777777778888766 55443
No 32
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=90.12 E-value=0.27 Score=33.09 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=21.7
Q ss_pred ecCceeEEEEecCCceeEEeeeccceecc
Q psy4565 19 TDYKPSLVITFSGDGVTHICPVYEQFALP 47 (67)
Q Consensus 19 ~~g~~tglvvd~G~~~t~i~Pv~~G~~l~ 47 (67)
..+..+.+++|+|..+|.+.+|.+|.+..
T Consensus 73 ~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 73 LTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp -HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred cCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 45778999999999999999999999863
No 33
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=88.71 E-value=0.34 Score=35.28 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=31.2
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHIT 62 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt 62 (67)
...++||+|.+.|+++=..+|..... ..+++||++ +|
T Consensus 146 ~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~-IT 182 (475)
T PRK10719 146 TRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRL-IE 182 (475)
T ss_pred CceEEEEeCCCceEEEEEECCEEEEE--EEEecccce-EE
Confidence 55788999999999999999987654 478999987 65
No 34
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.36 E-value=0.71 Score=32.46 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=34.2
Q ss_pred EEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 25 LVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 25 glvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
..|+|+|+..|.++-+.+|+++.. +..++||++ +|+-+++
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Q-lt~~i~r 234 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQ-LTQEIQR 234 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHH-HHHHHHH
Confidence 358999999999999999998875 478999999 8987653
No 35
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=83.63 E-value=1.3 Score=30.66 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=24.6
Q ss_pred ceeEEEEecCCceeEEeeeccceeccc
Q psy4565 22 KPSLVITFSGDGVTHICPVYEQFALPH 48 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~Pv~~G~~l~~ 48 (67)
...++.+|+|..+|.++||.+|.+...
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CCCEEEEEcCccceeeEEecCCEeeee
Confidence 678999999999999999999998754
No 36
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=81.79 E-value=1.1 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.7
Q ss_pred ceeEEEEecCCceeEEeeeccce
Q psy4565 22 KPSLVITFSGDGVTHICPVYEQF 44 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~Pv~~G~ 44 (67)
..+.+-||.|...|.++||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 35699999999999999999996
No 37
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=80.31 E-value=0.52 Score=31.55 Aligned_cols=37 Identities=16% Similarity=-0.068 Sum_probs=30.5
Q ss_pred eeecceecCceeEEEEecCCceeEEeeeccceecccc
Q psy4565 13 TYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHL 49 (67)
Q Consensus 13 ~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~ 49 (67)
+..+.+-.+...|.|||+|.+.|-|.-+-+|.++..+
T Consensus 130 PTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~A 166 (277)
T COG4820 130 PTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSA 166 (277)
T ss_pred chhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEec
Confidence 4455666678999999999999999999999988544
No 38
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=79.92 E-value=2.9 Score=27.63 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=31.1
Q ss_pred CceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565 21 YKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 21 g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L 65 (67)
...+++++|+|.++|.++-+-++.+. ....+++|.-. +++-+
T Consensus 110 ~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vr-l~e~~ 151 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFENGKVV--FSQSLPLGAVR-LTERF 151 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEETTEEE--EEEEES--HHH-HHHHH
T ss_pred ccCCEEEEEECCCceEEEEEECCeee--EeeeeehHHHH-HHHHH
Confidence 46789999999999999998787654 34578888876 66543
No 39
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=75.60 E-value=5.6 Score=26.99 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=26.4
Q ss_pred eeEEEEecCCceeEEeeeccceecccceE-EEeccchHHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTR-RLDIAGESHITRYL 65 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~-~~~~gG~~~lt~~L 65 (67)
.+-+|||+|..++.++-|..+.+...... ..++|-.. +.+-+
T Consensus 164 ~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~-~~~~I 206 (318)
T PF06406_consen 164 ESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSD-LYDAI 206 (318)
T ss_dssp SEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHH-HHHHH
T ss_pred CcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHH-HHHHH
Confidence 56899999999999998866655444433 34667666 55544
No 40
>CHL00094 dnaK heat shock protein 70
Probab=70.25 E-value=5.2 Score=29.62 Aligned_cols=43 Identities=7% Similarity=0.163 Sum_probs=28.1
Q ss_pred eeEEEEecCCceeEEeeeccceec---ccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFAL---PHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l---~~~~~~~~~gG~~~lt~~L~ 66 (67)
..-+|+|+|.+.+.+.-+-.+... .......++||.+ +++.|.
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d-~D~~l~ 232 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDD-FDKKIV 232 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHH-HHHHHH
Confidence 457999999999998755322111 1122346799998 887653
No 41
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=69.93 E-value=5.7 Score=29.09 Aligned_cols=43 Identities=7% Similarity=0.168 Sum_probs=27.3
Q ss_pred ceeEEEEecCCceeEEeee--cccee-cccceEEEeccchHHHHHHH
Q psy4565 22 KPSLVITFSGDGVTHICPV--YEQFA-LPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~Pv--~~G~~-l~~~~~~~~~gG~~~lt~~L 65 (67)
...-+|+|+|.+.+.+.-+ .+|.. +.......++||.+ +++.|
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d-~D~~l 227 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDD-FDQRI 227 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchh-HHHHH
Confidence 3567999999999988654 22211 11112235789998 88765
No 42
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=66.02 E-value=6.8 Score=28.99 Aligned_cols=44 Identities=7% Similarity=0.156 Sum_probs=27.8
Q ss_pred ceeEEEEecCCceeEEeeecc--cee-cccceEEEeccchHHHHHHHh
Q psy4565 22 KPSLVITFSGDGVTHICPVYE--QFA-LPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~Pv~~--G~~-l~~~~~~~~~gG~~~lt~~L~ 66 (67)
...-+|+|+|.+.+.+.-+-- +.. +.......++||.+ +++-|.
T Consensus 184 ~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d-~D~~l~ 230 (627)
T PRK00290 184 DEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDD-FDQRII 230 (627)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHH-HHHHHH
Confidence 366899999999998865422 211 11112235789998 877653
No 43
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=65.57 E-value=6.2 Score=28.42 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=29.0
Q ss_pred ceeEEEEecCCceeEEeee--ccceec-ccceEEEeccchHHHHHHHh
Q psy4565 22 KPSLVITFSGDGVTHICPV--YEQFAL-PHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~Pv--~~G~~l-~~~~~~~~~gG~~~lt~~L~ 66 (67)
...-+|+|+|.+.+.+.-+ -+|..- .......++||++ +++.|.
T Consensus 187 ~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~-~D~~l~ 233 (602)
T PF00012_consen 187 GKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRD-FDEALA 233 (602)
T ss_dssp EEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHH-HHHHHH
T ss_pred ccceeccccccceEeeeehhcccccccccccccccccccce-ecceee
Confidence 3578999999999877644 344322 1222345689998 887664
No 44
>PRK10854 exopolyphosphatase; Provisional
Probab=63.46 E-value=11 Score=27.38 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=28.2
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITR 63 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~ 63 (67)
..++|+|+|.++|.++-+-++.+.. ...+++|.-. +++
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~lG~vr-l~e 174 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVS-FAQ 174 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeE--eEEEecceee-HHh
Confidence 4589999999999999887765443 3355787766 565
No 45
>PLN03184 chloroplast Hsp70; Provisional
Probab=62.89 E-value=8.6 Score=28.91 Aligned_cols=43 Identities=7% Similarity=0.221 Sum_probs=27.5
Q ss_pred eeEEEEecCCceeEEeeec--ccee-cccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPVY--EQFA-LPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~--~G~~-l~~~~~~~~~gG~~~lt~~L~ 66 (67)
..-+|+|+|.+.+.+.-+- +|.. +.....-.++||.+ +++.|.
T Consensus 224 ~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~d-fD~~L~ 269 (673)
T PLN03184 224 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD-FDKRIV 269 (673)
T ss_pred CEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHH-HHHHHH
Confidence 4679999999999886542 2211 11112235789998 887764
No 46
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=61.50 E-value=11 Score=28.36 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=28.4
Q ss_pred eeEEEEecCCceeEEeee--ccceeccc-ceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPV--YEQFALPH-LTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv--~~G~~l~~-~~~~~~~gG~~~lt~~L~ 66 (67)
..-+|+|+|.+.+.+.-+ .+|..--. ...-.++||.+ +++.|.
T Consensus 226 ~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d-~D~~l~ 271 (663)
T PTZ00400 226 KTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGED-FDQRIL 271 (663)
T ss_pred cEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHH-HHHHHH
Confidence 467999999999988743 24432211 22335799998 877663
No 47
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=61.25 E-value=20 Score=20.77 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=22.1
Q ss_pred EEEecCCceeEEeeeccceecccceEEEecc--------chHHHH
Q psy4565 26 VITFSGDGVTHICPVYEQFALPHLTRRLDIA--------GESHIT 62 (67)
Q Consensus 26 lvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~g--------G~~~lt 62 (67)
+++|+|.+.+.++=...+..- ....+++| +.+ ++
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~-It 43 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGH-IT 43 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHH-HH
T ss_pred EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCE-EE
Confidence 589999999988765554332 36678888 777 77
No 48
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=60.60 E-value=16 Score=24.54 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=29.0
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY 64 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~ 64 (67)
..++++|+|.++|.++-+-++.+. ....+++|--. +++.
T Consensus 125 ~~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~vr-l~e~ 163 (300)
T TIGR03706 125 ADGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCVR-LTEQ 163 (300)
T ss_pred CCcEEEEecCCeEEEEEecCCCEe--EEEEEccceEE-hHHh
Confidence 347999999999999987666543 45578888766 5553
No 49
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=60.23 E-value=22 Score=25.79 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=28.8
Q ss_pred eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHH
Q psy4565 24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITR 63 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~ 63 (67)
.++|+|+|.++|.++-+-++.+. ....+++|.-. +++
T Consensus 133 ~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vr-l~e 169 (496)
T PRK11031 133 QRLVVDIGGASTELVTGTGAQAT--SLFSLSMGCVT-WLE 169 (496)
T ss_pred CEEEEEecCCeeeEEEecCCcee--eeeEEeccchH-HHH
Confidence 58999999999999987666543 45688898866 554
No 50
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=60.16 E-value=10 Score=28.06 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=27.1
Q ss_pred eeEEEEecCCceeEEeee--cccee-cccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPV--YEQFA-LPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv--~~G~~-l~~~~~~~~~gG~~~lt~~L~ 66 (67)
..-+|+|+|.+++.+.-+ .+|.. +.....-..+||.+ +++.|.
T Consensus 181 ~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d-~D~~l~ 226 (599)
T TIGR01991 181 GIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDD-FDHALA 226 (599)
T ss_pred CEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHH-HHHHHH
Confidence 457999999999988643 23321 11111224789998 887663
No 51
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=57.33 E-value=12 Score=27.76 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=26.9
Q ss_pred eeEEEEecCCceeEEeeec--ccee-cccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPVY--EQFA-LPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~--~G~~-l~~~~~~~~~gG~~~lt~~L~ 66 (67)
..-+|+|+|.+++.+.-+- .|.. +.....-..+||.+ +++-|.
T Consensus 201 ~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d-~D~~l~ 246 (616)
T PRK05183 201 GVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDD-FDHLLA 246 (616)
T ss_pred CEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHH-HHHHHH
Confidence 4568999999999886542 2321 11112235689998 877663
No 52
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=57.10 E-value=14 Score=27.79 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=27.2
Q ss_pred eeEEEEecCCceeEEeee--ccceecccc-eEEEeccchHHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPV--YEQFALPHL-TRRLDIAGESHITRYL 65 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv--~~G~~l~~~-~~~~~~gG~~~lt~~L 65 (67)
..-+|+|+|.+++.+.=+ .+|..--.+ ..-.++||.+ +++.|
T Consensus 212 ~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~D-fD~~l 256 (657)
T PTZ00186 212 SLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGED-FDLAL 256 (657)
T ss_pred CEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchh-HHHHH
Confidence 467999999999987643 244322112 2245799998 86554
No 53
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=54.77 E-value=16 Score=26.84 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=28.6
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGES 59 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~ 59 (67)
.+-+=+|+|.++|.++=+-+|.++..+ -+++|||.
T Consensus 143 ~~V~NiDIGGGTtN~avf~~G~v~~T~--cl~IGGRL 177 (473)
T PF06277_consen 143 TVVANIDIGGGTTNIAVFDNGEVIDTA--CLDIGGRL 177 (473)
T ss_pred CeEEEEEeCCCceeEEEEECCEEEEEE--EEeeccEE
Confidence 445568899999999999999888765 67889873
No 54
>PRK13410 molecular chaperone DnaK; Provisional
Probab=54.58 E-value=16 Score=27.57 Aligned_cols=42 Identities=7% Similarity=0.176 Sum_probs=26.8
Q ss_pred eeEEEEecCCceeEEeee--cccee-cccceEEEeccchHHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPV--YEQFA-LPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv--~~G~~-l~~~~~~~~~gG~~~lt~~L 65 (67)
..-+|+|+|.+.+.+.-+ .+|.. +.....-.++||.+ +++-|
T Consensus 187 ~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~d-fD~~l 231 (668)
T PRK13410 187 QTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGND-FDKRI 231 (668)
T ss_pred CEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhH-HHHHH
Confidence 468999999999988644 23321 11112235689998 87755
No 55
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=53.16 E-value=18 Score=27.05 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=27.5
Q ss_pred eeEEEEecCCceeEEeee--ccceecccc-eEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPV--YEQFALPHL-TRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv--~~G~~l~~~-~~~~~~gG~~~lt~~L~ 66 (67)
..-+|+|+|.+.+.+.=+ .+|..--.+ ....++||++ +++.|.
T Consensus 194 ~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d-~D~~l~ 239 (653)
T PTZ00009 194 KNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGED-FDNRLV 239 (653)
T ss_pred CEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHH-HHHHHH
Confidence 468999999999987643 233221111 1235799998 877653
No 56
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=49.19 E-value=22 Score=25.15 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=31.1
Q ss_pred cceeecceecC----cee-EEEEecCCceeEEeeeccceecccceEEEeccchH
Q psy4565 11 VQTYVAYGTDY----KPS-LVITFSGDGVTHICPVYEQFALPHLTRRLDIAGES 59 (67)
Q Consensus 11 ~~~~la~~~~g----~~t-glvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~ 59 (67)
..+..|+.+.| .++ .+|+|+|.++|.+.-+--|-..... .+-+||+.
T Consensus 136 eEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~~--Sirv~GD~ 187 (342)
T COG1077 136 EEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSSS--SVRVGGDK 187 (342)
T ss_pred ccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEEe--eEEEecch
Confidence 34555566555 345 8999999999999876555444433 45567864
No 57
>PRK13411 molecular chaperone DnaK; Provisional
Probab=45.42 E-value=23 Score=26.55 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=25.8
Q ss_pred eeEEEEecCCceeEEeee--cccee-cccceEEEeccchHHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPV--YEQFA-LPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv--~~G~~-l~~~~~~~~~gG~~~lt~~L 65 (67)
..-+|+|+|.+.+.+.=+ -+|.. +.....-..+||.+ +++.|
T Consensus 186 ~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~d-fD~~l 230 (653)
T PRK13411 186 QLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDD-FDNCI 230 (653)
T ss_pred CEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHH-HHHHH
Confidence 457999999999987633 22211 11112234689998 87765
No 58
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=44.97 E-value=26 Score=26.07 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=26.2
Q ss_pred eeEEEEecCCceeEEeee--ccceec-ccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPV--YEQFAL-PHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv--~~G~~l-~~~~~~~~~gG~~~lt~~L~ 66 (67)
..-+|+|.|.+++.+.-+ .+|..- .....-..+||.+ +++-|.
T Consensus 193 ~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d-~D~~l~ 238 (595)
T PRK01433 193 GCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGND-IDVVIT 238 (595)
T ss_pred CEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHH-HHHHHH
Confidence 346899999999887644 233211 1111224689998 876653
No 59
>PRK11678 putative chaperone; Provisional
Probab=40.98 E-value=61 Score=23.33 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=25.3
Q ss_pred eeEEEEecCCceeEEeeec-cc----------eecccceEEEeccchHHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVY-EQ----------FALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~-~G----------~~l~~~~~~~~~gG~~~lt~~L 65 (67)
..-+|+|.|.+++.+.=+- ++ .++...- ..+||.+ ++..|
T Consensus 209 ~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G--~~lGG~D-fD~~L 259 (450)
T PRK11678 209 KRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG--QRIGGND-LDIAL 259 (450)
T ss_pred CeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC--CCCChHH-HHHHH
Confidence 5689999999998775431 11 1111111 2599998 87766
No 60
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=35.71 E-value=15 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=16.9
Q ss_pred ceeecceecC---ceeEEEEecCCceeEEe
Q psy4565 12 QTYVAYGTDY---KPSLVITFSGDGVTHIC 38 (67)
Q Consensus 12 ~~~la~~~~g---~~tglvvd~G~~~t~i~ 38 (67)
|-.+++++.. ...++|||+|...|--+
T Consensus 108 DR~~n~vaA~~~~~~~~vVVD~GTA~Tid~ 137 (251)
T COG1521 108 DRIANAVAAYHKYGKAVVVVDFGTATTIDL 137 (251)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCeEEEEE
Confidence 3334444432 34479999999977554
No 61
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=35.66 E-value=32 Score=25.25 Aligned_cols=36 Identities=17% Similarity=-0.013 Sum_probs=25.1
Q ss_pred ceeEEEEecCCceeEEeeeccceecccceEEEeccchH
Q psy4565 22 KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGES 59 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~ 59 (67)
...++|+|+|.++|-++=+-+.. +.....+++|.-.
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~~--~~~~~Sl~~G~v~ 163 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNFE--IGLLISLPLGCVR 163 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCCc--cceeEEeecceEE
Confidence 67899999999999998664322 2234566666544
No 62
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.73 E-value=34 Score=26.18 Aligned_cols=30 Identities=7% Similarity=-0.105 Sum_probs=24.1
Q ss_pred ceecCcee--EEEEecCCceeEEeeeccceec
Q psy4565 17 YGTDYKPS--LVITFSGDGVTHICPVYEQFAL 46 (67)
Q Consensus 17 ~~~~g~~t--glvvd~G~~~t~i~Pv~~G~~l 46 (67)
.|-+|+.. .+++|+|-.+|.+.-+.+|.+.
T Consensus 270 a~ltg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 270 AYLTGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred HHhcccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 44446666 9999999999999988877665
No 63
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=33.36 E-value=63 Score=21.91 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.4
Q ss_pred CceeEEEEecCCceeEEeeeccceec
Q psy4565 21 YKPSLVITFSGDGVTHICPVYEQFAL 46 (67)
Q Consensus 21 g~~tglvvd~G~~~t~i~Pv~~G~~l 46 (67)
.....++||+|.+.|...-|.+|.+.
T Consensus 165 ~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 165 SREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 46789999999999999999888764
No 64
>PRK13333 pantothenate kinase; Reviewed
Probab=32.67 E-value=21 Score=23.26 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=17.4
Q ss_pred ceeecceecCceeEEEEecCCceeEE
Q psy4565 12 QTYVAYGTDYKPSLVITFSGDGVTHI 37 (67)
Q Consensus 12 ~~~la~~~~g~~tglvvd~G~~~t~i 37 (67)
|-.+++++. ..++|||+|...|--
T Consensus 75 DR~~a~~aa--~~~lVIDaGTAiTiD 98 (206)
T PRK13333 75 DRIAACYAI--EDGVVVDAGSAITVD 98 (206)
T ss_pred HHHHHhccC--CCeEEEEcCCceEEE
Confidence 444555553 579999999998765
No 65
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=31.43 E-value=31 Score=25.31 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=21.8
Q ss_pred ceeEEEEecCCceeEEeeeccceec
Q psy4565 22 KPSLVITFSGDGVTHICPVYEQFAL 46 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~Pv~~G~~l 46 (67)
...-++||+|..+|.+-.+.+|.+-
T Consensus 248 ~g~ll~VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 248 IGDFILIDIGGATTDVHSAAAGELS 272 (463)
T ss_pred cCCEEEEEcCccccchhhccCCCcc
Confidence 4567999999999999999999666
No 66
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=30.62 E-value=71 Score=23.82 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=33.4
Q ss_pred ceeecceecC-----ceeEEEEecCCceeEEeee--ccce-ecccceEEEeccchHHHHHHH
Q psy4565 12 QTYVAYGTDY-----KPSLVITFSGDGVTHICPV--YEQF-ALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 12 ~~~la~~~~g-----~~tglvvd~G~~~t~i~Pv--~~G~-~l~~~~~~~~~gG~~~lt~~L 65 (67)
+|..|+++.| ...-+|+|.|.+.+.+.=+ -+|. .+........+||.+ +++.|
T Consensus 156 EPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGdd-fD~~l 216 (579)
T COG0443 156 EPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDD-FDNAL 216 (579)
T ss_pred chHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchh-HHHHH
Confidence 4455554443 3578999999999887643 3341 223345567789987 76654
No 67
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=30.62 E-value=31 Score=20.77 Aligned_cols=20 Identities=25% Similarity=0.104 Sum_probs=15.9
Q ss_pred cCceeEEEEecCCceeEEee
Q psy4565 20 DYKPSLVITFSGDGVTHICP 39 (67)
Q Consensus 20 ~g~~tglvvd~G~~~t~i~P 39 (67)
.+...++++|+|...|+..|
T Consensus 26 ~~~~g~~iiDSGT~~T~L~~ 45 (161)
T PF14541_consen 26 SDGSGGTIIDSGTTYTYLPP 45 (161)
T ss_dssp TTSTCSEEE-SSSSSEEEEH
T ss_pred cCCCCCEEEECCCCccCCcH
Confidence 44578999999999999884
No 68
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=30.47 E-value=38 Score=23.77 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=13.5
Q ss_pred ceeEEEEecCCceeEE
Q psy4565 22 KPSLVITFSGDGVTHI 37 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i 37 (67)
..-++|||.|...|++
T Consensus 7 ~~y~vviDAGSsgsR~ 22 (434)
T PF01150_consen 7 RKYGVVIDAGSSGSRV 22 (434)
T ss_dssp EEEEEEEEEESSEEEE
T ss_pred ccEEEEEEcCCCCceE
Confidence 3569999999998877
No 69
>COG1869 RbsD ABC-type ribose transport system, auxiliary component [Carbohydrate transport and metabolism]
Probab=28.80 E-value=54 Score=20.22 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=13.4
Q ss_pred cceecccceEEEecc
Q psy4565 42 EQFALPHLTRRLDIA 56 (67)
Q Consensus 42 ~G~~l~~~~~~~~~g 56 (67)
-|.|+|....|+|++
T Consensus 29 aGlPIP~~v~rIDLa 43 (135)
T COG1869 29 AGLPIPKGVKRIDLA 43 (135)
T ss_pred CCCCCCCCccEEEEE
Confidence 578999999999986
No 70
>PLN02962 hydroxyacylglutathione hydrolase
Probab=27.33 E-value=56 Score=21.65 Aligned_cols=32 Identities=9% Similarity=-0.067 Sum_probs=20.0
Q ss_pred CcccccccCccceeecce---ecC--ceeEEEEecCC
Q psy4565 1 MKLDLEKVCPVQTYVAYG---TDY--KPSLVITFSGD 32 (67)
Q Consensus 1 ~~~~fe~~~~~~~~la~~---~~g--~~tglvvd~G~ 32 (67)
+||.|.+|.-...---.| ..+ ...+++||.|.
T Consensus 9 ~~m~~~~~~~~~~~~~~Yll~d~~~~~~~avlIDP~~ 45 (251)
T PLN02962 9 SKLLFRQLFEKESSTYTYLLADVSHPDKPALLIDPVD 45 (251)
T ss_pred CceEEEEeecCCceeEEEEEEeCCCCCCEEEEECCCC
Confidence 578999998643322222 222 34689999985
No 71
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=26.99 E-value=7.9 Score=24.24 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=26.1
Q ss_pred ecCCceeEEeeecc----ceecccceEEEeccchHHHHHHH
Q psy4565 29 FSGDGVTHICPVYE----QFALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 29 d~G~~~t~i~Pv~~----G~~l~~~~~~~~~gG~~~lt~~L 65 (67)
++-+..|+..||+- |+++.....-.+--+.. +.+|+
T Consensus 85 ~V~~qSTTRSPI~~~d~~gyaI~~~~~F~~~~~~~-~~~yl 124 (155)
T PF12500_consen 85 DVRYQSTTRSPILPVDDPGYAIRSGFSFPDPYDPG-IPNYL 124 (155)
T ss_pred ceEEeCCCCCCceecCCCCCccceeeEecCCCCCC-CcceE
Confidence 66678899999988 99998877665544444 55554
No 72
>PRK13329 pantothenate kinase; Reviewed
Probab=25.93 E-value=27 Score=23.13 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=13.5
Q ss_pred ceeEEEEecCCceeEEe
Q psy4565 22 KPSLVITFSGDGVTHIC 38 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~ 38 (67)
....+|||+|...|.=+
T Consensus 118 ~~~~lViD~GTA~TiD~ 134 (249)
T PRK13329 118 ARPCLVVMVGTAVTVDA 134 (249)
T ss_pred CCCEEEEECCCceeEEE
Confidence 45789999999987643
No 73
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=24.88 E-value=20 Score=22.72 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=14.1
Q ss_pred ceeEEEEecCCceeEEe
Q psy4565 22 KPSLVITFSGDGVTHIC 38 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~ 38 (67)
....+|||+|...|--+
T Consensus 119 ~~~~lViD~GTA~Tid~ 135 (206)
T PF03309_consen 119 GQPCLVIDAGTATTIDV 135 (206)
T ss_dssp TSSEEEEEESSEEEEEE
T ss_pred CCCEEEEEcCCeEEEEE
Confidence 57899999999987654
No 74
>COG0432 Uncharacterized conserved protein [Function unknown]
Probab=24.11 E-value=80 Score=19.52 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=17.6
Q ss_pred ceeEEeeeccceecccceEEEecc
Q psy4565 33 GVTHICPVYEQFALPHLTRRLDIA 56 (67)
Q Consensus 33 ~~t~i~Pv~~G~~l~~~~~~~~~g 56 (67)
+.+.++||.+|......++.+-++
T Consensus 97 G~S~~iPv~~GrL~LGTWQ~I~~~ 120 (137)
T COG0432 97 GPSLTIPVINGRLVLGTWQGIFLV 120 (137)
T ss_pred CceEEEEEeCCeEceecccEEEEE
Confidence 345678999999988877765443
No 75
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=23.70 E-value=68 Score=23.27 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=27.1
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGES 59 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~ 59 (67)
+.-+=+|+|.+.|...=+-.|.....+ -+|+|||-
T Consensus 145 t~v~NlDIGGGTtN~slFD~Gkv~dTa--CLdiGGRL 179 (473)
T COG4819 145 TRVLNLDIGGGTTNYSLFDAGKVSDTA--CLDIGGRL 179 (473)
T ss_pred eEEEEEeccCCccceeeecccccccce--eeecCcEE
Confidence 345568999999999888888877665 57888873
No 76
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=22.50 E-value=36 Score=22.40 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=13.0
Q ss_pred eeEEEEecCCceeEEe
Q psy4565 23 PSLVITFSGDGVTHIC 38 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~ 38 (67)
...+|||+|...|--+
T Consensus 116 ~~~lViD~GTA~Tid~ 131 (243)
T TIGR00671 116 FNVVVVDAGTALTIDL 131 (243)
T ss_pred CCEEEEEcCCceEEEE
Confidence 4799999999987654
No 77
>KOG1386|consensus
Probab=21.85 E-value=80 Score=23.54 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=14.5
Q ss_pred CceeEEEEecCCceeEE
Q psy4565 21 YKPSLVITFSGDGVTHI 37 (67)
Q Consensus 21 g~~tglvvd~G~~~t~i 37 (67)
+..-|+|+|+|.+.|++
T Consensus 7 ~~kYgiviDaGSSgTrl 23 (501)
T KOG1386|consen 7 NLKYGIVIDAGSSGTRL 23 (501)
T ss_pred cceEEEEEecCCCCceE
Confidence 45679999999999887
No 78
>PRK13318 pantothenate kinase; Reviewed
Probab=20.95 E-value=40 Score=22.07 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=13.6
Q ss_pred ceeEEEEecCCceeEEe
Q psy4565 22 KPSLVITFSGDGVTHIC 38 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~ 38 (67)
....+|||+|...|--+
T Consensus 123 ~~~~ivid~GTA~t~d~ 139 (258)
T PRK13318 123 GGPLIVVDFGTATTFDV 139 (258)
T ss_pred CCCEEEEEcCCceEEEE
Confidence 45799999999987654
No 79
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=20.15 E-value=1.7e+02 Score=18.93 Aligned_cols=41 Identities=2% Similarity=-0.110 Sum_probs=26.7
Q ss_pred eEEEEecCCceeEEeeeccceecccce-EEEeccchHHHHHHH
Q psy4565 24 SLVITFSGDGVTHICPVYEQFALPHLT-RRLDIAGESHITRYL 65 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~~G~~l~~~~-~~~~~gG~~~lt~~L 65 (67)
...|+|+|...+.++-+-+|.+..-.. .+...|+.. .++.+
T Consensus 92 ~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~-f~e~~ 133 (248)
T TIGR00241 92 ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGR-FLEVT 133 (248)
T ss_pred CCEEEEecCCeeEEEEECCCcEeeeeecCcccccccH-HHHHH
Confidence 346999999999999888887653222 234555544 44443
Done!