Query psy4565
Match_columns 67
No_of_seqs 144 out of 1020
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 20:17:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo0_A Actin-related protein 8 99.8 3E-22 1E-26 140.4 2.1 66 1-67 218-289 (593)
2 3qb0_A Actin-related protein 4 99.8 2.5E-20 8.4E-25 131.1 2.1 65 2-67 135-205 (498)
3 3dwl_A Actin-related protein 3 99.8 3.4E-20 1.2E-24 128.0 2.6 65 2-67 144-222 (427)
4 4am6_A Actin-like protein ARP8 99.8 1.6E-19 5.4E-24 130.2 2.3 66 1-67 241-313 (655)
5 1k8k_B ARP2, actin-like protei 99.7 3.8E-18 1.3E-22 115.8 3.4 65 1-66 124-194 (394)
6 2fxu_A Alpha-actin-1, actin, a 99.6 5.1E-17 1.7E-21 109.3 2.8 64 2-66 121-190 (375)
7 1k8k_A ARP3, actin-like protei 99.5 3.4E-15 1.2E-19 101.2 2.9 63 2-66 128-205 (418)
8 1jce_A ROD shape-determining p 98.0 2.1E-06 7.2E-11 56.4 2.7 53 11-66 130-187 (344)
9 3h1q_A Ethanolamine utilizatio 98.0 1.4E-06 4.7E-11 55.5 0.5 52 12-66 128-179 (272)
10 1dkg_D Molecular chaperone DNA 96.3 0.0017 5.9E-08 42.9 1.9 55 11-66 170-237 (383)
11 2ych_A Competence protein PILM 96.2 0.0064 2.2E-07 40.1 4.4 40 24-66 192-231 (377)
12 4apw_A ALP12; actin-like prote 96.1 0.012 4E-07 38.9 5.4 43 23-66 172-214 (329)
13 3js6_A Uncharacterized PARM pr 96.0 0.0059 2E-07 40.9 3.4 54 11-65 161-225 (355)
14 2fsj_A Hypothetical protein TA 95.8 0.012 4.1E-07 39.0 4.3 41 24-65 191-233 (346)
15 3qfu_A 78 kDa glucose-regulate 95.6 0.0041 1.4E-07 41.0 1.4 54 12-66 189-251 (394)
16 2v7y_A Chaperone protein DNAK; 95.4 0.0065 2.2E-07 42.2 2.0 54 12-66 145-206 (509)
17 2zgy_A Plasmid segregation pro 95.1 0.023 7.9E-07 36.9 3.7 43 23-66 164-207 (320)
18 4a2a_A Cell division protein F 95.0 0.028 9.6E-07 38.4 4.2 40 24-66 207-246 (419)
19 3cet_A Conserved archaeal prot 94.1 0.038 1.3E-06 37.4 3.1 26 23-48 127-152 (334)
20 3i33_A Heat shock-related 70 k 93.5 0.022 7.6E-07 37.8 1.1 42 24-66 215-259 (404)
21 1yuw_A Heat shock cognate 71 k 88.8 0.41 1.4E-05 33.6 3.6 43 23-66 193-238 (554)
22 3d2f_A Heat shock protein homo 86.3 0.68 2.3E-05 33.5 3.6 43 23-66 197-242 (675)
23 2d0o_A DIOL dehydratase-reacti 85.5 0.83 2.9E-05 33.2 3.7 40 23-65 407-446 (610)
24 1nbw_A Glycerol dehydratase re 85.5 0.84 2.9E-05 33.2 3.7 40 23-65 409-448 (607)
25 3cer_A Possible exopolyphospha 85.1 1.3 4.5E-05 29.5 4.3 42 23-65 146-191 (343)
26 1t6c_A Exopolyphosphatase; alp 84.9 1.7 5.7E-05 28.6 4.7 41 22-65 137-177 (315)
27 2kho_A Heat shock protein 70; 83.8 0.96 3.3E-05 32.1 3.4 43 23-66 188-237 (605)
28 4gni_A Putative heat shock pro 79.1 1.6 5.3E-05 28.9 2.9 43 23-66 205-250 (409)
29 3aap_A Ectonucleoside triphosp 76.9 3.5 0.00012 27.6 4.1 37 23-59 140-178 (353)
30 3mdq_A Exopolyphosphatase; str 74.2 5.2 0.00018 26.1 4.4 39 23-64 131-169 (315)
31 1u6z_A Exopolyphosphatase; alp 68.9 7.9 0.00027 27.0 4.5 38 24-64 138-175 (513)
32 3hi0_A Putative exopolyphospha 65.1 10 0.00036 26.4 4.6 38 23-63 140-177 (508)
33 4b9q_A Chaperone protein DNAK; 64.2 7 0.00024 27.7 3.6 42 23-65 188-236 (605)
34 4f02_C Eukaryotic translation 36.3 13 0.00044 15.9 0.8 15 51-66 6-20 (27)
35 3qb0_A Actin-related protein 4 34.4 23 0.00079 24.8 2.3 27 12-38 12-38 (498)
36 3cj1_A Ectonucleoside triphosp 31.3 63 0.0021 22.3 4.0 36 23-58 190-226 (456)
37 3zx3_A Ectonucleoside triphosp 25.6 84 0.0029 21.8 3.8 36 23-58 181-218 (452)
38 3bex_A Type III pantothenate k 24.1 19 0.00064 22.7 0.3 21 22-43 121-141 (249)
No 1
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=99.84 E-value=3e-22 Score=140.43 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=62.4
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
++++||+|++ .+++||+|+.|++||+|||+|++.|+|+||+||++++++++|+++||++ +|+||++
T Consensus 218 ~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~-lt~~L~~ 289 (593)
T 4fo0_A 218 VNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSD-VSRCFYW 289 (593)
T ss_dssp HHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCHHH-HHHHHHH
T ss_pred HHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccHHH-HHHHHHH
Confidence 4789999996 5899999999999999999999999999999999999999999999999 9999863
No 2
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.5e-20 Score=131.13 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=61.6
Q ss_pred cccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 2 KLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 2 ~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
+++||+|++ .++++|+|+.|+++|+|||+|++.|+++||++|++++++++|+++||++ +|+||++
T Consensus 135 eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~~G~~l~~ai~rl~vgG~~-lt~~L~~ 205 (498)
T 3qb0_A 135 EVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKF-INHLIKK 205 (498)
T ss_dssp HHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCSHHH-HHHHHHH
T ss_pred HHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEeCCEEccccceeccccHHH-HHHHHHH
Confidence 689999996 5789999999999999999999999999999999999999999999999 9999863
No 3
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.78 E-value=3.4e-20 Score=127.95 Aligned_cols=65 Identities=29% Similarity=0.459 Sum_probs=61.0
Q ss_pred cccccccCc------cceeecceecC--------ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 2 KLDLEKVCP------VQTYVAYGTDY--------KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 2 ~~~fe~~~~------~~~~la~~~~g--------~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
+++||+|++ +++++|+|++| +++|+|||+|++.|+++||++|++++++++|+++||++ +|+||++
T Consensus 144 ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~-lt~~L~~ 222 (427)
T 3dwl_A 144 EIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRD-VTYFVQS 222 (427)
T ss_dssp HHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHHHH
T ss_pred HHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHH-HHHHHHH
Confidence 789999996 58999999998 68999999999999999999999999999999999999 9999863
No 4
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=99.75 E-value=1.6e-19 Score=130.25 Aligned_cols=66 Identities=23% Similarity=0.202 Sum_probs=61.7
Q ss_pred CcccccccCc------cceeecceecC-ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDY-KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g-~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~ 67 (67)
++++||+|++ .++++|+|+.| +++|+|||+|++.|+++||++|++++++++|+++||++ +|+||++
T Consensus 241 ~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~d-LT~yL~k 313 (655)
T 4am6_A 241 IRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDD-ITRLFAL 313 (655)
T ss_dssp HHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHHHH
T ss_pred HHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEEcCCCceEEEEEEeCCEEEhhheeeecchHHH-HHHHHHH
Confidence 3789999996 57899999999 79999999999999999999999999999999999999 9999863
No 5
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=99.71 E-value=3.8e-18 Score=115.76 Aligned_cols=65 Identities=52% Similarity=0.794 Sum_probs=40.0
Q ss_pred CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
++++||.|++ .++++|+|+.|+++|+|||+|++.|+++||++|++++++++++++||++ +|++|.
T Consensus 124 ~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~-lt~~l~ 194 (394)
T 1k8k_B 124 VEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194 (394)
T ss_dssp ------------------------------CCEEEECSSCEEEECEETTEECSTTCEEESCCHHH-HHHHHH
T ss_pred HHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCceEeeeeECCEEcccceEEeeccHHH-HHHHHH
Confidence 4689999995 5799999999999999999999999999999999999999999999999 999986
No 6
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=99.64 E-value=5.1e-17 Score=109.28 Aligned_cols=64 Identities=38% Similarity=0.639 Sum_probs=60.3
Q ss_pred cccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 2 KLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 2 ~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
+++||.|++ .++++|+|+.|+.+++|||+|++.|+++||++|++++++..++++||++ +|++|.
T Consensus 121 e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~-lt~~l~ 190 (375)
T 2fxu_A 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 190 (375)
T ss_dssp HHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHHH
T ss_pred HHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceEEeEeECCEEeccceEEeccCHHH-HHHHHH
Confidence 578999996 5889999999999999999999999999999999999999999999999 999985
No 7
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=99.52 E-value=3.4e-15 Score=101.19 Aligned_cols=63 Identities=30% Similarity=0.449 Sum_probs=57.2
Q ss_pred cccccccCc------cceeeccee---------cCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 2 KLDLEKVCP------VQTYVAYGT---------DYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 2 ~~~fe~~~~------~~~~la~~~---------~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
+++||.|++ .++++|+|+ .++ +|+|||+|++.|+++||++|+++.+++.++++||++ +|++|.
T Consensus 128 e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~-lt~~l~ 205 (418)
T 1k8k_A 128 EIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRD-ITYFIQ 205 (418)
T ss_dssp HHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHH-HHHHHH
T ss_pred HHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHH-HHHHHH
Confidence 578999985 578888888 566 999999999999999999999999999999999999 999885
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=98.04 E-value=2.1e-06 Score=56.42 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=44.0
Q ss_pred cceeecceecCc-----eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 11 VQTYVAYGTDYK-----PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 11 ~~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
.++..|+++.+. .+.+|+|+|.+.|+++++..|.++. ....++||++ +++.|.
T Consensus 130 ~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~~--~~~~~lGG~~-id~~l~ 187 (344)
T 1jce_A 130 EEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVT--WESIRIAGDE-MDEAIV 187 (344)
T ss_dssp EHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHH-HHHHHH
T ss_pred CCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEEe--eCCCCccChh-HHHHHH
Confidence 466777777664 6799999999999999999988764 4688999999 998875
No 9
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=97.95 E-value=1.4e-06 Score=55.47 Aligned_cols=52 Identities=15% Similarity=0.026 Sum_probs=43.9
Q ss_pred ceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 12 QTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 12 ~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
++..++++.+..+++|+|+|.+.|.++++.+|.+.. ....++||.+ +++.+.
T Consensus 128 e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~--~~~~~~Gg~~-~~~~l~ 179 (272)
T 3h1q_A 128 EPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITA--TFDEPTGGTH-LSLVLA 179 (272)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEE--ECCBSCCHHH-HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEE--EecCCCcHHH-HHHHHH
Confidence 556677777888899999999999999999998774 4688999999 888764
No 10
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=96.26 E-value=0.0017 Score=42.93 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=36.1
Q ss_pred cceeecceecCc------eeEEEEecCCceeEEeeeccc------eeccc-ceEEEeccchHHHHHHHh
Q psy4565 11 VQTYVAYGTDYK------PSLVITFSGDGVTHICPVYEQ------FALPH-LTRRLDIAGESHITRYLL 66 (67)
Q Consensus 11 ~~~~la~~~~g~------~tglvvd~G~~~t~i~Pv~~G------~~l~~-~~~~~~~gG~~~lt~~L~ 66 (67)
.++..|+++.+. .+.+|+|+|.++|.++.+-.+ ..... .....++||.+ +++.|.
T Consensus 170 ~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~-id~~l~ 237 (383)
T 1dkg_D 170 NEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGED-FDSRLI 237 (383)
T ss_dssp BHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHH-HHHHHH
T ss_pred ccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHH-HHHHHH
Confidence 345555544332 468999999999999966543 21111 23446899999 888774
No 11
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=96.21 E-value=0.0064 Score=40.08 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=34.3
Q ss_pred eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
..+|+|+|.+.|.++.+.+|.+.. .+.+++||.+ +++.+.
T Consensus 192 ~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG~~-i~~~i~ 231 (377)
T 2ych_A 192 VFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSGKD-FTEAIA 231 (377)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHH-HHHHHH
T ss_pred eEEEEEECCCcEEEEEEECCEEEE--EEeeechHHH-HHHHHH
Confidence 359999999999999999998764 4678999999 998764
No 12
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=96.13 E-value=0.012 Score=38.88 Aligned_cols=43 Identities=5% Similarity=-0.168 Sum_probs=37.4
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
..-+|||+|.++|.++-+-+|.+.......+++||.+ +++-+.
T Consensus 172 ~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~-~~~~i~ 214 (329)
T 4apw_A 172 KNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKD-LIIRVG 214 (329)
T ss_dssp CEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHHH
T ss_pred CCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHH-HHHHHH
Confidence 5568999999999999999999887777889999998 887664
No 13
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=95.95 E-value=0.0059 Score=40.90 Aligned_cols=54 Identities=9% Similarity=-0.062 Sum_probs=42.0
Q ss_pred cceeecceecC-----------ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565 11 VQTYVAYGTDY-----------KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 11 ~~~~la~~~~g-----------~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L 65 (67)
+|+.-|+++.+ ...-+|||+|.++|.++-+.+|.+.+..+..+++||.+ +.+-+
T Consensus 161 pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~-~~~~i 225 (355)
T 3js6_A 161 AQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTID-FYKRI 225 (355)
T ss_dssp EHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHH
T ss_pred eCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHH-HHHHH
Confidence 46666666543 34568999999999999998888888888899999987 66544
No 14
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=95.79 E-value=0.012 Score=39.03 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=33.2
Q ss_pred eEEEEecCCceeEEeeec--cceecccceEEEeccchHHHHHHH
Q psy4565 24 SLVITFSGDGVTHICPVY--EQFALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~--~G~~l~~~~~~~~~gG~~~lt~~L 65 (67)
+-+|+|+|.++|.+.-+- +|.+.......+++||.+ +++.+
T Consensus 191 ~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~-i~~~I 233 (346)
T 2fsj_A 191 YGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGD-AISAL 233 (346)
T ss_dssp EEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHH-HHHHH
T ss_pred cEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHH-HHHHH
Confidence 349999999999999886 677666657888999987 77655
No 15
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=95.56 E-value=0.0041 Score=41.00 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=34.0
Q ss_pred ceeecceecCc------eeEEEEecCCceeEEeee--ccceecccc-eEEEeccchHHHHHHHh
Q psy4565 12 QTYVAYGTDYK------PSLVITFSGDGVTHICPV--YEQFALPHL-TRRLDIAGESHITRYLL 66 (67)
Q Consensus 12 ~~~la~~~~g~------~tglvvd~G~~~t~i~Pv--~~G~~l~~~-~~~~~~gG~~~lt~~L~ 66 (67)
++..|+++.+. ..-+|+|+|.++|.+..+ .++..-..+ ....++||.+ +++.|.
T Consensus 189 Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~~-~d~~l~ 251 (394)
T 3qfu_A 189 EPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGED-FDYKIV 251 (394)
T ss_dssp HHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHH-HHHHHH
T ss_pred CHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEEEcCCCCCChHH-HHHHHH
Confidence 45555554432 345999999999977654 344322222 3347899999 887764
No 16
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=95.41 E-value=0.0065 Score=42.17 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=36.8
Q ss_pred ceeecceecCc-----eeEEEEecCCceeEEeeec--ccee-cccceEEEeccchHHHHHHHh
Q psy4565 12 QTYVAYGTDYK-----PSLVITFSGDGVTHICPVY--EQFA-LPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 12 ~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv~--~G~~-l~~~~~~~~~gG~~~lt~~L~ 66 (67)
++..|+++.|. .+.+|+|+|.+++.+..+- +|.. +.......++||.+ +++.|.
T Consensus 145 Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d-~d~~l~ 206 (509)
T 2v7y_A 145 EPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDD-FDQVII 206 (509)
T ss_dssp HHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHH-HHHHHH
T ss_pred CHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHH-HHHHHH
Confidence 45555555443 5799999999999999654 2532 22233456899999 888764
No 17
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=95.05 E-value=0.023 Score=36.94 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=34.0
Q ss_pred eeEEEEecCCceeEEeeecccee-cccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFA-LPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~-l~~~~~~~~~gG~~~lt~~L~ 66 (67)
...+|+|+|.++|.+.-+-+|.+ +.......++||.+ +++-+.
T Consensus 164 ~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~-~~~~I~ 207 (320)
T 2zgy_A 164 DSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSL-VTSAVK 207 (320)
T ss_dssp CEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHH-HHHHHH
T ss_pred CCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHH-HHHHHH
Confidence 46799999999999998888776 33345677999998 877653
No 18
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=95.01 E-value=0.028 Score=38.41 Aligned_cols=40 Identities=8% Similarity=0.101 Sum_probs=34.1
Q ss_pred eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565 24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~ 66 (67)
..+++|+|.+.|.++-+.+|.+.. ...+++||.+ +|+-+.
T Consensus 207 gv~vvDiGggttdisi~~~g~~~~--~~~i~~GG~~-it~dIa 246 (419)
T 4a2a_A 207 GVVVVNLGYNFTGLIAYKNGVPIK--ISYVPVGMKH-VIKDVS 246 (419)
T ss_dssp CEEEEEECSSSEEEEEEETTEEEE--EEEESCCHHH-HHHHHH
T ss_pred CEEEEEECCCcEEEEEEECCEEEE--EEecccHHHH-HHHHHH
Confidence 578999999999999999998765 4578999999 988653
No 19
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=94.15 E-value=0.038 Score=37.44 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.8
Q ss_pred eeEEEEecCCceeEEeeeccceeccc
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPH 48 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~ 48 (67)
.++++||+|..+|.++|+.+|.|+..
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~g 152 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVAE 152 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECCC
T ss_pred CCEEEEEcCcchhhhhhhcCCeeccc
Confidence 57999999999999999999999763
No 20
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=93.49 E-value=0.022 Score=37.78 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=28.5
Q ss_pred eEEEEecCCceeEEeeec--ccee-cccceEEEeccchHHHHHHHh
Q psy4565 24 SLVITFSGDGVTHICPVY--EQFA-LPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~--~G~~-l~~~~~~~~~gG~~~lt~~L~ 66 (67)
.-+|+|+|.+++.+.-+- ++.. +.......++||.+ +++.|.
T Consensus 215 ~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~-~d~~l~ 259 (404)
T 3i33_A 215 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED-FDNRMV 259 (404)
T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHH-HHHHHH
T ss_pred eEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHH-HHHHHH
Confidence 359999999999997552 3322 22223447899998 887763
No 21
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=88.83 E-value=0.41 Score=33.61 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=30.7
Q ss_pred eeEEEEecCCceeEEeeec--ccee-cccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPVY--EQFA-LPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~--~G~~-l~~~~~~~~~gG~~~lt~~L~ 66 (67)
...+|+|+|.+++.+.-+- +|.. +.......++||.+ +++.|.
T Consensus 193 ~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d-~d~~l~ 238 (554)
T 1yuw_A 193 RNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGED-FDNRMV 238 (554)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHH-HHHHHH
T ss_pred cEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHH-HHHHHH
Confidence 5689999999999998654 4543 22233456899998 887653
No 22
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=86.32 E-value=0.68 Score=33.46 Aligned_cols=43 Identities=5% Similarity=-0.070 Sum_probs=29.9
Q ss_pred eeEEEEecCCceeEEeeec--ccee-cccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPVY--EQFA-LPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~--~G~~-l~~~~~~~~~gG~~~lt~~L~ 66 (67)
...+|+|+|.+++.+.-+- +|.. +.....-.++||.+ +++.|.
T Consensus 197 ~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d-~D~~l~ 242 (675)
T 3d2f_A 197 RIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRD-FDLAIT 242 (675)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHH-HHHHHH
T ss_pred cEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHH-HHHHHH
Confidence 5689999999999997653 4543 22223346799998 877653
No 23
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=85.51 E-value=0.83 Score=33.21 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=32.7
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L 65 (67)
.-..++|+|.++|.+.=+.+|..... ..++.||.+ +|.-+
T Consensus 407 LGvaiIDmGGGTTd~sVf~~G~lv~a--~~ip~gG~~-VT~DI 446 (610)
T 2d0o_A 407 RPLAILDLGAGSTDASIINPKGDIIA--THLAGAGDM-VTMII 446 (610)
T ss_dssp SSEEEEEECSSEEEEEEECTTCCEEE--EEEECSHHH-HHHHH
T ss_pred CCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHH-HHHHH
Confidence 34678999999999998888876654 488999998 99865
No 24
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=85.45 E-value=0.84 Score=33.20 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=32.7
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L 65 (67)
.-..++|+|.++|.+.=+.+|..... ..++.||.+ +|.-+
T Consensus 409 lGvaiIDmGgGTTd~sVf~~g~lv~a--~~ip~gG~~-VT~DI 448 (607)
T 1nbw_A 409 APLAILDLGAGSTDAAIVNAEGQITA--VHLAGAGNM-VSLLI 448 (607)
T ss_dssp SSEEEEEECSSEEEEEEECSSSCEEE--EEEECCHHH-HHHHH
T ss_pred CCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHH-HHHHH
Confidence 34678999999999998888876654 488999998 99865
No 25
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=85.08 E-value=1.3 Score=29.45 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=31.6
Q ss_pred eeEEEEecCCceeEEeeecc--ceec--ccceEEEeccchHHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYE--QFAL--PHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~--G~~l--~~~~~~~~~gG~~~lt~~L 65 (67)
..++++|+|.++|.++-.-+ +.+. ......+++|+.. +++-+
T Consensus 146 ~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~SlplG~v~-lt~~~ 191 (343)
T 3cer_A 146 APYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSMNIGSVR-MTERH 191 (343)
T ss_dssp SSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEESCCHHH-HHHHT
T ss_pred CCEEEEEeCCCceEEEEeecCccCcccccceeEEEehhHHH-HHHHh
Confidence 46999999999999986655 3321 1357789999988 77754
No 26
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=84.92 E-value=1.7 Score=28.61 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=32.4
Q ss_pred ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565 22 KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L 65 (67)
..+++|+|+|.++|.++-.-++.+. ....+++|+.. +++.+
T Consensus 137 ~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G~v~-l~e~~ 177 (315)
T 1t6c_A 137 EGEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIVN-LTETF 177 (315)
T ss_dssp CSEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHHH-HHHHH
T ss_pred CCCEEEEEeCCCcEEEEEEeCCcee--eEEEEeccHHH-HHHHh
Confidence 4579999999999999877666553 46689999987 77654
No 27
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=83.83 E-value=0.96 Score=32.08 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=29.0
Q ss_pred eeEEEEecCCceeEEeeecc------cee-cccceEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPVYE------QFA-LPHLTRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~------G~~-l~~~~~~~~~gG~~~lt~~L~ 66 (67)
..-+|+|+|.+++.+.-+-- |.. +.......++||.+ +++.|.
T Consensus 188 ~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d-~D~~l~ 237 (605)
T 2kho_A 188 RTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGED-FDSRLI 237 (605)
T ss_dssp EEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGG-THHHHH
T ss_pred CEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHH-HHHHHH
Confidence 45899999999999986642 322 11122345799998 887663
No 28
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=79.08 E-value=1.6 Score=28.93 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=27.8
Q ss_pred eeEEEEecCCceeEEeee--ccceecccc-eEEEeccchHHHHHHHh
Q psy4565 23 PSLVITFSGDGVTHICPV--YEQFALPHL-TRRLDIAGESHITRYLL 66 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv--~~G~~l~~~-~~~~~~gG~~~lt~~L~ 66 (67)
..-+|+|+|.+++.+.-+ -++..--.+ ..-.++||.+ +++-|.
T Consensus 205 ~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~-~d~~i~ 250 (409)
T 4gni_A 205 KIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIA-LDKVLI 250 (409)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHH-HHHHHH
T ss_pred CEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHH-HHHHHH
Confidence 358999999999998754 222111111 2236899998 877653
No 29
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=76.92 E-value=3.5 Score=27.59 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=26.1
Q ss_pred eeEEEEecCCceeEEeeecc--ceecccceEEEeccchH
Q psy4565 23 PSLVITFSGDGVTHICPVYE--QFALPHLTRRLDIAGES 59 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~--G~~l~~~~~~~~~gG~~ 59 (67)
.+.+++|+|.++|.++-... +.+.......+++|+..
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~~~ 178 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQN 178 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETTEE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECCcc
Confidence 46999999999999985533 23333335778888753
No 30
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=74.19 E-value=5.2 Score=26.14 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=30.8
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY 64 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~ 64 (67)
..++|+|+|.++|.++-+-++.+. ....+++|.-. +++.
T Consensus 131 ~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vr-l~e~ 169 (315)
T 3mdq_A 131 HISLAMDIGGGSVEFIIGNKNEIL--WKQSFEIGGQR-LIDR 169 (315)
T ss_dssp CCEEEEEECSSCEEEEEECSSCEE--EEEEESCCHHH-HHHH
T ss_pred CCEEEEEeCCCceEEEEEECCeEe--eeEEEechhhH-HHHH
Confidence 568999999999999888766543 46688999877 6664
No 31
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=68.89 E-value=7.9 Score=27.01 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=29.7
Q ss_pred eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565 24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY 64 (67)
Q Consensus 24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~ 64 (67)
.++|+|+|.++|.++-.-++.+. ....+++|.-. +++.
T Consensus 138 ~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vr-lte~ 175 (513)
T 1u6z_A 138 RKLVIDIGGGSTELVIGENFEPI--LVESRRMGCVS-FAQL 175 (513)
T ss_dssp CEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHH-HHHH
T ss_pred CEEEEEECCCcEEEEEEeCCeee--EEEEEeccHHH-HHHH
Confidence 69999999999999876555543 45679999877 6654
No 32
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=65.07 E-value=10 Score=26.38 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=30.0
Q ss_pred eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITR 63 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~ 63 (67)
..++|+|+|.++|.++-+-++.+. ....+++|.-. +++
T Consensus 140 ~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~lG~vr-l~e 177 (508)
T 3hi0_A 140 PDGIAGDLGGGSLELIDIKDKSCG--EGITLPLGGLR-LSE 177 (508)
T ss_dssp CEEEEEEECSSCEEEEEEETTEEC--CCEEESCCHHH-HHH
T ss_pred CCeEEEEeCCCceEEEEeeCCeee--eEEEecceEEe-hhh
Confidence 468999999999999988776553 45688888766 665
No 33
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=64.17 E-value=7 Score=27.67 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=26.5
Q ss_pred eeEEEEecCCceeEEeeecccee-------cccceEEEeccchHHHHHHH
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFA-------LPHLTRRLDIAGESHITRYL 65 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~-------l~~~~~~~~~gG~~~lt~~L 65 (67)
..-+|+|+|.+++.+.-+--+.. ......-..+||.+ +++.|
T Consensus 188 ~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d-~D~~l 236 (605)
T 4b9q_A 188 RTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGED-FDSRL 236 (605)
T ss_dssp EEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHH-HHHHH
T ss_pred CEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHH-HHHHH
Confidence 45789999999999875532221 11112234679988 87755
No 34
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=36.26 E-value=13 Score=15.87 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=11.2
Q ss_pred EEEeccchHHHHHHHh
Q psy4565 51 RRLDIAGESHITRYLL 66 (67)
Q Consensus 51 ~~~~~gG~~~lt~~L~ 66 (67)
+-.|-||++ +|+-++
T Consensus 6 rdpnqggkd-iteeim 20 (27)
T 4f02_C 6 RDPNQGGKD-ITEEIM 20 (27)
T ss_pred cCccccchh-hHHHHH
Confidence 345679999 998765
No 35
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=34.42 E-value=23 Score=24.80 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=17.4
Q ss_pred ceeecceecCceeEEEEecCCceeEEe
Q psy4565 12 QTYVAYGTDYKPSLVITFSGDGVTHIC 38 (67)
Q Consensus 12 ~~~la~~~~g~~tglvvd~G~~~t~i~ 38 (67)
++.+..|+......+|+|.|.+.+.+-
T Consensus 12 ~~~~~~yggde~~~iVID~GS~~~kaG 38 (498)
T 3qb0_A 12 NAALQVYGGDEVSAVVIDPGSYTTNIG 38 (498)
T ss_dssp -------CCCCBSCEEEECCSSEEEEE
T ss_pred cchhcccCCCCCCeEEEECCCcEEEEE
Confidence 456677887778899999999998774
No 36
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=31.25 E-value=63 Score=22.32 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=24.8
Q ss_pred eeEEEEecCCceeEEeeecccee-cccceEEEeccch
Q psy4565 23 PSLVITFSGDGVTHICPVYEQFA-LPHLTRRLDIAGE 58 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~~-l~~~~~~~~~gG~ 58 (67)
.+..++|+|.++|.++-.-+... .+.....+.++|+
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~~~~~~~~~~l~l~g~ 226 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSPSEDPGNEVHLRLYGQ 226 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSCCSCGGGEEEEEETTE
T ss_pred CceEEEEcCCCceEEEeccCCccCCCCceEEEEeCCe
Confidence 46788999999999996644432 2344566666664
No 37
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=25.56 E-value=84 Score=21.82 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=24.3
Q ss_pred eeEEEEecCCceeEEeeeccce--ecccceEEEeccch
Q psy4565 23 PSLVITFSGDGVTHICPVYEQF--ALPHLTRRLDIAGE 58 (67)
Q Consensus 23 ~tglvvd~G~~~t~i~Pv~~G~--~l~~~~~~~~~gG~ 58 (67)
.+..++|+|.+.|.++-.-+.. .-+....++.++|+
T Consensus 181 ~t~g~lDlGGgStQi~f~~~~~~~~~~~~~~~l~l~g~ 218 (452)
T 3zx3_A 181 STFGALDLGGASTQITFVPLNSTLEAPETSLQFRLYGT 218 (452)
T ss_dssp CCCEEEEECSSEEEEEECCSSCCSSSGGGEEEEEETTE
T ss_pred CceEEEecCCCceEEEeccCCCccCCCCceEEEEECCE
Confidence 4666889999999998554443 22334566777764
No 38
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=24.08 E-value=19 Score=22.74 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=15.3
Q ss_pred ceeEEEEecCCceeEEeeeccc
Q psy4565 22 KPSLVITFSGDGVTHICPVYEQ 43 (67)
Q Consensus 22 ~~tglvvd~G~~~t~i~Pv~~G 43 (67)
....+|||.|...|-=+= -+|
T Consensus 121 ~~~~iVvD~GTA~T~d~v-~~g 141 (249)
T 3bex_A 121 GKNGIIIDMGTATTVDLV-VNG 141 (249)
T ss_dssp CSCEEEEEESSEEEEEEE-ETT
T ss_pred CCCEEEEEcCCceEEEEE-eCC
Confidence 457999999999876543 344
Done!