RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4565
(67 letters)
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 62.0 bits (151), Expect = 1e-13
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 30 SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
SGDGVTH+ PV E + + + + IAG IT ++
Sbjct: 170 SGDGVTHVIPVAEGYVIGSCIKHIPIAG-RDITYFI 204
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 61.6 bits (150), Expect = 2e-13
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 17 YGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
Y + +V+ SGDGVTH P+YE +ALPH RLD+AG +T YL
Sbjct: 143 YASGRTTGIVL-DSGDGVTHNVPIYEGYALPHAIMRLDLAG-RDLTDYL 189
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 60.1 bits (146), Expect = 6e-13
Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)
Query: 26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
V+ SGDGVTHICPVYE F+LPHLTRRLDIAG ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAG-RDITRYLI 194
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 60.2 bits (146), Expect = 6e-13
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 30 SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
SGDGVTHI PV E + + + + +AG +T ++
Sbjct: 186 SGDGVTHIIPVAEGYVIGSSIKTMPLAG-RDVTYFVQ 221
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 58.1 bits (140), Expect = 4e-12
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 30 SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
G + P+ + L TRR IAG I +
Sbjct: 169 IGHDTCSVSPIVDGMTLSKSTRRNFIAG-KFINHLI 203
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 0.33
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 2 KLDLEKVCPVQTYVA-YGTDYKPSLVI 27
K L+K+ Q + Y D P+L I
Sbjct: 19 KQALKKL---QASLKLYADDSAPALAI 42
>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas
comosus}
Length = 135
Score = 26.2 bits (57), Expect = 0.72
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 2 KLDLEKVCPVQTYVAYGTDYKPSLVITFSGDGVTHIC--PVYEQ 43
L+ +V + V G + L + + G + V+EQ
Sbjct: 77 LLEFVRVVKAKEQVVSGMMHY--LTVEVNDAGKKKLYEAKVWEQ 118
>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold,
cystatin/monellin superfamily, phytocystatin family;
NMR {Oryza sativa japonica group} SCOP: d.17.1.2
Length = 102
Score = 25.7 bits (56), Expect = 0.90
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 2 KLDLEKVCPVQTYVAYGTDYKPSLVITFSGDGVTHICP--VYEQ 43
L+ EK+ V+ V GT Y I + V+E+
Sbjct: 41 LLEFEKLVSVKQQVVAGTLYY--FTIEVKEGDAKKLYEAKVWEK 82
>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi,
papain, phytocystatin, allergen, disulfide bond,
hydrolase, protease; 2.03A {Colocasia esculenta}
Length = 91
Score = 25.3 bits (55), Expect = 1.1
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 2 KLDLEKVCPVQTYVAYGTDYKPSLVITFSGDGVTHICP--VYEQ 43
L ++ + V G + L + G + V+ Q
Sbjct: 36 LLQFSRLVKAKQQVVSGIMHH--LTVEVIEGGKKKVYEAKVWVQ 77
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 25.5 bits (57), Expect = 1.3
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 11/50 (22%)
Query: 1 MKLD----LE--KVCPVQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQF 44
KLD L+ K+C V Y D + + ++ V PVYE F
Sbjct: 352 TKLDVLDGLDEVKLC-----VGYKIDGEDADLLPRGAAEVARCEPVYETF 396
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase;
2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1
PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Length = 324
Score = 23.8 bits (52), Expect = 4.6
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 11 VQTYVAYGTDYKPSLVITFSGDG 33
+ T Y +P +V+T++
Sbjct: 155 LITIEEYKKTARPKVVMTWAPHP 177
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A,
OB-fold, structural genomics, BSGC STRU funded by NIH;
1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2
b.40.4.5 PDB: 1eif_A
Length = 136
Score = 23.2 bits (50), Expect = 6.6
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 29 FSGDGVTHICPVYEQFALPHLTRR----LDIAGESH 60
F + P + +P + RR L I G+
Sbjct: 55 FEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGDMV 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.430
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,044,329
Number of extensions: 47478
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 12
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.2 bits)