RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4565
         (67 letters)



>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
          (Bos taurus) [TaxId: 9913]}
          Length = 258

 Score = 55.5 bits (133), Expect = 9e-12
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 30 SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
          SGDGVTH+ PV E + +    + + IAG   IT ++
Sbjct: 10 SGDGVTHVIPVAEGYVIGSCIKHIPIAGR-DITYFI 44


>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
          (Bos taurus) [TaxId: 9913]}
          Length = 190

 Score = 53.6 bits (128), Expect = 2e-11
 Identities = 31/36 (86%), Positives = 32/36 (88%), Gaps = 1/36 (2%)

Query: 30 SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
          SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL
Sbjct: 6  SGDGVTHICPVYEGFSLPHLTRRLDIAG-RDITRYL 40


>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 225

 Score = 52.4 bits (125), Expect = 8e-11
 Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 30 SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
          SGDGVTH  P+YE +ALPH   RLD+AG   +T YL
Sbjct: 9  SGDGVTHNVPIYEGYALPHAIMRLDLAGR-DLTDYL 43


>d1lpja_ b.60.1.2 (A:) Cellular retinol-binding protein IV {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 133

 Score = 23.2 bits (50), Expect = 2.5
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 18 GTDYKPSLVITFSGDGVT 35
              KP  VI  +GD  T
Sbjct: 33 AKLLKPQKVIEQNGDSFT 50


>d1b56a_ b.60.1.2 (A:) Epidermal fatty acid binding protein {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 133

 Score = 23.3 bits (50), Expect = 2.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 18 GTDYKPSLVITFSGDGVT 35
          G   KP  +IT  G  +T
Sbjct: 34 GAMAKPDCIITCDGKNLT 51


>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 430

 Score = 23.1 bits (49), Expect = 3.2
 Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 5/38 (13%)

Query: 7   KVCPVQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQF 44
           KV      ++Y  + K       + + +  +   YE  
Sbjct: 347 KVG-----ISYKLNGKRIPYFPANQEILQKVEVEYETL 379


>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 22.9 bits (49), Expect = 3.6
 Identities = 5/18 (27%), Positives = 7/18 (38%)

Query: 18 GTDYKPSLVITFSGDGVT 35
              KP   I   G+ +T
Sbjct: 33 ALLLKPDKEIEHQGNHMT 50


>d1vyfa_ b.60.1.2 (A:) Fatty acid-binding protein Sm14 {Blood
          fluke (Schistosoma mansoni) [TaxId: 6183]}
          Length = 135

 Score = 22.9 bits (49), Expect = 3.8
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 18 GTDYKPSLVITFSGDGVT 35
          G    P++  T  GD +T
Sbjct: 35 GNTVTPTVTFTMDGDKMT 52


>d1fdqa_ b.60.1.2 (A:) Brain fatty acid binding protein {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 131

 Score = 22.9 bits (49), Expect = 4.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 18 GTDYKPSLVITFSGDGVT 35
          G   KP+++I+  GD V 
Sbjct: 33 GNVTKPTVIISQEGDKVV 50


>d2a0aa1 b.60.1.2 (A:1-131) Der f 13 allergen {House dust mite
          (Dermatophagoides farinae) [TaxId: 6954]}
          Length = 131

 Score = 22.5 bits (48), Expect = 5.4
 Identities = 3/18 (16%), Positives = 5/18 (27%)

Query: 18 GTDYKPSLVITFSGDGVT 35
              KP+  +    D   
Sbjct: 33 AKTLKPTFEVAIENDQYI 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 254,929
Number of extensions: 9143
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 10
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)