Query psy4567
Match_columns 803
No_of_seqs 339 out of 471
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 20:19:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gmi_A Protein kinase C, epsil 62.3 14 0.00047 33.5 6.3 47 271-322 58-104 (136)
2 2dmh_A Myoferlin; beta-sandwic 52.6 18 0.00063 32.5 5.4 52 271-322 46-97 (140)
3 3f04_A Synaptotagmin-1; C2A, c 49.6 26 0.00091 31.6 6.0 64 271-338 77-141 (143)
4 1wfm_A Synaptotagmin XIII; C2 47.7 22 0.00074 32.4 5.1 65 271-338 67-131 (138)
5 1rsy_A Synaptotagmin I; calciu 45.6 30 0.001 31.8 5.8 64 271-338 85-149 (152)
6 3rdl_A Protein kinase C alpha 44.9 34 0.0012 30.4 5.9 64 271-339 61-124 (137)
7 2chd_A Rabphilin-3A, exophilin 44.6 1.2E+02 0.0042 27.0 9.7 53 271-324 74-127 (142)
8 1a25_A CALB, protein kinase C 44.6 32 0.0011 31.4 5.7 62 272-338 77-138 (149)
9 2bwq_A Regulating synaptic mem 44.3 28 0.00095 30.7 5.1 63 272-337 64-128 (129)
10 3b7y_A E3 ubiquitin-protein li 43.3 46 0.0016 30.4 6.6 48 272-323 67-114 (153)
11 1wfj_A Putative elicitor-respo 41.6 28 0.00097 31.1 4.8 47 272-322 52-98 (136)
12 3pyc_A E3 ubiquitin-protein li 40.9 98 0.0034 27.4 8.3 45 271-320 47-94 (132)
13 3kwu_A MUNC13-1; calcium bindi 40.6 1E+02 0.0035 27.8 8.5 60 271-338 57-127 (148)
14 1v27_A Regulating synaptic mem 38.7 34 0.0012 30.5 4.9 63 272-338 67-132 (141)
15 1ugk_A Synaptotagmin IV, KIAA1 37.2 64 0.0022 28.9 6.4 64 272-338 67-132 (138)
16 2d8k_A Synaptotagmin VII; exoc 37.0 34 0.0011 30.9 4.6 64 271-338 69-134 (141)
17 2cm5_A Rabphilin-3A; protein t 35.0 2E+02 0.0069 26.5 9.7 51 271-322 82-132 (166)
18 2ep6_A MCTP2 protein; beta san 34.1 42 0.0015 29.9 4.7 48 272-323 54-101 (133)
19 1rlw_A Phospholipase A2, CALB 33.1 2.4E+02 0.0082 24.4 9.5 61 271-338 49-110 (126)
20 2nq3_A Itchy homolog E3 ubiqui 32.3 2.2E+02 0.0077 27.0 9.8 62 271-338 76-141 (173)
21 2b3r_A Phosphatidylinositol-4- 32.2 79 0.0027 28.5 6.2 65 271-338 64-129 (134)
22 3n5a_A Synaptotagmin-7; calciu 31.6 54 0.0018 29.0 4.9 50 271-321 61-110 (138)
23 3m7f_B E3 ubiquitin-protein li 31.3 86 0.003 29.5 6.6 50 271-324 54-103 (176)
24 1w15_A Synaptotagmin IV; metal 31.0 77 0.0026 28.9 6.0 49 271-320 75-123 (153)
25 1tjx_A Similar to synaptotagmi 30.9 70 0.0024 29.5 5.7 50 271-321 70-119 (159)
26 2cjt_A UNC-13 homolog A, MUNC1 30.1 95 0.0032 28.2 6.4 46 273-323 43-88 (131)
27 3nsj_A Perforin-1; pore formin 28.8 1.2E+02 0.0042 34.6 8.3 57 271-331 433-489 (540)
28 3fdw_A Synaptotagmin-like prot 27.8 81 0.0028 28.6 5.5 65 271-338 69-133 (148)
29 3fbk_A RGS3, RGP3, regulator o 26.1 1E+02 0.0034 28.3 5.9 66 271-339 71-137 (153)
30 2fk9_A Protein kinase C, ETA t 25.8 1.3E+02 0.0046 28.5 6.8 63 271-338 80-144 (157)
31 2r83_A Synaptotagmin-1; C2A-C2 22.1 1.6E+02 0.0055 29.5 7.0 64 272-338 63-126 (284)
32 2q3x_A Regulating synaptic mem 21.9 1.1E+02 0.0037 28.8 5.3 62 271-339 76-139 (171)
33 1rh8_A Piccolo protein; beta-s 20.7 83 0.0028 28.1 4.1 62 274-338 75-137 (142)
34 2cjs_A UNC-13 homolog A, MUNC1 20.1 1.3E+02 0.0046 28.6 5.6 45 273-322 52-96 (167)
No 1
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=62.32 E-value=14 Score=33.51 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=37.7
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecC
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPM 322 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~ 322 (803)
......+|+.-|++.+... -.|.|+||..|..+++...|...+.|..
T Consensus 58 ~~t~nP~WnE~f~f~v~~~-----~~L~~~V~d~d~~~~dd~iG~~~i~l~~ 104 (136)
T 1gmi_A 58 QKTNSPAWHDEFVTDVCNG-----RKIELAVFHDAPIGYDDFVANCTIQFEE 104 (136)
T ss_dssp SSCSSCEEEEEEEEEEEEE-----CEEEEEEEECCSSSSCEEEEEEEEEHHH
T ss_pred CCCcCCccCCEEEEEecCC-----CEEEEEEEeCCCCCCCCEEEEEEEEHHH
Confidence 3346789999999887432 6899999999999999999877777643
No 2
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.61 E-value=18 Score=32.51 Aligned_cols=52 Identities=12% Similarity=0.216 Sum_probs=40.9
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecC
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPM 322 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~ 322 (803)
......+|+.-|++.+.......--.|.|+||..|.++++...|...+.|-.
T Consensus 46 ~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~ 97 (140)
T 2dmh_A 46 DNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKD 97 (140)
T ss_dssp CSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGG
T ss_pred cCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHH
Confidence 3346789999888887544444567899999999999999999888777754
No 3
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=49.58 E-value=26 Score=31.62 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=44.2
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCC-ceeEEEEEEeEecc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSP-GTHNIDCHTWRPLV 338 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~P-G~H~i~V~tWrP~~ 338 (803)
......+|+.-|.+.+....+.. ..|.|+||..|.++++...|-..+.|-.-. |. ....|.|..
T Consensus 77 ~~t~nP~wne~f~f~v~~~~l~~-~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~ 141 (143)
T 3f04_A 77 RKTLNPVFNEQFTFKVPYSELGG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH---VTEEWRDLQ 141 (143)
T ss_dssp CSCSSCEEEEEEEECCCHHHHTT-CEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTS---CEEEEEECB
T ss_pred cCCCCCcCcCeEEEeecHhhcCC-CEEEEEEEeCCCCCCCceEEEEEEEHHHccCCC---CcceEEECc
Confidence 33466899988877654333322 589999999999999999988877765442 32 234677653
No 4
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=47.67 E-value=22 Score=32.37 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=45.7
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCCceeEEEEEEeEecc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSPGTHNIDCHTWRPLV 338 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~PG~H~i~V~tWrP~~ 338 (803)
...-..+|+.-|.+.+....+.. ..|.|+||..|.++++...|...+.|-.....+ ....|.+..
T Consensus 67 ~~tlnP~wnE~f~f~v~~~~l~~-~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~--~~~~W~~L~ 131 (138)
T 1wfm_A 67 KRQLHTTWEEGLVLPLAEEELPT-ATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL--GAAQWGELK 131 (138)
T ss_dssp CCCSSEECSSCEEEECCTTSSTT-CEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT--TCCEEEECC
T ss_pred cCCCCCcCCceEEEEecHHHcCC-CEEEEEEEECCCCCCCcEEEEEEEEcccccCcc--cccceeeCc
Confidence 44567999999998865444433 579999999999999999887766665543222 334576654
No 5
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=45.61 E-value=30 Score=31.77 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=45.5
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCC-CceeEEEEEEeEecc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMS-PGTHNIDCHTWRPLV 338 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~-PG~H~i~V~tWrP~~ 338 (803)
......+|+.-|.+.+....+. =..|.|+||..|.++++...|...+.|... .|. .+..|.+..
T Consensus 85 ~~t~nP~wne~f~f~v~~~~l~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~ 149 (152)
T 1rsy_A 85 RKTLNPVFNEQFTFKVPYSELG-GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH---VTEEWRDLQ 149 (152)
T ss_dssp TTCSSCEEEEEEEECCCHHHHT-TCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS---CEEEEEECB
T ss_pred CCCCCCcCcccEEEeecHHHcC-CCEEEEEEEECCCCCCCcEEEEEEEEchhccCCC---CcceEEECC
Confidence 3446799999888865432221 267999999999999999998887777654 343 346677653
No 6
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=44.92 E-value=34 Score=30.39 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=45.5
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCCceeEEEEEEeEeccc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSPGTHNIDCHTWRPLVI 339 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~PG~H~i~V~tWrP~~s 339 (803)
.......|+.-|.+.+...... ..|.|+||..|..+++...|-..+.|-.-.... ...|.+...
T Consensus 61 ~~t~nP~wne~f~f~~~~~~~~--~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~W~~L~~ 124 (137)
T 3rdl_A 61 RSTLNPQWNESFTFKLKPSDKD--RRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP---ASGWYKLLN 124 (137)
T ss_dssp CSCSSCEEEEEEEEECCGGGGG--CEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC---EEEEEECBC
T ss_pred cCCCCCCcccEEEEEcCchhcC--CEEEEEEEECCCCCCCceEEEEEEeHHHhccCc---cCceEECcC
Confidence 3446789998887776433222 379999999999999999888777766543322 467877653
No 7
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=44.59 E-value=1.2e+02 Score=27.05 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=37.8
Q ss_pred CCCCceeeeccEEEE-EEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCC
Q psy4567 271 VYDKLTVWSHPIDVH-FATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSP 324 (803)
Q Consensus 271 ~~~~~avwshP~Dl~-f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~P 324 (803)
......+|+.-|.+. +....+. =..|.|+||..|.++++...|...+.|-.-.
T Consensus 74 ~~t~nP~wne~f~f~~~~~~~~~-~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~ 127 (142)
T 2chd_A 74 RNTRNPVWNETLQYHGITEEDMQ-RKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127 (142)
T ss_dssp CSCSSCEEEEEEEEESCCHHHHH-HCEEEEEEEEECTTSCEEEEEEEEEEGGGCC
T ss_pred CCCCCCcCcCEEEEcccCHHHcc-CCEEEEEEEECCCCCCCcEEEEEEEEHHHcC
Confidence 345678999987766 3222221 1379999999999999999988777766543
No 8
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=44.58 E-value=32 Score=31.45 Aligned_cols=62 Identities=11% Similarity=0.278 Sum_probs=44.4
Q ss_pred CCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCCceeEEEEEEeEecc
Q psy4567 272 YDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSPGTHNIDCHTWRPLV 338 (803)
Q Consensus 272 ~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~PG~H~i~V~tWrP~~ 338 (803)
.....+|+.-|.+........ ..|.|+||..|.++++...|-..+.|..-... ....|.|..
T Consensus 77 ~t~nP~wne~f~f~v~~~~~~--~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~---~~~~W~~L~ 138 (149)
T 1a25_A 77 CSLNPEWNETFRFQLKESDKD--RRLSVEIWDWDLTSRNDFMGSLSFGISELQKA---GVDGWFKLL 138 (149)
T ss_dssp SCSSCEEEEEEEEECCSGGGG--CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC---CEEEEEECB
T ss_pred CCCCCcCCcEEEEEeccccCC--CEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC---ccCCeEEcc
Confidence 356789999888876432222 47999999999999999988877776543322 256687765
No 9
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=44.34 E-value=28 Score=30.75 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=37.7
Q ss_pred CCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCC--eEEEEEEEEEecCCCceeEEEEEEeEec
Q psy4567 272 YDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGR--GEIYGYGFTNVPMSPGTHNIDCHTWRPL 337 (803)
Q Consensus 272 ~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR--~~l~GYG~~hLP~~PG~H~i~V~tWrP~ 337 (803)
.....+|+..|.+......-..-..|.|+||..|..++ +...|-..+.|....... ...|-|.
T Consensus 64 ~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~---~~~W~~L 128 (129)
T 2bwq_A 64 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD---EPHWYKL 128 (129)
T ss_dssp SBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS---CEEEEEC
T ss_pred CCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc---CCccEEC
Confidence 34678999988876422111123589999999999997 888887777766544321 4566653
No 10
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=43.34 E-value=46 Score=30.36 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=37.7
Q ss_pred CCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCC
Q psy4567 272 YDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMS 323 (803)
Q Consensus 272 ~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~ 323 (803)
.....+|+.-|.+..... =..|.|+||..|.++++...|...+.|-.-
T Consensus 67 ~t~nP~wne~f~f~v~~~----~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l 114 (153)
T 3b7y_A 67 KSLNPKWNEEILFRVHPQ----QHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114 (153)
T ss_dssp SCSSCCCCEEEEEEECTT----TCEEEEEEEECCSSSCCEEEEEEEEECCSC
T ss_pred CCCCCCCCCEEEEEecCC----CCEEEEEEEECCCCcCCCeeEEEEEEHHHc
Confidence 346789999888876432 268999999999999999998777776543
No 11
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=41.60 E-value=28 Score=31.06 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=38.8
Q ss_pred CCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecC
Q psy4567 272 YDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPM 322 (803)
Q Consensus 272 ~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~ 322 (803)
.....+|+..|++.... .-..|.|+||..|.++++...|...+.|..
T Consensus 52 ~~~nP~Wne~f~f~v~~----~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~ 98 (136)
T 1wfj_A 52 MGTTPEWNETFIFTVSE----GTTELKAKIFDKDVGTEDDAVGEATIPLEP 98 (136)
T ss_dssp CCSSCEEEEEEEEEEES----SCCEEEEEECCSSSCTTTCCSEEEEEESHH
T ss_pred CCCCCccCcEEEEEECC----CCCEEEEEEEECCCCCCCceEEEEEEEHHH
Confidence 45779999999998763 446899999999999999999887777654
No 12
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=40.92 E-value=98 Score=27.41 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCC---eEEEEEEEEEe
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGR---GEIYGYGFTNV 320 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR---~~l~GYG~~hL 320 (803)
...-..+|+..|.+..... . .|.|+||..|.+++ +...|-..+.+
T Consensus 47 ~~t~nP~wne~f~f~v~~~--~---~l~~~v~d~d~~~~~~~d~~lG~~~i~l 94 (132)
T 3pyc_A 47 KNTLDPKWNQHYDLYVGKT--D---SITISVWNHKKIHKKQGAGFLGCVRLLS 94 (132)
T ss_dssp SSCSSCEEEEEEEEEEETT--C---CEEEEEEEGGGTTSSTTTTEEEEEEECH
T ss_pred CCCCCCCccCEEEEEeCCC--C---EEEEEEEECCCCCCCCCCCceEEEEEeH
Confidence 3446689999888877532 2 49999999999987 67777655543
No 13
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=40.59 E-value=1e+02 Score=27.81 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecC-----------CCeEEEEEEEEEecCCCceeEEEEEEeEecc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKF-----------GRGEIYGYGFTNVPMSPGTHNIDCHTWRPLV 338 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~-----------gR~~l~GYG~~hLP~~PG~H~i~V~tWrP~~ 338 (803)
.......|+.-|.+...... -.|.|+||..|.. +++...|-..+.|-...+. ...|.|..
T Consensus 57 ~~t~nP~Wne~f~f~v~~~~----~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~----~~~w~~L~ 127 (148)
T 3kwu_A 57 YGNLNPVWEENFHFECHNSS----DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE----MDVWYNLD 127 (148)
T ss_dssp CSCSSCEEEEEEEEEECSTT----CEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCCSE----EEEEEECB
T ss_pred CCCCCCCcccEEEEEecCCC----CEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCcCC----CCEEEEcc
Confidence 34467899998777664322 5899999999986 8999998888877666443 34666654
No 14
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=38.66 E-value=34 Score=30.55 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=43.9
Q ss_pred CCCceeeeccEEEEEEc-cCCCCCCeEEEEEEEeecCCC--eEEEEEEEEEecCCCceeEEEEEEeEecc
Q psy4567 272 YDKLTVWSHPIDVHFAT-RGVQGWPKLHLQVYHYDKFGR--GEIYGYGFTNVPMSPGTHNIDCHTWRPLV 338 (803)
Q Consensus 272 ~~~~avwshP~Dl~f~s-~~~~GWPqLvl~V~s~D~~gR--~~l~GYG~~hLP~~PG~H~i~V~tWrP~~ 338 (803)
.....+|+..|.+.... ..+ .-..|.|+||..|.+++ +...|...+.|......- ...|.|..
T Consensus 67 ~t~nP~wne~f~f~~~~~~~~-~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~---~~~W~~L~ 132 (141)
T 1v27_A 67 KTLEPKWNQTFIYSPVHRREF-RERMLEITLWDQARVREEESEFLGEILIELETALLDD---EPHWYKLQ 132 (141)
T ss_dssp SCSSCCCCCCCEECSCCTTGG-GTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS---EEEEEECB
T ss_pred CCCCCccccEEEEccCCHHHh-cCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC---CCceEECc
Confidence 34678999988887322 222 22689999999999997 888888777766543321 56787765
No 15
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=37.18 E-value=64 Score=28.92 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=42.9
Q ss_pred CCCceeeeccEEEE-EEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCC-ceeEEEEEEeEecc
Q psy4567 272 YDKLTVWSHPIDVH-FATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSP-GTHNIDCHTWRPLV 338 (803)
Q Consensus 272 ~~~~avwshP~Dl~-f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~P-G~H~i~V~tWrP~~ 338 (803)
.....+|+.-|.+. .....+ .-..|.|+||..|.++++...|...+.|-.-. +... ...|++.-
T Consensus 67 ~t~nP~wne~f~f~~v~~~~~-~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~--~~~~~~l~ 132 (138)
T 1ugk_A 67 KTLDPAFDETFTFYGIPYTQI-QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK--MLMNREII 132 (138)
T ss_dssp SCSSCEEEEEEEEECCCSTTG-GGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCC--EEEEEECB
T ss_pred CCCCCcEeeEEEEcCcCHHHh-ccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCc--chhhhhhh
Confidence 44678999888775 332222 22589999999999999999888777765542 3222 25566543
No 16
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.04 E-value=34 Score=30.91 Aligned_cols=64 Identities=20% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCCCceeeeccEEEEEEc-cCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCC-ceeEEEEEEeEecc
Q psy4567 271 VYDKLTVWSHPIDVHFAT-RGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSP-GTHNIDCHTWRPLV 338 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s-~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~P-G~H~i~V~tWrP~~ 338 (803)
......+|+.-|.+.... ..+ .=..|.|+||..|.++++...|...+.|..-. |. ....|.|..
T Consensus 69 ~~t~nP~wne~f~f~~~~~~~~-~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~ 134 (141)
T 2d8k_A 69 RKNLNPHWNETFLFEGFPYEKV-VQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ---MQTFWKDLK 134 (141)
T ss_dssp TTCSSCCCCEEEEECSCCHHHH-TTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTS---CEEEEECCE
T ss_pred cCCCCCccccEEEECccCHHHc-ccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCC---CccEEEECc
Confidence 344678999888775311 111 12579999999999999999887776665432 32 345677654
No 17
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=34.97 E-value=2e+02 Score=26.53 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=37.8
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecC
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPM 322 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~ 322 (803)
......+|+.-|.+......+. =..|.|+||..|..+++...|...+.|-.
T Consensus 82 ~~t~nP~wne~f~f~v~~~~l~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~ 132 (166)
T 2cm5_A 82 KKTLNPEFNEEFFYDIKHSDLA-KKSLDISVWDYDIGKSNDYIGGCQLGISA 132 (166)
T ss_dssp CSCSSCEEEEEEEEECCGGGGG-GCEEEEEEEECCSSSCCEEEEEEEEETTC
T ss_pred cCCCCCcccceEEEEcchHhcC-CCEEEEEEEECCCCCCCcEEEeEEEeccc
Confidence 3456789999888876433332 25899999999999999998876666543
No 18
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=34.10 E-value=42 Score=29.90 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=37.8
Q ss_pred CCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCC
Q psy4567 272 YDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMS 323 (803)
Q Consensus 272 ~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~ 323 (803)
......|+..|.+.... +. ..|.|+||..|..+++...|...+.|-.-
T Consensus 54 ~t~nP~wne~f~f~~~~--~~--~~l~i~V~d~d~~~~~~~lG~~~i~l~~l 101 (133)
T 2ep6_A 54 KNLNPEWNKVFTFPIKD--IH--DVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101 (133)
T ss_dssp SCSSCCCCEEEEEEESC--TT--CEEEEEEEEEETTEEEEECCBCEEEGGGC
T ss_pred CCCCCccccEEEEEecC--CC--CEEEEEEEECCCCCCCCeeEEEEEEHHHc
Confidence 34678999988887742 22 57999999999999999998887776544
No 19
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=33.06 E-value=2.4e+02 Score=24.39 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=41.4
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCC-CceeEEEEEEeEecc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMS-PGTHNIDCHTWRPLV 338 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~-PG~H~i~V~tWrP~~ 338 (803)
......+|+..|.+...... -..|.|+||..|..+ +...|...+.|..- .|. ....|.|..
T Consensus 49 ~~t~nP~wne~f~f~v~~~~---~~~l~i~V~d~d~~~-~~~iG~~~i~l~~l~~~~---~~~~~~~L~ 110 (126)
T 1rlw_A 49 NNDINPVWNETFEFILDPNQ---ENVLEITLMDANYVM-DETLGTATFTVSSMKVGE---KKEVPFIFN 110 (126)
T ss_dssp TTCSSCEEEEEEEEEECTTS---CCEEEEEEEECCSSC-CEEEEEEEEEGGGSCTTC---EEEEEEEET
T ss_pred CCCCCCcccceEEEEecCCC---CCEEEEEEEECCCCC-CceeEEEEEEHHHccCCC---cEEEEEEcC
Confidence 34467899999998874332 358999999999875 77888777766543 333 233455543
No 20
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=32.28 E-value=2.2e+02 Score=27.00 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=43.5
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCC----CceeEEEEEEeEecc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMS----PGTHNIDCHTWRPLV 338 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~----PG~H~i~V~tWrP~~ 338 (803)
...-..+|+.-|.+.+. . =..|.|+||..|.++++...|...+.|-.- +|.. -.+..|.+..
T Consensus 76 ~~tlnP~Wne~f~f~v~---~--~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~-~~~~~~~~L~ 141 (173)
T 2nq3_A 76 NNTNSPKWKQPLTVIVT---P--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKL-EEVVVTLQLG 141 (173)
T ss_dssp SSCSSCEEEEEEEEEEC---T--TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEE-SSEEEEEEEE
T ss_pred CCCCCCeECCEEEEEeC---C--CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCc-ceeEEEEECc
Confidence 34467899998888762 2 457999999999999999999877776532 2221 1245666554
No 21
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=32.19 E-value=79 Score=28.47 Aligned_cols=65 Identities=9% Similarity=0.093 Sum_probs=43.9
Q ss_pred CCCCceeeeccEEEE-EEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCCceeEEEEEEeEecc
Q psy4567 271 VYDKLTVWSHPIDVH-FATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSPGTHNIDCHTWRPLV 338 (803)
Q Consensus 271 ~~~~~avwshP~Dl~-f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~PG~H~i~V~tWrP~~ 338 (803)
......+|+.-|.+. +....+. =..|.|+||..|.++++...|-..+.|-...-.. ....|.|..
T Consensus 64 ~~t~nP~wnE~f~f~~v~~~~l~-~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~~~W~~L~ 129 (134)
T 2b3r_A 64 RKTRNPTFNEMLVYSGYSKETLR-QRELQLSVLSAESLRENFFLGGITLPLKDFNLSK--ETVKWYQLT 129 (134)
T ss_dssp CSCSSCEEEEEEEEESCCHHHHT-TCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTS--CEEEEEECB
T ss_pred cCCCCCCCccEEEECCcCHHHhC-cCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCC--CcceeEECC
Confidence 344668999988777 5433222 2589999999999999998887776665443212 345677654
No 22
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=31.65 E-value=54 Score=29.03 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=36.4
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEec
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVP 321 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP 321 (803)
......+|+.-|.+.+....+.. ..|.|+||..|.++++...|-..+.|-
T Consensus 61 ~~t~nP~wne~f~f~v~~~~l~~-~~l~~~V~d~~~~~~~~~lG~~~i~l~ 110 (138)
T 3n5a_A 61 KRNLNPIFNESFAFDIPTEKLRE-TTIIITVMDKDKLSRNDVIGKIYLSWK 110 (138)
T ss_dssp SSCSSCEEEEEEEEECCGGGGGG-EEEEEEEEECCSSSCCEEEEEEEESSS
T ss_pred cCCCCCcCcceEEEECChhhcCc-eEEEEEEEECCCCCCCcEEEEEEEccc
Confidence 34466899988887754433322 579999999999999998877665543
No 23
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=31.35 E-value=86 Score=29.45 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=34.3
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCC
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSP 324 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~P 324 (803)
......+|+.-|.+.... .-..|.|+||..|.++++...|-..+.|-...
T Consensus 54 ~~t~nP~Wne~f~f~v~~----~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~ 103 (176)
T 3m7f_B 54 KKSLNPKWNEEILFRVLP----QRHRILFEVFDENRLTRDDFLGQVDVPLYPLP 103 (176)
T ss_dssp SSCSSCEEEEEEEEEECT----TTCEEEEEEEECC----CEEEEEEEEESCSCC
T ss_pred CCCCCCcccceEEEEEcC----CCCEEEEEEEECCCCCCCcEEEEEEEEHHHcc
Confidence 345678999988877642 22689999999999999998887776665544
No 24
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=31.03 E-value=77 Score=28.87 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=35.7
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEe
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNV 320 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hL 320 (803)
......+|+..|.+......+. =-.|.|+||..|.++++...|-..+.|
T Consensus 75 ~~t~nP~wne~f~f~v~~~~l~-~~~l~v~V~d~d~~~~~~~lG~~~i~l 123 (153)
T 1w15_A 75 KCTPNAVFNELFVFDIPCESLE-EISVEFLVLDSERGSRNEVIGRLVLGA 123 (153)
T ss_dssp CSCSSEEEEEEEEEECCSSSST-TEEEEEEEEECCTTSCCEEEEEEEEST
T ss_pred cCCCCCeecceEEEECCHHHhC-ceEEEEEEEeCCCCCCCcEEEEEEECC
Confidence 3456799999888876443332 257999999999999999887554443
No 25
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=30.92 E-value=70 Score=29.45 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=36.9
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEec
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVP 321 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP 321 (803)
......+|+.-|.+......+. =..|.|+||..|.++++...|...+.|-
T Consensus 70 ~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~d~~~~~~~iG~~~i~l~ 119 (159)
T 1tjx_A 70 KNTLNPYYNESFSFEVPFEQIQ-KVQVVVTVLDYDKIGKNDAIGKVFVGYN 119 (159)
T ss_dssp CSCSSCEEEEEEEEECCGGGGG-GCEEEEEEEECCSSSCCEEEEEEEEETT
T ss_pred cCCCCCcccceEEEEcCHHHhC-CcEEEEEEEECCCCCCCceEEEEEECCC
Confidence 3456789999888876433332 2469999999999999999887666554
No 26
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=30.05 E-value=95 Score=28.16 Aligned_cols=46 Identities=9% Similarity=0.177 Sum_probs=36.0
Q ss_pred CCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCC
Q psy4567 273 DKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMS 323 (803)
Q Consensus 273 ~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~ 323 (803)
....+||.-|.+.... .. -.|.|+||..| .+++...|-..+.|-..
T Consensus 43 t~nP~WnE~f~f~v~~--~~--~~L~~~V~D~d-~~~dd~iG~~~i~l~~l 88 (131)
T 2cjt_A 43 GSQPSWEQDFMFEINR--LD--LGLTVEVWNKG-LIWDTMVGTVWIPLRTI 88 (131)
T ss_dssp SSSCEEEEEEEEEECC--CS--SEEEEEEEECC-SSCEEEEEEEEEEGGGS
T ss_pred CCCceECCEEEEEEeC--CC--CeEEEEEEECC-CCCCCeEEEEEEEHHHh
Confidence 4678999988887642 22 36999999999 99999999887777543
No 27
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=28.77 E-value=1.2e+02 Score=34.62 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=41.7
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCCceeEEEE
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSPGTHNIDC 331 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~PG~H~i~V 331 (803)
.+....+|+.-|++.+.... .=-.|.|+||-.|..++++.. |.+.+++.+|.|+..+
T Consensus 433 k~tlNP~Wne~f~f~~~~~~--~~~~L~~~V~D~D~~~~dD~L--G~~~~~L~~g~~~~~~ 489 (540)
T 3nsj_A 433 WNNNNPRWTDKMDFENVLLS--TGGPLRVQVWDADYGWDDDLL--GSCDRSPHSGFHEVTC 489 (540)
T ss_dssp CSCSSCBCCCCEEEEEEETT--TCCCEEEEEEECCSSSCCEEE--EEEEECCCSEEEEEEE
T ss_pred cCCCCCCCCeEEEEEEecCC--CCCEEEEEEEECCCCCCCCEE--EEEEEEeeCCcEEEEE
Confidence 33467899998888764221 224699999999999887765 5666888899887554
No 28
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=27.79 E-value=81 Score=28.63 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=43.1
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCCceeEEEEEEeEecc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSPGTHNIDCHTWRPLV 338 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~PG~H~i~V~tWrP~~ 338 (803)
......+|+.-|.+......+. --.|.|+||..|.++++...|-..+.|..-.-.. ....|.|..
T Consensus 69 ~~t~nP~wne~f~f~v~~~~~~-~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~--~~~~W~~L~ 133 (148)
T 3fdw_A 69 RDTVNPLYDETLRYEIPESLLA-QRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK--KLDHCLPLH 133 (148)
T ss_dssp SSCSSCEEEEEEEEECCSTTGG-GCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHC--CSEEEEECB
T ss_pred CCCCCCcEeeEEEEEeChhHhC-ceEEEEEEEECCCCcCCcEEEEEEEEcccccccC--CccceEECc
Confidence 3446689999888775433221 2469999999999999999887777665432111 233677664
No 29
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=26.06 E-value=1e+02 Score=28.29 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=43.9
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCC-eEEEEEEEEEecCCCceeEEEEEEeEeccc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGR-GEIYGYGFTNVPMSPGTHNIDCHTWRPLVI 339 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR-~~l~GYG~~hLP~~PG~H~i~V~tWrP~~s 339 (803)
......+|+.-|.+.+....+.. .|.|+||..|.+++ +...|-..+.|-.-.. ....+..|-+...
T Consensus 71 ~~t~nP~wne~f~f~v~~~~~~~--~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~-~~~~~~~W~~L~~ 137 (153)
T 3fbk_A 71 PDCRDPAFHEHFFFPVQEEDDQK--RLLVTVWNRASQSRQSGLIGCMSFGVKSLLT-PDKEISGWYYLLG 137 (153)
T ss_dssp TTCSSCEEEEEEEEECCGGGTTS--EEEEEEEECCSSGGGCEEEEEEEEEHHHHTC---CCEEEEEECBC
T ss_pred CCCCCCccccEEEEecccHHhCC--EEEEEEEeCCCCCCCCcEEEEEEEEHHHhcC-CCCccccEEECCC
Confidence 34466899998888764444443 59999999999987 8888776666544321 1223456877653
No 30
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=25.79 E-value=1.3e+02 Score=28.50 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=43.4
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCC-ce-eEEEEEEeEecc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSP-GT-HNIDCHTWRPLV 338 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~P-G~-H~i~V~tWrP~~ 338 (803)
......+||.-|++..... -.|.|+||..|..+++...|-..+.|-.-. +. ..-.+..|.|..
T Consensus 80 ~ktlnP~WNE~F~f~v~~~-----~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~ 144 (157)
T 2fk9_A 80 QKTNKPTYNEEFCANVTDG-----GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE 144 (157)
T ss_dssp SSCSSCEEEEEEEEEEEEE-----CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB
T ss_pred CCCCCCccCcEEEEEcCCC-----CEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC
Confidence 3446689999998876432 389999999999999999887777664322 10 112456677654
No 31
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=22.06 E-value=1.6e+02 Score=29.46 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=45.2
Q ss_pred CCCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCCceeEEEEEEeEecc
Q psy4567 272 YDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSPGTHNIDCHTWRPLV 338 (803)
Q Consensus 272 ~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~PG~H~i~V~tWrP~~ 338 (803)
......|+.-|.+.+....+. -..|.|+||..|.++++...|...+.|..-.... .+..|.|..
T Consensus 63 ~~~nP~wne~f~f~v~~~~~~-~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~~~w~~L~ 126 (284)
T 2r83_A 63 KTLNPVFNEQFTFKVPYSELA-GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH--VTEEWRDLQ 126 (284)
T ss_dssp SCSSCEEEEEEEECCCGGGCT-TCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSS--CEEEEEECB
T ss_pred CCCCCeeCceEEEEechHHhC-cCEEEEEEEECCCCCCCceeEEEEEcchhcccCC--cceeEEEee
Confidence 346789999888875433332 2589999999999999999988877766543222 345677664
No 32
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=21.89 E-value=1.1e+02 Score=28.78 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=43.7
Q ss_pred CCCCceeeeccEEEEEEccCCCCCCeEEEEEE-EeecCCCeEEEEEEEEEecCCC-ceeEEEEEEeEeccc
Q psy4567 271 VYDKLTVWSHPIDVHFATRGVQGWPKLHLQVY-HYDKFGRGEIYGYGFTNVPMSP-GTHNIDCHTWRPLVI 339 (803)
Q Consensus 271 ~~~~~avwshP~Dl~f~s~~~~GWPqLvl~V~-s~D~~gR~~l~GYG~~hLP~~P-G~H~i~V~tWrP~~s 339 (803)
...-..+|+.-|.+... +. =..|.|+|| ..|.++++...|...+.|-... |. .+..|.|...
T Consensus 76 ~~t~nP~wne~f~f~v~---~~-~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~---~~~~W~~L~~ 139 (171)
T 2q3x_A 76 RKTLDPLYQQSLVFDES---PQ-GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSS---MVIGWYKLFP 139 (171)
T ss_dssp CSCSSCEEEEEEECSSC---CT-TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTS---CEEEEEECBC
T ss_pred CCCCCCCCCcEEEEEec---CC-CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCC---CcceeEECCC
Confidence 33467899987777642 12 278999999 9999999999887766665443 43 3567887763
No 33
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=20.71 E-value=83 Score=28.13 Aligned_cols=62 Identities=18% Similarity=0.407 Sum_probs=40.1
Q ss_pred CceeeeccEEEE-EEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecCCCceeEEEEEEeEecc
Q psy4567 274 KLTVWSHPIDVH-FATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSPGTHNIDCHTWRPLV 338 (803)
Q Consensus 274 ~~avwshP~Dl~-f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~~PG~H~i~V~tWrP~~ 338 (803)
...+|+.-|.+. +....+. --.|.|+||..|.++++...|...+.|-..+ .......|.|..
T Consensus 75 ~nP~wne~f~f~~v~~~~l~-~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~--~~~~~~~W~~L~ 137 (142)
T 1rh8_A 75 LNPEWNQTVIYKSISMEQLM-KKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS--HLDNTPRWYPLK 137 (142)
T ss_dssp HSCEEEEEEEECSCCHHHHT-TCEEEEEEEEECSSSCEEEEEEEEEETTSCG--GGTTCCEEEECB
T ss_pred CCCCCCCEEEECCcCHHHcc-CCEEEEEEEECCCCCCCceEEEEEEeccccc--cCCCCCeEEECC
Confidence 568999887775 3322221 2479999999999999998886665554322 111234676654
No 34
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=20.11 E-value=1.3e+02 Score=28.56 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCceeeeccEEEEEEccCCCCCCeEEEEEEEeecCCCeEEEEEEEEEecC
Q psy4567 273 DKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPM 322 (803)
Q Consensus 273 ~~~avwshP~Dl~f~s~~~~GWPqLvl~V~s~D~~gR~~l~GYG~~hLP~ 322 (803)
....+||.-|.+.... .. -.|.|+||..| ++++...|-..+.|-.
T Consensus 52 t~nP~WnE~f~f~v~~--~~--~~L~~~V~D~d-~~~dd~iG~~~i~L~~ 96 (167)
T 2cjs_A 52 GSQPSWEQDFMFEINR--LD--LGLTVEVWNKG-LIWDTMVGTVWIPLRT 96 (167)
T ss_dssp SSSCEEEEEEEEECCC--TT--SEEEEEEEECC-SSCCEEEEEEEEEGGG
T ss_pred CCCCCCCCEEEEEeeC--CC--CEEEEEEEECC-CCCCceEEEEEEEHHH
Confidence 4678999988877642 22 36999999999 8899999988777654
Done!