RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4567
(803 letters)
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 32.8 bits (74), Expect = 0.057
Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 2/85 (2%)
Query: 254 WKLISGKKEGQTQVDSPVYDKLT-VWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEI 312
+ + + + V L W+ R L + ++ + E
Sbjct: 41 IYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEES 100
Query: 313 YGYGFTNVPMSPGTHNIDCHTWRPL 337
G + + + + H W L
Sbjct: 101 EFLGEILIELETALLDDEPH-WYKL 124
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD
{Escherichia coli [TaxId: 562]}
Length = 413
Score = 30.7 bits (68), Expect = 0.76
Identities = 20/154 (12%), Positives = 30/154 (19%), Gaps = 9/154 (5%)
Query: 225 VHFATRGVQGW-PKLHLQVYHYDKQGGRTNWKLISGKKEGQTQVDSPVYDKLTVWSHPID 283
H + P H ++ S G + S
Sbjct: 203 AHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRI 262
Query: 284 VHFATRGVQGWPKLHLQVYHYDKFGRGEIYGYGF--------TNVPMSPGTHNIDCHTWR 335
A + H F N ++ H I
Sbjct: 263 NSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQM 322
Query: 336 PLVIQLGADRSGGVAVPTLAVNEDDTKLTHKTTS 369
L + P L + DD K +H T
Sbjct: 323 TNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATV 356
>d2biba1 b.109.1.1 (A:309-541) Teichoic acid phosphorylcholine
esterase Pce (LytD), C-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 233
Score = 30.1 bits (66), Expect = 0.81
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 2/106 (1%)
Query: 232 VQGWPKLHLQVYHYDKQGG--RTNWKLISGKKEGQTQVDSPVYDKLTVWSHPIDVHFATR 289
GW ++ + Y++++ G + WK + T + + + + +
Sbjct: 26 AVGWNEIEGEWYYFNQTGILLQNQWKKWNNHWFYLTDSGASAKNWKKIDGIWYYFNKENQ 85
Query: 290 GVQGWPKLHLQVYHYDKFGRGEIYGYGFTNVPMSPGTHNIDCHTWR 335
GW + Q Y+ D G + + W
Sbjct: 86 MEIGWVQDKEQWYYLDVDGSMKTGWLQYMGQWYYFAPSGEMKMGWV 131
>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 107
Score = 27.6 bits (61), Expect = 2.0
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 541 LRQGVRPSKTPYLESGRAANVKSILPGSVAAQS-ELQSRSADLDFERDQCWCFCDLKEFT 599
+ G S V I+ AA+ LQ +R DL T
Sbjct: 25 IIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ------IHDRIIEVNGRDLSRAT 78
Query: 600 ECEAIQ 605
+A++
Sbjct: 79 HDQAVE 84
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 27.4 bits (60), Expect = 4.6
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 253 NWKLISGKKEGQTQVDSPVYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEI 312
+ L KK+ +T+V L + G L + VY +D+F + +I
Sbjct: 61 VFLLPDKKKKFETKV---HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDI 117
Query: 313 YGYGFTNVPMSPGTHNIDCHTWRPL 337
G VPM+ WR L
Sbjct: 118 IGE--FKVPMNTVDFGHVTEEWRDL 140
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 27.8 bits (60), Expect = 4.9
Identities = 25/188 (13%), Positives = 53/188 (28%), Gaps = 3/188 (1%)
Query: 135 GGASGVGANGVGASGGVAVPTLAVNEDDTKLTHKTTSIPRNPITRVAVQDCPCDITVSTN 194
GG+ G+ A A V + ++ + + +
Sbjct: 11 GGSGGLAAAKEAAKFDKKV--MVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLG 68
Query: 195 WKLISGKKEGQTQVDSPVYDKLTAWSHPID-VHFATRGVQGWPKLHLQVYHYDKQGGRTN 253
L + G D+ +D + + G + + VY
Sbjct: 69 QALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGP 128
Query: 254 WKLISGKKEGQTQVDSPVYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEIY 313
K+++ +G+ +V S + P + + + V +K G+ +
Sbjct: 129 HKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKINEKTGKIPVT 188
Query: 314 GYGFTNVP 321
TNVP
Sbjct: 189 DEEQTNVP 196
>d2dkqa1 b.55.1.2 (A:8-154) Tensin {Human (Homo sapiens) [TaxId:
9606]}
Length = 147
Score = 26.9 bits (59), Expect = 6.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 586 RDQCWCFCDLKEFTECEAIQRHIFKLLLGPVR 617
+ C F +L AI I K+LLG +
Sbjct: 116 ENVCHLFAELDPDQPAGAIVTFITKVLLGQRK 147
>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic
domain {Enterococcus faecium [TaxId: 1352]}
Length = 122
Score = 26.6 bits (59), Expect = 6.4
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 196 KLISGKKEGQTQVDSPVYDKLTAWSHP 222
L GQ SP+ T HP
Sbjct: 96 ALKKAILAGQDFTRSPIVQGGTTADHP 122
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 26.8 bits (58), Expect = 6.4
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 253 NWKLISGKKEGQTQVDSPVYDKLTVWSHPIDVHFATRGVQGWPKLHLQVYHYDKFGRGEI 312
+ L KK+ QT+V + + + V A + KLH VY +D+F R ++
Sbjct: 45 IYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQR---KLHFSVYDFDRFSRHDL 101
Query: 313 YGYGFTNVPMSPGTHNIDCHTWRPL 337
G + + D WR +
Sbjct: 102 IGQVVLDNLLELAEQPPDRPLWRDI 126
>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 225
Score = 27.4 bits (61), Expect = 6.5
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 135 GGASGVGANGVGASGGVAVPTLAVNEDDTKLTHKTTSIPRNPI 177
GG+S VG+ V G+ +P + +D +L + N +
Sbjct: 52 GGSSLVGSLSVANKYGLLLPKIV---EDEELDRIKNFLKENNL 91
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 212
Score = 26.9 bits (59), Expect = 9.0
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 613 LGPVRYLDPDTYIASTGDPSIYNL 636
L VR P YI TG ++L
Sbjct: 8 LEGVR-HRPAMYIGGTGVEGYHHL 30
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase
LysA {Escherichia coli [TaxId: 562]}
Length = 174
Score = 26.5 bits (58), Expect = 9.9
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 29/110 (26%)
Query: 396 CCCDNDCSARDRLVFSHCLPLPILSSSQYCFSKQLIYIKNSPHYIVTQPDNSLLCIETEN 455
C D + LP + + + + ++ Y +
Sbjct: 93 LCESGDVFTQQEGGNVETRALPEVK------AGDYLVLHDTGAYGAS------------- 133
Query: 456 LRSKTNF-THFRPITTLKNFAKVFDRRKRPTWSQAVLRTSSPYSLDRLPH 504
+N+ + L + + R+R T + + +L+ L H
Sbjct: 134 --MSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELL-------ALELLHH 174
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.423
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,076,882
Number of extensions: 147636
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 14
Length of query: 803
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 710
Effective length of database: 1,130,706
Effective search space: 802801260
Effective search space used: 802801260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)