BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4569
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2
          Length = 338

 Score = 25.4 bits (54), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 12  GGPQLKSPDLVYTGLDRYRGMHDEFT 37
            GP L++ D +YT L+  +G+ + FT
Sbjct: 206 AGPDLRNMDNLYTRLESAKGLKEFFT 231


>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains
 pdb|3ZYG|B Chain B, Netring2 Lam And Egf1 Domains
 pdb|3ZYI|B Chain B, Netring2 In Complex With Ngl2
          Length = 353

 Score = 25.4 bits (54), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 12  GGPQLKSPDLVYTGLDRYRGMHDEFT 37
            GP L++ D +YT L+  +G+ + FT
Sbjct: 223 AGPDLRNMDNLYTRLESAKGLKEFFT 248


>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
          Major Glyoxalase I: Structure And Biochemical
          Comparison With The Human Enzyme
 pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
          Major Glyoxalase I: Structure And Biochemical
          Comparison With The Human Enzyme
 pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
          Major Glyoxalase I: Structure And Biochemical
          Comparison With The Human Enzyme
 pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
          Major Glyoxalase I: Structure And Biochemical
          Comparison With The Human Enzyme
 pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
          Major Glyoxalase I: Structure And Biochemical
          Comparison With The Human Enzyme
 pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
          Major Glyoxalase I: Structure And Biochemical
          Comparison With The Human Enzyme
          Length = 144

 Score = 25.4 bits (54), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 34 DEFTRQFLGGGPQLKSPDLVYT---GLDRYRLHTEAMGCVHL 72
          D++T  FLG GP++ S  L  T   G+  Y+ H EA G + +
Sbjct: 43 DKYTLVFLGYGPEMSSTVLELTYNYGVTSYK-HDEAYGHIAI 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.146    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,915,682
Number of Sequences: 62578
Number of extensions: 115066
Number of successful extensions: 176
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 4
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)