Query psy4569
Match_columns 88
No_of_seqs 116 out of 187
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 20:22:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcu_A CBM29_1, non-catalytic 23.5 39 0.0013 22.0 1.7 16 58-73 64-79 (153)
2 2qsf_A RAD4, DNA repair protei 14.7 23 0.0008 27.6 -1.0 26 63-88 466-491 (533)
3 3e0r_A C3-degrading proteinase 12.5 1.4E+02 0.0048 21.0 2.6 53 11-78 105-161 (244)
4 1v5s_A MAP/microtubule affinit 10.5 87 0.003 19.8 0.9 50 32-88 42-97 (126)
5 2qn6_B Translation initiation 10.4 1.8E+02 0.0061 17.2 2.3 45 22-67 10-61 (93)
6 2l9d_A Uncharacterized protein 10.2 1.5E+02 0.005 18.5 1.8 14 25-38 23-36 (108)
7 2loj_A Putative cytoplasmic pr 9.9 1.9E+02 0.0063 16.3 2.1 20 53-72 42-61 (63)
8 1w9s_A BH0236 protein, BHCBM6; 7.6 2.5E+02 0.0084 17.1 2.2 19 56-74 59-80 (142)
9 2y8g_A Ranbp3-B, RAN-binding p 7.6 1.3E+02 0.0044 19.0 0.8 22 57-78 54-75 (138)
10 2jra_A Protein RPA2121; domain 7.4 1.7E+02 0.0059 16.6 1.2 28 41-72 38-65 (67)
No 1
>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi}
Probab=23.50 E-value=39 Score=21.95 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.8
Q ss_pred CceeEEEEEeeEEEEE
Q psy4569 58 DRYRLHTEAMGCVHLE 73 (88)
Q Consensus 58 ~R~~l~t~s~G~V~l~ 73 (88)
=|+..+||.-|.|+|+
T Consensus 64 i~~~~Kte~EG~VKv~ 79 (153)
T 1wcu_A 64 IYLQVKTETEGLVKVQ 79 (153)
T ss_dssp EEEEEEESSCEEEEEE
T ss_pred EEEEEeccccceEEEE
Confidence 4677999999999987
No 2
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=14.65 E-value=23 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.9
Q ss_pred EEEEeeEEEEEEeeeecCccccCccC
Q psy4569 63 HTEAMGCVHLELSIILRNFDKYGIEA 88 (88)
Q Consensus 63 ~t~s~G~V~l~l~v~~r~f~k~Gv~~ 88 (88)
.+..-|+|+|++.-+.|-+.++||||
T Consensus 466 ~m~P~G~vhi~~~~~~~~ar~L~Idy 491 (533)
T 2qsf_A 466 TMIPGNCCLVENPVAIKAARFLGVEF 491 (533)
T ss_dssp GGSCTTEEEEECTTHHHHHHHTTCCC
T ss_pred CCCCCCcEEecCccHHHHHHHhCCCe
Confidence 45566999999988899999999986
No 3
>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural GE protein structure initiative; 2.30A {Streptococcus pneumoniae}
Probab=12.48 E-value=1.4e+02 Score=20.98 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=30.1
Q ss_pred eeeceEe-CCCc--EEEeceeecC-HHHHHhhceecCCceecCCceeeeCCCceeEEEEEeeEEEEEEeeee
Q psy4569 11 GGGPQLK-SPDL--VYTGLDRYRG-MHDEFTRQFLGGGPQLKSPDLVYTGLDRYRLHTEAMGCVHLELSIIL 78 (88)
Q Consensus 11 ~GYg~~~-~pG~--~~~~~wRP~~-~~~~l~~~f~Gg~pel~d~~~v~~~~~R~~l~t~s~G~V~l~l~v~~ 78 (88)
-||.+-. +|.- +++-..+|.+ |. .+.-.|+| ...++ +.--|.++|+|.|||.=
T Consensus 105 hgyA~yl~dPEGn~ieiyae~d~~~l~------~v~~~~~l------~~~~~---~~gLs~fti~I~LnV~d 161 (244)
T 3e0r_A 105 NGYAFEIFSPEDDLILIHAEDDIASLV------EVGEKPEF------QTDLA---SISLSKFEISMELHLPT 161 (244)
T ss_dssp SSEEEEEECTTCCEEEEECCSCGGGCE------ECSSCCCC------CCCCS---CCCCSSEEEEEEEEECT
T ss_pred CcEEEEEECCCCCeEEEEEcCCHHHhh------cccchhhc------ccccc---ccCCCCcEEEEEEEcCc
Confidence 4664333 7744 9999999998 53 11111333 11222 33556777788888753
No 4
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=10.50 E-value=87 Score=19.79 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHHHhhceecCCceecCCceeeeCCCceeEEEEEe-----eEEEEEEeeee-cCccccCccC
Q psy4569 32 MHDEFTRQFLGGGPQLKSPDLVYTGLDRYRLHTEAM-----GCVHLELSIIL-RNFDKYGIEA 88 (88)
Q Consensus 32 ~~~~l~~~f~Gg~pel~d~~~v~~~~~R~~l~t~s~-----G~V~l~l~v~~-r~f~k~Gv~~ 88 (88)
++.++.+-+---+.+.. -.+.|.++.... ..|++++.|+- ..+..+||++
T Consensus 42 Im~EI~rvL~~~~i~~k-------~~~~y~L~C~~~~~~~~~~vkfEiEVcKvp~l~l~GI~f 97 (126)
T 1v5s_A 42 MMREIRKVLGANNCDYE-------QRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRF 97 (126)
T ss_dssp HHHHHHHHHHHTTEEEE-------EEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSCCCEE
T ss_pred HHHHHHHHHHHcCCcEE-------EECCEEEEEEECCCCCCceEEEEEEEEEecCCCceeEEE
Confidence 77777776655544443 235676776552 36889998874 4688898863
No 5
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=10.39 E-value=1.8e+02 Score=17.21 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=29.1
Q ss_pred EEEeceeecC---HHHHHhhceecCCcee----cCCceeeeCCCceeEEEEEe
Q psy4569 22 VYTGLDRYRG---MHDEFTRQFLGGGPQL----KSPDLVYTGLDRYRLHTEAM 67 (88)
Q Consensus 22 ~~~~~wRP~~---~~~~l~~~f~Gg~pel----~d~~~v~~~~~R~~l~t~s~ 67 (88)
+++.|+.|.| +.+.|.+.- ...++= .+-++-+-+.=||++.+.+.
T Consensus 10 iel~c~~~dGIe~IK~AL~~a~-~~~~~~~~~~~~vkI~~vgaP~Y~i~~~~~ 61 (93)
T 2qn6_B 10 ITVRTNEPLGVEKIKEVISKAL-ENIEQDYESLLNIKIYTIGAPRYRVDVVGT 61 (93)
T ss_dssp EEEEECCTTTHHHHHHHHHHHH-TTHHHHCTTEEEEEEEESSTTEEEEEEEES
T ss_pred EEEEeCCCchHHHHHHHHHHHH-hhcccccCccceEEEEEEcCCeEEEEEEec
Confidence 7888999999 666666431 111111 22466677889999998864
No 6
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=10.16 E-value=1.5e+02 Score=18.50 Aligned_cols=14 Identities=14% Similarity=-0.078 Sum_probs=11.6
Q ss_pred eceeecCHHHHHhh
Q psy4569 25 GLDRYRGMHDEFTR 38 (88)
Q Consensus 25 ~~wRP~~~~~~l~~ 38 (88)
.+|||..|-|+|..
T Consensus 23 k~FRPSDWAERL~G 36 (108)
T 2l9d_A 23 KPFRPSDWVDRMCS 36 (108)
T ss_dssp CBCSCTTHHHHHHH
T ss_pred CCcCCchHHHHHhh
Confidence 57999999988873
No 7
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=9.94 E-value=1.9e+02 Score=16.29 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=16.3
Q ss_pred eeeCCCceeEEEEEeeEEEE
Q psy4569 53 VYTGLDRYRLHTEAMGCVHL 72 (88)
Q Consensus 53 v~~~~~R~~l~t~s~G~V~l 72 (88)
|.-+.+.|+||....|++.|
T Consensus 42 I~H~G~~Y~LR~Tr~GKLIL 61 (63)
T 2loj_A 42 IDHNGQEYLLRKTQAGKLLL 61 (63)
T ss_dssp EEETTEEEEEEEETTTEEEE
T ss_pred EEeCCeEEEeEEccCCceee
Confidence 34457899999999999876
No 8
>1w9s_A BH0236 protein, BHCBM6; carbohydrate-binding module, lectin, beta-glucan, carbohydrate binding, glycoside hydrolase; 1.59A {Bacillus halodurans} SCOP: b.18.1.10 PDB: 1w9t_A* 1w9w_A*
Probab=7.64 E-value=2.5e+02 Score=17.14 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=8.0
Q ss_pred CCCceeEEEEE---eeEEEEEE
Q psy4569 56 GLDRYRLHTEA---MGCVHLEL 74 (88)
Q Consensus 56 ~~~R~~l~t~s---~G~V~l~l 74 (88)
+..++.+|+.| .|+|.|++
T Consensus 59 G~~~~~~rvas~~~gg~iev~~ 80 (142)
T 1w9s_A 59 DASSIEVRVASDTPGGRIEIRT 80 (142)
T ss_dssp CEEEEEEEEEESSSCEEEEEEE
T ss_pred CcEEEEEEEEcCCCCeEEEEEE
Confidence 33444444443 24444444
No 9
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=7.59 E-value=1.3e+02 Score=18.95 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=17.2
Q ss_pred CCceeEEEEEeeEEEEEEeeee
Q psy4569 57 LDRYRLHTEAMGCVHLELSIIL 78 (88)
Q Consensus 57 ~~R~~l~t~s~G~V~l~l~v~~ 78 (88)
..++++-.+..|+.+|.||..+
T Consensus 54 t~k~RlvmR~d~~~kv~lN~~i 75 (138)
T 2y8g_A 54 TLQSRLVMRTQGSLRLILNTKL 75 (138)
T ss_dssp CEEEEEEEEETTTCCEEEEEEC
T ss_pred CccEEEEEEEcCcceEEEeeEe
Confidence 3678888888888889998755
No 10
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=7.38 E-value=1.7e+02 Score=16.65 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=20.2
Q ss_pred ecCCceecCCceeeeCCCceeEEEEEeeEEEE
Q psy4569 41 LGGGPQLKSPDLVYTGLDRYRLHTEAMGCVHL 72 (88)
Q Consensus 41 ~Gg~pel~d~~~v~~~~~R~~l~t~s~G~V~l 72 (88)
+++.-|+. |.-+.+.|+||....|++.|
T Consensus 38 l~g~~ev~----I~H~G~~Y~LR~Tr~GKLIL 65 (67)
T 2jra_A 38 FTVDREIV----IAHGDDRYRLRLTSQNKLIL 65 (67)
T ss_dssp TTSSSEEE----EEETTEEEEEEECTTSCEEE
T ss_pred hCCCCEEE----EEeCCeEEEeEEccCCceee
Confidence 34554443 45567899999999999876
Done!