Query psy4569
Match_columns 88
No_of_seqs 116 out of 187
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 20:22:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4569.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4569hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqza1 d.224.1.3 (A:242-329) 22.6 19 0.0014 19.7 1.6 23 49-76 2-24 (88)
2 d1x2ga1 d.224.1.3 (A:247-337) 19.8 20 0.0015 19.8 1.3 23 50-77 3-25 (91)
3 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 13.8 18 0.0013 19.4 -0.0 23 26-48 1-23 (67)
4 d2ajta1 b.43.2.2 (A:329-498) L 13.7 30 0.0022 21.6 1.1 27 19-45 92-120 (170)
5 d2qn6b1 d.58.51.1 (B:176-264) 12.8 49 0.0036 18.1 1.8 48 20-67 6-59 (89)
6 d1sa3a_ c.52.1.23 (A:) Restric 9.8 37 0.0027 22.6 0.5 22 32-53 178-199 (262)
7 d1w0pa1 b.29.1.8 (A:25-216) Vi 8.6 59 0.0043 20.7 1.1 27 49-75 84-112 (192)
8 d2oq0a1 b.40.16.1 (A:115-202) 8.5 76 0.0056 17.6 1.5 28 2-29 36-68 (88)
9 d1mbya_ d.223.1.1 (A:) Serine/ 8.0 71 0.0052 17.2 1.2 10 66-75 14-23 (75)
10 d1u07a_ d.212.1.2 (A:) TonB {E 7.5 1.2E+02 0.0086 15.8 2.0 11 67-77 24-34 (90)
No 1
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=22.57 E-value=19 Score=19.75 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=16.1
Q ss_pred CCceeeeCCCceeEEEEEeeEEEEEEee
Q psy4569 49 SPDLVYTGLDRYRLHTEAMGCVHLELSI 76 (88)
Q Consensus 49 d~~~v~~~~~R~~l~t~s~G~V~l~l~v 76 (88)
+|++-++-..|| +.|+|.++|+|
T Consensus 2 SP~f~~~~~~rf-----~~G~vev~l~V 24 (88)
T d1vqza1 2 SPEFNVRRGIKF-----TSGKVEVFANV 24 (88)
T ss_dssp CCCCSEEEEEEE-----TTEEEEEEEEE
T ss_pred CCcceeeeeeEc-----CCcEEEEEEEE
Confidence 344545555666 37999999988
No 2
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.85 E-value=20 Score=19.76 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=15.7
Q ss_pred CceeeeCCCceeEEEEEeeEEEEEEeee
Q psy4569 50 PDLVYTGLDRYRLHTEAMGCVHLELSII 77 (88)
Q Consensus 50 ~~~v~~~~~R~~l~t~s~G~V~l~l~v~ 77 (88)
|++-++-..|| +-|+|.++|+|-
T Consensus 3 P~f~~~~~~rF-----~~G~ve~~l~V~ 25 (91)
T d1x2ga1 3 PAFSHLLDERF-----TWGGVELHFDVE 25 (91)
T ss_dssp CCCSEEEEEEE-----TTEEEEEEEEEE
T ss_pred CCCceeheeec-----CCceEEEEEEEe
Confidence 34445555565 579999999984
No 3
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.78 E-value=18 Score=19.42 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=18.5
Q ss_pred ceeecCHHHHHhhceecCCceec
Q psy4569 26 LDRYRGMHDEFTRQFLGGGPQLK 48 (88)
Q Consensus 26 ~wRP~~~~~~l~~~f~Gg~pel~ 48 (88)
+|-|.|+.+.+++.|-|.-|--.
T Consensus 1 mv~pvgF~eaW~aqFP~sepP~m 23 (67)
T d1k1fa_ 1 MVDPVGFAEAWKAQFPDSEPPRM 23 (67)
T ss_dssp CCCHHHHHHHHHHHCTTSCCCCC
T ss_pred CCChhHHHHHHHHhCCCCCCCcc
Confidence 46788888999999999877533
No 4
>d2ajta1 b.43.2.2 (A:329-498) L-arabinose isomerase AraA {Escherichia coli [TaxId: 562]}
Probab=13.71 E-value=30 Score=21.61 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCc-EEEeceeecC-HHHHHhhceecCCc
Q psy4569 19 PDL-VYTGLDRYRG-MHDEFTRQFLGGGP 45 (88)
Q Consensus 19 pG~-~~~~~wRP~~-~~~~l~~~f~Gg~p 45 (88)
|+. +....|+|+. +.+-..+|...|++
T Consensus 92 p~lpvar~~w~p~p~l~~~~~aWi~AGga 120 (170)
T d2ajta1 92 PKLPVANALWKAQPDLPTASEAWILAGGA 120 (170)
T ss_dssp TTCCSCBEEEEESSCHHHHHHHHHHTCCC
T ss_pred CCCcceeEEEeeCCCHHHHHHHHHHcCCC
Confidence 344 6667899998 99999999988775
No 5
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=12.76 E-value=49 Score=18.13 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=31.0
Q ss_pred CcEEEeceeecC---HHHHHhhceecC---CceecCCceeeeCCCceeEEEEEe
Q psy4569 20 DLVYTGLDRYRG---MHDEFTRQFLGG---GPQLKSPDLVYTGLDRYRLHTEAM 67 (88)
Q Consensus 20 G~~~~~~wRP~~---~~~~l~~~f~Gg---~pel~d~~~v~~~~~R~~l~t~s~ 67 (88)
|.+++.||.|.| +.+.|.+..--. .|+=.+-++-+-++-||++.+.+.
T Consensus 6 g~i~l~~~~~dGIe~IK~aL~~a~~~~~~~~~~d~~i~i~~igaP~Yri~v~a~ 59 (89)
T d2qn6b1 6 GLITVRTNEPLGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYRVDVVGT 59 (89)
T ss_dssp EEEEEEECCTTTHHHHHHHHHHHHTTHHHHCTTEEEEEEEESSTTEEEEEEEES
T ss_pred EEEEEEeCCCccHHHHHHHHHHHHHhcccccCCCccEEEEEecCCeEEEEEEeC
Confidence 347889999999 666666533211 122234556677889999888753
No 6
>d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella sp. [TaxId: 479]}
Probab=9.83 E-value=37 Score=22.59 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=18.3
Q ss_pred HHHHHhhceecCCceecCCcee
Q psy4569 32 MHDEFTRQFLGGGPQLKSPDLV 53 (88)
Q Consensus 32 ~~~~l~~~f~Gg~pel~d~~~v 53 (88)
..+++-+|++++.+++.+.++.
T Consensus 178 y~erli~W~vt~~~~~~~~~I~ 199 (262)
T d1sa3a_ 178 YRERFIRWCVTLRAEKSEGNIL 199 (262)
T ss_dssp GHHHHHHHHHHSCSSCCCSCTT
T ss_pred HHHHHHHHHHhcCCCCCCCccc
Confidence 5688999999999998886553
No 7
>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]}
Probab=8.55 E-value=59 Score=20.67 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCceeeeCCCcee--EEEEEeeEEEEEEe
Q psy4569 49 SPDLVYTGLDRYR--LHTEAMGCVHLELS 75 (88)
Q Consensus 49 d~~~v~~~~~R~~--l~t~s~G~V~l~l~ 75 (88)
++++.+++..||. |-.-++|.++++|+
T Consensus 84 n~~yyadG~~r~l~~l~in~sG~lvv~L~ 112 (192)
T d1w0pa1 84 ITNYYANGTQRVLPIISLDSSGNLVVEFE 112 (192)
T ss_dssp BCCEEECSSEEECEEEEECTTSCEEEEET
T ss_pred ceeeEecCceEEEEEEEEcCCCCEEEEEe
Confidence 5567788899998 66778999999993
No 8
>d2oq0a1 b.40.16.1 (A:115-202) Gamma-interferon-inducible protein Ifi-16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.46 E-value=76 Score=17.65 Aligned_cols=28 Identities=14% Similarity=-0.071 Sum_probs=20.6
Q ss_pred cccccceeeeeeceEe----CCCc-EEEeceee
Q psy4569 2 HDEFTRQFLGGGPQLK----SPDL-VYTGLDRY 29 (88)
Q Consensus 2 ~D~~gr~~~~GYg~~~----~pG~-~~~~~wRP 29 (88)
.|.-|.-.+.+||..+ .||- +..-||.-
T Consensus 36 ~D~TG~MeVvv~G~~~ni~CeeGDKLrL~cFeL 68 (88)
T d2oq0a1 36 QDDRGKMDVVGTGQCHNIPCEEGDKLQLFCFRL 68 (88)
T ss_dssp EETTEEEEEEEEGGGSSCCCCTTCEEEEEEEEE
T ss_pred ecCCCcEEEEEeccEeecccCCCCeEEEEEEEE
Confidence 4677888899999998 5666 66666653
No 9
>d1mbya_ d.223.1.1 (A:) Serine/threonine-protein kinase Sak C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.01 E-value=71 Score=17.23 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=8.4
Q ss_pred EeeEEEEEEe
Q psy4569 66 AMGCVHLELS 75 (88)
Q Consensus 66 s~G~V~l~l~ 75 (88)
|+|.|.|++|
T Consensus 14 s~G~V~VQf~ 23 (75)
T d1mbya_ 14 TSGAVWVQFN 23 (75)
T ss_dssp SEEEEEEEET
T ss_pred CCccEEEEEc
Confidence 7899999884
No 10
>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
Probab=7.47 E-value=1.2e+02 Score=15.78 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=9.0
Q ss_pred eeEEEEEEeee
Q psy4569 67 MGCVHLELSII 77 (88)
Q Consensus 67 ~G~V~l~l~v~ 77 (88)
.|+|.|+|.|-
T Consensus 24 eG~V~v~f~I~ 34 (90)
T d1u07a_ 24 EGQVKVKFDVT 34 (90)
T ss_dssp CEEEEEEEEEC
T ss_pred eEEEEEEEEEe
Confidence 69999999774
Done!