RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4569
         (88 letters)



>gnl|CDD|219316 pfam07162, B9-C2, Ciliary basal body-associated, B9 protein.  The
           B9-C2 domain is found in proteins associated with the
           ciliary basal body. B9 domains were identified as a
           specific family of C2 domains. There are three
           sub-families represented by this family, notably,
           Mks1-Xbx7, Stumpy-Tza1 and Tza2 groups of proteins.
           Mutations in human Mks1 result in the developmental
           disorder Mechler-Gruber syndrome; mutations in mouse
           Stumpy lead to perinatal hydrocephalus and severe
           polycystic kidney disease. All the three distinct types
           of B9-C2 proteins cooperatively localise to the basal
           body or centrosome of cilia.
          Length = 165

 Score = 59.9 bits (146), Expect = 6e-13
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 31  GMHDEFTRQFLGGGPQLKSPDLVYTGLDRYRLHTEAMGCVHLELSIIL 78
              ++    F GGGP+L+ P L+ +GLDR+ L TE+ G V L L++IL
Sbjct: 118 SWVEKLRSFFTGGGPELRDPKLIASGLDRFGLRTESTGTVKLRLNVIL 165


>gnl|CDD|227484 COG5155, ESP1, Separase, a protease involved in sister chromatid
            separation [Cell division and chromosome partitioning /
            Posttranslational modification, protein turnover,
            chaperones].
          Length = 1622

 Score = 26.5 bits (58), Expect = 1.9
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 30   RGMHDEFTRQFLGGGPQL-----KSPDLVYTGLDRYRLHTEAMGCVHLELSIIL 78
              +       FL   PQ         DL+Y GLD  R   +      ++L  +L
Sbjct: 1313 PILARWVIELFLKLNPQEIDSRDILEDLIYFGLDIARFWGQRNAYDEIDLDALL 1366


>gnl|CDD|131890 TIGR02843, CyoB, cytochrome o ubiquinol oxidase, subunit I.
           Cytochrome o terminal oxidase complex is the component
           of the aerobic respiratory chain which reacts with
           oxygen, reducing it to water with the concomitant
           transport of 4 protons across the membrane. Also known
           as the cytochrome bo complex, cytochrome o ubiquinol
           oxidase contains four subunits, two heme b cofactors and
           a copper atom which is believed to be the oxygen active
           site. This complex is structurally related to the
           cytochrome caa3 oxidases which utilize cytochrome c as
           the reductant and contain heme a cofactors, as well as
           the intermediate form aa3 oxidases which also react
           directly with quinones as the reductant [Energy
           metabolism, Electron transport].
          Length = 646

 Score = 25.4 bits (56), Expect = 5.3
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 25  GLDRYRGMHDEFTRQFLGGGPQL 47
            LDRY GMH  F     GG P +
Sbjct: 253 TLDRYLGMH--FFTNEAGGNPMM 273


>gnl|CDD|182727 PRK10783, mltD, membrane-bound lytic murein transglycosylase D;
           Provisional.
          Length = 456

 Score = 25.1 bits (55), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 72  LELSIILRNFDKYGIE 87
           L LS IL+N  +YG+ 
Sbjct: 238 LALSDILKNSKRYGVR 253


>gnl|CDD|183092 PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional.
          Length = 262

 Score = 24.8 bits (54), Expect = 7.4
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 10/48 (20%)

Query: 38  RQFLGGGPQLKSPDLVYTGL----------DRYRLHTEAMGCVHLELS 75
           R+    G  L++ D++ TG           DR+  H E +G V    S
Sbjct: 213 RKMASLGEPLRAGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAATFS 260


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.146    0.451 

Gapped
Lambda     K      H
   0.267   0.0776    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,778,567
Number of extensions: 402688
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 8
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)