RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4569
         (88 letters)



>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1,
           S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo
           sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
          Length = 334

 Score = 28.5 bits (63), Expect = 0.20
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 2   HDEFTRQFLGGGPQLKSPDLVYTGLDRYRGMHDEFTRQFLGGGPQLKSPDLVYTGLD-R- 59
           HD + + F+    + K+P++      R  G+  +  + FL           +  G+D   
Sbjct: 47  HDPYIQHFVRLSKERKAPEINRGYFARVHGV-SQLIKAFLRKTECHCQIVNLGAGMDTTF 105

Query: 60  YRLHTEAMGCVH 71
           +RL  E +    
Sbjct: 106 WRLKDEDLLSSK 117


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 0.88
 Identities = 11/40 (27%), Positives = 13/40 (32%)

Query: 4  EFTRQFLGGGPQLKSPDLVYTGLDRYRGMHDEFTRQFLGG 43
          E   +FLG    L  P  V            EF   +L G
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98



 Score = 25.0 bits (54), Expect = 4.6
 Identities = 4/10 (40%), Positives = 5/10 (50%)

Query: 3  DEFTRQFLGG 12
           EF   +L G
Sbjct: 89 TEFENCYLEG 98


>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
          cytomegalovirus, PP65, T cell receptor (TCR), immune
          response, public response; 2.80A {Homo sapiens}
          Length = 199

 Score = 25.3 bits (55), Expect = 2.7
 Identities = 4/38 (10%), Positives = 7/38 (18%), Gaps = 4/38 (10%)

Query: 7  RQFLGGGPQLKSPDLVYTGLDRYRGMHDEFTRQFLGGG 44
          R      P+     L    L+         +       
Sbjct: 36 RWETAKSPEA----LFVMTLNGDEKKKGRISATLNTKE 69


>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC,
           structural genomics, PSI, protein structure initiative;
           3.20A {Clostridium acetobutylicum}
          Length = 461

 Score = 24.2 bits (53), Expect = 7.9
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 7/58 (12%)

Query: 29  YRGMHDEFTRQFLGGGPQLKSPDLVYTGLDRYRLHTEAMGCVHLELSIILRNFDKYGI 86
           Y  + ++    +LG G         YTG  R    +         ++ + R   K  +
Sbjct: 347 YPNVMEKRNSAYLGKGIVFN----KYTGS-RG--KSGCNDANPEYIAELRRILSKESV 397


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.146    0.451 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,447,396
Number of extensions: 76863
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 5
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)