RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4569
         (88 letters)



>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase)
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 113

 Score = 23.5 bits (51), Expect = 3.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 60 YRLHTEAMGCVHLELSIILRNFDKYGIEA 88
          Y L +        E+  I+R+FD+   EA
Sbjct: 54 YHLASMKGTVDRAEMHYIIRDFDRKQFEA 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.146    0.451 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 349,353
Number of extensions: 14460
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 4
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)