Query psy4570
Match_columns 95
No_of_seqs 103 out of 244
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 20:25:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 99.4 2.4E-13 8.1E-18 110.6 7.4 93 1-93 395-487 (584)
2 4bby_A Alkyldihydroxyacetoneph 99.3 3.3E-12 1.1E-16 104.7 7.6 91 2-92 467-557 (658)
3 1f0x_A DLDH, D-lactate dehydro 97.5 1.3E-05 4.6E-10 65.1 0.4 81 2-86 393-480 (571)
4 1e8g_A Vanillyl-alcohol oxidas 97.5 0.00014 4.7E-09 58.5 5.6 81 2-83 354-447 (560)
5 3pm9_A Putative oxidoreductase 97.0 0.00098 3.3E-08 52.8 5.8 81 1-86 291-377 (476)
6 2exr_A Cytokinin dehydrogenase 95.8 0.00078 2.7E-08 53.8 -1.6 67 6-81 324-401 (524)
7 1wvf_A 4-cresol dehydrogenase 94.2 0.1 3.4E-06 41.3 6.3 78 2-83 323-416 (520)
8 2fvt_A Conserved hypothetical 71.8 1.3 4.3E-05 29.6 1.0 28 39-66 76-103 (135)
9 2gm2_A Conserved hypothetical 67.7 1.7 5.8E-05 28.8 1.0 28 39-66 73-100 (132)
10 2fi9_A Outer membrane protein; 65.6 2.1 7.1E-05 28.1 1.1 27 40-66 78-104 (128)
11 2ab1_A Hypothetical protein; H 65.0 1.8 6E-05 28.4 0.6 28 39-66 70-98 (122)
12 1hsk_A UDP-N-acetylenolpyruvoy 64.2 5.8 0.0002 29.5 3.4 35 1-35 274-309 (326)
13 1l7b_A DNA ligase; BRCT, autos 62.1 4.8 0.00016 24.9 2.2 36 1-39 11-58 (92)
14 3cpk_A Uncharacterized protein 56.8 3.6 0.00012 28.1 1.0 29 39-67 97-125 (150)
15 3l3e_A DNA topoisomerase 2-bin 41.5 25 0.00086 21.4 3.1 28 1-31 19-46 (107)
16 2ozl_A PDHE1-A type I, pyruvat 39.8 85 0.0029 23.6 6.5 75 5-87 229-325 (365)
17 1zzk_A Heterogeneous nuclear r 37.3 34 0.0012 20.0 3.2 26 3-28 54-79 (82)
18 3l46_A Protein ECT2; alternati 36.1 39 0.0013 21.4 3.5 29 1-32 25-53 (112)
19 2l42_A DNA-binding protein RAP 35.6 16 0.00054 23.7 1.5 34 15-48 31-64 (106)
20 1cxq_A Avian sarcoma virus int 33.6 62 0.0021 20.3 4.2 71 15-90 54-127 (162)
21 1qs0_A 2-oxoisovalerate dehydr 33.0 1.6E+02 0.0056 22.4 7.3 75 4-87 272-368 (407)
22 1w1o_A Cytokinin dehydrogenase 31.9 7.5 0.00026 30.6 -0.7 73 10-85 344-420 (534)
23 2wdq_C Succinate dehydrogenase 30.6 11 0.00037 24.4 0.1 24 49-72 89-112 (129)
24 3r3t_A 30S ribosomal protein S 30.4 45 0.0015 20.5 3.0 54 8-66 18-71 (99)
25 1ydo_A HMG-COA lyase; TIM-barr 30.3 61 0.0021 23.8 4.1 66 11-82 119-198 (307)
26 3vej_A Ubiquitin-like protein 29.7 13 0.00045 20.2 0.3 14 66-79 5-18 (41)
27 3r8j_A Heme-binding protein 2; 29.5 58 0.002 22.9 3.8 43 2-48 142-186 (212)
28 1mkz_A Molybdenum cofactor bio 29.5 83 0.0028 20.9 4.4 49 31-84 18-66 (172)
29 1use_A VAsp, vasodilator-stimu 28.9 54 0.0018 18.1 2.7 22 72-93 24-45 (45)
30 2cw6_A Hydroxymethylglutaryl-C 28.4 1.1E+02 0.0036 22.0 5.1 64 14-83 121-198 (298)
31 2nvj_A 25MER peptide from vacu 28.2 17 0.00059 17.9 0.6 11 46-58 11-21 (26)
32 2d8m_A DNA-repair protein XRCC 28.1 38 0.0013 21.5 2.4 28 1-31 26-53 (129)
33 4b0y_A Heme-binding protein 2; 27.4 74 0.0025 22.6 4.0 43 2-48 161-205 (227)
34 2jtw_A Transmembrane helix 7 o 27.3 16 0.00053 18.0 0.3 10 46-57 6-15 (26)
35 3av9_A Integrase, IN; protein- 25.9 1.3E+02 0.0046 19.2 5.8 65 16-85 69-135 (183)
36 3zzp_A TS9, ribosomal protein 25.4 63 0.0022 19.2 2.9 21 8-28 57-77 (77)
37 1g3k_A ATP-dependent protease 24.8 50 0.0017 21.7 2.6 45 2-46 43-89 (174)
38 2cok_A Poly [ADP-ribose] polym 24.8 41 0.0014 21.4 2.1 28 1-31 14-41 (113)
39 2ebu_A Replication factor C su 24.6 49 0.0017 21.1 2.4 27 1-29 26-52 (112)
40 2kjw_A TS9, 30S ribosomal prot 24.2 65 0.0022 20.0 2.9 34 8-44 57-90 (96)
41 1m4y_A ATP-dependent protease 23.8 54 0.0019 21.4 2.6 46 2-47 43-90 (171)
42 3sui_B Transient receptor pote 22.7 21 0.00072 18.7 0.3 20 32-52 16-35 (37)
43 2vxb_A DNA repair protein RHP9 22.4 33 0.0011 24.2 1.4 33 1-33 6-38 (241)
44 2x78_A Integrase; viral protei 22.1 1.4E+02 0.0047 19.2 4.4 45 44-88 81-127 (200)
45 2pbq_A Molybdenum cofactor bio 21.7 1.1E+02 0.0037 20.4 3.9 37 45-84 26-65 (178)
46 2cou_A ECT2 protein; BRCT doma 21.7 1.1E+02 0.0037 18.7 3.6 29 1-32 16-44 (109)
47 3olc_X DNA topoisomerase 2-bin 21.2 1E+02 0.0034 22.4 3.8 29 1-32 203-231 (298)
48 4hhu_A OR280; engineered prote 21.2 98 0.0034 20.8 3.4 30 1-30 4-34 (170)
49 2z3b_A ATP-dependent protease 21.1 59 0.002 21.6 2.4 47 2-48 49-97 (180)
50 2k6g_A Replication factor C su 21.1 53 0.0018 20.7 2.0 27 1-29 36-62 (109)
51 1j5k_A Heterogeneous nuclear r 20.9 1E+02 0.0035 18.1 3.3 26 3-28 61-86 (89)
52 3kks_A Integrase, IN; beta-str 20.9 1.5E+02 0.005 17.8 5.9 67 16-87 42-110 (152)
53 1di6_A MOGA, molybdenum cofact 20.8 1.2E+02 0.0042 20.7 4.1 38 45-83 24-62 (195)
54 2kxh_B Peptide of FAR upstream 20.8 97 0.0033 15.7 2.9 20 12-31 10-29 (31)
55 1y5e_A Molybdenum cofactor bio 20.6 1.2E+02 0.0041 19.9 3.9 49 30-83 20-68 (169)
56 3iwt_A 178AA long hypothetical 20.6 1.2E+02 0.0041 19.8 3.9 35 45-81 41-75 (178)
57 1ex4_A Integrase; SH3-like dom 20.4 2E+02 0.0069 19.2 6.0 64 17-85 50-115 (239)
58 1of1_A Thymidine kinase; trans 20.2 40 0.0014 25.9 1.5 52 2-55 51-103 (376)
59 3l3u_A POL polyprotein; DNA in 20.2 1.6E+02 0.0056 18.1 5.7 66 16-86 49-116 (163)
60 1e2k_A Thymidine kinase; trans 20.1 33 0.0011 25.7 1.0 52 2-55 6-58 (331)
61 2lnz_A Ubiquitin-like protein 20.0 24 0.00083 20.8 0.2 15 64-78 26-40 (64)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.42 E-value=2.4e-13 Score=110.58 Aligned_cols=93 Identities=20% Similarity=0.292 Sum_probs=87.0
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHHHHHHHH
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l~~~V~ 80 (95)
+++.|+|++++|+.+.+++.++++++||...+++..+.|+..|+..||+|+.++++|.+.+++||+|||++++++++.++
T Consensus 395 llve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~ 474 (584)
T 2uuu_A 395 SIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAK 474 (584)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHH
Confidence 36789999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q psy4570 81 KRLTRECTGRWLP 93 (95)
Q Consensus 81 ~a~~~a~~~~g~~ 93 (95)
+.+.+.+.++|.+
T Consensus 475 ~~l~~~~~~~g~~ 487 (584)
T 2uuu_A 475 QTFVKHFKDQGIP 487 (584)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHhHHHhcCCe
Confidence 9999999888765
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.31 E-value=3.3e-12 Score=104.67 Aligned_cols=91 Identities=55% Similarity=1.070 Sum_probs=87.3
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHHHHHHHHH
Q psy4570 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (95)
Q Consensus 2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l~~~V~~ 81 (95)
++.|||+.+.+..+.+.+.++++++||+..++..+++|+..||..||+|+..++.+...+++||+++|++++++++.+++
T Consensus 467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~ 546 (658)
T 4bby_A 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE 546 (658)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q psy4570 82 RLTRECTGRWL 92 (95)
Q Consensus 82 a~~~a~~~~g~ 92 (95)
.+.+.+.+.++
T Consensus 547 ~l~~~~~~~g~ 557 (658)
T 4bby_A 547 RIRRECKEKGV 557 (658)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhcCc
Confidence 99999888765
No 3
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=97.55 E-value=1.3e-05 Score=65.11 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=60.0
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCccC--CCccchhhhhccchhh----hhhHHHHh-cccceeeeeccccccCcHH
Q psy4570 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVL 74 (95)
Q Consensus 2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~--G~~~G~~W~~~rF~~P----YLRd~l~~-~g~~~dT~ETA~~Ws~~~~ 74 (95)
++-|+|+..+. ..+++.++++.++|... .++.+++|+..||..| ++|+...+ .| .+.+++||+||++++.
T Consensus 393 lve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~ 469 (571)
T 1f0x_A 393 LLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEW 469 (571)
T ss_dssp EEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCC
T ss_pred EEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHH
Confidence 45666765432 35666778888866444 4567788888999997 88988775 33 3689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy4570 75 LCINVKKRLTRE 86 (95)
Q Consensus 75 l~~~V~~a~~~a 86 (95)
+ +.+++.+.+.
T Consensus 470 ~-~~~~~~l~~~ 480 (571)
T 1f0x_A 470 Y-EHLPPEIDSQ 480 (571)
T ss_dssp S-CCCCHHHHTT
T ss_pred H-HHHHHHHHhh
Confidence 9 8887776543
No 4
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=97.49 E-value=0.00014 Score=58.48 Aligned_cols=81 Identities=10% Similarity=-0.094 Sum_probs=59.6
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCccC--CCcc--chhhhhccchh----hhhhHH---HHhcccceeeeeccccc-
Q psy4570 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW- 69 (95)
Q Consensus 2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~--G~~~--G~~W~~~rF~~----PYLRd~---l~~~g~~~dT~ETA~~W- 69 (95)
++.|+|+++.|+.+.+++.++|+++||..+ ...+ .+.|+. |+.. |+++.. .|..|=...++++++||
T Consensus 354 ~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~ 432 (560)
T 1e8g_A 354 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVS 432 (560)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSS
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCC
Confidence 466999999999999999999999998533 3333 345665 7765 887754 23332234668999999
Q ss_pred -cCcHHHHHHHHHHH
Q psy4570 70 -DKTVLLCINVKKRL 83 (95)
Q Consensus 70 -s~~~~l~~~V~~a~ 83 (95)
++++++++.+++.+
T Consensus 433 ~~~l~~~~~~~~~~~ 447 (560)
T 1e8g_A 433 GEDAMMQYAVTKKRC 447 (560)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 99999999996644
No 5
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=97.03 E-value=0.00098 Score=52.79 Aligned_cols=81 Identities=10% Similarity=-0.050 Sum_probs=57.2
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCcc---CCC---ccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHH
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIP---AGE---SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~---~G~---~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~ 74 (95)
+++-|+|+.++++.+.+++.+++.++|++. +-. +..+-| +.|-..+ ..+...|. ..+.+++||||++++
T Consensus 291 llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW-~~R~~~~---~~~~~~g~-~~~~Dv~vP~~~l~~ 365 (476)
T 3pm9_A 291 VLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFW-KLREEIS---PAQKPEGG-SIKHDISVPVAAVPQ 365 (476)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHH-HHHHTHH---HHTGGGCC-EECCEEECCGGGHHH
T ss_pred EEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHH-HHHHHHH---HHHhhcCC-ceeEEEEeeHHHHHH
Confidence 367899988888888899999999998742 111 122344 4444333 12223454 688999999999999
Q ss_pred HHHHHHHHHHHH
Q psy4570 75 LCINVKKRLTRE 86 (95)
Q Consensus 75 l~~~V~~a~~~a 86 (95)
+++.+++.+.+.
T Consensus 366 ~~~~~~~~~~~~ 377 (476)
T 3pm9_A 366 FIEQANAAVVAL 377 (476)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998887765
No 6
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=95.83 E-value=0.00078 Score=53.75 Aligned_cols=67 Identities=6% Similarity=-0.151 Sum_probs=49.9
Q ss_pred ec-ChHHHHhHHHHHHHHHHHcCCccCCCcc----------chhhhhccchhhhhhHHHHhcccceeeeeccccccCcHH
Q psy4570 6 LG-DPEDVKNNEDKIYSIAKRYGGIPAGESN----------GRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74 (95)
Q Consensus 6 EG-~~~~v~~~~~~~~~i~~~~GG~~~G~~~----------G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~ 74 (95)
+| ++++++.+.+++.++++.+||....... ...|...++..|.++. . +++++||||++++
T Consensus 324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~ 394 (524)
T 2exr_A 324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD 394 (524)
T ss_dssp TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence 78 7788999999999999999997655322 2336666655554442 1 3699999999999
Q ss_pred HHHHHHH
Q psy4570 75 LCINVKK 81 (95)
Q Consensus 75 l~~~V~~ 81 (95)
+++.|++
T Consensus 395 ~~~~v~~ 401 (524)
T 2exr_A 395 FNRTVFK 401 (524)
T ss_dssp HHHHCCC
T ss_pred HHHHHHH
Confidence 9988754
No 7
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=94.21 E-value=0.1 Score=41.26 Aligned_cols=78 Identities=12% Similarity=-0.117 Sum_probs=47.5
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHh----------------cccceeeeec
Q psy4570 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD----------------YYFIGDSFET 65 (95)
Q Consensus 2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~----------------~g~~~dT~ET 65 (95)
++.|+|++++++.+.+.+.++++++|+..+-. ..+. .+-...++|+.++. -+.+.++.-.
T Consensus 323 ~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~~---~~~~-~~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 398 (520)
T 1wvf_A 323 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIVT---QEEA-GDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVS 398 (520)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHHHTCCEEEE---HHHH-TTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHcCCeEEEe---cccc-hhhhHHHHHHHhhccCchhhhhccccccCCCceEEecccc
Confidence 45599999999999999999999999864321 1222 12334455554431 1122222333
Q ss_pred cccccCcHHHHHHHHHHH
Q psy4570 66 SVPWDKTVLLCINVKKRL 83 (95)
Q Consensus 66 A~~Ws~~~~l~~~V~~a~ 83 (95)
.++|++++++++.+++.+
T Consensus 399 p~~~~~l~~~~~~~~~~~ 416 (520)
T 1wvf_A 399 EARGSECKKQAAMAKRVL 416 (520)
T ss_dssp ESCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 445588888887775544
No 8
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=71.83 E-value=1.3 Score=29.64 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=25.1
Q ss_pred hhhccchhhhhhHHHHhcccceeeeecc
Q psy4570 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (95)
Q Consensus 39 W~~~rF~~PYLRd~l~~~g~~~dT~ETA 66 (95)
+...+|-.|-+|+.|.++|+-+|.+-|.
T Consensus 76 G~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 76 GADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 5567788899999999999999999996
No 9
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=67.69 E-value=1.7 Score=28.82 Aligned_cols=28 Identities=4% Similarity=-0.121 Sum_probs=24.9
Q ss_pred hhhccchhhhhhHHHHhcccceeeeecc
Q psy4570 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (95)
Q Consensus 39 W~~~rF~~PYLRd~l~~~g~~~dT~ETA 66 (95)
+...+|-.|-+|+.|.++|+-+|.+-|.
T Consensus 73 G~~~~~l~p~~~~~l~~~GI~vE~m~T~ 100 (132)
T 2gm2_A 73 GERQQFPSTDVLAACLTRGIGLEAMTNA 100 (132)
T ss_dssp TTSCCCCCHHHHHHHHHHTCEEEEECHH
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 5566788899999999999999999994
No 10
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=65.59 E-value=2.1 Score=28.12 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=24.1
Q ss_pred hhccchhhhhhHHHHhcccceeeeecc
Q psy4570 40 YMLTYIIAYIRDFACDYYFIGDSFETS 66 (95)
Q Consensus 40 ~~~rF~~PYLRd~l~~~g~~~dT~ETA 66 (95)
...+|-.|-+|+.|.++|+-+|.+-|.
T Consensus 78 ~~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 78 VELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp TSCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 347888899999999999999999984
No 11
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=65.02 E-value=1.8 Score=28.38 Aligned_cols=28 Identities=7% Similarity=-0.033 Sum_probs=24.9
Q ss_pred hhhccc-hhhhhhHHHHhcccceeeeecc
Q psy4570 39 GYMLTY-IIAYIRDFACDYYFIGDSFETS 66 (95)
Q Consensus 39 W~~~rF-~~PYLRd~l~~~g~~~dT~ETA 66 (95)
+...+| -.|-+|+.|.++|+-+|.+-|.
T Consensus 70 G~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 70 GMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp CSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 567788 7889999999999999999885
No 12
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=64.19 E-value=5.8 Score=29.49 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=29.7
Q ss_pred CEEEEec-ChHHHHhHHHHHHHHHHHcCCccCCCcc
Q psy4570 1 MALLVLG-DPEDVKNNEDKIYSIAKRYGGIPAGESN 35 (95)
Q Consensus 1 ~~~gfEG-~~~~v~~~~~~~~~i~~~~GG~~~G~~~ 35 (95)
+++-++| +.+++....+.+.+++++++|+.+..++
T Consensus 274 ~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev 309 (326)
T 1hsk_A 274 FMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 309 (326)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCS
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEE
Confidence 3567788 6688999999999999999999888764
No 13
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=62.06 E-value=4.8 Score=24.91 Aligned_cols=36 Identities=17% Similarity=0.451 Sum_probs=26.5
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCc------------cCCCccchhh
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI------------PAGESNGRRG 39 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~------------~~G~~~G~~W 39 (95)
+++.|+|.-+. .+..+.+++.++||. +.|+.+|.+.
T Consensus 11 ~~~v~TG~l~~---~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~ 58 (92)
T 1l7b_A 11 LTFVITGELSR---PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKL 58 (92)
T ss_dssp CEEECSTTTTS---CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTH
T ss_pred cEEEEecCCCC---CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHH
Confidence 46888997544 678888999999993 4477677554
No 14
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=56.78 E-value=3.6 Score=28.15 Aligned_cols=29 Identities=7% Similarity=-0.168 Sum_probs=25.3
Q ss_pred hhhccchhhhhhHHHHhcccceeeeeccc
Q psy4570 39 GYMLTYIIAYIRDFACDYYFIGDSFETSV 67 (95)
Q Consensus 39 W~~~rF~~PYLRd~l~~~g~~~dT~ETA~ 67 (95)
+...+|-.|-++..|.++|+.+|.+-|..
T Consensus 97 G~~~~~l~p~~~~~L~~~GIgvE~M~T~a 125 (150)
T 3cpk_A 97 GRRQHLLGPEQVRPLLAMGVGVEAMDTQA 125 (150)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHH
T ss_pred CCCCCCCCHHHHHHHHHcCCEEEEeCHHH
Confidence 55667889999999999999999999853
No 15
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=41.49 E-value=25 Score=21.39 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=21.0
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccC
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA 31 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~ 31 (95)
+++.|.|... ..+..+.++++++||.+.
T Consensus 19 ~~i~isg~~~---~~r~~l~~li~~~Gg~v~ 46 (107)
T 3l3e_A 19 VVVCVSKKLS---KKQSELNGIAASLGADYR 46 (107)
T ss_dssp CEEEECGGGG---GGHHHHHHHHHHTTCEEE
T ss_pred eEEEEeCCCh---HhHHHHHHHHHHcCCEEe
Confidence 4677777654 567888899999999543
No 16
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=39.83 E-value=85 Score=23.63 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=46.5
Q ss_pred EecC-hHHHHhHHHHHHHHHHHcCCccC---------C---Cccc---------hhhhhccchhhhhhHHHHhcccceee
Q psy4570 5 VLGD-PEDVKNNEDKIYSIAKRYGGIPA---------G---ESNG---------RRGYMLTYIIAYIRDFACDYYFIGDS 62 (95)
Q Consensus 5 fEG~-~~~v~~~~~~~~~i~~~~GG~~~---------G---~~~G---------~~W~~~rF~~PYLRd~l~~~g~~~dT 62 (95)
++|. ...|....+.+.+.+++.+|-.+ | .++. +.|...+=-++-+|+.|.+.|++-+
T Consensus 229 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~- 307 (365)
T 2ozl_A 229 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASV- 307 (365)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCH-
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCH-
Confidence 4663 46677778888887877777322 1 1221 3455443334478899999999876
Q ss_pred eeccccccCcHHHHHHHHHHHHHHH
Q psy4570 63 FETSVPWDKTVLLCINVKKRLTREC 87 (95)
Q Consensus 63 ~ETA~~Ws~~~~l~~~V~~a~~~a~ 87 (95)
+.+.++.+.+++.+.++.
T Consensus 308 -------~~~~~i~~~~~~~v~~a~ 325 (365)
T 2ozl_A 308 -------EELKEIDVEVRKEIEDAA 325 (365)
T ss_dssp -------HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 344555566665555554
No 17
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=37.27 E-value=34 Score=19.97 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=22.0
Q ss_pred EEEecChHHHHhHHHHHHHHHHHcCC
Q psy4570 3 LLVLGDPEDVKNNEDKIYSIAKRYGG 28 (95)
Q Consensus 3 ~gfEG~~~~v~~~~~~~~~i~~~~GG 28 (95)
+-..|+++.|+..+..+.++++..+|
T Consensus 54 v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 54 ITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 45678899999999999999988765
No 18
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=36.12 E-value=39 Score=21.42 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=21.5
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccCC
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG 32 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G 32 (95)
+++.|.|-.. ..++.+.+++..+||.+.+
T Consensus 25 ~~Ic~sGf~~---~er~~l~~~i~~~GG~~~~ 53 (112)
T 3l46_A 25 CILSFLGFSD---EEKTNMEEMTEMQGGKYLP 53 (112)
T ss_dssp CEECEESCCH---HHHHHHHHHHHHTTCEECC
T ss_pred eEEEEeCCCH---HHHHHHHHHHHHcCCEECc
Confidence 3566777554 3577888899999997775
No 19
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=35.62 E-value=16 Score=23.72 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCccCCCccchhhhhccchhhh
Q psy4570 15 NEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 48 (95)
Q Consensus 15 ~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PY 48 (95)
-..+..++.+++||.++-+-|-++-....+..||
T Consensus 31 d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpy 64 (106)
T 2l42_A 31 DIDQLARLIRANGGEVLDSKPRESKENVFIVSPY 64 (106)
T ss_dssp THHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTT
T ss_pred HHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCC
Confidence 3566777889999998877665444444444444
No 20
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=33.58 E-value=62 Score=20.28 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCc-cCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccC--cHHHHHHHHHHHHHHHhhC
Q psy4570 15 NEDKIYSIAKRYGGI-PAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTRECTGR 90 (95)
Q Consensus 15 ~~~~~~~i~~~~GG~-~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~--~~~l~~~V~~a~~~a~~~~ 90 (95)
..+....+++.+|-- .+=.++|.. |....+++++..+|+-...--.-.+|+| +++....+++.+..-+...
T Consensus 54 v~~~l~~~~~~~g~p~~i~sDnG~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~tlk~~~~~~~~~~ 127 (162)
T 1cxq_A 54 AQHHWATAIAVLGRPKAIKTDNGSC-----FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGD 127 (162)
T ss_dssp HHHHHHHHHHHHCCCSEEECCSCHH-----HHSHHHHHHHHHHTCEEECCCCC----CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCeEEEeCCchh-----hhhHHHHHHHHHCCCeEeeCCCCCCccCCEEehHHHHHHHHHHHHcCcc
Confidence 344455666777631 222344433 3445568899999998877777788988 7888888887777665544
No 21
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=33.00 E-value=1.6e+02 Score=22.44 Aligned_cols=75 Identities=11% Similarity=-0.033 Sum_probs=45.1
Q ss_pred EEecCh-HHHHhHHHHHHHHHHHcCCccC-------------CCccc--------hhhhhccchhhhhhHHHHhccccee
Q psy4570 4 LVLGDP-EDVKNNEDKIYSIAKRYGGIPA-------------GESNG--------RRGYMLTYIIAYIRDFACDYYFIGD 61 (95)
Q Consensus 4 gfEG~~-~~v~~~~~~~~~i~~~~GG~~~-------------G~~~G--------~~W~~~rF~~PYLRd~l~~~g~~~d 61 (95)
-++|.+ ..|....+.+.+.+++.+|-.+ +..+. +.|.. +=-+..+|+.|.+.|++-+
T Consensus 272 ~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~-~DPi~~~~~~L~~~g~~~~ 350 (407)
T 1qs0_A 272 RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSE 350 (407)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTT-CCHHHHHHHHHHHTTSCCH
T ss_pred EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHCCCCCH
Confidence 345644 5677778888887777777222 11121 25654 3223388999999999877
Q ss_pred eeeccccccCcHHHHHHHHHHHHHHH
Q psy4570 62 SFETSVPWDKTVLLCINVKKRLTREC 87 (95)
Q Consensus 62 T~ETA~~Ws~~~~l~~~V~~a~~~a~ 87 (95)
. .+.++.+.+++.+.+++
T Consensus 351 ~--------~~~~i~~~~~~~v~~a~ 368 (407)
T 1qs0_A 351 E--------EHQATTAEFEAAVIAAQ 368 (407)
T ss_dssp H--------HHHHHHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHHHHHH
Confidence 3 34455555555555543
No 22
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=31.91 E-value=7.5 Score=30.57 Aligned_cols=73 Identities=8% Similarity=-0.075 Sum_probs=38.1
Q ss_pred HHHHhHHHHHHHHHHHcCCccCCCcc-chhhhhccchhhh--hhHH-HHhcccceeeeeccccccCcHHHHHHHHHHHHH
Q psy4570 10 EDVKNNEDKIYSIAKRYGGIPAGESN-GRRGYMLTYIIAY--IRDF-ACDYYFIGDSFETSVPWDKTVLLCINVKKRLTR 85 (95)
Q Consensus 10 ~~v~~~~~~~~~i~~~~GG~~~G~~~-G~~W~~~rF~~PY--LRd~-l~~~g~~~dT~ETA~~Ws~~~~l~~~V~~a~~~ 85 (95)
++++...+.+.++++.+|+....... -..|. .++..++ +|+. ++..+- -...+++|||+++++.+.+.+++.+
T Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~-~~~~~~~w~~r~~~~~~~~~--~~~d~~vP~s~l~~~~~~~~~~l~~ 420 (534)
T 1w1o_A 344 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFL-DRVHGEEVALNKLGLWRVPH--PWLNMFVPRSRIADFDRGVFKGILQ 420 (534)
T ss_dssp CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHH-THHHHHHHHHHHTTCSSSCC--CCEEEEEEGGGHHHHHHHHTTTTTT
T ss_pred hhhHHHHHHHHHhhcccCCcceeccchHHHHh-hhhhhhHHHHhhccccccCC--ccccEEecHHHHHhHHHHHHHHHhh
Confidence 56777778888888777773222111 11111 1111111 1211 111111 0228889999999999888654443
No 23
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=30.64 E-value=11 Score=24.38 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=18.9
Q ss_pred hhHHHHhcccceeeeeccccccCc
Q psy4570 49 IRDFACDYYFIGDSFETSVPWDKT 72 (95)
Q Consensus 49 LRd~l~~~g~~~dT~ETA~~Ws~~ 72 (95)
+|+.+||+|+..||.++.-.+..+
T Consensus 89 iRhl~~D~G~g~~~~~~~~~~~~~ 112 (129)
T 2wdq_C 89 IRHMMMDFGYLEETFEAGKRSAKI 112 (129)
T ss_dssp HHHHHHHTTSSCCSHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHH
Confidence 799999999998887776554443
No 24
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=30.43 E-value=45 Score=20.48 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=36.6
Q ss_pred ChHHHHhHHHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHhcccceeeeecc
Q psy4570 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 66 (95)
Q Consensus 8 ~~~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA 66 (95)
++++++...++...++.+.||.....+ .|=..++ ||-=+-..+-.|+.=+|++.
T Consensus 18 ~~e~~~~~~~~~~~~i~~~gg~i~~~e---~wG~R~L--AY~I~k~~~G~Y~l~~f~a~ 71 (99)
T 3r3t_A 18 EEEAQKALVERFAGVLTNNGAEIINTK---EWGKRRL--AYEINDLREGFYMILNVNAN 71 (99)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCCCCC---CCCSCCC--CCCCCCCCCSCCCCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEE---Eeecccc--CcCcCCCCEEEEEEEEEEeC
Confidence 357788899999999999999877553 5655555 44333344566666666653
No 25
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=30.31 E-value=61 Score=23.75 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHhHHHHHHHHHHHcCCcc-------CCCccchhhhhccchhhhhhHHH---Hhccc----ceeeeeccccccCcHHHH
Q psy4570 11 DVKNNEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDFA---CDYYF----IGDSFETSVPWDKTVLLC 76 (95)
Q Consensus 11 ~v~~~~~~~~~i~~~~GG~~-------~G~~~G~~W~~~rF~~PYLRd~l---~~~g~----~~dT~ETA~~Ws~~~~l~ 76 (95)
++-...+.+.+.++++|-.. .|.+ +.+|.+..|+-+.+ .++|. ++||.-.++| ..+.++.
T Consensus 119 e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~v~~lv 192 (307)
T 1ydo_A 119 ESLHILKQVNNDAQKANLTTRAYLSTVFGCP-----YEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANP-AQVETVL 192 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECTTCBT-----TTBCCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEecCC-----cCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCH-HHHHHHH
Confidence 34445567778888888744 2221 34566666766655 56665 7899999988 5566666
Q ss_pred HHHHHH
Q psy4570 77 INVKKR 82 (95)
Q Consensus 77 ~~V~~a 82 (95)
+.+++.
T Consensus 193 ~~l~~~ 198 (307)
T 1ydo_A 193 EALLAR 198 (307)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 666543
No 26
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=29.71 E-value=13 Score=20.20 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=12.1
Q ss_pred cccccCcHHHHHHH
Q psy4570 66 SVPWDKTVLLCINV 79 (95)
Q Consensus 66 A~~Ws~~~~l~~~V 79 (95)
.|||+.+..|.++.
T Consensus 5 ~VPWd~Ie~lL~~~ 18 (41)
T 3vej_A 5 TVPWDDIEALLKNN 18 (41)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH
Confidence 59999999998774
No 27
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=29.52 E-value=58 Score=22.86 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=30.7
Q ss_pred EEEEecCh--HHHHhHHHHHHHHHHHcCCccCCCccchhhhhccchhhh
Q psy4570 2 ALLVLGDP--EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 48 (95)
Q Consensus 2 ~~gfEG~~--~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PY 48 (95)
+..|.|.. +.+..+.++..+.|+++|-.+.|. -.+-.+|+.|+
T Consensus 142 v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~----~y~~A~Yd~P~ 186 (212)
T 3r8j_A 142 VRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK----VYYTAGYNSPV 186 (212)
T ss_dssp EEEESSCCCHHHHHHHHHHHHHHHHHTTCCBCSS----CEEEEESSSSS
T ss_pred EEEeCCcCCHHHHHHHHHHHHHHHHhCCCccCCC----cEEEEEeCCCC
Confidence 56788844 558888899999999999666544 34556666664
No 28
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=29.49 E-value=83 Score=20.89 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=32.2
Q ss_pred CCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHHHHHHHHHHHH
Q psy4570 31 AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 84 (95)
Q Consensus 31 ~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l~~~V~~a~~ 84 (95)
.|.+.|+.-.. +.|+|...|.++|+-+... +.++ |+...+.+++++++.
T Consensus 18 tGdE~g~i~D~---n~~~l~~~L~~~G~~v~~~-~iv~-Dd~~~i~~~l~~a~~ 66 (172)
T 1mkz_A 18 VSNRRGEEDDT---SGHYLRDSAQEAGHHVVDK-AIVK-ENRYAIRAQVSAWIA 66 (172)
T ss_dssp ECSSCCGGGCH---HHHHHHHHHHHTTCEEEEE-EEEC-SCHHHHHHHHHHHHH
T ss_pred EeCCCCcccCc---cHHHHHHHHHHCCCeEeEE-EEeC-CCHHHHHHHHHHHHh
Confidence 46665543322 5799999999999855443 3344 788777777766554
No 29
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=28.85 E-value=54 Score=18.06 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHHHHhhCCCC
Q psy4570 72 TVLLCINVKKRLTRECTGRWLP 93 (95)
Q Consensus 72 ~~~l~~~V~~a~~~a~~~~g~~ 93 (95)
+..+-+.|.+|+++.+.+.|.+
T Consensus 24 lqK~K~EIIeAi~~El~~~~~~ 45 (45)
T 1use_A 24 LQKVKEEIIEAFVQELRKRGSP 45 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 3445566777777777777654
No 30
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=28.43 E-value=1.1e+02 Score=22.04 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHcCCcc-------CCCccchhhhhccchhhhhhHHH---Hhccc----ceeeeeccccccCcHHHHHHH
Q psy4570 14 NNEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDFA---CDYYF----IGDSFETSVPWDKTVLLCINV 79 (95)
Q Consensus 14 ~~~~~~~~i~~~~GG~~-------~G~~~G~~W~~~rF~~PYLRd~l---~~~g~----~~dT~ETA~~Ws~~~~l~~~V 79 (95)
....++.+.++++|-.. .|.+ +.+|.+..|+-+.+ .++|. ++||...+.| ..+.++.+.+
T Consensus 121 ~~~~~~i~~a~~~G~~v~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~~~~lv~~l 194 (298)
T 2cw6_A 121 QRFDAILKAAQSANISVRGYVSCALGCP-----YEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTP-GIMKDMLSAV 194 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTTCBT-----TTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEEeeCC-----cCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCH-HHHHHHHHHH
Confidence 34556677888888743 2221 34555555666554 56665 7899999888 5666666666
Q ss_pred HHHH
Q psy4570 80 KKRL 83 (95)
Q Consensus 80 ~~a~ 83 (95)
++.+
T Consensus 195 ~~~~ 198 (298)
T 2cw6_A 195 MQEV 198 (298)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 5543
No 31
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic}
Probab=28.16 E-value=17 Score=17.87 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=8.1
Q ss_pred hhhhhHHHHhccc
Q psy4570 46 IAYIRDFACDYYF 58 (95)
Q Consensus 46 ~PYLRd~l~~~g~ 58 (95)
.|||| +|..+.
T Consensus 11 asylR--lwaLsL 21 (26)
T 2nvj_A 11 ASYLR--LWALSL 21 (26)
T ss_dssp CHHHH--GGGSCS
T ss_pred hHHHH--HHhhhc
Confidence 58999 776654
No 32
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.09 E-value=38 Score=21.46 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=20.7
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccC
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA 31 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~ 31 (95)
+++.|.|.. ...+..+.+++..+||.+.
T Consensus 26 ~~i~itG~~---~~~r~~l~~~i~~~Gg~v~ 53 (129)
T 2d8m_A 26 VVVVLSGFQ---NPFRSELRDKALELGAKYR 53 (129)
T ss_dssp EEEEEESCC---TTHHHHHHHHHHHTTEEEE
T ss_pred eEEEEeCCC---cHHHHHHHHHHHHcCCEEe
Confidence 357788865 3467788899999999544
No 33
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=27.38 E-value=74 Score=22.65 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=29.1
Q ss_pred EEEEecCh--HHHHhHHHHHHHHHHHcCCccCCCccchhhhhccchhhh
Q psy4570 2 ALLVLGDP--EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 48 (95)
Q Consensus 2 ~~gfEG~~--~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PY 48 (95)
+..|.|.. +.+..+.++..+.|++.|-...|. -.+-.+|+.|+
T Consensus 161 Vr~FsG~~~~~~~~~~~~~L~~~L~~~g~~~~~~----~y~~A~Yd~P~ 205 (227)
T 4b0y_A 161 VRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK----VYYTAGYNSPV 205 (227)
T ss_dssp EEEESSCCCHHHHHHHHHHHHHHHHHHTCCBCSS----CEEEEECC---
T ss_pred EEEecCcCCHHHHHHHHHHHHHHHHhCCCccCCC----cEEEEEeCCCC
Confidence 56788844 558888899999999999665444 34666677775
No 34
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=27.35 E-value=16 Score=18.02 Aligned_cols=10 Identities=20% Similarity=0.374 Sum_probs=6.9
Q ss_pred hhhhhHHHHhcc
Q psy4570 46 IAYIRDFACDYY 57 (95)
Q Consensus 46 ~PYLRd~l~~~g 57 (95)
.|||| ||..+
T Consensus 6 asylR--lwaLs 15 (26)
T 2jtw_A 6 ASYLR--LWALS 15 (26)
T ss_dssp HHHHH--HHHHH
T ss_pred hhHHH--HHHhh
Confidence 58999 66554
No 35
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=25.89 E-value=1.3e+02 Score=19.19 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccC--cHHHHHHHHHHHHH
Q psy4570 16 EDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTR 85 (95)
Q Consensus 16 ~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~--~~~l~~~V~~a~~~ 85 (95)
...+.+++.++|-..+=.++|.. |....+++++.++|+-...--.-.+|+| +++....+++.+..
T Consensus 69 ~~~~~~~~~~~~~~~i~sDnG~e-----f~s~~~~~~~~~~gI~~~~s~p~~P~~nG~vEr~~~tlk~~l~~ 135 (183)
T 3av9_A 69 AYFLLKLAGRWPVKTVHTDNGSN-----FTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQ 135 (183)
T ss_dssp HHHHHHHHHHSCCCEEECSSHHH-----HHCHHHHHHHHHHTCEEECCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEecCchh-----cchHHHHHHHHHCCCEEeecCCCCCcchhHHHHHHHHHHHHHHH
Confidence 34455567777543344455543 4444567888889987776666677776 56666666665544
No 36
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=25.37 E-value=63 Score=19.17 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=17.9
Q ss_pred ChHHHHhHHHHHHHHHHHcCC
Q psy4570 8 DPEDVKNNEDKIYSIAKRYGG 28 (95)
Q Consensus 8 ~~~~v~~~~~~~~~i~~~~GG 28 (95)
++++++...++...++.++||
T Consensus 57 ~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 57 DQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHhcCC
Confidence 456788889999999999997
No 37
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=24.83 E-value=50 Score=21.70 Aligned_cols=45 Identities=7% Similarity=-0.209 Sum_probs=32.0
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCccCC--Cccchhhhhccchh
Q psy4570 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG--ESNGRRGYMLTYII 46 (95)
Q Consensus 2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G--~~~G~~W~~~rF~~ 46 (95)
.+++.|...+.+...+.+..-++.|.+.... ....+.|++.||.-
T Consensus 43 ~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r 89 (174)
T 1g3k_A 43 LAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALR 89 (174)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTGG
T ss_pred EEEeCccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhccCcC
Confidence 5789999999888888888888888763211 13456777776643
No 38
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=24.80 E-value=41 Score=21.43 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=21.3
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccC
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA 31 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~ 31 (95)
+++.|.|+-+. -+..+.+++.++||.+.
T Consensus 14 ~~~ViTG~l~~---~R~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 14 MKILTLGKLSR---NKDEVKAMIEKLGGKLT 41 (113)
T ss_dssp CEEEECSCCSS---CHHHHHHHHHHTTCEEE
T ss_pred CEEEEEecCCC---CHHHHHHHHHHCCCEEc
Confidence 57889997532 57788889999999544
No 39
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.63 E-value=49 Score=21.08 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=20.3
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCc
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI 29 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~ 29 (95)
+++.|+|.-+ ...+..+.+++.++||.
T Consensus 26 ~~~v~TG~l~--~~~R~e~~~~i~~~Ggk 52 (112)
T 2ebu_A 26 LIFVITGVLE--SIERDEAKSLIERYGGK 52 (112)
T ss_dssp CEEEECSCCS--SSCHHHHHHHHHHTTCE
T ss_pred CEEEEeeeCC--CCCHHHHHHHHHHcCCE
Confidence 4688888753 23577888999999994
No 40
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=24.17 E-value=65 Score=20.01 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=25.9
Q ss_pred ChHHHHhHHHHHHHHHHHcCCccCCCccchhhhhccc
Q psy4570 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTY 44 (95)
Q Consensus 8 ~~~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF 44 (95)
++++++...++..+++.++||...-.+ .|=..|+
T Consensus 57 ~ee~~~~~ve~~~~iI~~~gG~i~~ve---~WG~R~L 90 (96)
T 2kjw_A 57 DQSQLALEKEIIQRALENYGARVEKVE---ELGLRRL 90 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSCCE---ECCCCCC
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEe---ccccccc
Confidence 467899999999999999999766443 5655554
No 41
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=23.78 E-value=54 Score=21.40 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=28.4
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCccCC--Cccchhhhhccchhh
Q psy4570 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG--ESNGRRGYMLTYIIA 47 (95)
Q Consensus 2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G--~~~G~~W~~~rF~~P 47 (95)
.+++.|...+.+...+.+..-++.|.+...- ....+.|++.||.-|
T Consensus 43 ~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (171)
T 1m4y_A 43 LAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRR 90 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred EEEeCccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhCCCCc
Confidence 5788999888888888887777776643110 012345555554333
No 42
>3sui_B Transient receptor potential cation channel subfa member 1; calmodulin, calcium-calmodulin, TRPV1, TRPV1 C-terminus, CAL complex, thermosensor; 1.95A {Rattus norvegicus}
Probab=22.66 E-value=21 Score=18.69 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=14.2
Q ss_pred CCccchhhhhccchhhhhhHH
Q psy4570 32 GESNGRRGYMLTYIIAYIRDF 52 (95)
Q Consensus 32 G~~~G~~W~~~rF~~PYLRd~ 52 (95)
|.-.|++|..... .|.|||.
T Consensus 16 grvsgrnwknf~l-vpllrd~ 35 (37)
T 3sui_B 16 GRVSGRNWKNFAL-VPLLRDA 35 (37)
T ss_pred cccccccccccch-hhhhhcc
Confidence 5666789975444 7899874
No 43
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=22.40 E-value=33 Score=24.19 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=23.3
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccCCC
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGE 33 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G~ 33 (95)
|++.+.|..+.-...+.++.++.+++||..+..
T Consensus 6 ~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~ 38 (241)
T 2vxb_A 6 CVFAFSGPVHEDAYDRSALETVVQDHGGLVLDT 38 (241)
T ss_dssp EEEEECCCSSTTSSCHHHHHHHHHHTTCEECTT
T ss_pred cEEEEecCCCCchhhHHHHHHHHHHCCCEEecC
Confidence 356677764333456778889999999987764
No 44
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=22.08 E-value=1.4e+02 Score=19.15 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=29.0
Q ss_pred chhhhhhHHHHhcccceeeeeccccccC--cHHHHHHHHHHHHHHHh
Q psy4570 44 YIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTRECT 88 (95)
Q Consensus 44 F~~PYLRd~l~~~g~~~dT~ETA~~Ws~--~~~l~~~V~~a~~~a~~ 88 (95)
|....+++++..+|+-....-.-.+|+| +++.+..+++.++.-+.
T Consensus 81 f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~~l~~~~~~~~~ 127 (200)
T 2x78_A 81 FTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLV 127 (200)
T ss_dssp HHSHHHHHHHHHHTCEEEECC-------CHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHcCceEeECCCCCCCccCHhHhhHHHHHHHHHHHHh
Confidence 5556678899999999888888888987 67777777777765544
No 45
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=21.73 E-value=1.1e+02 Score=20.40 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=26.2
Q ss_pred hhhhhhHHHH---hcccceeeeeccccccCcHHHHHHHHHHHH
Q psy4570 45 IIAYIRDFAC---DYYFIGDSFETSVPWDKTVLLCINVKKRLT 84 (95)
Q Consensus 45 ~~PYLRd~l~---~~g~~~dT~ETA~~Ws~~~~l~~~V~~a~~ 84 (95)
+.|+|...|. ++|+-+ ... -++ |+...+.+.+++++.
T Consensus 26 n~~~l~~~l~~l~~~G~~v-~~~-iv~-Dd~~~I~~~l~~~~~ 65 (178)
T 2pbq_A 26 SGKAIIDYLKDVIITPFEV-EYR-VIP-DERDLIEKTLIELAD 65 (178)
T ss_dssp HHHHHHHHHHHHBCSCCEE-EEE-EEC-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCEE-EEE-EcC-CCHHHHHHHHHHHHh
Confidence 5799999777 899877 443 555 888777777765543
No 46
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.70 E-value=1.1e+02 Score=18.71 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=20.0
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccCC
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG 32 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G 32 (95)
+++.|.|-..+ .+..+.+++..+||.+..
T Consensus 16 ~~i~~sg~~~~---~r~~l~~~i~~~GG~~~~ 44 (109)
T 2cou_A 16 CILSFLGFSDE---EKHSMEEMTEMQGGSYLP 44 (109)
T ss_dssp CBEEEESSCHH---HHHHHHHHHHHHTCBCCC
T ss_pred eEEEecCCCHH---HHHHHHHHHHHcCCEEec
Confidence 35667774443 466777899999997653
No 47
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=21.22 E-value=1e+02 Score=22.40 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=21.9
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccCC
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG 32 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G 32 (95)
+++.|.|...+ .+..+.+++..+||.+.+
T Consensus 203 ~~i~~tG~~~~---~r~~l~~li~~~GG~~~~ 231 (298)
T 3olc_X 203 CIICVTGLCGL---DRKEVQQLTVKHGGQYMG 231 (298)
T ss_dssp CEEEECSCCHH---HHHHHHHHHHHTTCEECS
T ss_pred eEEEEeCCCCc---cHHHHHHHHHHcCCEEec
Confidence 46778886654 577888999999996553
No 48
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=21.19 E-value=98 Score=20.79 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=21.6
Q ss_pred CEEEEecCh-HHHHhHHHHHHHHHHHcCCcc
Q psy4570 1 MALLVLGDP-EDVKNNEDKIYSIAKRYGGIP 30 (95)
Q Consensus 1 ~~~gfEG~~-~~v~~~~~~~~~i~~~~GG~~ 30 (95)
|.+.|+|++ +..+...+...+-++++-|..
T Consensus 4 m~i~f~gddlea~ekalkemirqarkfagtv 34 (170)
T 4hhu_A 4 MVIVFEGDDLEALEKALKEMIRQARKFAGTV 34 (170)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 578899987 345666666677788888853
No 49
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=21.12 E-value=59 Score=21.58 Aligned_cols=47 Identities=11% Similarity=-0.060 Sum_probs=31.4
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCccCC--Cccchhhhhccchhhh
Q psy4570 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG--ESNGRRGYMLTYIIAY 48 (95)
Q Consensus 2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G--~~~G~~W~~~rF~~PY 48 (95)
.++|.|...+.....+.+..-++.|.|..+. ....+.|++.+|.-||
T Consensus 49 ~~~~aG~~aD~~~l~~~~~~~~~~y~g~~~~~~~~l~~~~~~~~~~rp~ 97 (180)
T 2z3b_A 49 LAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKL 97 (180)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTGGGC
T ss_pred EEEeCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhCcCcc
Confidence 5789999999988888888888888752111 1234566665554443
No 50
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=21.09 E-value=53 Score=20.66 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=20.1
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCc
Q psy4570 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI 29 (95)
Q Consensus 1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~ 29 (95)
+++.|+|.-+. ..+..+.+++.++||.
T Consensus 36 ~~~v~TG~l~~--~~R~e~~~~i~~~Gg~ 62 (109)
T 2k6g_A 36 LIFVITGVLES--IERDEAKSLIERYGGK 62 (109)
T ss_dssp CEEEEESBCSS--CCHHHHHHHHHHTTCE
T ss_pred CEEEEeeeCCC--CCHHHHHHHHHHcCCE
Confidence 46888886432 3467888899999994
No 51
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=20.93 E-value=1e+02 Score=18.10 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEecChHHHHhHHHHHHHHHHHcCC
Q psy4570 3 LLVLGDPEDVKNNEDKIYSIAKRYGG 28 (95)
Q Consensus 3 ~gfEG~~~~v~~~~~~~~~i~~~~GG 28 (95)
+-..|+++.|+..++.+.+++++..|
T Consensus 61 v~I~G~~e~v~~A~~~I~~~i~e~~g 86 (89)
T 1j5k_A 61 ITITGTQDQIQNAQYLLQNSVKQYSG 86 (89)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhhhc
Confidence 44678888899999999998887654
No 52
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=20.91 E-value=1.5e+02 Score=17.79 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccC--cHHHHHHHHHHHHHHH
Q psy4570 16 EDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTREC 87 (95)
Q Consensus 16 ~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~--~~~l~~~V~~a~~~a~ 87 (95)
.+...+++.++|-..+=.++|.. |....+++++..+|+-...--.-.+|+| ++.....+++.+...+
T Consensus 42 ~~~l~~~~~~~gp~~i~sDnG~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~~lk~~~~~~~ 110 (152)
T 3kks_A 42 ALCILQLIQRYTVLHLHSDNGPC-----FTAHRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRLAAYQ 110 (152)
T ss_dssp HHHHHHHHHHSCCSEEEECSCHH-----HHSHHHHHHHHHTTCEEEESSCSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCcEEecCCchH-----hhHHHHHHHHHHcCCeecccCCcCCCccchhHHHHHHHHHHHHHHh
Confidence 33445677888833333444433 4445678889999998777666777776 5677777766665543
No 53
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=20.83 E-value=1.2e+02 Score=20.71 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=25.8
Q ss_pred hhhhhhHHHHhcccce-eeeeccccccCcHHHHHHHHHHH
Q psy4570 45 IIAYIRDFACDYYFIG-DSFETSVPWDKTVLLCINVKKRL 83 (95)
Q Consensus 45 ~~PYLRd~l~~~g~~~-dT~ETA~~Ws~~~~l~~~V~~a~ 83 (95)
+.|+|...|.++|+-+ -..-+-++ |+...+.+++++++
T Consensus 24 n~~~L~~~L~~~G~~~~v~~~~iV~-Dd~~~I~~al~~a~ 62 (195)
T 1di6_A 24 GIPALEEWLTSALTTPFELETRLIP-DEQAIIEQTLCELV 62 (195)
T ss_dssp HHHHHHHHHHHHBCSCEEEEEEEEE-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCceEEEEEeC-CCHHHHHHHHHHHH
Confidence 5799999999999752 13334455 77777666665554
No 54
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=20.76 E-value=97 Score=15.68 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=14.7
Q ss_pred HHhHHHHHHHHHHHcCCccC
Q psy4570 12 VKNNEDKIYSIAKRYGGIPA 31 (95)
Q Consensus 12 v~~~~~~~~~i~~~~GG~~~ 31 (95)
-.....++++|+.+.||-..
T Consensus 10 FadA~~RaRQIaAKig~~~~ 29 (31)
T 2kxh_B 10 FKDALQRARQIAAKIGGDAG 29 (31)
T ss_dssp HHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 34456788899999998654
No 55
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=20.63 E-value=1.2e+02 Score=19.94 Aligned_cols=49 Identities=8% Similarity=-0.037 Sum_probs=31.5
Q ss_pred cCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHHHHHHHHHHH
Q psy4570 30 PAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRL 83 (95)
Q Consensus 30 ~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l~~~V~~a~ 83 (95)
..|.+.|+.-. -+.|+|...|.++|+-+... +-++ |+...+.+++++++
T Consensus 20 ~tGdElg~i~D---sn~~~l~~~L~~~G~~v~~~-~iv~-Dd~~~i~~~l~~~~ 68 (169)
T 1y5e_A 20 TISDTRTEETD---KSGQLLHELLKEAGHKVTSY-EIVK-DDKESIQQAVLAGY 68 (169)
T ss_dssp EECSSCCTTTC---HHHHHHHHHHHHHTCEEEEE-EEEC-SSHHHHHHHHHHHH
T ss_pred EEcCccCeecc---ChHHHHHHHHHHCCCeEeEE-EEeC-CCHHHHHHHHHHHH
Confidence 34666643222 35899999999999855443 3344 77777776665554
No 56
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=20.56 E-value=1.2e+02 Score=19.81 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=24.0
Q ss_pred hhhhhhHHHHhcccceeeeeccccccCcHHHHHHHHH
Q psy4570 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (95)
Q Consensus 45 ~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l~~~V~~ 81 (95)
+.|||...|.+.|+-+.-..+ ++ |+...+.++++.
T Consensus 41 ng~~L~~~L~~~G~~v~~~~i-V~-Dd~~~i~~al~~ 75 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSL-VP-DDKIKILKAFTD 75 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEE-EC-SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEEEE-eC-CCHHHHHHHHHH
Confidence 479999999999986644432 33 677666665543
No 57
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=20.39 E-value=2e+02 Score=19.23 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccC--cHHHHHHHHHHHHH
Q psy4570 17 DKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTR 85 (95)
Q Consensus 17 ~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~--~~~l~~~V~~a~~~ 85 (95)
..+.+++.++|-..+=.++|.. |....+++++..+|+-...--.-.+|+| +++.+..+++.+..
T Consensus 50 ~~~~~~~~~~~~~~i~sDnG~e-----F~s~~~~~~~~~~gI~~~~s~p~~P~~NG~vEr~n~tlk~~l~~ 115 (239)
T 1ex4_A 50 YFLLKLAGRWPVKTIHTDNGSN-----FTGATVRAACDWAGIKQEDGIPYNPQSQGVVESMNKELKKIIGQ 115 (239)
T ss_dssp HHHHHHHHHSCCCEEEECCCHH-----HHCHHHHHHHTTTTCEECCCCC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEecCcHH-----HHHHHHHHHHHHCCCeEEECCCCCcccchHHHHHHHHHHHHHHH
Confidence 3344566666544444555544 3344567889999988887777888888 66777777666543
No 58
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=20.17 E-value=40 Score=25.86 Aligned_cols=52 Identities=10% Similarity=-0.054 Sum_probs=27.7
Q ss_pred EEEEecChHHH-HhHHHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHh
Q psy4570 2 ALLVLGDPEDV-KNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD 55 (95)
Q Consensus 2 ~~gfEG~~~~v-~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~ 55 (95)
.|-|||...-= .-+.+.+.+.++..| +..-.+||..|... +..|+||+++.+
T Consensus 51 fIt~EG~dGsGKTT~~~~Lae~L~~~g-vv~trEPg~~w~~~-~gn~~Lr~~yld 103 (376)
T 1of1_A 51 RVYIDGPHGMGKTTTTQLLVALGSRDD-IVYVPEPMTYWRVL-GASETIANIYTT 103 (376)
T ss_dssp EEEECSSTTSSHHHHHHHHHC----CC-EEEECCCHHHHHTT-SSSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhCC-EEEEeCCCCccccc-cchHHHHHHHhC
Confidence 47788866331 112233344444444 77788899888321 112788888765
No 59
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=20.16 E-value=1.6e+02 Score=18.06 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccC--cHHHHHHHHHHHHHH
Q psy4570 16 EDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTRE 86 (95)
Q Consensus 16 ~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~--~~~l~~~V~~a~~~a 86 (95)
.....+++.++|-..+=.++|.. |...-+++++..+|+-...--.-.+|+| +++....+++.+...
T Consensus 49 ~~~l~~~~~~~~~~~i~sD~G~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~~lk~~~~~~ 116 (163)
T 3l3u_A 49 AYFLLKLAGRWPVKTVHTDNGSN-----FTSTTVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQV 116 (163)
T ss_dssp HHHHHHHHHHSCCCEEEECCCGG-----GGSHHHHHHHHHHTCEEEETCCCCCCSTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEeecChHh-----hhhHHHHHHHHHCCceeeeCCCCCcccccHHHHHHHHHHHHHHHh
Confidence 33444577778754444444433 4455678899999998877777788887 577777776655543
No 60
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=20.15 E-value=33 Score=25.68 Aligned_cols=52 Identities=10% Similarity=-0.054 Sum_probs=27.7
Q ss_pred EEEEecChHHH-HhHHHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHh
Q psy4570 2 ALLVLGDPEDV-KNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD 55 (95)
Q Consensus 2 ~~gfEG~~~~v-~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~ 55 (95)
.|-|||...-= .-+.+.+.+.++..| +..-.+||..|... +..|+||+++.+
T Consensus 6 fI~~EG~dGsGKTT~~~~La~~L~~~g-v~~trEPg~~w~~~-~g~~~Lr~~yld 58 (331)
T 1e2k_A 6 RVYIDGPHGMGKTTTTQLLVALGSRDD-IVYVPEPMTYWRVL-GASETIANIYTT 58 (331)
T ss_dssp EEEECSCTTSSHHHHHHHHTC----CC-EEEECCCHHHHHTT-SSSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhCC-EEEEeCCCCccccc-ccHHHHHHHHhC
Confidence 57788866331 112233344444444 77778899877321 112788888875
No 61
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=20.04 E-value=24 Score=20.83 Aligned_cols=15 Identities=47% Similarity=0.771 Sum_probs=12.1
Q ss_pred eccccccCcHHHHHH
Q psy4570 64 ETSVPWDKTVLLCIN 78 (95)
Q Consensus 64 ETA~~Ws~~~~l~~~ 78 (95)
+-.|||+++..|.++
T Consensus 26 ~l~VPWd~Ie~lL~n 40 (64)
T 2lnz_A 26 ELTVPWDDIEALLKN 40 (64)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHH
Confidence 346899999998876
Done!