BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4571
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 347 bits (891), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 164/170 (96%), Positives = 169/170 (99%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
+DVAWHLLHESLFGSVADDQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILA
Sbjct: 235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 116/271 (42%), Gaps = 65/271 (23%)
Query: 42 VAEPFDDAVEERVINEEYKIWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFP 101
AE FDDAVEERVINEEYKIWKKNTPFLYDLV+ + L + + Q P
Sbjct: 8 AAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTH------------ALEWPSLTAQWLP 55
Query: 102 FPLSRQDVAWHLLHESLFGSVADDQK--LMIWDTRSHNVSKPSHTVD------------- 146
+++QD + +H + G+ D++ L+I +V PS
Sbjct: 56 -DVTKQDGKDYSVHRLILGTHTSDEQNHLLI-----ASVQLPSEDAQFDGSHYDNEKGEF 109
Query: 147 ----------------AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-- 188
H EVN + P + ++AT + V ++D K
Sbjct: 110 GGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG 169
Query: 189 -------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 241
H+ E + + W+P+ L S+ D + +WD++ +E DA++
Sbjct: 170 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN---- 225
Query: 242 LLFIHGGHTAKISDFSWNPNEPWVICSVSED 272
I GHTA + D +W+ + SV++D
Sbjct: 226 ---IFTGHTAVVEDVAWHLLHESLFGSVADD 253
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 140 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-------FESH 192
+P + H E LS+NP L + S D T+ LWD+ N K H F H
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAKNIFTGH 230
Query: 193 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 252
+ V W +E++ S D++L +WD + + + HTA+
Sbjct: 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----------AHTAE 279
Query: 253 ISDFSWNPNEPWVICSVSEDNIM 275
++ S+NP +++ + S D +
Sbjct: 280 VNCLSFNPYSEFILATGSADKTV 302
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-------------HTAEVNCL 155
V W +E++ S D++L +WD + + T DA HTA+++
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSK--IGEEQSTEDAEDGPPELLFIHGGHTAKISDF 384
Query: 156 SFNPYSEYILATGSADKTVALWDL 179
S+NP +I+ + S D + +W +
Sbjct: 385 SWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 347 bits (890), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 164/170 (96%), Positives = 169/170 (99%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
+DVAWHLLHESLFGSVADDQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILA
Sbjct: 237 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI
Sbjct: 297 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 356
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 357 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 116/271 (42%), Gaps = 65/271 (23%)
Query: 42 VAEPFDDAVEERVINEEYKIWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFP 101
AE FDDAVEERVINEEYKIWKKNTPFLYDLV+ + L + + Q P
Sbjct: 10 AAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTH------------ALEWPSLTAQWLP 57
Query: 102 FPLSRQDVAWHLLHESLFGSVADDQK--LMIWDTRSHNVSKPSHTVD------------- 146
+++QD + +H + G+ D++ L+I +V PS
Sbjct: 58 -DVTKQDGKDYSVHRLILGTHTSDEQNHLLI-----ASVQLPSEDAQFDGSHYDNEKGEF 111
Query: 147 ----------------AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-- 188
H EVN + P + ++AT + V ++D K
Sbjct: 112 GGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG 171
Query: 189 -------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 241
H+ E + + W+P+ L S+ D + +WD++ +E DA++
Sbjct: 172 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN---- 227
Query: 242 LLFIHGGHTAKISDFSWNPNEPWVICSVSED 272
I GHTA + D +W+ + SV++D
Sbjct: 228 ---IFTGHTAVVEDVAWHLLHESLFGSVADD 255
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 140 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-------FESH 192
+P + H E LS+NP L + S D T+ LWD+ N K H F H
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAKNIFTGH 232
Query: 193 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 252
+ V W +E++ S D++L +WD + + + HTA+
Sbjct: 233 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----------AHTAE 281
Query: 253 ISDFSWNPNEPWVICSVSEDNIM 275
++ S+NP +++ + S D +
Sbjct: 282 VNCLSFNPYSEFILATGSADKTV 304
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-------------HTAEVNCL 155
V W +E++ S D++L +WD + + T DA HTA+++
Sbjct: 329 VQWSPHNETILASSGTDRRLHVWDLSK--IGEEQSTEDAEDGPPELLFIHGGHTAKISDF 386
Query: 156 SFNPYSEYILATGSADKTVALWDL 179
S+NP +I+ + S D + +W +
Sbjct: 387 SWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 347 bits (889), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 164/170 (96%), Positives = 169/170 (99%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
+DVAWHLLHESLFGSVADDQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILA
Sbjct: 239 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI
Sbjct: 299 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 358
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 359 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 117/266 (43%), Gaps = 55/266 (20%)
Query: 42 VAEPFDDAVEERVINEEYKIWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFP 101
AE FDDAVEERVINEEYKIWKKNTPFLYDLV+ + L + + Q P
Sbjct: 12 AAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTH------------ALEWPSLTAQWLP 59
Query: 102 FPLSRQDVAWHLLHESLFGSVADDQK--LMI-----------WDTRSHNVSKPSHTVDA- 147
+++QD + +H + G+ D++ L+I +D ++ K
Sbjct: 60 -DVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGS 118
Query: 148 ------------HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS------- 188
H EVN + P + ++AT + V ++D K
Sbjct: 119 VCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD 178
Query: 189 --FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 246
H+ E + + W+P+ L S+ D + +WD++ +E DA++ I
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN-------IF 231
Query: 247 GGHTAKISDFSWNPNEPWVICSVSED 272
GHTA + D +W+ + SV++D
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADD 257
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 140 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-------FESH 192
+P + H E LS+NP L + S D T+ LWD+ N K H F H
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAKNIFTGH 234
Query: 193 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 252
+ V W +E++ S D++L +WD + + + HTA+
Sbjct: 235 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----------AHTAE 283
Query: 253 ISDFSWNPNEPWVICSVSEDNIM 275
++ S+NP +++ + S D +
Sbjct: 284 VNCLSFNPYSEFILATGSADKTV 306
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-------------HTAEVNCL 155
V W +E++ S D++L +WD + + T DA HTA+++
Sbjct: 331 VQWSPHNETILASSGTDRRLHVWDLSK--IGEEQSTEDAEDGPPELLFIHGGHTAKISDF 388
Query: 156 SFNPYSEYILATGSADKTVALWDL 179
S+NP +I+ + S D + +W +
Sbjct: 389 SWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 341 bits (875), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 162/170 (95%), Positives = 168/170 (98%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
+DV+WHLLHESLFGSVADDQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILA
Sbjct: 231 EDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA 290
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKI
Sbjct: 291 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKI 350
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
GEEQS EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 351 GEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 113/255 (44%), Gaps = 41/255 (16%)
Query: 46 FDDAVEERVINEEYKIWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFPFPLS 105
FDDAVEERVINEEYKIWKKNTPFLYDLV+ + + S ++ + F +
Sbjct: 8 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ---WLPDVTRPEGKDFSIH 64
Query: 106 RQDVAWHLLHES---LFGSVADDQKLMIWDTRSHNVSKP--------SHTVDA-----HT 149
R + H E + SV +D ++ K S ++ H
Sbjct: 65 RLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHE 124
Query: 150 AEVNCLSFNPYSEYILATGSADKTVALWDLR------------NLKLKLHSFESHKDEIF 197
EVN + P + I+AT + V ++D N L+L H+ E +
Sbjct: 125 GEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRL---RGHQKEGY 181
Query: 198 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 257
+ W+P+ L S+ D + +WD+S + +E DA+ I GHTA + D S
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAK-------TIFTGHTAVVEDVS 234
Query: 258 WNPNEPWVICSVSED 272
W+ + SV++D
Sbjct: 235 WHLLHESLFGSVADD 249
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 141 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS------FESHKD 194
P + H E LS+NP L + S D T+ LWD+ + + F H
Sbjct: 169 PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 228
Query: 195 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 254
+ V W +E++ S D++L +WD + + + HTA+++
Sbjct: 229 VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 277
Query: 255 DFSWNPNEPWVICSVSEDNIM 275
S+NP +++ + S D +
Sbjct: 278 CLSFNPYSEFILATGSADKTV 298
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWD-TRSHNVSKPSHTVDA----------HTAEVNCLSF 157
V W +E++ S D++L +WD ++ P D HTA+++ S+
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSW 382
Query: 158 NPYSEYILATGSADKTVALWDL 179
NP +++ + S D + +W +
Sbjct: 383 NPNEPWVICSVSEDNIMQVWQM 404
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 160/170 (94%), Positives = 165/170 (97%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
+DVAWHLLHESLFGSVADDQKLMIWDTRS+ SKPSH VDAHTAEVNCLSFNPYSE+ILA
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
TGSADKTVALWDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRL+VWDLSKI
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
GEEQS EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 353 GEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 402
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 63/287 (21%)
Query: 44 EPFDDAVEERVINEEYKIWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFPFP 103
E F+D VEERVINEEYKIWKKNTPFLYDLV+ + L + + Q P
Sbjct: 8 EXFEDTVEERVINEEYKIWKKNTPFLYDLVMTH------------ALQWPSLTVQWLP-E 54
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA---------------- 147
+++ + + LH + G+ D++ + R H + DA
Sbjct: 55 VTKPEGKDYALHWLVLGTHTSDEQNHLVVARVH-IPNDDAQFDASHCDSDKGEFGGFGSV 113
Query: 148 -----------HTAEVNCLSFNPYSEYILATGSADKTVALWDLR------------NLKL 184
H EVN + P + +I+AT + V ++D N L
Sbjct: 114 TGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDL 173
Query: 185 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 244
+L H+ E + + W+ + L S+ D + +WD++ +E DA+
Sbjct: 174 RL---RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAK-------A 223
Query: 245 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRL 291
I GH+A + D +W+ + SV++D + + +++ +K L
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHL 270
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 19/142 (13%)
Query: 141 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-------FESHK 193
P + H E LS+N L + S D TV LWD+ N K F H
Sbjct: 171 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDI-NAGPKEGKIVDAKAIFTGHS 229
Query: 194 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 253
+ V W +E++ S D++L +WD + + P L+ HTA++
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWD--------TRSNTTSKPSHLV---DAHTAEV 278
Query: 254 SDFSWNPNEPWVICSVSEDNIM 275
+ S+NP +++ + S D +
Sbjct: 279 NCLSFNPYSEFILATGSADKTV 300
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-----------AHTAEVNCLSF 157
V W +E++ S D++L +WD + + + HTA+++ S+
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 158 NPYSEYILATGSADKTVALWDL 179
NP +++ + S D + +W +
Sbjct: 385 NPNEPWVICSVSEDNIMQIWQM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 330 bits (846), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 158/170 (92%), Positives = 163/170 (95%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
+DVAWHLLHESLFGSVADDQKL IWDTRS+ SKPSH VDAHTAEVNCLSFNPYSE+ILA
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
TGSADKTVALWDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRL+VWDLSKI
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
GEEQS EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI Q
Sbjct: 353 GEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQ 402
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 63/287 (21%)
Query: 44 EPFDDAVEERVINEEYKIWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFPFP 103
E F+D VEERVINEEYKIWKKNTPFLYDLV + L + + Q P
Sbjct: 8 EXFEDTVEERVINEEYKIWKKNTPFLYDLVXTH------------ALQWPSLTVQWLP-E 54
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA---------------- 147
+++ + + LH + G+ D++ + R H + DA
Sbjct: 55 VTKPEGKDYALHWLVLGTHTSDEQNHLVVARVH-IPNDDAQFDASHCDSDKGEFGGFGSV 113
Query: 148 -----------HTAEVNCLSFNPYSEYILATGSADKTVALWDLR------------NLKL 184
H EVN + P + +I+AT + V ++D N L
Sbjct: 114 TGKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDL 173
Query: 185 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 244
+L H+ E + + W+ + L S+ D + +WD++ +E DA+
Sbjct: 174 RL---RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAK-------A 223
Query: 245 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRL 291
I GH+A + D +W+ + SV++D + + +++ +K L
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHL 270
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 19/142 (13%)
Query: 141 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-------FESHK 193
P + H E LS+N L + S D TV LWD+ N K F H
Sbjct: 171 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDI-NAGPKEGKIVDAKAIFTGHS 229
Query: 194 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 253
+ V W +E++ S D++L +WD + + P L+ HTA++
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWD--------TRSNTTSKPSHLV---DAHTAEV 278
Query: 254 SDFSWNPNEPWVICSVSEDNIM 275
+ S+NP +++ + S D +
Sbjct: 279 NCLSFNPYSEFILATGSADKTV 300
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-----------AHTAEVNCLSF 157
V W +E++ S D++L +WD + + + HTA+++ S+
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 158 NPYSEYILATGSADKTVALW 177
NP +++ + S D +W
Sbjct: 385 NPNEPWVICSVSEDNIXQIW 404
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 13/133 (9%)
Query: 116 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF-NPYSEYILATGSADKTV 174
+S + + D+K+ IWD+ + K HT D H+ +VNC F N + +LATGS D +
Sbjct: 676 DSYIATCSADKKVKIWDSAT---GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 175 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE- 233
LWDL N K ++ H + + ++SP +E +LAS D L +WD+ E +S
Sbjct: 733 KLWDL-NQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINV 790
Query: 234 -----DAEDGPPE 241
+ED PPE
Sbjct: 791 KRFFLSSED-PPE 802
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 18/133 (13%)
Query: 145 VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-P 203
+ AH EV C +F+ YI AT SADK V +WD KL +H+++ H +++ ++
Sbjct: 660 IKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNK 717
Query: 204 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 263
N +LA+ D L +WDL++ E ++T +F GHT ++ ++P++
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQ-KECRNT----------MF---GHTNSVNHCRFSPDDE 763
Query: 264 WVICSVSEDNIMQ 276
++ S S D ++
Sbjct: 764 -LLASCSADGTLR 775
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 150 AEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 209
A+V+C +P+ EY+ A G D + + +L N ++ S HK + +Q++ +T++
Sbjct: 969 AQVSCCCLSPHLEYV-AFGDEDGAIKIIELPNNRV-FSSGVGHKKAVRHIQFTADGKTLI 1026
Query: 210 ASSGTDRRLHVWD 222
+SS D + VW+
Sbjct: 1027 SSS-EDSVIQVWN 1038
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 13/133 (9%)
Query: 116 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF-NPYSEYILATGSADKTV 174
+S + + D+K+ IWD+ + K HT D H+ +VNC F N + +LATGS D +
Sbjct: 669 DSYIATCSADKKVKIWDSAT---GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 175 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE- 233
LWDL N K ++ H + + ++SP +E +LAS D L +WD+ E +S
Sbjct: 726 KLWDL-NQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINV 783
Query: 234 -----DAEDGPPE 241
+ED PPE
Sbjct: 784 KRFFLSSED-PPE 795
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 18/133 (13%)
Query: 145 VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-P 203
+ AH EV C +F+ YI AT SADK V +WD KL +H+++ H +++ ++
Sbjct: 653 IKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNK 710
Query: 204 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 263
N +LA+ D L +WDL++ E ++T +F GHT ++ ++P++
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQ-KECRNT----------MF---GHTNSVNHCRFSPDDE 756
Query: 264 WVICSVSEDNIMQ 276
++ S S D ++
Sbjct: 757 -LLASCSADGTLR 768
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 150 AEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 209
A+V+C +P+ EY+ A G D + + +L N ++ S HK + +Q++ +T++
Sbjct: 962 AQVSCCCLSPHLEYV-AFGDEDGAIKIIELPNNRV-FSSGVGHKKAVRHIQFTADGKTLI 1019
Query: 210 ASSGTDRRLHVWD 222
+SS D + VW+
Sbjct: 1020 SSS-EDSVIQVWN 1031
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 65 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 120
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 121 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 177
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 178 AS-GQCLKTLIDDDNPP 193
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 17 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 73
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 74 SDSNLLVSASDDKTLKIWDVS 94
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 66 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 121
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 122 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 178
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 179 AS-GQCLKTLIDDDNPP 194
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 18 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 74
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 75 SDSNLLVSASDDKTLKIWDVS 95
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 66 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 121
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 122 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 178
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 179 AS-GQCLKTLIDDDNPP 194
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 18 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 74
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 75 SDSNLLVSASDDKTLKIWDVS 95
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 72 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 127
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 128 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 184
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 185 AS-GQCLKTLIDDDNPP 200
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 24 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 80
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 81 SDSNLLVSASDDKTLKIWDVS 101
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 83 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 138
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 139 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 195
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 196 AS-GQCLKTLIDDDNPP 211
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 35 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 91
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 92 SDSNLLVSASDDKTLKIWDVS 112
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 72 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 127
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 128 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 184
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 185 AS-GQCLKTLIDDDNPP 200
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 24 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 80
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 81 SDSNLLVSASDDKTLKIWDVS 101
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 21/173 (12%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 69 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 124
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 125 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 181
Query: 224 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
+ G+ T +D PP +S ++PN +++ + + DN ++
Sbjct: 182 AS-GQCLKTLIDDDNPP------------VSFVKFSPNGKYIL-AATLDNTLK 220
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 134 RSHNVSKPSH----TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF 189
R KP++ T+ HT V+ + F+P E+ LA+ SADK + +W + K + +
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTI 64
Query: 190 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
HK I V WS + +L S+ D+ L +WD+S
Sbjct: 65 SGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVS 98
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 62 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 117
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 118 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 174
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 175 AS-GQCLKTLIDDDNPP 190
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 14 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 70
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 71 SDSNLLVSASDDKTLKIWDVS 91
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 21/173 (12%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 69 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 124
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 125 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 181
Query: 224 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
+ G+ T +D PP +S ++PN +++ + + DN ++
Sbjct: 182 AS-GQCLKTLIDDDNPP------------VSFVKFSPNGKYIL-AATLDNTLK 220
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 134 RSHNVSKPSH----TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF 189
R KP++ T+ HT V+ + F+P E+ LA+ SADK + +W + K + +
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTI 64
Query: 190 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
HK I V WS + +L S+ D+ L +WD+S
Sbjct: 65 SGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVS 98
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 71 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 126
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 127 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 183
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 184 AS-GQCLKTLIDDDNPP 199
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 23 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 79
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 80 SDSNLLVSASDDKTLKIWDVS 100
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 72 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 127
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 128 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 184
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 185 AS-GQCLKTLIDDDNPP 200
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 24 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 80
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 81 SDSNLLVSASDDKTLKIWDVS 101
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 67 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 122
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 123 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 179
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 180 AS-GQCLKTLIDDDNPP 195
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 19 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 75
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 76 SDSNLLVSASDDKTLKIWDVS 96
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 90 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 145
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 146 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 202
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 203 AS-GQCLKTLIDDDNPP 218
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 42 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 98
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 99 SDSNLLVSASDDKTLKIWDVS 119
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 88 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 143
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 144 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 200
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 201 AS-GQCLKTLIDDDNPP 216
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 40 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 96
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 97 SDSNLLVSASDDKTLKIWDVS 117
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 69 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 124
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +WD
Sbjct: 125 IV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 181
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 182 AS-GQCLKTLIDDDNPP 197
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 134 RSHNVSKPSH----TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF 189
R KP++ T+ HT V+ + F+P E+ LA SADK + +W + K + +
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEW-LAASSADKLIKIWGAYDGKFE-KTI 64
Query: 190 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
HK I V WS + +L S+ D+ L +WD+S
Sbjct: 65 SGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVS 98
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 69 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 124
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ + L + +H D + V ++ + +++ SS D +WD
Sbjct: 125 IV-SGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 181
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 182 AS-GQCLKTLIDDDNPP 197
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 21 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 77
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 78 SDSNLLVSASDDKTLKIWDVS 98
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 104 LSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
L DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S
Sbjct: 69 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNL 124
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
I+ +GS D++V +WD++ + L + +H D + V ++ + +++ SS D +WD
Sbjct: 125 IV-SGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 181
Query: 224 SKIGEEQSTEDAEDGPP 240
+ G+ T +D PP
Sbjct: 182 AS-GQCLKTLIDDDNPP 197
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
T+ HT V+ + F+P E+ LA+ SADK + +W + K + + HK I V WS
Sbjct: 21 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS- 77
Query: 204 HNETILASSGTDRRLHVWDLS 224
+ +L S+ D+ L +WD+S
Sbjct: 78 SDSNLLVSASDDKTLKIWDVS 98
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 116 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTV 174
+ + + D+K+ IW++ + + HT D H+ +VNC F S + +LATGS+D +
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELV---HTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Query: 175 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 231
LWDL N K ++ H + + ++SP ++ +LAS D L +WD + E +S
Sbjct: 732 KLWDL-NQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWDATSANERKS 786
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 16/189 (8%)
Query: 105 SRQDVAWHLLHESLFGSVADDQKLMIWDT---RSHNVSKPSHTVDAHTAEVNCLSFNPYS 161
S + V W+ +F S + D+ L +WDT ++ +V TV +H +P S
Sbjct: 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH-------HMSPVS 153
Query: 162 --EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 219
++A G+ V L DL++ H + H+ EI V WSP + ILA++ D R+
Sbjct: 154 TKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 220 VWDLSKIGEEQSTEDAEDGPPELLF--IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQE 277
+WD+ + T D +G + H K++ + + ++ +V DN M+
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL-TVGTDNRMRL 271
Query: 278 YCDSTDSDT 286
+ S +T
Sbjct: 272 WNSSNGENT 280
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRN------------LKLKLHSFESHKDE 195
H +N L P + +G +D + L+DL N + + H+
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 196 IFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
+ VQW PH+ + SS D+ L VWD + +
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTL 132
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 24/156 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S DKTV LW+ R
Sbjct: 361 SASDDKTVKLWNRNGQLL----QTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-R 414
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
N +L L + H ++ V +SP ++TI AS+ D+ + +W+ +
Sbjct: 415 NGQL-LQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRNG--------------- 457
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
+LL GH++ + +++P+ I S S+D ++
Sbjct: 458 QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVK 492
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S +DD+ + +W+ + T+ H++ VN ++F P + I A+ S DKTV LW+ R
Sbjct: 238 SASDDKTVKLWNRNGQLL----QTLTGHSSSVNGVAFRPDGQTI-ASASDDKTVKLWN-R 291
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
N +L L + H ++ V +SP +TI AS+ D+ + +W+
Sbjct: 292 NGQL-LQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN 331
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 24/156 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S DKTV LW+ R
Sbjct: 74 SASDDKTVKLWNRNGQLL----QTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-R 127
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
N +L L + H ++ V +SP +TI AS+ D+ + +W+ +
Sbjct: 128 NGQL-LQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNG--------------- 170
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
+LL GH++ + +++P+ I S S+D ++
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVK 205
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 20/142 (14%)
Query: 135 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKD 194
SH K + ++AH++ V ++F+P + I A+ S DKTV LW+ RN +L L + H
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQL-LQTLTGHSS 58
Query: 195 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 254
++ V +SP +TI AS+ D+ + +W+ + +LL GH++ +
Sbjct: 59 SVWGVAFSPDGQTI-ASASDDKTVKLWNRNG---------------QLLQTLTGHSSSVR 102
Query: 255 DFSWNPNEPWVICSVSEDNIMQ 276
+++P+ I S S+D ++
Sbjct: 103 GVAFSPDGQ-TIASASDDKTVK 123
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 24/156 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S DKTV LW+ R
Sbjct: 156 SASDDKTVKLWNRNGQLL----QTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN-R 209
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
N +L L + H + V +SP +TI AS+ D+ + +W+ +
Sbjct: 210 NGQL-LQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNG--------------- 252
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
+LL GH++ ++ ++ P+ I S S+D ++
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQ-TIASASDDKTVK 287
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 24/156 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S DKTV LW+ R
Sbjct: 443 SASDDKTVKLWNRNGQLL----QTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-R 496
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
N +L L + H + V +SP +TI AS+ D+ + +W+ +
Sbjct: 497 NGQL-LQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNG--------------- 539
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
+LL GH++ + +++P+ I S S D ++
Sbjct: 540 QLLQTLTGHSSSVWGVAFSPDGQ-TIASASSDKTVK 574
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 24/156 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S DKTV LW+ R
Sbjct: 279 SASDDKTVKLWNRNGQLL----QTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN-R 332
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
N + L + H ++ V +SP +TI AS+ D+ + +W+ +
Sbjct: 333 NGQ-HLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNG--------------- 375
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
+LL GH++ + +++P+ I S S+D ++
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVK 410
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 178
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S+DKTV LW+
Sbjct: 525 SASDDKTVKLWNRNGQLL----QTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN 577
>pdb|1IQ3|A Chain A, Solution Structure Of The Eps15 Homology Domain Of A Human
Pob1
Length = 110
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W +T+EQREYY QF +LQ DPS ISG VA+ FF SKL + EL IW
Sbjct: 14 WRITEEQREYYVNQFRSLQ-----PDPS-SFISGSVAKNFFTKSKLSIPELSYIW 62
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 134 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH------ 187
++ V K V HTA V +++ P+++ ++A+GS D TV +W++ + L L
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 188 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+ E H + V W P + +L S+G D + VWD+
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEY 163
D+AW ++++ S ++D +M+W+ + +P T++ HT V ++++P ++
Sbjct: 86 DIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN 145
Query: 164 ILATGSADKTVALWDLRNLKLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
+L + D + +WD+ L + H D I+ V WS + ++ +S D+R+ V +
Sbjct: 146 VLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-RDGALICTSCRDKRVRVIE 204
Query: 223 LSK 225
K
Sbjct: 205 PRK 207
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 19/126 (15%)
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
TG DK V L H + + W PHN+ ++AS D + VW++
Sbjct: 67 TGRVDKNVPL------------VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDT 286
G E + GHT ++ +W+P V+ S DN++ + T +
Sbjct: 115 GLVLPLR-------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAV 167
Query: 287 KTMRLD 292
T+ D
Sbjct: 168 LTLGPD 173
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEY 163
D+AW ++++ S ++D +M+W+ + +P T++ HT V ++++P ++
Sbjct: 86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN 145
Query: 164 ILATGSADKTVALWDLRNLKLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
+L + D + +WD+ L + H D I+ V WS + ++ +S D+R+ V +
Sbjct: 146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-RDGALICTSCRDKRVRVIE 204
Query: 223 LSK 225
K
Sbjct: 205 PRK 207
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 134 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH------ 187
++ V K V HTA V +++ P+++ ++A+GS D TV +W++ + L L
Sbjct: 66 KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 188 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+ E H + V W P + +L S+G D + VWD+
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 19/126 (15%)
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
TG DK V L H + + W PHN+ ++AS D + VW++
Sbjct: 67 TGRVDKNVPL------------VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDT 286
G E + GHT ++ +W+P V+ S DN++ + T +
Sbjct: 115 GLVLPLR-------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV 167
Query: 287 KTMRLD 292
T+ D
Sbjct: 168 LTLGPD 173
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 127 KLMIWDTRSHNVSKPSH--TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
+L IWD R ++PS ++ ++C+ +P ++++ATG D +++WD+R +
Sbjct: 213 QLKIWDFRQQG-NEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM 271
Query: 185 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 244
+ ++H+ E+++V + P N L + D L WD S E+S+ LF
Sbjct: 272 PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSS----------LF 321
Query: 245 IHGGHTA 251
GG ++
Sbjct: 322 HQGGRSS 328
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 174 VALWDLR---NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 230
+ +WD R N ++ S + + V P+ + ++A+ G D L +WD+ Q
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDV-----RQ 268
Query: 231 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKT 288
T P LL H A++ + ++P+ P + + SED + + STD K+
Sbjct: 269 GTM-----PVSLL---KAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKS 318
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
+L S D+++ IW T + S + H V ++++P Y LA+ S D T +
Sbjct: 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY-LASASFDATTCI 87
Query: 177 WDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 235
W + + + E H++E+ V W+P +LA+ D+ + VW++ D
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEV----------DE 136
Query: 236 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEY 278
ED E + + HT + W+P++ ++ S S D+ ++ Y
Sbjct: 137 ED-EYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLY 177
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 12/193 (6%)
Query: 74 VNNYVANIS-----CILNISILFFEIIFTQNFPFPLSRQDVAWHLLHESLFGSVADDQKL 128
NY+A+ S CI + FE + T + VAW +L + + D+ +
Sbjct: 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEG-HENEVKSVAW-APSGNLLATCSRDKSV 129
Query: 129 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW-DLRNLKLKLH 187
+W+ + + +++HT +V + ++P S+ +LA+ S D TV L+ + + +
Sbjct: 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCA 188
Query: 188 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP--PELLFI 245
+ E H+ ++ + + P + LAS DR + +W G EQ + P + +
Sbjct: 189 TLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247
Query: 246 HGGHTAKISDFSW 258
G H+ I D +W
Sbjct: 248 SGFHSRTIYDIAW 260
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 60 KIWKKNTPF-LYDLVVNNYVANISCILNISILFFEIIFTQNFPFPLSRQDVAWHLLHESL 118
+IW++ P + + + CI +S I+ D+AW L +L
Sbjct: 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIY-----------DIAWCQLTGAL 267
Query: 119 FGSVADDQKLMIWDTRSHNVSKP-----SHTVDAHTAEVNCLSFNPYSEYILATGSADKT 173
+ DD + + + + +P +H AH+ +VNC+++NP +LA+ S D
Sbjct: 268 ATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327
Query: 174 VALW 177
VA W
Sbjct: 328 VAFW 331
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 119 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 178
F SV D +L +W+T + +T AH + VN LS +P +YI ATG DK + +WD
Sbjct: 187 FASVGWDGRLKVWNTNF----QIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWD 241
Query: 179 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+ NL F++ I Q+ ++P + + + GTD+ + +++L
Sbjct: 242 ILNLTYPQREFDA-GSTINQIAFNPKLQWV--AVGTDQGVKIFNL 283
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 121 SVADDQKLMIW----DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
S + D+ +MIW + ++ P + H V+ L+ + + + +++ S DKT+ L
Sbjct: 44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTLRL 102
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 228
WDLR F H+ E++ V +SP N IL S+G +R + +W++ +GE
Sbjct: 103 WDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI--LGE 150
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 159 PYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 218
P++ Y + G D + +W+ N +++ ++F++H+ + + SP+ + I A+ G D++L
Sbjct: 182 PFAPYFASVG-WDGRLKVWNT-NFQIR-YTFKAHESNVNHLSISPNGKYI-ATGGKDKKL 237
Query: 219 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 271
+WD+ + Q DA G T I+ ++NP WV +
Sbjct: 238 LIWDILNLTYPQREFDA------------GST--INQIAFNPKLQWVAVGTDQ 276
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 152 VNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 211
+ + F+P ++ LATG+ D+ + +WD+ N K+ + + H+ +I+ + + P + +++
Sbjct: 126 IRSVCFSPDGKF-LATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 212 SGTDRRLHVWDLSKIGEEQSTEDAEDG 238
SG DR + +WDL + G+ T EDG
Sbjct: 184 SG-DRTVRIWDL-RTGQCSLTLSIEDG 208
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 125 DQKLMIWDTRS----HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
D+ + +WD+ + + + + H V + F + ++ +GS D++V LW+L+
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQ 286
Query: 181 NLKLKLHS-----------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
N K S + HKD + V + ++E IL+ S DR + WD
Sbjct: 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWD 338
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS-EYILATGSADKTVALWDL 179
S + D+ + +W+T S + H V+C+ F+P + + + + S DKTV +W+L
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
N KL+ + H + V SP + ++ AS G D + +WDL++ + S E
Sbjct: 549 SNCKLR-STLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLE------ 600
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
+ I ++PN W +C+ +E I
Sbjct: 601 ---------ANSVIHALCFSPNRYW-LCAATEHGI 625
>pdb|1FI6|A Chain A, Solution Structure Of The Reps1 Eh Domain
Length = 92
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W +TDEQR+YY QF +Q + I G A++FF SKLP+ EL IW
Sbjct: 1 WKITDEQRQYYVNQFKTIQPDLN------GFIPGSAAKEFFTKSKLPILELSHIW 49
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 119 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA--DKTVAL 176
S +D + IWD RS S P T H A V +++ P+ +LATG DK +
Sbjct: 232 LASGGNDNVVQIWDARS---SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLSKIG 227
W+ ++++ ++ ++ + WSPH++ I+++ G D L +W S G
Sbjct: 289 WNAAT-GARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 22/147 (14%)
Query: 115 HESLFGSVADDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 173
H+ F SV L+ I+D S + T+ H A V CLS+N ++L++GS
Sbjct: 144 HDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN---RHVLSSGSRSGA 197
Query: 174 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 233
+ D+R ++ + + H E+ + W + LAS G D + +W
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWR-SDGLQLASGGNDNVVQIW------------ 244
Query: 234 DAEDGPPELLFIHGGHTAKISDFSWNP 260
DA P+ F H A + +W P
Sbjct: 245 DARSSIPK--FTKTNHNAAVKAVAWCP 269
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 123 ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 182
+DD ++ +++ +N + +AH + ++ +P Y+L+ GS D TV LW+ N
Sbjct: 74 SDDFRIRVFN---YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENN 129
Query: 183 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK--------IGEEQSTED 234
+FE H+ + V ++P + + AS DR + VW L + G+E+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 235 AEDGP----PELLFIHG-------------------GHTAKISDFSWNPNEPWVICSVSE 271
+ P P ++ GH + +S ++P P +I S SE
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSE 248
Query: 272 DNIMQEYCDSTDSDTKTMRLDSIRS 296
D ++ + ST KT+ + RS
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGLERS 273
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 123 ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 182
+DD ++ +++ +N + +AH + ++ +P Y+L+ GS D TV LW+ N
Sbjct: 74 SDDFRIRVFN---YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENN 129
Query: 183 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK--------IGEEQSTED 234
+FE H+ + V ++P + + AS DR + VW L + G+E+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 235 AEDGP----PELLFIHG-------------------GHTAKISDFSWNPNEPWVICSVSE 271
+ P P ++ GH + +S ++P P +I S SE
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSE 248
Query: 272 DNIMQEYCDSTDSDTKTMRLDSIRS 296
D ++ + ST KT+ + RS
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGLERS 273
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 123 ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 182
+DD ++ +++ +N + +AH + ++ +P Y+L+ GS D TV LW+ N
Sbjct: 74 SDDFRIRVFN---YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENN 129
Query: 183 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK--------IGEEQSTED 234
+FE H+ + V ++P + + AS DR + VW L + G+E+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 235 AEDGP----PELLFIHG-------------------GHTAKISDFSWNPNEPWVICSVSE 271
+ P P ++ GH + +S ++P P +I S SE
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSE 248
Query: 272 DNIMQEYCDSTDSDTKTMRLDSIRS 296
D ++ + ST KT+ + RS
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGLERS 273
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D + IWD N + + HT V CL Y E ++ TGS+D TV +WD+ N
Sbjct: 152 DNTIKIWD---KNTLECKRILTGHTGSVLCLQ---YDERVIITGSSDSTVRVWDV-NTGE 204
Query: 185 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
L++ H + + +++ N ++ + DR + VWD++
Sbjct: 205 MLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMA 241
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D+ + +W+T + + T++ H + CL Y + ++ +GS+D T+ LWD+
Sbjct: 271 SASGDRTIKVWNTSTCEFVR---TLNGHKRGIACLQ---YRDRLVVSGSSDNTIRLWDI- 323
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
L E H++ + +++ N+ I+ S D ++ VWDL
Sbjct: 324 ECGACLRVLEGHEELVRCIRFD--NKRIV-SGAYDGKIKVWDL 363
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 114 LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 173
+ + + + D+ + +WD S + H A VN + F+ +YI+ + S D+T
Sbjct: 221 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIV-SASGDRT 277
Query: 174 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+ +W+ + + + HK I +Q + + ++ S +D + +WD+
Sbjct: 278 IKVWNTSTCEF-VRTLNGHKRGIACLQ---YRDRLVVSGSSDNTIRLWDI 323
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 131 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE 190
W H++ + H + V CL Y + + +G D T+ +WD L+ K
Sbjct: 116 WRCGRHSLQRI-HCRSETSKGVYCLQ---YDDQKIVSGLRDNTIKIWDKNTLECK-RILT 170
Query: 191 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
H + +Q ++E ++ + +D + VWD++ GE +T
Sbjct: 171 GHTGSVLCLQ---YDERVIITGSSDSTVRVWDVNT-GEMLNT 208
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 123 ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 182
+DD ++ +++ +N + +AH + ++ +P Y+L +GS D TV LW+ N
Sbjct: 74 SDDFRIRVFN---YNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENN 129
Query: 183 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK--------IGEEQSTED 234
+FE H+ + V ++P + + AS DR + VW L + G+E+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 235 AEDGP----PELLFIHG-------------------GHTAKISDFSWNPNEPWVICSVSE 271
+ P P ++ GH + +S ++P P +I S SE
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSE 248
Query: 272 DNIMQEYCDSTDSDTKTMRLDSIRS 296
D ++ + ST KT+ + RS
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGLERS 273
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTVALWDL 179
S + D+ + +W+T V K + ++H+ V+C+ F+P S I+ + DK V +W+L
Sbjct: 145 SGSRDKTIKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
N KLK + H + V SP + ++ AS G D + +WDL++ G+ T D D
Sbjct: 203 ANCKLKTNHI-GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDII 259
Query: 240 PELLF 244
L F
Sbjct: 260 NALCF 264
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D L +WD + ++ HT +V ++F+ + I++ GS DKT+ LW+ +
Sbjct: 107 DGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCK 162
Query: 185 KLHSFESHKDEIFQVQWSPHNET-ILASSGTDRRLHVWDLSK-------IGEEQSTEDAE 236
ESH + + V++SP++ I+ S G D+ + VW+L+ IG
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT 222
Query: 237 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYC 279
P L GG + W+ NE + ++ +I+ C
Sbjct: 223 VSPDGSLCASGGKDGQA--MLWDLNEGKHLYTLDGGDIINALC 263
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL----RNLKLKLHSFESHKDEIFQV 199
T+ H V ++ P ++ + S DKT+ +W L N + + H + V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 200 QWSPHNETILASSGTDRRLHVWDLS 224
S + L+ S D L +WDL+
Sbjct: 93 VISSDGQFALSGS-WDGTLRLWDLT 116
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTVALWDL 179
S + D+ + +W+T V K + ++H+ V+C+ F+P S I+ + DK V +W+L
Sbjct: 122 SGSRDKTIKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
N KLK + H + V SP + ++ AS G D + +WDL++ G+ T D D
Sbjct: 180 ANCKLKTNHI-GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDII 236
Query: 240 PELLF 244
L F
Sbjct: 237 NALCF 241
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D L +WD + ++ HT +V ++F+ + I++ GS DKT+ LW+ +
Sbjct: 84 DGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCK 139
Query: 185 KLHSFESHKDEIFQVQWSPHNET-ILASSGTDRRLHVWDLSK-------IGEEQSTEDAE 236
ESH + + V++SP++ I+ S G D+ + VW+L+ IG
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT 199
Query: 237 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYC 279
P L GG + W+ NE + ++ +I+ C
Sbjct: 200 VSPDGSLCASGGKDGQA--MLWDLNEGKHLYTLDGGDIINALC 240
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL----RNLKLKLHSFESHKDEIFQV 199
T+ H V ++ P ++ + S DKT+ +W L N + + H + V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 200 QWSPHNETILASSGTDRRLHVWDLS 224
S + L+ S D L +WDL+
Sbjct: 70 VISSDGQFALSGS-WDGTLRLWDLT 93
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 123 ADDQKLMIWD-TRSHNVSK-PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ DQ ++WD T +S S HTA+V LS N + + +GS D TV LWDLR
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASS--GTDR 216
+ ++ H+ +I V++ P + S GT R
Sbjct: 237 ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 142 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL-RNLKLKLHSFE---SHKDEIF 197
S + H + + P E L TGS D+T LWD+ ++ + E H ++
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209
Query: 198 QVQWSPHNETILASSGTDRRLHVWDL 223
+ + N + S D + +WDL
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDL 235
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 165 LATGSADKTVALWDLRN-LKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 222
LAT S+D++V ++D+RN ++ + H+ ++QV W+ P ILAS DR++ +W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW- 86
Query: 223 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI--CSVSEDNI 274
E+G E H GH + ++ W P++ +I C S+ I
Sbjct: 87 -----------REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 159 PYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHN-ETILASSGTDR 216
P ILA+ S D+ V +W N K H H + V W+PH+ ILA +D
Sbjct: 68 PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG 127
Query: 217 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 260
+ + L+ GE G E+ I+ HT + SW P
Sbjct: 128 AISL--LTYTGE---------GQWEVKKINNAHTIGCNAVSWAP 160
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 13/129 (10%)
Query: 119 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---YSEYILATGSADKTVA 175
F S D + +W K ++AH+ V +++ P +A+ S D V
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241
Query: 176 LWDLRNLKLK------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 229
+W + LH F D ++ V WS ILA SG D ++ +W S G+
Sbjct: 242 IWTCDDASSNTWSPKLLHKF---NDVVWHVSWSI-TANILAVSGGDNKVTLWKESVDGQW 297
Query: 230 QSTEDAEDG 238
D G
Sbjct: 298 VCISDVNKG 306
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
S+ S ++D + +WD + + + T+ HT V +SF+ +S +LA+ SAD T+ L
Sbjct: 121 SVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFD-HSGKLLASCSADMTIKL 176
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
WD + + + + H + V P+ + I+++S D+ + +W++
Sbjct: 177 WDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSAS-RDKTIKMWEV 221
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S ADD+ L +WD ++ K T++AH V L F+ + Y++ TGS D+TV +W+ R
Sbjct: 355 SCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYVV-TGSVDQTVKVWECR 410
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
L S + D + +WD + + H H V+ +S P ++I++ S DKT+ +W
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVSIMPNGDHIVS-ASRDKTIKMW 219
Query: 178 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
+++ + +F H++ + V+ + T++AS D+ + VW
Sbjct: 220 EVQT-GYCVKTFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVW 261
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY------------- 163
+L S ++DQ + +W + + H V C+S+ P S Y
Sbjct: 247 TLIASCSNDQTVRVWVVATKECKAE---LREHRHVVECISWAPESSYSSISEATGSETKK 303
Query: 164 ------ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 217
L +GS DKT+ +WD+ + + L + H + + V + + IL S D+
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKT 361
Query: 218 LHVWD 222
L VWD
Sbjct: 362 LRVWD 366
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPH 204
H A+V FNP ++++AT S D TV LWDLRN+K K +S+ + H+ + ++P
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEMPHEKPVNAAYFNPT 261
Query: 205 NETILASSGTDRR 217
+ T L + TD+R
Sbjct: 262 DSTKLLT--TDQR 272
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 161 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
S +LATG D T L L ++ + HK ++ +++P + ++A+S D + +
Sbjct: 174 SRQMLATG--DSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL 231
Query: 221 WDLSKIGEEQS 231
WDL I ++ S
Sbjct: 232 WDLRNIKDKNS 242
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPH 204
H A+V FNP ++++AT S D TV LWDLRN+K K +S+ + H+ + ++P
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEMPHEKPVNAAYFNPT 260
Query: 205 NETILASSGTDRR 217
+ T L + TD+R
Sbjct: 261 DSTKLLT--TDQR 271
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 161 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
S +LATG D T L L ++ + HK ++ +++P + ++A+S D + +
Sbjct: 173 SRQMLATG--DSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL 230
Query: 221 WDLSKIGEEQS 231
WDL I ++ S
Sbjct: 231 WDLRNIKDKNS 241
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 119 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 178
F S D+K M+WD RS + T H ++VN + + P + A+GS D T L+D
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFET---HESDVNSVRYYPSGD-AFASGSDDATCRLYD 268
Query: 179 LR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 237
LR + ++ ++S ES V +S + A D ++VWD+ K G S
Sbjct: 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK-GSRVS------ 320
Query: 238 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
+LF GH ++S +P+ CS S D+ ++
Sbjct: 321 ----ILF---GHENRVSTLRVSPDGT-AFCSGSWDHTLR 351
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 165 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 222
LAT S+DKT+ ++++ KL + H+ +++V W+ P TILAS D ++ +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 223 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNI 274
E+G + +H H+A ++ W P+E P ++ + S+ +
Sbjct: 84 ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 30/136 (22%)
Query: 122 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS------------EYILATGS 169
+ D K+ + + + + + P +DAH VN S+ P + TG
Sbjct: 119 ASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177
Query: 170 ADKTVALW----DLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDL 223
AD V +W D + L+ + E H D + V WSP + LAS DR +W
Sbjct: 178 ADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW-- 234
Query: 224 SKIGEEQSTEDAEDGP 239
T+D E GP
Sbjct: 235 --------TQDNEQGP 242
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 115 HESLFGSVADDQKLMIWDTRS-----HNVSKPSH---TVDAHTAEVNCLSFNPYSEYILA 166
H + GS++ + ++ +RS H+V H T+ H+ EV L + P + LA
Sbjct: 108 HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LA 166
Query: 167 TGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVW 221
+G D V +W + + L +F H+ + V W P +LA+ G +DR + +W
Sbjct: 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226
Query: 222 DLSKIGEEQSTEDA 235
++ G S DA
Sbjct: 227 NVCS-GACLSAVDA 239
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 127 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL 186
++ +WD + K + +H+A V LS+N YIL++GS + D+R + +
Sbjct: 90 EVQLWDVQQQ---KRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHV 143
Query: 187 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
+ H E+ ++W+P LAS G D ++VW
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 177
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
G D+ + IW+ S VDAH+ + L Y E I G A + +W
Sbjct: 215 GGGTSDRHIRIWNVCSGACLS---AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 271
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
+ K+ + H + + SP T+ AS+ D L +W
Sbjct: 272 PTMA-KVAELKGHTSRVLSLTMSPDGATV-ASAAADETLRLW 311
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 115 HESLFGSVADDQKLMIWDTRS-----HNVSKPSH---TVDAHTAEVNCLSFNPYSEYILA 166
H + GS++ + ++ +RS H+V H T+ H+ EV L + P + LA
Sbjct: 188 HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LA 246
Query: 167 TGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVW 221
+G D V +W + + L +F H+ + V W P +LA+ G +DR + +W
Sbjct: 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Query: 222 DL 223
++
Sbjct: 307 NV 308
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 109 VAWHLLHESLFGSVA-DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
VAW + E + +V ++ +WD + K + +H+A V LS+N YIL++
Sbjct: 153 VAW--IKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSWN---SYILSS 204
Query: 168 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
GS + D+R + + + H E+ ++W+P LAS G D ++VW
Sbjct: 205 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 257
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
G D+ + IW+ S VDAH+ + L Y E I G A + +W
Sbjct: 295 GGGTSDRHIRIWNVCSGACLS---AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 351
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ K+ + H + + SP T+ AS+ D L +W ++ + E +
Sbjct: 352 PTMA-KVAELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCFELDPARRREREKASA 409
Query: 240 PELLFIHGG 248
+ IH G
Sbjct: 410 AKSSLIHQG 418
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 115 HESLFGSVADDQKLMIWDTRS-----HNVSKPSH---TVDAHTAEVNCLSFNPYSEYILA 166
H + GS++ + ++ +RS H+V H T+ H+ EV L + P + LA
Sbjct: 199 HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LA 257
Query: 167 TGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVW 221
+G D V +W + + L +F H+ + V W P +LA+ G +DR + +W
Sbjct: 258 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Query: 222 DL 223
++
Sbjct: 318 NV 319
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 109 VAWHLLHESLFGSVA-DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
VAW + E + +V ++ +WD + K + +H+A V LS+N YIL++
Sbjct: 164 VAW--IKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSWN---SYILSS 215
Query: 168 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
GS + D+R + + + H E+ ++W+P LAS G D ++VW
Sbjct: 216 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 268
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
G D+ + IW+ S VDAH+ + L Y E I G A + +W
Sbjct: 306 GGGTSDRHIRIWNVCSGACLS---AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 362
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ K+ + H + + SP T+ AS+ D L +W ++ + E +
Sbjct: 363 PTMA-KVAELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCFELDPARRREREKASA 420
Query: 240 PELLFIHGG 248
+ IH G
Sbjct: 421 AKSSLIHQG 429
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 19/163 (11%)
Query: 123 ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 182
ADD+ + ++D+ + K + H V L + IL +GS D+TV +WD++
Sbjct: 139 ADDKMIRVYDSIN---KKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK- 192
Query: 183 KLKLHSFESHKDEIFQVQWSPH-NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP-- 239
H FE H + + + N + + D LHVW L K + D P
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 240 -------PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
P + + GH A + S + N ++ S S DN +
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHGN---IVVSGSYDNTL 292
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 19/108 (17%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 206
H A V +S + I+ +GS D T+ +WD+ +K L+ H D I+ + H
Sbjct: 268 GHMASVRTVSGHGN---IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYD-HER 322
Query: 207 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 254
S+ D + +WDL E+G EL++ GHTA +
Sbjct: 323 KRCISASMDTTIRIWDL------------ENG--ELMYTLQGHTALVG 356
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 19/163 (11%)
Query: 123 ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 182
ADD+ + ++D+ + K + H V L + IL +GS D+TV +WD++
Sbjct: 139 ADDKXIRVYDSIN---KKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK- 192
Query: 183 KLKLHSFESHKDEIFQVQWSPH-NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP-- 239
H FE H + + + N + + D LHVW L K + D P
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 240 -------PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
P + + GH A + S + N ++ S S DN +
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVSGHGN---IVVSGSYDNTL 292
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 206
H A V +S + I+ +GS D T+ +WD+ K L+ H D I+ + H
Sbjct: 268 GHXASVRTVSGHGN---IVVSGSYDNTLIVWDVAQXKC-LYILSGHTDRIYSTIYD-HER 322
Query: 207 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 254
S+ D + +WDL E+G EL + GHTA +
Sbjct: 323 KRCISASXDTTIRIWDL------------ENG--ELXYTLQGHTALVG 356
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 165 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 222
LAT S+DKT+ ++++ KL + H+ +++V W+ P TILAS D ++ +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 223 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNI 274
E+G + +H H+A ++ W P+E P ++ + S+ +
Sbjct: 86 ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 127
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 30/136 (22%)
Query: 122 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS------------EYILATGS 169
+ D K+ + + + + + P +DAH VN S+ P + TG
Sbjct: 121 ASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 179
Query: 170 ADKTVALW----DLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDL 223
AD V +W D + L+ + E H D + V WSP + LAS DR +W
Sbjct: 180 ADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW-- 236
Query: 224 SKIGEEQSTEDAEDGP 239
T+D E GP
Sbjct: 237 --------TQDNEQGP 244
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 116 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEV--NCLSFNPYSEYILATGSADKT 173
+S+F S ++D ++++WDTR KP+ + L+++P + G + T
Sbjct: 182 DSVFLSCSEDNRILLWDTR---CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238
Query: 174 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD--LSKIGEEQS 231
V+L D ++ L S H + + +SPH+ LAS D L V D LS++ Q+
Sbjct: 239 VSLVDTKSTSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA 297
Query: 232 TED 234
D
Sbjct: 298 HRD 300
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
+GS D + +WDL ++ L S+ +H ++ V SPH +++ S D R+ +WD
Sbjct: 144 SGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 168
+AWH +F ++ + + DT+S + S H+ V L F+P+S LA+
Sbjct: 220 LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVPFLASL 276
Query: 169 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 218
S D ++A+ D +L +L ++H+D + WSP N ++L + G D ++
Sbjct: 277 SEDCSLAVLD-SSLS-ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQV 324
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D + +WD V + AH A+V C++ +P+ + + + S D + LWD R
Sbjct: 144 SGSKDICIKVWDLAQQVVLS---SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Query: 181 NLK 183
K
Sbjct: 201 CPK 203
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSH------NVSKPSHTVDAHTAEVNCLSFNPYSE 162
+AW+ +F S IWD ++ + + P+ + +++ + ++P +
Sbjct: 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQ---QLSVVEWHPKNS 227
Query: 163 YILATGSA---DKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRL 218
+AT + D ++ +WDLRN L + + H+ I + W +E +L SSG D +
Sbjct: 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287
Query: 219 HVWD 222
+W+
Sbjct: 288 LLWN 291
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE--------SHKDEIFQV 199
H++ V + FN + +LA+G + + +WD+ ++ S DE+ +
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171
Query: 200 QWSPHNETILASSGTDRRLHVWDL 223
W+ + AS+G+ +WDL
Sbjct: 172 AWNQSLAHVFASAGSSNFASIWDL 195
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 186 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 231
+ F +H + V+++ + +LAS G + + +WD++K E S
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS 151
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 165 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 222
+AT S+DKT+ ++++ KL + H+ +++V W+ P TILAS D ++ +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 223 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNI 274
E+G + +H H+A ++ W P+E P ++ + S+ +
Sbjct: 84 ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV 125
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 30/136 (22%)
Query: 122 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS------------EYILATGS 169
+ D K+ + + + + + P +DAH VN S+ P + TG
Sbjct: 119 ASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177
Query: 170 ADKTVALW----DLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDL 223
AD V +W D + L+ + E H D + V WSP + +AS DR +W
Sbjct: 178 ADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW-- 234
Query: 224 SKIGEEQSTEDAEDGP 239
T+D E GP
Sbjct: 235 --------TQDNEQGP 242
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 165 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 222
LAT S+DKT+ ++++ KL + H+ +++V W+ P TILAS D ++ +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 223 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNI 274
E+G + +H H+A ++ W P+E P ++ + S+ +
Sbjct: 84 ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 30/136 (22%)
Query: 122 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS------------EYILATGS 169
+ D K+ + + + + + P +DAH VN S+ P + TG
Sbjct: 119 ASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177
Query: 170 ADKTVALW----DLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDL 223
AD V +W D + L+ + E H D + V WSP + LAS DR +W
Sbjct: 178 ADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW-- 234
Query: 224 SKIGEEQSTEDAEDGP 239
T+D E GP
Sbjct: 235 --------TQDNEQGP 242
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 225
+G D +V +WDL K L S+ +H E+ V P +TI S G D R+ +WD K
Sbjct: 156 SGGKDFSVKVWDLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S D + +WD V K + +AH++EVNC++ P + I + D + LWD R
Sbjct: 156 SGGKDFSVKVWDLSQKAVLK---SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Query: 181 NLKLKLHSFESHKDEI-FQVQWSPHNETILA 210
K D I V W P + A
Sbjct: 213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 116 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEV--NCLSFNPYSEYILATGSADKT 173
+++F S +D ++++WDTR KP+ +D ++ ++++P + A G
Sbjct: 194 DTIFLSCGEDGRILLWDTRK---PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN 250
Query: 174 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
V+L +++N + H I + +S H+ LAS D + V D
Sbjct: 251 VSLVNIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 31/154 (20%)
Query: 81 ISCILNISILFFEIIFTQNFPFPLSRQD----------VAWHLLHESLFGSVADDQKLMI 130
+SC + IL ++ P P +R D V WH + F + + +
Sbjct: 198 LSCGEDGRILLWDT----RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253
Query: 131 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD------LRNLKL 184
+ ++ + ++ S H+ + L+++ +S LA+ S D TVA+ D R+L
Sbjct: 254 VNIKNPDSAQTSAV---HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-- 308
Query: 185 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 218
SH+D + V WSP + + + G D ++
Sbjct: 309 ------SHRDFVTGVAWSPLDHSKFTTVGWDHKV 336
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHN 205
H +V ++ NP ++ LAT S D+TV +WDLR ++ K S H+ + +SP
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 206 ETILAS 211
+L +
Sbjct: 310 ARLLTT 315
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 45/180 (25%)
Query: 95 IFTQNFPFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVN 153
I + PF +AWH H S + +M+W+ + KP+ +
Sbjct: 112 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSIT 169
Query: 154 CLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS------------------------- 188
L FNP + S + T L D + L++ +
Sbjct: 170 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD 229
Query: 189 -----------------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 231
HK ++ V +P + LA++ D+ + +WDL ++ + S
Sbjct: 230 NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS 289
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHN 205
H +V ++ NP ++ LAT S D+TV +WDLR ++ K S H+ + +SP
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 206 ETILAS 211
+L +
Sbjct: 309 ARLLTT 314
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 45/180 (25%)
Query: 95 IFTQNFPFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVN 153
I + PF +AWH H S + +M+W+ + KP+ +
Sbjct: 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSIT 168
Query: 154 CLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS------------------------- 188
L FNP + S + T L D + L++ +
Sbjct: 169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD 228
Query: 189 -----------------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 231
HK ++ V +P + LA++ D+ + +WDL ++ + S
Sbjct: 229 NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS 288
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHN 205
H +V ++ NP ++ LAT S D+TV +WDLR ++ K S H+ + +SP
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 206 ETILAS 211
+L +
Sbjct: 309 ARLLTT 314
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 45/180 (25%)
Query: 95 IFTQNFPFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVN 153
I + PF +AWH H S + +M+W+ + KP+ +
Sbjct: 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSIT 168
Query: 154 CLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS------------------------- 188
L FNP + S + T L D + L++ +
Sbjct: 169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD 228
Query: 189 -----------------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 231
HK ++ V +P + LA++ D+ + +WDL ++ + S
Sbjct: 229 NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS 288
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 166 ATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDL 223
AT S+DKT+ ++++ KL + H+ +++V W+ P TILAS D ++ +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWK- 83
Query: 224 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 262
E+G + +H H+A ++ W P+E
Sbjct: 84 -----------EENGRWSQIAVHAVHSASVNSVQWAPHE 111
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 36/139 (25%)
Query: 122 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS------------EYILATGS 169
+ D K+ + + + + + P +DAH VN S+ P + TG
Sbjct: 119 ASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177
Query: 170 ADKTVALW----DLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-----ASSGTDRRLHV 220
AD V +W D + L+ + E H D + V WSP T+L AS DR +
Sbjct: 178 ADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSP---TVLLRSYXASVSQDRTCII 233
Query: 221 WDLSKIGEEQSTEDAEDGP 239
W T+D E GP
Sbjct: 234 W----------TQDNEQGP 242
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
LF S A D +WD R T H +++N + F P ATGS D T L+
Sbjct: 209 LFVSGACDASAKLWDVRE---GMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLF 264
Query: 178 DLR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 225
DLR + +L +S ++ I V +S +LA D +VWD K
Sbjct: 265 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALK 312
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
LF S A D +WD R T H +++N + F P ATGS D T L+
Sbjct: 198 LFVSGACDASAKLWDVRE---GMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLF 253
Query: 178 DLR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 225
DLR + +L +S ++ I V +S +LA D +VWD K
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALK 301
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
LF S A D +WD R T H +++N + F P ATGS D T L+
Sbjct: 198 LFVSGACDASAKLWDVRE---GMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLF 253
Query: 178 DLR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 225
DLR + +L +S ++ I V +S +LA D +VWD K
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALK 301
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
LF S A D +WD R T H +++N + F P ATGS D T L+
Sbjct: 198 LFVSGACDASAKLWDVRE---GMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLF 253
Query: 178 DLR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 225
DLR + +L +S ++ I V +S +LA D +VWD K
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALK 301
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
LF S A D +WD R T H +++N + F P ATGS D T L+
Sbjct: 198 LFVSGACDASAKLWDVRE---GMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLF 253
Query: 178 DLR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 225
DLR + +L +S ++ I V +S +LA D +VWD K
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALK 301
>pdb|2KHN|A Chain A, Nmr Solution Structure Of The Eh 1 Domain From Human
Intersectin-1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W++T E+R + QFH+L+ P I+G AR FF S LP L +IW
Sbjct: 25 WAITVEERAKHDQQFHSLK-------PISGFITGDQARNFFFQSGLPQPVLAQIW 72
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D L +W+ ++ + + HT +V ++F+P + I+ +G D + +W+++ +
Sbjct: 88 DHSLRLWNLQN---GQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRDNALRVWNVKGECM 143
Query: 185 KLHSFESHKDEIFQVQWSPH-NETILASSGTDRRLHVWDLS 224
S +H D + V++SP + ++ S G D + VWDL+
Sbjct: 144 HTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
>pdb|3FIA|A Chain A, Crystal Structure Of The Eh 1 Domain From Human
Intersectin- 1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W++T E+R + QFH+L+ P I+G AR FF S LP L +IW
Sbjct: 25 WAITVEERAKHDQQFHSLK-------PISGFITGDQARNFFFQSGLPQPVLAQIW 72
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 160 YSEYILATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPHNETILASSGTDR 216
+S+ ILATGS D+ + L ++ L +HK I V W PH ++LA+ D
Sbjct: 22 FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDS 80
Query: 217 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ +W +E+S + + +LL I GH ++ +W+ N+ + + + S D
Sbjct: 81 TVSIW-----AKEESADRTFE--MDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDK 129
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHT-----VDAHTAEVNCLSFNPYS 161
+ VAW H SL + + D + IW + + + ++ H EV ++++
Sbjct: 62 RSVAWRP-HTSLLAAGSFDSTVSIW-AKEESADRTFEMDLLAIIEGHENEVKGVAWSN-D 118
Query: 162 EYILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRL 218
Y LAT S DK+V +W+ + + + H ++ V W P +E +LASS D +
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTV 177
Query: 219 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI--SDFSWNPNEPWVICSVSEDNIMQ 276
+W +D +D E + + GH + SDF + +CS S+D+ ++
Sbjct: 178 RIW-----------KDYDD-DWECVAVLNGHEGTVWSSDFD-KTEGVFRLCSGSDDSTVR 224
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D + +WD + N HT+ H + + + + IL +G+AD TV +WD++ +
Sbjct: 298 DTSIRVWDVETGNCI---HTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQC 351
Query: 185 --KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 228
L H+ + +Q+ N+ + +S D + +WDL K GE
Sbjct: 352 LQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWDL-KTGE 393
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 114 LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 173
L +++ S D + IWD ++ + + H + V CL FN + + T S D T
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGT 383
Query: 174 VALWDLRN 181
V LWDL+
Sbjct: 384 VKLWDLKT 391
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S +DD L +W S K T+ HT V + + I+ +GS D+T+ +W+
Sbjct: 134 SGSDDNTLKVW---SAVTGKCLRTLVGHTGGV---WSSQMRDNIIISGSTDRTLKVWNAE 187
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+ +H+ H + + +E + S D L VWD+
Sbjct: 188 TGEC-IHTLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDI 226
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 152 VNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 211
+ CL F + +GS D T+ +W K L + H ++ Q + I+ S
Sbjct: 122 ITCLQFCGNR---IVSGSDDNTLKVWSAVTGKC-LRTLVGHTGGVWSSQ---MRDNIIIS 174
Query: 212 SGTDRRLHVWDLSKIGE 228
TDR L VW+ ++ GE
Sbjct: 175 GSTDRTLKVWN-AETGE 190
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPH 204
H +N L F+P +L + S D + LW+++ L E H+DE+ +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 205 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
E I+ S G D L +W ++ + +++ D P
Sbjct: 168 GEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 202
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPH 204
H +N L F+P +L + S D + LW+++ L E H+DE+ +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 205 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
E I+ S G D L +W ++ + +++ D P
Sbjct: 172 GEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 206
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPH 204
H +N L F+P +L + S D + LW+++ L E H+DE+ +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 205 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
E I+ S G D L +W ++ + +++ D P
Sbjct: 172 GEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 206
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPH 204
H +N L F+P +L + S D + LW+++ L E H+DE+ +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 205 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
E I+ S G D L +W ++ + +++ D P
Sbjct: 173 GEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 207
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPH 204
H +N L F+P +L + S D + LW+++ L E H+DE+ +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 205 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
E I+ S G D L +W ++ + +++ D P
Sbjct: 209 GEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 243
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRN------LKLKLHSFESHKDEIFQVQW 201
HTA+V C+S++P LATGS D +V +W++ + H+ S + V W
Sbjct: 535 HTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS----VNSVIW 589
Query: 202 SPHNETILASSGTDRRLHVWDL 223
NET + S+G D + W++
Sbjct: 590 --LNETTIVSAGQDSNIKFWNV 609
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Query: 128 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH 187
+ ++DT + N + +N + F P + + +GS D TVA+++ K K
Sbjct: 131 VFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-S 184
Query: 188 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVW---DLSKIG--EEQSTEDAEDGPPEL 242
+F H + V+++P + ++ AS+G D + ++ D +K G E+ S ++
Sbjct: 185 TFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA------ 237
Query: 243 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
H+ + +W+P+ I S S D ++
Sbjct: 238 ------HSGSVFGLTWSPDGT-KIASASADKTIK 264
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 117 SLFGSVADDQKLMIWD----TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK 172
SLF S D +++++ T++ S AH+ V L+++P I A+ SADK
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASASADK 261
Query: 173 TVALWDLRNLKLK 185
T+ +W++ LK++
Sbjct: 262 TIKIWNVATLKVE 274
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++ L
Sbjct: 86 DKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQCL 141
Query: 185 KLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 142 A--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-------- 191
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
FI GH + I+ + +P+ + + + IM
Sbjct: 192 ----FI--GHNSNINTLTASPDGTLIASAGKDGEIM 221
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 206
H + +N L+ +P I + G D + LW+L K +++ S +DE+F + +SP+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA-AKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 207 TILASSGTDRRL 218
+ A++ T ++
Sbjct: 251 WLAAATATGIKV 262
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 161 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
S I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +
Sbjct: 166 SVTIISAGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 221 WDLS 224
W+L+
Sbjct: 223 WNLA 226
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL----RNLKLKLHSFESHKDEIFQV 199
T++ H V L+ + +L + S DKT+ W L + + + SF+ H +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 200 QWSPHNETILASSGTDRRLHVWDLS 224
+ L++S D+ L +WD++
Sbjct: 72 TLTADGAYALSAS-WDKTLRLWDVA 95
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++ L
Sbjct: 80 DKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQCL 135
Query: 185 KLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 136 A--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-------- 185
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
FI GH + I+ + +P+ + + + IM
Sbjct: 186 ----FI--GHNSNINTLTASPDGTLIASAGKDGEIM 215
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 206
H + +N L+ +P I + G D + LW+L K +++ S +DE+F + +SP+
Sbjct: 188 GHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA-AKKAMYTL-SAQDEVFSLAFSPNRY 244
Query: 207 TILASSGTDRRL 218
+ A++ T ++
Sbjct: 245 WLAAATATGIKV 256
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 161 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
S I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +
Sbjct: 160 SVTIISAGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 216
Query: 221 WDLS 224
W+L+
Sbjct: 217 WNLA 220
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL----RNLKLKLHSFESHKDEIFQV 199
T++ H V L+ + +L + S DKT+ W L + + + SF+ H +
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 200 QWSPHNETILASSGTDRRLHVWDLS 224
+ L++S D+ L +WD++
Sbjct: 66 TLTADGAYALSAS-WDKTLRLWDVA 89
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++ L
Sbjct: 86 DKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQCL 141
Query: 185 KLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 142 A--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-------- 191
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
FI GH + I+ + +P+ + + + IM
Sbjct: 192 ----FI--GHNSNINTLTASPDGTLIASAGKDGEIM 221
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 206
H + +N L+ +P I + G D + LW+L K +++ S +DE+F + +SP+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA-AKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 207 TILASSGTDRRL 218
+ A++ T ++
Sbjct: 251 WLAAATATGIKV 262
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 161 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
S I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +
Sbjct: 166 SVTIISAGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 221 WDLS 224
W+L+
Sbjct: 223 WNLA 226
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL----RNLKLKLHSFESHKDEIFQV 199
T++ H V L+ + +L + S DKT+ W L + + + SF+ H +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 200 QWSPHNETILASSGTDRRLHVWDLS 224
+ L++S D+ L +WD++
Sbjct: 72 TLTADGAYALSAS-WDKTLRLWDVA 95
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++ L
Sbjct: 86 DKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQCL 141
Query: 185 KLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 142 A--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-------- 191
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
FI GH + I+ + +P+ + + + IM
Sbjct: 192 ----FI--GHNSNINTLTASPDGTLIASAGKDGEIM 221
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 206
H + +N L+ +P I + G D + LW+L K +++ S +DE+F + +SP+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA-AKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 207 TILASSGTDRRL 218
+ A++ T ++
Sbjct: 251 WLAAATATGIKV 262
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 161 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
S I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +
Sbjct: 166 SVTIISAGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 221 WDLS 224
W+L+
Sbjct: 223 WNLA 226
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL----RNLKLKLHSFESHKDEIFQV 199
T++ H V L+ + +L + S DKT+ W L + + + SF+ H +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 200 QWSPHNETILASSGTDRRLHVWDLS 224
+ L++S D+ L +WD++
Sbjct: 72 TLTADGAYALSAS-WDKTLRLWDVA 95
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++ L
Sbjct: 86 DKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQCL 141
Query: 185 KLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 142 A--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-------- 191
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
FI GH + I+ + +P+ + + + IM
Sbjct: 192 ----FI--GHNSNINTLTASPDGTLIASAGKDGEIM 221
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 206
H + +N L+ +P I + G D + LW+L K +++ S +DE+F + +SP+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA-AKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 207 TILASSGTDRRL 218
+ A++ T ++
Sbjct: 251 WLAAATATGIKV 262
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 161 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
S I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +
Sbjct: 166 SVTIISAGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 221 WDLS 224
W+L+
Sbjct: 223 WNLA 226
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL----RNLKLKLHSFESHKDEIFQV 199
T++ H V L+ + +L + S DKT+ W L + + + SF+ H +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 200 QWSPHNETILASSGTDRRLHVWDLS 224
+ L++S D+ L +WD++
Sbjct: 72 TLTADGAYALSAS-WDKTLRLWDVA 95
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 139 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 198
K +++D + ++++P +Y LA+G+ D + ++D+ KL LH+ E H I
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKL-LHTLEGHAMPIRS 211
Query: 199 VQWSPHNETILASSGTDRRLHVWDL 223
+ +SP ++ +L ++ D + ++D+
Sbjct: 212 LTFSPDSQ-LLVTASDDGYIKIYDV 235
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 165 LATGSADKTVALWDLRNLKLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+ TGS D V +W R+ +L L S E H+ + V S H I ASS D + +WDL
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS-HTLPIAASSSLDAHIRLWDL 109
Query: 224 SKIGEEQSTEDAED--------GPPELLFIHGGHTAKISDFS 257
G++ + DA P G H K++ F
Sbjct: 110 EN-GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
L + +DD + I+D + N++ T+ H + V ++F P + +++ S+DK+V +W
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAG---TLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVW 275
Query: 178 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
D+ + +H+F H+D+++ V+++ + I+ S G D+ +H++D
Sbjct: 276 DV-GTRTCVHTFFDHQDQVWGVKYNGNGSKIV-SVGDDQEIHIYD 318
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 127 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---------YSEYILATGSADKTVALW 177
K++++D +S V T+++N +S+ P E ++ATGS D + ++
Sbjct: 511 KILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568
Query: 178 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
++ + + +HKD + + W + L SSG D + W++
Sbjct: 569 SVKRPXKIIKALNAHKDGVNNLLW--ETPSTLVSSGADACIKRWNV 612
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS-EYILATGSADKTVALWDL 179
+V DD ++ + S T + V + F+P S E+++ GS D+ ++ +D
Sbjct: 178 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFDG 236
Query: 180 RN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
++ LK E + IF + W + A+ G D + VWD++
Sbjct: 237 KSGEFLKYIEDDQEPVQGGIFALSWLDSQK--FATVGADATIRVWDVT 282
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 127 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---------YSEYILATGSADKTVALW 177
K++++D +S V T+++N +S+ P E ++ATGS D + ++
Sbjct: 511 KILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568
Query: 178 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
++ + + +HKD + + W + L SSG D + W++
Sbjct: 569 SVKRPMKIIKALNAHKDGVNNLLW--ETPSTLVSSGADACIKRWNV 612
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS-EYILATGSADKTVALWDL 179
+V DD ++ + S T + V + F+P S E+++ GS D+ ++ +D
Sbjct: 178 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFDG 236
Query: 180 RN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
++ LK E + IF + W + A+ G D + VWD++
Sbjct: 237 KSGEFLKYIEDDQEPVQGGIFALSWLDSQK--FATVGADATIRVWDVT 282
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 26/154 (16%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++ L
Sbjct: 86 DKTLRLWDVAT---GETYQRFVGHKSDVXSVDIDKKASXII-SGSRDKTIKVWTIKGQCL 141
Query: 185 KLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 142 A--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD-------- 191
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
FI GH + I+ + +P+ +I S +D
Sbjct: 192 ----FI--GHNSNINTLTASPDGT-LIASAGKDG 218
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHN 205
H + +N L+ +P I + G D + LW NL K + S +DE+F + +SP+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK-DGEIXLW---NLAAKKAXYTLSAQDEVFSLAFSPNR 249
Query: 206 ETILASSGTDRRL 218
+ A++ T ++
Sbjct: 250 YWLAAATATGIKV 262
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 161 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
S I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +
Sbjct: 166 SVTIISAGN-DKXVKAWNLNQFQIE-ADFIGHNSNINTLTASP-DGTLIASAGKDGEIXL 222
Query: 221 WDLS 224
W+L+
Sbjct: 223 WNLA 226
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL----RNLKLKLHSFESHKDEIFQV 199
T++ H V L+ + +L + S DKT+ W L + + + SF+ H +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 200 QWSPHNETILASSGTDRRLHVWDLS 224
+ L++S D+ L +WD++
Sbjct: 72 TLTADGAYALSAS-WDKTLRLWDVA 95
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S D + +WD + + + HT +C+ + L TG D TV WDLR
Sbjct: 158 SCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLR 213
Query: 181 -NLKLKLHSFESHKDEIFQVQWSPHNE 206
+L+ H F S +IF + + P E
Sbjct: 214 EGRQLQQHDFTS---QIFSLGYCPTGE 237
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILATGSADKTV 174
S+FGS D +HN K + + CLSF+P + L GS V
Sbjct: 16 SMFGSATTD---------NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDV 66
Query: 175 ALWDLRNLKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
W++++ + + + H + V WS + +S D+ +WDLS
Sbjct: 67 RCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS-CDKTAKMWDLS 116
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 184 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 243
+++H + H ++ V W+P + I+ + GTDR +VW L P L+
Sbjct: 43 VQVHELKEHNGQVTGVDWAPDSNRIV-TCGTDRNAYVWTL----------KGRTWKPTLV 91
Query: 244 FIHGGHTAKISDFSWNPNE 262
+ A+ W PNE
Sbjct: 92 ILRINRAARC--VRWAPNE 108
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 184 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 243
+++H + H ++ + W+P + I+ + GTDR +VW L P L+
Sbjct: 43 VQVHELKEHNGQVTGIDWAPDSNRIV-TCGTDRNAYVWTL----------KGRTWKPTLV 91
Query: 244 FIHGGHTAKISDFSWNPNE 262
+ A+ W PNE
Sbjct: 92 ILRINRAARC--VRWAPNE 108
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN 181
T+D HT + + + +++Y + TGSAD ++ LWD+ N
Sbjct: 69 TLDGHTGTIWSIDVDCFTKYCV-TGSADYSIKLWDVSN 105
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 141 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 200
P +T+ H V LSF + ++ +GS DKT +W +L +++ ++H ++ +
Sbjct: 96 PLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEGSL---VYNLQAHNASVWDAK 149
Query: 201 WSPHNETILASSGTDRRLHVWDLSKI 226
+E ++ D+ + +W K+
Sbjct: 150 VVSFSENKFLTASADKTIKLWQNDKV 175
>pdb|2JXC|A Chain A, Structure Of The Eps15-Eh2 Stonin2 Complex
Length = 100
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 365 LNSIWSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
L S W++ E + Y F +L P +SG + NSKLPV L ++W
Sbjct: 3 LGSPWAVKPEDKAKYDAIFDSLS-------PVNGFLSGDKVKPVLLNSKLPVDILGRVW 54
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 188 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED------GPPE 241
S ++HK ++QV+ P N + ++G LH+W + ++S +D+E G
Sbjct: 254 SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY-EYPIQRSKKDSEGIEMGVAGSVS 312
Query: 242 LLFIHGGHTAKISDFSWNPNEPWV-ICS 268
LL T IS W+P++ + +CS
Sbjct: 313 LLQNVTLSTQPISSLDWSPDKRGLCVCS 340
>pdb|1PYF|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Apo)
pdb|1PZ0|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Holo)
Length = 312
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 376 REYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELR 420
RE KT F + H P + L+SG +A K+ E++ P +LR
Sbjct: 183 REAEKTFFPYTKEHNISFIPYFPLVSGLLAGKYTEDTTFPEGDLR 227
>pdb|1F8H|A Chain A, Structure Of The Second Eps15 Homology Domain Of Human
Eps15 In Complex With Ptgssstnpfr
Length = 95
Score = 28.9 bits (63), Expect = 6.2, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W++ E + Y F +L P +SG + NSKLPV L ++W
Sbjct: 2 WAVKPEDKAKYDAIFDSLS-------PVNGFLSGDKVKPVLLNSKLPVDILGRVW 49
>pdb|1FF1|A Chain A, Structure Of The Second Eps15 Homology Domain Of Human
Eps15 In Complex With Ptgssstnpfl
Length = 95
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W++ E + Y F +L P +SG + NSKLPV L ++W
Sbjct: 2 WAVKPEDKAKYDAIFDSLS-------PVNGFLSGDKVKPVLLNSKLPVDILGRVW 49
>pdb|1EH2|A Chain A, Structure Of The Second Eps15 Homology Domain Of Human
Eps15, Nmr, 20 Structures
Length = 106
Score = 28.5 bits (62), Expect = 6.8, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 367 SIWSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
S W++ E + Y F +L P +SG + NSKLPV L ++W
Sbjct: 5 SPWAVKPEDKAKYDAIFDSLS-------PVNGFLSGDKVKPVLLNSKLPVDILGRVW 54
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 207
HT +++ + +P+ + A A+KTVAL K++S D +QW H E
Sbjct: 102 HTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYS-----DPQPHIQWLKHIEV 156
Query: 208 ILASSGTDRRLHVWDLSKIGEEQSTEDAE 236
+ G D +V L G + ++ E
Sbjct: 157 NGSKIGPDNLPYVQILKTAGVNTTDKEME 185
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 207
HT +++ + +P+ + A A+KTVAL K++S D +QW H E
Sbjct: 101 HTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYS-----DPQPHIQWLKHIEV 155
Query: 208 ILASSGTDRRLHVWDLSKIGEEQSTEDAE 236
+ G D +V L G + ++ E
Sbjct: 156 NGSKIGPDNLPYVQILKTAGVNTTDKEME 184
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 207
HT +++ + +P+ + A A+KTVAL K++S D +QW H E
Sbjct: 101 HTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYS-----DPQPHIQWLKHIEV 155
Query: 208 ILASSGTDRRLHVWDLSKIGEEQSTEDAE 236
+ G D +V L G + ++ E
Sbjct: 156 NGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,233,406
Number of Sequences: 62578
Number of extensions: 532486
Number of successful extensions: 1804
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1323
Number of HSP's gapped (non-prelim): 348
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)