RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4571
(437 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 87.8 bits (218), Expect = 2e-19
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
VA+ + S + D + +WD R+ K T+ HT EVN ++F+P L +
Sbjct: 140 SVAFSPDGTFVASS-SQDGTIKLWDLRT---GKCVATLTGHTGEVNSVAFSP-DGEKLLS 194
Query: 168 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 227
S+D T+ LWDL K L + H++ + V +SP +LAS D + VWDL
Sbjct: 195 SSSDGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT-- 250
Query: 228 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
E + GHT ++ +W+P+ + S S D +
Sbjct: 251 ------------GECVQTLSGHTNSVTSLAWSPDGKRL-ASGSADGTI 285
Score = 86.6 bits (215), Expect = 4e-19
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
+DVA L S + D+ + +WD + + T+ HT+ V+ ++F+P IL+
Sbjct: 55 RDVAASADGTYLA-SGSSDKTIRLWDLET---GECVRTLTGHTSYVSSVAFSP-DGRILS 109
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
+ S DKT+ +WD+ K + H D + V +SP T +ASS D + +WDL
Sbjct: 110 SSSRDKTIKVWDVETGKCL-TTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTG 167
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
+ GHT +++ +++P+ ++ S S+ I
Sbjct: 168 KCVAT--------------LTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202
Score = 83.9 bits (208), Expect = 4e-18
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 141 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 200
T+ HT V C++F+P + LATGS D T+ +WDL +L L + + H + V
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVA 58
Query: 201 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 260
S LAS +D+ + +WDL E + GHT+ +S +++P
Sbjct: 59 ASADGTY-LASGSSDKTIRLWDLET--------------GECVRTLTGHTSYVSSVAFSP 103
Query: 261 NEPWVICSVSEDN 273
+ + S S D
Sbjct: 104 DGRILSSS-SRDK 115
Score = 72.0 bits (177), Expect = 5e-14
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 168
VA+ E L S + D + +WD + K T+ H VN ++F+P Y+LA+G
Sbjct: 183 VAFSPDGEKLLSS-SSDGTIKLWDLST---GKCLGTLRGHENGVNSVAFSP-DGYLLASG 237
Query: 169 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
S D T+ +WDLR + + + H + + + WSP + LAS D + +WD
Sbjct: 238 SEDGTIRVWDLRTGEC-VQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 72.4 bits (176), Expect = 1e-13
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 19/210 (9%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
+A+ L S + D + +WD + + + T+ H+ V SF+P LA+
Sbjct: 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSL-LAS 258
Query: 168 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 227
GS+D T+ LWDLR+ L + H + V +SP + +LAS +D + +WDL
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLET-- 315
Query: 228 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTK 287
G GH +S S++P+ ++ S+D ++ + +
Sbjct: 316 ----------GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW--DLRTGKP 363
Query: 288 TMRLDSIRSNGGISSTASPTASSTASESPT 317
L+ + +S + S+ S T
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGT 393
Score = 65.1 bits (157), Expect = 2e-11
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTVALWD 178
S + D + +WD + S H + V+ L+ + + +LA+ S D TV LWD
Sbjct: 82 SGSSDGTIKLWDLDNGEKLIKSLEGL-HDSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140
Query: 179 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 238
L + + E H + + + +SP + + + S D + +WDL
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT------------- 187
Query: 239 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEY 278
+ L GHT +S +++P+ +I S S D ++ +
Sbjct: 188 -GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226
Score = 58.9 bits (141), Expect = 2e-09
Identities = 51/272 (18%), Positives = 97/272 (35%), Gaps = 23/272 (8%)
Query: 132 DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES 191
D+ S + H + ++F+P E L +GS+D T+ LWDL N + + S E
Sbjct: 48 DSLVSLPDLSSLLLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEG 106
Query: 192 -HKDEIFQVQWSPH--NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 248
H + ++ S N +LASS D + +WDLS G+ T + G
Sbjct: 107 LHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE-------------G 153
Query: 249 HTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRLDSIRSNGGISSTASPTA 308
H+ ++ +++P+ + S D ++ + T T+ + + S
Sbjct: 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL 213
Query: 309 SSTASESPTPTNSVHEKNYWQGLVLFDILVCEEQRQLLGTEEESSDRHSSDNDTEDLNSI 368
++ S ++ + G +L L + + S S +D +
Sbjct: 214 IASGSSD----GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGT--IRL 267
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLI 400
W + H+ P L+
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299
Score = 52.0 bits (123), Expect = 4e-07
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 9/175 (5%)
Query: 116 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 175
L S + D + +WD + + S T+ H V+ LSF+P +++ GS D T+
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLS-SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354
Query: 176 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 235
LWDLR K + V +SP + +++S TD + +WDLS ++ +
Sbjct: 355 LWDLRTGKPLK--TLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411
Query: 236 EDGPPELLFIHGGH-----TAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSD 285
L F G ++ + W+ S S D + S S
Sbjct: 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 56.5 bits (136), Expect = 1e-08
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 141 PSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTVALWDLRN-------LKLKLHSFESH 192
P + HT+ + L FNP +SE ILA+GS D T+ +W++ + +K + H
Sbjct: 66 PVIKLKGHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124
Query: 193 KDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
K +I + W+P N I+ SSG D +++WD+
Sbjct: 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155
Score = 45.3 bits (107), Expect = 5e-05
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 182 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 241
+KLK H I +Q++P ILAS D + VW++ ++S ++ +D
Sbjct: 68 IKLK-----GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPH--NDESVKEIKDP--- 117
Query: 242 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
I GH KIS WNP +++CS D+
Sbjct: 118 -QCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148
Score = 42.2 bits (99), Expect = 4e-04
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHN------VSKPSHTVDAHTAEVNCLSFNPYS 161
D+ ++ + S ++D + +W+ HN + P + H +++ + +NP +
Sbjct: 79 DLQFNPCFSEILASGSEDLTIRVWEIP-HNDESVKEIKDPQCILKGHKKKISIIDWNPMN 137
Query: 162 EYILATGSADKTVALWDLRNLK 183
YI+ + D V +WD+ N K
Sbjct: 138 YYIMCSSGFDSFVNIWDIENEK 159
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs that
recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 48.0 bits (115), Expect = 3e-07
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 368 IWSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W+++ E + Y+ F +L +++ ++G A+ S LP T L KIW
Sbjct: 1 PWAISPEDKAKYEQIFRSLDKNQD------GTVTGAQAKPILLKSGLPQTLLAKIW 50
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 45.8 bits (109), Expect = 4e-07
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 140 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 178
K T+ HT V ++F+P LA+GS D TV +WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNL-LASGSDDGTVRVWD 39
Score = 39.6 bits (93), Expect = 7e-05
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 185 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
L + + H + V +SP + +LAS D + VWD
Sbjct: 3 LLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
Score = 28.9 bits (65), Expect = 0.39
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+LL GHT ++ +++P+ + S S+D
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNL-LASGSDDG 33
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 45.0 bits (107), Expect = 7e-07
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 140 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 178
+ T+ HT V ++F+P +Y LA+GS D T+ LWD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKY-LASGSDDGTIKLWD 40
Score = 39.6 bits (93), Expect = 6e-05
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 186 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
L + + H + V +SP LAS D + +WD
Sbjct: 5 LKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 239 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
ELL GHT ++ +++P+ ++ S S+D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLA-SGSDDG 34
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 47.8 bits (113), Expect = 8e-06
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
+L S +DD + +W S N T+ A + C+ F S LA GSAD V
Sbjct: 589 TLLASGSDDGSVKLW---SINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYY 644
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+DLRN KL L + H + V++ + + L SS TD L +WDLS
Sbjct: 645 YDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLS 690
Score = 33.1 bits (75), Expect = 0.34
Identities = 16/79 (20%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 206
A ++++ + +N Y + +A+ + + V +WD+ +L + + H+ ++ + +S +
Sbjct: 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADP 588
Query: 207 TILASSGTDRRLHVWDLSK 225
T+LAS D + +W +++
Sbjct: 589 TLLASGSDDGSVKLWSINQ 607
>gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit
C of CAF1 complex. The CAF-1 complex is a conserved
heterotrimeric protein complex that promotes histone H3
and H4 deposition onto newly synthesized DNA during
replication or DNA repair; specifically it facilitates
replication-dependent nucleosome assembly with the
major histone H3 (H3.1). This domain is an alpha helix
which sits just upstream of the WD40 seven-bladed
beta-propeller in the human RbAp46 protein. RbAp46
folds into the beta-propeller and binds histone H4 in a
groove formed between this N-terminal helix and an
extended loop inserted into blade six.
Length = 73
Score = 41.4 bits (98), Expect = 3e-05
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 56 NEEYKIWKKNTPFLYDLVVNN 76
NEEY++WKKN PFLYD++ +
Sbjct: 1 NEEYELWKKNDPFLYDMLHTH 21
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 41.1 bits (97), Expect = 4e-05
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 379 YKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
Y F +L LISG AR F S LP + L +IW
Sbjct: 1 YDQIFRSLDPDGD------GLISGDEARPFLGKSGLPRSVLAQIW 39
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 43.3 bits (102), Expect = 2e-04
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTR----SHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
DVA++ + ++D +M W + N+S P + HT +V +SF+P +
Sbjct: 80 DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN 139
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
+LA+ AD V +WD+ K + H D+I ++W+ ++L ++ D++L++ D
Sbjct: 140 VLASAGADMVVNVWDVERGKAV-EVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIID 196
Score = 39.1 bits (91), Expect = 0.004
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 155 LSFNPYSEYILATGSADKTVALWDL------RNLKLKLHSFESHKDEIFQVQWSPHNETI 208
++FNP+ L T S D T+ W + +N+ + + H ++ V + P +
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140
Query: 209 LASSGTDRRLHVWDLSK 225
LAS+G D ++VWD+ +
Sbjct: 141 LASAGADMVVNVWDVER 157
>gnl|CDD|116012 pfam07389, DUF1500, Protein of unknown function (DUF1500). This
family consists of several Orthopoxvirus specific
proteins of around 100 residues in length. The function
of this family is unknown.
Length = 100
Score = 33.8 bits (77), Expect = 0.029
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 32 HSIYRFYRLCVAEPFDDAVEERVINEEYKI--WKKNTPFLYDLVVNNYVANISCILNISI 89
H+IYR + C PFDD V R++ E + W +T L +++N + +++ + I
Sbjct: 37 HNIYRLFTRCAVIPFDDIV--RIMPNESCVKQWVIDT--LNGIIMNEH--DVAVCVGTGI 90
Query: 90 LFFEIIF 96
LF E+ F
Sbjct: 91 LFMEMFF 97
>gnl|CDD|215809 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.
Length = 454
Score = 33.1 bits (76), Expect = 0.33
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 123 ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
D + IWDT H P H +V C S++ Y E
Sbjct: 26 EDGKGPSIWDTFCHT---PGKVFGGHNGDVACDSYHRYKE 62
>gnl|CDD|234180 TIGR03356, BGL, beta-galactosidase.
Length = 426
Score = 32.6 bits (75), Expect = 0.37
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 120 GSVADDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
G+V +D + IWDT SH P D T +V C ++ Y E
Sbjct: 17 GAVNEDGRGPSIWDTFSH---TPGKVKDGDTGDVACDHYHRYEE 57
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 32.3 bits (73), Expect = 0.54
Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 13/131 (9%)
Query: 146 DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN-------LKLKLHSFESHKDEIFQ 198
+AH +N +SFN E +L+ + D + LW+L + +K H+ E + I
Sbjct: 169 NAHPYHINSISFNSDKETLLS--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITS 226
Query: 199 VQWSPHNETILASSGTDRRLHVWDL---SKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 255
++ P + S + + + DL + + + ++ F + ISD
Sbjct: 227 AEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEI-VSSISD 285
Query: 256 FSWNPNEPWVI 266
F ++ N +++
Sbjct: 286 FKFSDNGRYIL 296
>gnl|CDD|131121 TIGR02066, dsrB, sulfite reductase, dissimilatory-type beta
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction. It
remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers of
either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster prosthetic
center. Found in sulfate-reducing bacteria, these genes
are commonly located in an unidirectional gene cluster.
This model describes the beta subunit of sulfite
reductase [Central intermediary metabolism, Sulfur
metabolism].
Length = 341
Score = 29.0 bits (65), Expect = 4.6
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 407 KFFENSKLPVTELRKIWYPDSNKILSTWNVT 437
+FFE LP T+ + + ST+ +
Sbjct: 306 RFFELVGLPFTQHHIDDWRIAPYFYSTFRAS 336
>gnl|CDD|218697 pfam05694, SBP56, 56kDa selenium binding protein (SBP56). This
family consists of several eukaryotic selenium binding
proteins as well as three sequences from archaea. The
exact function of this protein is unknown although it is
thought that SBP56 participates in late stages of
intra-Golgi protein transport. The Lotus japonicus
homologue of SBP56, LjSBP is thought to have more than
one physiological role and can be implicated in
controlling the oxidation/reduction status of target
proteins, in vesicular Golgi transport.
Length = 461
Score = 28.4 bits (64), Expect = 9.7
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 216 RRLHVWDLSKIGEEQSTEDAEDG--PPELLFIH 246
RLH WDL + Q+ + E+G P E+ F+H
Sbjct: 222 HRLHFWDLRRRKHVQTIDLGEEGQMPLEVRFLH 254
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.398
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,706,397
Number of extensions: 2014721
Number of successful extensions: 1772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1706
Number of HSP's successfully gapped: 42
Length of query: 437
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 337
Effective length of database: 6,502,202
Effective search space: 2191242074
Effective search space used: 2191242074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)