RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4571
(437 letters)
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 277 bits (710), Expect = 2e-89
Identities = 164/169 (97%), Positives = 168/169 (99%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
DVAWHLLHESLFGSVADDQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILAT
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 168 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 227
GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 228 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
Score = 129 bits (327), Expect = 1e-33
Identities = 74/275 (26%), Positives = 110/275 (40%), Gaps = 65/275 (23%)
Query: 42 VAEPFDDAVEERVINEEYKIWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFP 101
AE FDDAVEERVINEEYKIWKKNTPFLYDLV+ + L L + +
Sbjct: 8 AAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHA-------LEWPSLTAQWLPDVTKQ 60
Query: 102 FPLSRQDVAWHLLHESLFGSVADDQK--LMIWDTRSHNVSKPSHTVDA------------ 147
+D + H L + G+ D++ L+I V PS
Sbjct: 61 ---DGKDYSVHRL---ILGTHTSDEQNHLLIAS-----VQLPSEDAQFDGSHYDNEKGEF 109
Query: 148 -----------------HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK----- 185
H EVN + P + ++AT + V ++D K
Sbjct: 110 GGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG 169
Query: 186 ----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 241
H+ E + + W+P+ L S+ D + +WD++ +E DA
Sbjct: 170 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA------ 223
Query: 242 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 276
I GHTA + D +W+ + SV++D +
Sbjct: 224 -KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Score = 111 bits (279), Expect = 5e-27
Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 24/193 (12%)
Query: 94 IIFTQNFPFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSH-------NVSKPSHTVD 146
I + + + + ++++D H +P +
Sbjct: 119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR 178
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK------LHSFESHKDEIFQVQ 200
H E LS+NP L + S D T+ LWD+ + + F H + V
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 201 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 260
W +E++ S D++L +WD + + HTA+++ S+NP
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTR-----------NNNTSKPSHTVDAHTAEVNCLSFNP 287
Query: 261 NEPWVICSVSEDN 273
+++ + S D
Sbjct: 288 YSEFILATGSADK 300
Score = 99.8 bits (249), Expect = 4e-23
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 168
++++ E + + + D+ + +WD R N+ H+ ++H E+ + ++P++E ILA+
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPHNETILASS 340
Query: 169 SADKTVALWDLRNLKLK-------------LHSFESHKDEIFQVQWSPHNETILASSGTD 215
D+ + +WDL + + L H +I W+P+ I+ S D
Sbjct: 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400
Query: 216 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 246
+ VW ++ E ++ + P L +
Sbjct: 401 NIMQVWQMA---ENVYNDEEPEIPASELETN 428
Score = 60.9 bits (148), Expect = 3e-10
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTR-----------SHNVSKPSHTVDAHTAEVNCLSF 157
V W +E++ S D++L +WD + HTA+++ S+
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386
Query: 158 NPYSEYILATGSADKTVALWDLR-------NLKLKLHSFESHK 193
NP +I+ + S D + +W + ++ E++
Sbjct: 387 NPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETNT 429
Score = 46.7 bits (111), Expect = 1e-05
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNC 154
D +W+ + SV++D + +W + + + A E N
Sbjct: 383 DFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETNT 429
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 103 bits (259), Expect = 2e-24
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 17/158 (10%)
Query: 124 DDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 182
D+ L ++ T +N H++ V + FN + +LA+G + + +WD+
Sbjct: 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146
Query: 183 K--------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 234
L S DE+ + W+ + AS+G+ +WDL K +E
Sbjct: 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL-KAKKEVIHLS 205
Query: 235 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 272
G ++S W+P + + +
Sbjct: 206 YTSPN-------SGIKQQLSVVEWHPKNSTRVATATGS 236
Score = 99.0 bits (247), Expect = 8e-23
Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 23/229 (10%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVS---KPSHTVDAHTAEVNCLSFNPYSEYIL 165
+AW+ +F S IWD ++ + +++ + ++P + +
Sbjct: 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230
Query: 166 ATGSA---DKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
AT + D ++ +WDLRN L + + H+ I + W +E +L SSG D + +W
Sbjct: 231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
Query: 222 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDS 281
+ E+ S + P P + S DN ++ +
Sbjct: 291 NPES-AEQLSQFP-------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQ--T 334
Query: 282 TDSDTKTMRLDSIRSNGGISSTASPTASSTASESPTPTNSVHEKNYWQG 330
+ T T+ + S T S P+ + W G
Sbjct: 335 LQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383
Score = 96.3 bits (240), Expect = 6e-22
Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 26/179 (14%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDT------RSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
V ++ +++ S ++ ++ IWD S+ + EV L++N
Sbjct: 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLA 178
Query: 163 YILATGSADKTVALWDLRNLKLKLH-----SFESHKDEIFQVQWSPHNETILAS---SGT 214
++ A+ + ++WDL+ K +H K ++ V+W P N T +A+ S
Sbjct: 179 HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238
Query: 215 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
D + +WDL + L ++ GH I W + ++ S DN
Sbjct: 239 DPSILIWDL------------RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Score = 69.7 bits (171), Expect = 4e-13
Identities = 21/156 (13%), Positives = 53/156 (33%), Gaps = 22/156 (14%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
G+ + + + S+ + +H +S + A S D ++ LW L
Sbjct: 1 GA--MGSMVKLAE-----FSRTATFAWSHDKIPLLVSGTVSGT-VDANFSTDSSLELWSL 52
Query: 180 --RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 237
+ + + S + + WS +N I+A + + L ++ ++
Sbjct: 53 LAADSEKPIASL-QVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNAI------- 103
Query: 238 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ H++ + +N + V+ S +
Sbjct: 104 ---NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG 136
Score = 27.7 bits (62), Expect = 9.4
Identities = 8/71 (11%), Positives = 18/71 (25%), Gaps = 20/71 (28%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
+ LF + D K+ + + ++T+D T
Sbjct: 310 KTKFAPEAPDLFACASFDNKIEVQT-----LQNLTNTLDEQE---------------TET 349
Query: 168 GSADKTVALWD 178
+ W+
Sbjct: 350 KQQESETDFWN 360
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 96.9 bits (242), Expect = 3e-22
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILA 166
V W+ +F S + D+ L +WDT + + + + V +P S ++A
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNT---LQTADVFN-FEETVYSHHMSPVSTKHCLVA 160
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
G+ V L DL++ H + H+ EI V WSP + ILA++ D R+ +WD+ +
Sbjct: 161 VGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219
Query: 227 GEEQSTEDAEDGPPE--LLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
T D +G + + H K++ + + ++ +V DN
Sbjct: 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL-TVGTDN 267
Score = 84.2 bits (209), Expect = 7e-18
Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 29/165 (17%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN-- 181
K+ + D +S SH + H E+ +S++P +YILAT SAD V LWD+R
Sbjct: 164 RGPKVQLCDLKSG---SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
Query: 182 -------------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 228
+ + +H ++ + ++ + L + GTD R+ +W+ S GE
Sbjct: 221 GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSN-GE 278
Query: 229 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
G + V +
Sbjct: 279 NTLV---NYGKV--CNNSKKGLKFTVSCGCSSE----FVFVPYGS 314
Score = 81.9 bits (203), Expect = 4e-17
Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 32/167 (19%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ + +K H +N L P + +G +D + L+DL
Sbjct: 18 LRRAESTRRVLGLEL---NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLE 74
Query: 181 NLKLK------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 228
N + + H+ + VQW PH+ + SS D+ L VWD + +
Sbjct: 75 NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-LQ 133
Query: 229 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWVICSVSEDN 273
+ +P + ++ +
Sbjct: 134 TADVF--------------NFEETVYSHHMSPVSTKHCLVAVGTRGP 166
Score = 73.4 bits (181), Expect = 2e-14
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
V + ++ S + + H V+C F + + +GS D + W
Sbjct: 309 FVPYGSTIAVYTVYS---GEQITMLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWVPS 364
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
+ + + Q +P E +SS + W
Sbjct: 365 LYE----PVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWS 402
Score = 69.6 bits (171), Expect = 4e-13
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Query: 165 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
L A+ T + L K H I + P + S G+D + ++DL
Sbjct: 16 LRLRRAESTRRVLGLELNKD-RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLE 74
Query: 225 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
QS + H + W P++ + S S D
Sbjct: 75 N-SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122
Score = 64.6 bits (158), Expect = 1e-11
Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 5/106 (4%)
Query: 121 SVADDQKLMIWDTRS-HNVSKPS-HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 178
+V D ++ +W++ + N + + S T+A++
Sbjct: 262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF-VFVPYGSTIAVYT 320
Query: 179 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+ + + + + H + + N L S D + W S
Sbjct: 321 VYSGEQ-ITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPS 364
Score = 40.3 bits (95), Expect = 0.001
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 10/60 (16%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK-TVALWD 178
GS D ++ W + V NP E + S ++ + W
Sbjct: 352 GS--RDCNILAWVPSLY------EPVPDDDETTTKSQLNPAFEDA-WSSSDEEGGTSAWS 402
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 97.2 bits (242), Expect = 1e-21
Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI-LATGSADKTVALWDL 179
+ + D+K+ IWD+ + K HT D H+ +VNC F S ++ LATGS D + LWDL
Sbjct: 674 TCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ ++ H + + ++SP ++ +LAS D L +WD+ E+ + + +
Sbjct: 731 NQKEC-RNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRS-ANERKSINVKRFF 787
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
+ SW+ + +I +++ +
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKII-VAAKNKV 821
Score = 85.3 bits (211), Expect = 9e-18
Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 11/141 (7%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D + +W+ + + H V + + + ++ SADKT +W
Sbjct: 1060 SWSFDGTVKVWNVIT---GRIERDFTCHQGTVLSCAISSDATKF-SSTSADKTAKIWSFD 1115
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
L LH + H + +S + +LA+ + + +W++S G+ +
Sbjct: 1116 LLSP-LHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSD-GQLLHSCAPISVEE 1172
Query: 241 ELLFIHGGHTAKISDFSWNPN 261
H ++D ++P+
Sbjct: 1173 GT----ATHGGWVTDVCFSPD 1189
Score = 84.1 bits (208), Expect = 2e-17
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 24/141 (17%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+V + + L + ++ A+V+C +P+ EY+ A G D + + +L
Sbjct: 939 AVDNIRGLQLIAGKTG------QIDYLPEAQVSCCCLSPHLEYV-AFGDEDGAIKIIELP 991
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
N ++ S HK + +Q++ + L SS D + VW + + G
Sbjct: 992 NNRV-FSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVW------------NWQTGDY 1037
Query: 241 ELLFIHGGHTAKISDFSWNPN 261
L H + DF +
Sbjct: 1038 VFLQ---AHQETVKDFRLLQD 1055
Score = 82.2 bits (203), Expect = 9e-17
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 21/197 (10%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S D+ L ++ + + + AH EV C +F+ YI AT SADK V +WD
Sbjct: 632 SCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWDSA 687
Query: 181 NLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
KL +H+++ H +++ ++ N +LA+ D L +WDL++ E ++T
Sbjct: 688 TGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNT------- 738
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRLDSIRSNGG 299
+F GHT ++ ++P++ + S S D ++ + + ++ K++ + +
Sbjct: 739 ---MF---GHTNSVNHCRFSPDDELLA-SCSADGTLRLWDVRSANERKSINVKRFFLSSE 791
Query: 300 ISSTASPTASSTASESP 316
S S
Sbjct: 792 DPPEDVEVIVKCCSWSA 808
Score = 76.4 bits (188), Expect = 6e-15
Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 23/153 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S ++D + +W+ ++ + AH V S L + S D TV +W++
Sbjct: 1020 SSSEDSVIQVWNWQT----GDYVFLQAHQETVKDFRLLQDSR--LLSWSFDGTVKVWNVI 1073
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
++ F H+ + S + T +S+ D+ +W +
Sbjct: 1074 TGRI-ERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIW------------SFDLL-- 1117
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
L GH + +++ + + + ++
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLA-TGDDNG 1149
Score = 74.9 bits (184), Expect = 2e-14
Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 28/163 (17%)
Query: 121 SVADDQKLMIWDTRS----------HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 170
S + D L +WD RS + V C S++ + I +
Sbjct: 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI-IVAAK 818
Query: 171 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 230
+K + L+D+ L H I +SP++ + + + +W
Sbjct: 819 NKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA-VIALSQYCVELW--------- 867
Query: 231 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ + + GH + + ++P+ + + S+D
Sbjct: 868 ---NIDSR--LKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQ 904
Score = 74.9 bits (184), Expect = 2e-14
Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 183
+ + W + + V HT V F+ + I A+ ADKT+ ++ +
Sbjct: 590 TGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGE 648
Query: 184 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 243
L ++H+DE+ +S + I A+ D+++ +W D+ G +L+
Sbjct: 649 K-LLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIW------------DSATG--KLV 692
Query: 244 FIHGGHTAKISDFSWNPN-EPWVICSVSEDN 273
+ H+ +++ + ++ + S D
Sbjct: 693 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723
Score = 74.5 bits (183), Expect = 3e-14
Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 30/162 (18%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D+ IW P H + H V C +F+ + ATG + + +W++
Sbjct: 1102 STSADKTAKIWSFDL---LSPLHELKGHNGCVRCSAFSLDGILL-ATGDDNGEIRIWNVS 1157
Query: 181 NLKL--------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
+ +L +H + V +SP ++T++++ G L W+++ G+ T
Sbjct: 1158 DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY---LKWWNVAT-GDSSQT 1213
Query: 233 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
+ + +P+ + +V I
Sbjct: 1214 ---------FY----TNGTNLKKIHVSPDFRTYV-TVDNLGI 1241
Score = 71.4 bits (175), Expect = 2e-13
Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 26/153 (16%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ +DDQ + +W+ K + + F + + + L +
Sbjct: 899 TASDDQTIRVWE-----TKKVCKNSAIVLKQEIDVVFQENETMV-LAVDNIRGLQLIAGK 952
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
++ + ++ SPH E + A D + + +L S+
Sbjct: 953 TGQI----DYLPEAQVSCCCLSPHLEYV-AFGDEDGAIKIIELPN-NRVFSSGV------ 1000
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
GH + + + +I S SED+
Sbjct: 1001 -------GHKKAVRHIQFTADGKTLI-SSSEDS 1025
Score = 71.4 bits (175), Expect = 2e-13
Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 121 SVADDQKLMIWDT------RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTV 174
+ D+ ++ IW+ S H V + F+P S+ ++ SA +
Sbjct: 1144 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV---SAGGYL 1200
Query: 175 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 225
W++ +F ++ + ++ SP + + L++ + +
Sbjct: 1201 KWWNVATGDS-SQTFYTNGTNLKKIHVSP-DFRTYVTVDNLGILYILQVLE 1249
Score = 46.7 bits (111), Expect = 1e-05
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 14/75 (18%)
Query: 115 HESLFGSVA---DDQKLM-------IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 164
H V D + L+ W+ + S T + + + +P
Sbjct: 1177 HGGWVTDVCFSPDSKTLVSAGGYLKWWNVATG---DSSQTFYTNGTNLKKIHVSPDFRTY 1233
Query: 165 LATGSADKTVALWDL 179
T + + +
Sbjct: 1234 -VTVDNLGILYILQV 1247
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 94.0 bits (234), Expect = 2e-21
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 15/161 (9%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY--ILATGSADKTVALWDLRN 181
D+ + ++D R+ + V L F+ L S + ++D+R
Sbjct: 188 DNGDIKLFDLRNMAL----RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243
Query: 182 LK----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED--- 234
S ++HK ++QV+ P N + ++G LH+W + +
Sbjct: 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303
Query: 235 --AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
G LL T IS W+P++ + S D
Sbjct: 304 EMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344
Score = 79.3 bits (196), Expect = 2e-16
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 20/125 (16%)
Query: 121 SVADDQKLMIWDTRSHNVSKP--SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 178
+ + + K ++D R+ + +K S + AH + V + P + + T + LW
Sbjct: 229 ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288
Query: 179 LRNLKLK------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
+ L + I + WSP + S D+ + V
Sbjct: 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348
Query: 221 WDLSK 225
++K
Sbjct: 349 LIVTK 353
Score = 72.0 bits (177), Expect = 5e-14
Identities = 22/161 (13%), Positives = 55/161 (34%), Gaps = 20/161 (12%)
Query: 121 SVADDQKLMIWDTRSHNVSKPS------HTVDAHTAEVNCLSFNPYSEYILATGSADKTV 174
+ + D + +WD R + + ++N E ++ G + +
Sbjct: 134 TGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDI 192
Query: 175 ALWDLRNLKLKLHSFESHKDEIFQVQWSP--HNETILASSGTDRRLHVWDLSKIGEEQST 232
L+DLRN+ L+ + K+ + +++ + L ++ + + HV+D+ T
Sbjct: 193 KLFDLRNMALR--WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM-------RT 243
Query: 233 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ G H + + P + +
Sbjct: 244 QHPTKG--FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG 282
Score = 70.1 bits (172), Expect = 2e-13
Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 21/160 (13%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILATGSADKTVALWDLRN 181
+ +++ + ++ + C +F S + LATG + +W+L
Sbjct: 42 GTGVIQLYEIQHGDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA 99
Query: 182 LKLKLHSFESHKDEIFQVQW------SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 235
++ ++S + HK+ I + + + D + VWD + + + +
Sbjct: 100 PEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEP 158
Query: 236 EDGPPELLFIHGGHTAKISDFS--WNPNEPWVICSVSEDN 273
G F +N E +C+ ++
Sbjct: 159 VQG-------ENKRDCWTVAFGNAYNQEERV-VCAGYDNG 190
Score = 57.8 bits (140), Expect = 2e-09
Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 25/142 (17%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATG---SADKTVALWDLRNLKLKLHSFESHKDEIFQV 199
H V + P S + G + L+++++ LKL I
Sbjct: 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCG 71
Query: 200 Q---WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 256
S + LA+ LH+W+L + P ++ GH I+
Sbjct: 72 TFGATSL-QQRYLATGDFGGNLHIWNL-------------EAPEMPVYSVKGHKEIINAI 117
Query: 257 SWNPNEPW-----VICSVSEDN 273
I + S D
Sbjct: 118 DGIGGLGIGEGAPEIVTGSRDG 139
Score = 49.3 bits (118), Expect = 1e-06
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S D + + + S V T ++ L ++P + S D+TV + +
Sbjct: 296 SKKDSEGIEMGVAGS---VSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352
Query: 181 NL 182
L
Sbjct: 353 KL 354
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 94.3 bits (235), Expect = 2e-21
Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 26/182 (14%)
Query: 115 HESLFGSVA------------DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
+ + V +L++ H A+V FNP +
Sbjct: 162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG----HEIFKEKLHKAKVTHAEFNPRCD 217
Query: 163 YILATGSADKTVALWDLRNLKLK--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
+++AT S D TV LWDLRN+K K + H+ + ++P + T L ++ + V
Sbjct: 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277
Query: 221 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCD 280
+ + + L W+P ++ D+ +
Sbjct: 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKAT--------WHPMYDLIVAGRYPDDQLLLNDK 329
Query: 281 ST 282
T
Sbjct: 330 RT 331
Score = 92.0 bits (229), Expect = 1e-20
Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 18/166 (10%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 168
+ WH H + + +++WD N + + FN ++ L
Sbjct: 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVS 137
Query: 169 SADKTVALWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 227
S L D ++ +S V S + +LA+ + RL + L G
Sbjct: 138 SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD--G 194
Query: 228 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
E E H AK++ +NP W++ + S D
Sbjct: 195 HEIFKEK-------------LHKAKVTHAEFNPRCDWLMATSSVDA 227
Score = 81.6 bits (202), Expect = 4e-17
Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 17/150 (11%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-NLK 183
Q+ I +S K T V L ++P +A GS + LWD K
Sbjct: 52 LQEPFIRSLKS---YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK 108
Query: 184 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 243
D I ++++ N L S + D S ++
Sbjct: 109 TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG------------SVIQVF 156
Query: 244 FIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ + ++ +
Sbjct: 157 AKTDSWDYWYCCVDVSVS-RQMLATGDSTG 185
Score = 75.1 bits (185), Expect = 5e-15
Identities = 28/180 (15%), Positives = 50/180 (27%), Gaps = 28/180 (15%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 168
++ + L + + D + +WD R+ H VN FNP L T
Sbjct: 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT 269
Query: 169 SADKTVALWDLRNLKLKLHSFESHKDE------IFQVQWSPHNETILASSGT-------- 214
+ ++ + K H + W P + I+A
Sbjct: 270 DQRNEIRVYSSYDWS-KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLND 328
Query: 215 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
R + ++D + G IS ++P + S NI
Sbjct: 329 KRTIDIYDANS-GGLVHQ-----------LRDPNAAGIISLNKFSPTGDV-LASGMGFNI 375
Score = 46.2 bits (110), Expect = 1e-05
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 16/117 (13%)
Query: 121 SVADDQKLMIWDTRS-----------HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 169
+ ++ ++ + H + + A + L +
Sbjct: 268 TTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLN 327
Query: 170 ADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+T+ ++D + L +H I ++SP +LAS G + +W+
Sbjct: 328 DKRTIDIYDANSGGL-VHQLRDPNAAGIISLNKFSP-TGDVLAS-GMGFNILIWNRE 381
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 94.4 bits (235), Expect = 2e-21
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 19/156 (12%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL---- 179
L++ ++ V K V HTA V +++ P+++ ++A+GS D TV +W++
Sbjct: 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115
Query: 180 --RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 237
L+ + + E H + V W P + +L S+G D + VWD+ G T +
Sbjct: 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTLGPD- 173
Query: 238 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
H I W+ + IC+ D
Sbjct: 174 ----------VHPDTIYSVDWSRDGAL-ICTSCRDK 198
Score = 93.6 bits (233), Expect = 5e-21
Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWD----TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
D+AW ++++ S ++D +M+W+ + +P T++ HT V ++++P ++
Sbjct: 86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN 145
Query: 164 ILATGSADKTVALWDLRNLKLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
+L + D + +WD+ L + H D I+ V WS + ++ +S D+R+ V +
Sbjct: 146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIE 204
Score = 68.9 bits (169), Expect = 7e-13
Identities = 26/168 (15%), Positives = 61/168 (36%), Gaps = 17/168 (10%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 168
VAWH +++ S D +++WD + + + D H + + ++ I T
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALI-CTS 194
Query: 169 SADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETIL--ASSGTDRRLHVWDLSK 225
DK V + + R + H+ + + + S ++R++ +WD
Sbjct: 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254
Query: 226 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ E S ++ ++ + ++P+ V D+
Sbjct: 255 LEEPLSLQEL------------DTSSGVLLPFFDPDTNIVYLCGKGDS 290
Score = 64.7 bits (158), Expect = 1e-11
Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 42/215 (19%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS--FNPYSEYILATG---SAD 171
+L + D+++ + + R D + F IL TG ++
Sbjct: 189 ALICTSCRDKRVRVIEPRK---GTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSE 244
Query: 172 KTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 230
+ VALWD ++L+ L E + + P + D + +
Sbjct: 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF--------- 295
Query: 231 STEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTM 289
+ P L ++ + P V++ I + Y
Sbjct: 296 ---EITSEAPFLHYLSMFSSKESQRGMGYMPKR---GLEVNKCEIARFY------KLHER 343
Query: 290 RLDSI-----RSNGGISS-----TASPTASSTASE 314
+ + I R + TA P + TA E
Sbjct: 344 KCEPIAMTVPRKSDLFQEDLYPPTAGPDPALTAEE 378
Score = 42.8 bits (101), Expect = 2e-04
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
++++ +++S +P ++ + V L K G + P
Sbjct: 27 DVRVSQTTWDSGF-----CAVNPKFMALICEASGGGAFLVLPLGKTGR------VDKNVP 75
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ GHTA + D +W P+ VI S SED
Sbjct: 76 LVC----GHTAPVLDIAWCPHNDNVIASGSEDC 104
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 91.1 bits (227), Expect = 3e-20
Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 21/147 (14%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 183
+ + I+D S T+ H A V CLS+N + +L++GS + D+R
Sbjct: 154 GNGLVDIYDVES---QTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIAN 207
Query: 184 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 243
++ + + H E+ + W + LAS G D + +WD
Sbjct: 208 HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDAR--------------SSIPK 252
Query: 244 FIHGGHTAKISDFSWNPNEPWVICSVS 270
F H A + +W P + ++ +
Sbjct: 253 FTKTNHNAAVKAVAWCPWQSNLLATGG 279
Score = 74.6 bits (184), Expect = 8e-15
Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 21/153 (13%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT--GSADKTVALWDLRN 181
+D + IWD RS S P T H A V +++ P+ +LAT G+ DK + W+
Sbjct: 237 NDNVVQIWDARS---SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293
Query: 182 LKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+++ ++ ++ + WSPH++ I+++ G D L +W S G + +
Sbjct: 294 GAR-VNTVDAG-SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD------- 344
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
H ++ + +P+ + + + D
Sbjct: 345 -----IPAHDTRVLYSALSPDGRI-LSTAASDE 371
Score = 61.9 bits (151), Expect = 1e-10
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 109 VAW-----HLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
VAW +LL G D+++ W+ + +TVDA + +V L ++P+S+
Sbjct: 265 VAWCPWQSNLL---ATGGGTMDKQIHFWNAAT---GARVNTVDAGS-QVTSLIWSPHSKE 317
Query: 164 ILAT-GSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
I++T G D +++W + L K +H + SP + +++ +D L W
Sbjct: 318 IMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL-STAASDENLKFW 376
Query: 222 DL 223
+
Sbjct: 377 RV 378
Score = 61.1 bits (149), Expect = 2e-10
Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 21/137 (15%)
Query: 139 SKPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI 196
+ P +DA + + + ++A + ++ V +W+ + + + +
Sbjct: 79 TTPERVLDAPGIIDDYYLNLLDWSNLNVVA-VALERNVYVWNADSGSVSALAETDESTYV 137
Query: 197 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 256
V+WS + + L+ + + ++D+ + T GH A++
Sbjct: 138 ASVKWSH-DGSFLSVGLGNGLVDIYDVES-QTKLRT-------------MAGHQARVGCL 182
Query: 257 SWNPNEPWVICSVSEDN 273
SWN + V+ S S
Sbjct: 183 SWNRH---VLSSGSRSG 196
Score = 51.9 bits (125), Expect = 2e-07
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
S G D L IW S ++K + AH V + +P + +T ++D+ +
Sbjct: 320 STHGF--PDNNLSIWSYSSSGLTK-QVDIPAHDTRVLYSALSPDGRIL-STAASDENLKF 375
Query: 177 WDLRNLKLKLHSFESHKDEIFQV 199
W + + K +
Sbjct: 376 WRVYDGDHVKRPIPITKTPSSSI 398
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 90.9 bits (226), Expect = 9e-20
Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+DD ++ +++ + + +AH + ++ +P Y+ +GS D TV LW+
Sbjct: 72 VGSDDFRIRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKPYV-LSGSDDLTVKLWNWE 127
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
N +FE H+ + V ++P + + AS DR + VW L + T
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFT-------- 178
Query: 241 ELLFIHGGHTAKIS--DFSWNPNEPWVICSVSEDN 273
+ G ++ D+ P++P+ + + S+D
Sbjct: 179 ----LTTGQERGVNYVDYYPLPDKPY-MITASDDL 208
Score = 75.9 bits (187), Expect = 6e-15
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 19/150 (12%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 183
++ IW+ + ++ V F +I GS D + +++ +
Sbjct: 33 YSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWI-IVGSDDFRIRVFNYNTGE 88
Query: 184 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 243
K+ FE+H D I + P + + S D + +W+ L
Sbjct: 89 -KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWEN-NW------------ALE 133
Query: 244 FIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
GH + ++NP +P S D
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Score = 74.0 bits (182), Expect = 3e-14
Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 35/183 (19%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ +DD + IWD ++ T++ H + V+ F+P I +GS D T+ +W+
Sbjct: 203 TASDDLTIKIWDYQT---KSCVATLEGHMSNVSFAVFHPTLPII-ISGSEDGTLKIWNSS 258
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL----------------- 223
K+ + + + + P +SG D V L
Sbjct: 259 TYKV-EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVW 317
Query: 224 ----------SKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWVICSVSE 271
+ E+ E P L G + +PN +V V +
Sbjct: 318 SGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFV-TVVGD 376
Query: 272 DNI 274
Sbjct: 377 GEY 379
Score = 69.7 bits (171), Expect = 7e-13
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSE-YILA 166
VA++ S F S D+ + +W S P+ T+ VN + + P + +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQ---STPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
T S D T+ +WD + + + E H + + P I S D L +W+ S
Sbjct: 203 TASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLPII-ISGSEDGTLKIWNSST- 259
Query: 227 GEEQST 232
+ + T
Sbjct: 260 YKVEKT 265
Score = 65.9 bits (161), Expect = 1e-11
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 18/131 (13%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 202
T + V + F+P +E + T V +W+ + S + + + ++
Sbjct: 7 KTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVE-VRSIQVTETPVRAGKFI 64
Query: 203 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 262
I D R+ V+ + G E + H I + +P +
Sbjct: 65 ARKNWI-IVGSDDFRIRVF------------NYNTG--EKVVDFEAHPDYIRSIAVHPTK 109
Query: 263 PWVICSVSEDN 273
P+V+ S S+D
Sbjct: 110 PYVL-SGSDDL 119
Score = 35.1 bits (81), Expect = 0.049
Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 21/110 (19%)
Query: 116 ESLFG----SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD 171
+ LF V D + +D + +D + + ++ E + + +
Sbjct: 437 DRLFSGALLGVKSDGFVYFFDWDN---GTLVRRIDVN---AKDVIWSDNGELV-MIVNTN 489
Query: 172 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
L + +N I S G D V
Sbjct: 490 SNGDEASGYTLLFNKD----------AYLEAANNGNIDDSEGVDEAFDVL 529
Score = 32.7 bits (75), Expect = 0.29
Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 31/124 (25%)
Query: 182 LKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+KL + +F + D + + + P +L + R+ +W+ E +
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLY-SGRVEIWNYET-QVEVRSIQ------ 52
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRL--------D 292
+ + + W+I S+D ++ + + T D
Sbjct: 53 -------VTETPVRAGKFIARKNWII-VGSDDFRIRVF------NYNTGEKVVDFEAHPD 98
Query: 293 SIRS 296
IRS
Sbjct: 99 YIRS 102
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 90.3 bits (225), Expect = 1e-19
Identities = 25/154 (16%), Positives = 62/154 (40%), Gaps = 13/154 (8%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
++ ++ + + + +N + F P + + +GS D TVA+++
Sbjct: 121 VGEGRERFGHVFLFDTGT---SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
K +F H + V+++P + ++ AS+G D + +++ G + + +
Sbjct: 178 PPFKF-KSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNG-VDGTKTGVFEDDSLK 234
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
H+ + +W+P+ + S S D
Sbjct: 235 NV------AHSGSVFGLTWSPDGTKIA-SASADK 261
Score = 84.9 bits (211), Expect = 6e-18
Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 121 SVADDQKLMIWDTRS----HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
S D +++++ S AH+ V L+++P I A+ SADKT+ +
Sbjct: 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASASADKTIKI 265
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 236
W++ LK++ + E Q+ + + S + ++ +
Sbjct: 266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL-VSISANGFINFVNPEL----------- 313
Query: 237 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ + GH I+ S + + + S +
Sbjct: 314 ---GSIDQVRYGHNKAITALSSSADGKTLF-SADAEG 346
Score = 81.9 bits (203), Expect = 7e-17
Identities = 15/154 (9%), Positives = 44/154 (28%), Gaps = 18/154 (11%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S++ + + + H + LS + + + + A+ + WD+
Sbjct: 299 SISANGFINFVNPELG---SIDQVRYGHNKAITALSSSADGKTL-FSADAEGHINSWDIS 354
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+ H I ++ + + L + D L V G
Sbjct: 355 TGISNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVVP-----------AGGSGVD 401
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
+ +++ + + + + + +I
Sbjct: 402 SSKAVANKLSSQPLGLAVSADGDIAV-AACYKHI 434
Score = 81.5 bits (202), Expect = 9e-17
Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ +K++ + ++ +++ HTA+V C+S++P + + ATGS D +V +W++
Sbjct: 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMN 566
Query: 181 N-LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+ +H NET + S+G D + W++
Sbjct: 567 KPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP 610
Score = 79.9 bits (198), Expect = 3e-16
Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
A + + I+ K + ++ +C++ + +++ A G D V ++ L
Sbjct: 427 VAACYKHIAIYSH-----GKLTEVPISYN--SSCVALSNDKQFV-AVGGQDSKVHVYKLS 478
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG-P 239
+ H EI V +S N L ++ R++ + +
Sbjct: 479 GASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPY------------SVANNFE 525
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
HTAK++ SW+P+ + + S DN
Sbjct: 526 LAHTNSWTFHTAKVACVSWSPDNVRLA-TGSLDN 558
Score = 73.0 bits (180), Expect = 4e-14
Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 23/158 (14%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
+ + + + + H+ + +P Y A+G V +W
Sbjct: 34 QYCNGTSVYTVPVGSLTD------TEIYTEHSHQTTVAKTSPSGYYC-ASGDVHGNVRIW 86
Query: 178 DLRN-LKLKLHSFESHKDEIFQVQWSPHNETIL-ASSGTDRRLHVWDLSKIGEEQSTEDA 235
D + + + + W ++ I G +R HV+
Sbjct: 87 DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF------------LF 134
Query: 236 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ G G ++ + P+ P+ I S S+DN
Sbjct: 135 DTG--TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170
Score = 66.5 bits (163), Expect = 6e-12
Identities = 22/153 (14%), Positives = 55/153 (35%), Gaps = 22/153 (14%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+V+ D L + V + +++ L+ + + +A + K +A++
Sbjct: 383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAACYKHIAIYSHG 440
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
L S+ S V S ++ +A G D ++HV+
Sbjct: 441 KLTEVPISYNSS-----CVALSN-DKQFVAVGGQDSKVHVY------------KLSGASV 482
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ H A+I+ +++ N +++ + +
Sbjct: 483 SEVKTI-VHPAEITSVAFSNNGAFLV-ATDQSR 513
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 86.9 bits (216), Expect = 6e-19
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 11/160 (6%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL- 179
+ D+ +W + KP+ + C+ + P +E A GS + +++
Sbjct: 69 TCGTDRNAYVWTLKG-RTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFE 126
Query: 180 --RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 237
+ + H + + + + W P N +LA+ D + ++ E+
Sbjct: 127 QENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185
Query: 238 GPP----ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
G EL+F + ++ N + VS D+
Sbjct: 186 GSKMPFGELMFESSSSCGWVHGVCFSANGSR-VAWVSHDS 224
Score = 74.2 bits (183), Expect = 1e-14
Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 15/154 (9%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
++ ++ I++ + + H + H +V + + P S I T D+ +W L+
Sbjct: 25 ICPNNHEVHIYEKSGNKWVQ-VHELKEHNGQVTGVDWAPDSNRI-VTCGTDRNAYVWTLK 82
Query: 181 NLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
K V+W+P NE A R + + + E+
Sbjct: 83 GRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYF----------EQENDW 131
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
I + + W+PN + + S D
Sbjct: 132 WVCKHIKKPIRSTVLSLDWHPNSVL-LAAGSCDF 164
Score = 66.5 bits (163), Expect = 3e-12
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNE 206
++C ++N I A + V +++ K +++H + H ++ V W+P +
Sbjct: 7 LVEPISCHAWNKDRTQI-AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 65
Query: 207 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 266
I + GTDR +VW + + + W PNE
Sbjct: 66 RI-VTCGTDRNAYVW------------TLKGRTWKPTLVILRINRAARCVRWAPNEKK-F 111
Query: 267 CSVSEDN 273
S
Sbjct: 112 AVGSGSR 118
Score = 62.6 bits (153), Expect = 6e-11
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 21/135 (15%)
Query: 120 GSVADDQKLMIWDTRSHNV-SKPSHTVDA--------------HTAEVNCLSFNPYSEYI 164
GS D K I+ V +P+ T V+ + F+ +
Sbjct: 160 GS--CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSR 216
Query: 165 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+A S D TV L D + + S + V + + + ++G D ++
Sbjct: 217 VAWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITESSLV--AAGHDCFPVLFTYD 273
Query: 225 KIGEEQSTEDAEDGP 239
+ S D P
Sbjct: 274 SAAGKLSFGGRLDVP 288
Score = 49.9 bits (120), Expect = 8e-07
Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 9/103 (8%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D +++ ++ + + S + K +
Sbjct: 264 DCFPVLFT---YDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 320
Query: 185 KLHSFESHKDEIFQVQWSP---HNETILASSGTDRRLHVWDLS 224
L S HK+ + Q+ + ++G D + +WD+
Sbjct: 321 -LDSL--HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360
Score = 43.0 bits (102), Expect = 1e-04
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---YSEYILATGSADKTVALWDLR 180
D + + ++ H V+ +S T D +++WD+R
Sbjct: 306 DKKASSEGSAAA---GAGLDSL--HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360
Query: 181 NLKLKL 186
+L+ L
Sbjct: 361 SLESAL 366
Score = 38.0 bits (89), Expect = 0.004
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 15/78 (19%)
Query: 184 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 243
+ HSF + I W+ + T +A + +H++ + +
Sbjct: 1 MAYHSF--LVEPISCHAWNK-DRTQIAICPNNHEVHIY------------EKSGNKWVQV 45
Query: 244 FIHGGHTAKISDFSWNPN 261
H +++ W P+
Sbjct: 46 HELKEHNGQVTGVDWAPD 63
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 86.6 bits (215), Expect = 6e-19
Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 14/166 (8%)
Query: 121 SVADDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPYSE-YILATGSADKTVALWD 178
+ + DQ + ++ + + S + AH + + + + I+A+ S DKTV LW+
Sbjct: 28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
Query: 179 LRN--------LKLKLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEE 229
KL + K ++ V+++P + LA G D L ++D + +
Sbjct: 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE-PSD 146
Query: 230 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV--ICSVSEDN 273
+ L H SW P+ + + +
Sbjct: 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ 192
Score = 81.2 bits (201), Expect = 4e-17
Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 11/174 (6%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPH 204
H V+ + ++ Y ++ AT S+D+ + ++ L S+ +H I + W+
Sbjct: 10 HDDLVHDVVYDFYGRHV-ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 205 NE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 263
I+AS+ D+ + +W+ E+ E+ L + + P
Sbjct: 69 EYGRIIASASYDKTVKLWE-----EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 264 -WVICSVSEDNIMQEYCDSTDSDTKTMRLDSIRSNGGISSTASPTASSTASESP 316
+ + D I++ Y SD ++ L S I + S P
Sbjct: 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP 177
Score = 70.0 bits (172), Expect = 2e-13
Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 37/190 (19%)
Query: 109 VAW-HLLHESLFGSVADDQKLMIWDT------RSHNVSKPSHTVDAHTAEVNCLSFNPYS 161
+ W + + S + D+ + +W+ S T++ + + F P
Sbjct: 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH 122
Query: 162 E-YILATGSADKTVALWDLRN------------LKLKLHSFESHKDEIFQVQWSP--HNE 206
LA D + L+D +K+ +H F + W P +
Sbjct: 123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP 182
Query: 207 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV- 265
LA S ++ + +DG + GH + I SW P+
Sbjct: 183 EKLAVSALEQAIIYQ------------RGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230
Query: 266 --ICSVSEDN 273
I + +D
Sbjct: 231 QLIATGCKDG 240
Score = 63.5 bits (155), Expect = 3e-11
Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 108 DVAW---HLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY- 163
++W L + D ++ I+ +++ + + + N F+ ++
Sbjct: 219 SISWAPSIGRWYQLIATGCKDGRIRIFK-----ITEKLSPLASEESLTNSNMFDNSADVD 273
Query: 164 ILATGSAD----KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 219
+ A G +D + L ++L L + H E++ V W+ TIL+S+G D ++
Sbjct: 274 MDAQGRSDSNTEEKAELQSNLQVEL-LSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVR 331
Query: 220 VWDLS 224
+W +
Sbjct: 332 LWKAT 336
Score = 60.4 bits (147), Expect = 3e-10
Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 29/175 (16%)
Query: 109 VAWH--LLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---YSEY 163
++W A +Q ++ + + + + H + + +S+ P
Sbjct: 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-HVAAKLPGHKSLIRSISWAPSIGRWYQ 231
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV--QWSPHNETI---LASSGTDRRL 218
++ATG D + ++ + KL S + S + + S T+ +
Sbjct: 232 LIATGCKDGRIRIFKITE---KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA 288
Query: 219 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ ++ ELL H H ++ SWN ++ S +D
Sbjct: 289 ELQSNLQV--------------ELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDG 328
Score = 46.1 bits (110), Expect = 1e-05
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
++K + + D H EV +S+N IL++ D V L
Sbjct: 277 QGRSDSNTEEKAELQSNLQ---VELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRL 332
Query: 177 WDLRNLKL--KLHSFESHK 193
W + + +
Sbjct: 333 WKATYSNEFKCMSVITAQQ 351
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 86.3 bits (214), Expect = 2e-18
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 18/166 (10%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 168
+AWH H S + +M+W+ + + L FNP +
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
Query: 169 SADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 227
S + T L D + N+ S ++ + S + ++ + + + ++ G
Sbjct: 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMD--G 240
Query: 228 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+E H K++ + NP W + + S D
Sbjct: 241 KELWN-------------LRMHKKKVTHVALNPCCDWFLATASVDQ 273
Score = 85.9 bits (213), Expect = 2e-18
Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 18/173 (10%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ + +++ + K + H +V ++ NP ++ LAT S D+TV +WDLR
Sbjct: 226 TGDNVGNVILLNMDG----KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
Query: 181 NLKLK--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 238
++ K H+ + +SP + L ++ + V+ S+ +
Sbjct: 282 QVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPH 339
Query: 239 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRL 291
H H I +W+P ++ D + T + +T+ +
Sbjct: 340 R------HFQHLTPIK-AAWHPRYNLIVVGRYPDP---NFKSCTPYELRTIDV 382
Score = 48.5 bits (116), Expect = 2e-06
Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 121 SVADDQKLMIWDTRS---------HNVSKPSHT-----VDAHTAEVNCLSFNPYSEYILA 166
+ ++ ++ H H + + P +
Sbjct: 313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSC 372
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ-WSPHNETILASSGTDRRLHVWDLS 224
T +T+ ++D + K+ ++ I + ++P LA S + +W
Sbjct: 373 TPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLA-SAMGYHILIWSQQ 429
Score = 35.4 bits (82), Expect = 0.028
Identities = 10/67 (14%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLS-FNPYSEYILATGSADKTVALWD 178
+ + + + ++D S K + D ++ ++ L+ FNP + + A+ + +W
Sbjct: 373 TPYELRTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTL-ASAM-GYHILIWS 427
Query: 179 LRNLKLK 185
+ + +
Sbjct: 428 QQEARTR 434
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 83.8 bits (208), Expect = 7e-18
Identities = 27/157 (17%), Positives = 64/157 (40%), Gaps = 12/157 (7%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D +W + + + T+D HT + + + +++Y TGSAD ++ LWD+
Sbjct: 49 SCSKDSSASVWYSLN---GERLGTLDGHTGTIWSIDVDCFTKYC-VTGSADYSIKLWDVS 104
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASS----GTDRRLHVWDLSKIGEEQSTEDAE 236
N + + +++ + +V++SP LA ++++++ +
Sbjct: 105 NGQC-VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER-DSATHELTKV 161
Query: 237 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
P I + W+ ++I + +D
Sbjct: 162 SEEPIHKIITHEGLDAATVAGWSTKGKYII-AGHKDG 197
Score = 77.6 bits (192), Expect = 8e-16
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 23/173 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAE--VNCLSFNPYSEYILATGSADKTVALWD 178
+ D S +P H + H ++ +YI G D ++ +D
Sbjct: 148 EIERDSATHELTKVS---EEPIHKIITHEGLDAATVAGWSTKGKYI-IAGHKDGKISKYD 203
Query: 179 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 238
+ N + S + H+ I +Q+SP + T +S D + D
Sbjct: 204 VSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLV------------DVSTL 250
Query: 239 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRL 291
++L + ++ P + ++I S + R
Sbjct: 251 --QVLKKYETDCP-LNTAVITPLKEFII-LGGGQEAKDVTTTSANEGKFEARF 299
Score = 69.6 bits (171), Expect = 3e-13
Identities = 16/157 (10%), Positives = 49/157 (31%), Gaps = 22/157 (14%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
++ SH + + H + + +N + + + S D + ++W
Sbjct: 7 HHHHSSGENLYFQGSH---MKAIKLTGHERPLTQVKYNKEGDLL-FSCSKDSSASVWYSL 62
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
N + L + + H I+ + + D + +W D +G
Sbjct: 63 NGER-LGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLW------------DVSNG-- 106
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQE 277
+ + + ++P + ++ ++ +
Sbjct: 107 QCVATWKSPVP-VKRVEFSPCGNY-FLAILDNVMKNP 141
Score = 56.8 bits (138), Expect = 4e-09
Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 20/136 (14%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI------------ 164
+ F + + D + D + + + +N P E+I
Sbjct: 231 TYFITSSRDTNSFLVDVSTL---QVLKKYETDCP-LNTAVITPLKEFIILGGGQEAKDVT 286
Query: 165 -LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+ + + + + H + V SP T AS G D + +
Sbjct: 287 TTSANEGKFEARFYHKIFEEE-IGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHF 344
Query: 224 SKIGEEQSTEDAEDGP 239
K D E
Sbjct: 345 EK-SYFDFKYDVEKAA 359
Score = 45.7 bits (109), Expect = 2e-05
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 17/109 (15%)
Query: 165 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
L+ + K H+ + QV+++ +L S D VW
Sbjct: 5 HHHHHHSSGENLYFQGSHM-KAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVW--- 59
Query: 225 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ +G E L GHT I + + + S D
Sbjct: 60 ---------YSLNG--ERLGTLDGHTGTIWSIDVDCFTKY-CVTGSADY 96
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 83.8 bits (208), Expect = 7e-18
Identities = 13/153 (8%), Positives = 25/153 (16%), Gaps = 13/153 (8%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
V + I+ K + + + + + L +
Sbjct: 41 YVYKRRTDGIYIINL---GKTWEKLQLAARVIVAIENPQDIIVQ-SARPYGQRAVLKFAQ 96
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
H F Q + + E A P
Sbjct: 97 YTG-AHAIAGRHTPGTFTNQLQT-SFSEPRLLILTDPRTDHQP-------IKESALGNIP 147
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ F + D N
Sbjct: 148 TIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFW 180
Score = 79.5 bits (197), Expect = 2e-16
Identities = 8/121 (6%), Positives = 22/121 (18%), Gaps = 10/121 (8%)
Query: 120 GSVADDQKLMIWDTRS----HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 175
N+ + + ++ + G +A
Sbjct: 126 LI--LTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLA 183
Query: 176 LWDLRN----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 231
L+ L + + E A+ V + + +
Sbjct: 184 RMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTW 243
Query: 232 T 232
Sbjct: 244 G 244
Score = 77.6 bits (192), Expect = 8e-16
Identities = 8/160 (5%), Positives = 21/160 (13%), Gaps = 21/160 (13%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
Q+ ++ + + HT
Sbjct: 84 RP--YGQRAVLKFAQY---TGAHAIAGRHTPGTFTNQLQTSFSEP-RLLILTDPRTDHQP 137
Query: 180 RNLKLK------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 233
+ +N+ + L L
Sbjct: 138 IKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQM-RGTILPG 196
Query: 234 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
D D + ++ +
Sbjct: 197 HKWDVM--------VDLFFYRDPEEAKEQEEEEAALVAPD 228
Score = 77.2 bits (191), Expect = 1e-15
Identities = 0/159 (0%), Positives = 0/159 (0%), Gaps = 21/159 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD-- 178
++ + + + + + + T + P +A A
Sbjct: 223 ALVAPDYGAVAEYAAP--AADTWGGEWGTDAAAQPAAIPAQAGA-DWTAAPAPAAGGWDT 279
Query: 179 ----LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 234
Sbjct: 280 AAAP---- 335
Query: 235 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
Sbjct: 336 -------- 366
Score = 73.4 bits (181), Expect = 2e-14
Identities = 13/124 (10%), Positives = 19/124 (15%), Gaps = 6/124 (4%)
Query: 120 GSVADDQKLMIWD--TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
G L R + V E A A A+
Sbjct: 176 GC--LFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVA 233
Query: 178 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 237
+ E D Q P + + +
Sbjct: 234 EYAAPAADTWGGEWGTDAAAQPAAIP-AQAGADWTAAPAPAAGGWD-TAAAPAPGWEQGS 291
Query: 238 GPPE 241
P
Sbjct: 292 APVP 295
Score = 67.2 bits (165), Expect = 2e-12
Identities = 0/115 (0%), Positives = 0/115 (0%), Gaps = 9/115 (7%)
Query: 117 SLFGSVADDQKLMIWDTRS----HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK 172
+ A +
Sbjct: 262 AGADWTAAPAPAAGGWDTAAAPA- 320
Query: 173 TVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
Sbjct: 321 - 374
Score = 59.9 bits (146), Expect = 5e-10
Identities = 9/132 (6%), Positives = 27/132 (20%), Gaps = 19/132 (14%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 202
+ + +T ++ + K + I ++
Sbjct: 19 IQMMLAADVHLGTKNCDFQMER--YVYKRRTDGIYIINLGKT-WEKLQLAARVIVAIENP 75
Query: 203 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 262
+ + ++ +R + A+ I G HT +
Sbjct: 76 Q-DIIVQSARPYGQRAVLK------------FAQYT--GAHAIAGRHTPGTFTNQLQTSF 120
Query: 263 PWVICSVSEDNI 274
+
Sbjct: 121 SEPRLL-ILTDP 131
Score = 31.8 bits (73), Expect = 0.45
Identities = 5/88 (5%), Positives = 13/88 (14%), Gaps = 17/88 (19%)
Query: 186 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 245
D + R ++ ++ G+ L
Sbjct: 18 DIQMMLAADVHLGTKNCDFQMER--YVYKRRTDGIYIINL-GKTWEK---------LQ-- 63
Query: 246 HGGHTAKISDFSWNPNEPWVICSVSEDN 273
I + +
Sbjct: 64 --LAARVIVAIENPQDIIVQS-ARPYGQ 88
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 83.4 bits (207), Expect = 2e-17
Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 17/156 (10%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+V DD ++ + S T + V + F+P S + T +D+ ++ +D +
Sbjct: 178 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237
Query: 181 NLKLKLHSFESHKDEIFQVQWSP--HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 238
+ + L E ++ + ++ + A+ G D + VWD++ +
Sbjct: 238 SGEF-LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT-SKCVQK------ 289
Query: 239 PPELLFIHGGHTAKIS-DFSWNPNEPWVICSVSEDN 273
+ N I S+S D
Sbjct: 290 ----WTLDKQQLGNQQVGVVATGNG--RIISLSLDG 319
Score = 76.5 bits (189), Expect = 3e-15
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 183
D + S N V H+ +N T D +V + K
Sbjct: 138 RDNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 194
Query: 184 LK--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
+ + V++SP + + + G+DR++ +D GE
Sbjct: 195 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKY 244
Score = 76.1 bits (188), Expect = 5e-15
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY---------ILATGSAD 171
+ K++++D +S V + T+++N +S+ P + ++ATGS D
Sbjct: 505 AGDVMGKILLYDLQSREV--KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 562
Query: 172 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+ ++ ++ + + +HKD + + W + L SSG D + W++
Sbjct: 563 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWNV 612
Score = 71.9 bits (177), Expect = 1e-13
Identities = 24/161 (14%), Positives = 41/161 (25%), Gaps = 25/161 (15%)
Query: 123 ADDQKLMIWDTRSHNVSKPSHTVDAH-TAEVNCLSFNPYSE-YILATGSADKTVALWDLR 180
+ D P H ++ V + F+P L +G V +W
Sbjct: 38 GKSAFVRCLDDGDSK-VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 96
Query: 181 NLKLK-------LHSFESHKDEIFQVQWSPHNETIL-ASSGTDRRLHVWDLSKIGEEQST 232
K F+ I + W + G D
Sbjct: 97 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS---------- 146
Query: 233 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ G L GH+ +I+ + P +V +D
Sbjct: 147 --WDSG--NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 183
Score = 71.9 bits (177), Expect = 1e-13
Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 30/162 (18%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
Q + D + A+ + +S +P Y +A G + L+DL+
Sbjct: 465 EGNTIQVFKLSD-----LEVSFDLKTPLRAKPSYISISPSETY-IAAGDVMGKILLYDLQ 518
Query: 181 NLKLKLHSFESHKDEIFQVQWSP---------HNETILASSGTDRRLHVWDLSKIGEEQS 231
+ ++K + +I + W P E ++A+ D + ++ + +
Sbjct: 519 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR------ 572
Query: 232 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
P +++ H +++ W V S D
Sbjct: 573 -------PMKIIKALNAHKDGVNNLLWETPSTLV--SSGADA 605
Score = 70.0 bits (172), Expect = 4e-13
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 45/196 (22%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+V D + +WD + + T+D + + + S D T+ ++L
Sbjct: 269 TVGADATIRVWDVTTSKCVQ-KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+ ++ L + H I + +P L S D R+ W S + +
Sbjct: 328 HDEV-LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ------------ 369
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRLDSIRSN--- 297
H+ I + + S+S D T++++ I +
Sbjct: 370 -------DHSNLIVSLDNSKAQ--EYSSISWD--------------DTLKVNGITKHEFG 406
Query: 298 GGISSTASPTASSTAS 313
++ TA
Sbjct: 407 SQPKVASANNDGFTAV 422
Score = 55.3 bits (134), Expect = 2e-08
Identities = 18/153 (11%), Positives = 40/153 (26%), Gaps = 30/153 (19%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S++ D L + H ++ S N + A + D + +
Sbjct: 388 SISWDDTLKVNGITKH----------EFGSQPKVASANN--DGFTAVLTNDDDLLILQSF 435
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+ + + + L T + + DL +
Sbjct: 436 TGDIIKSVRLNSPGSAVSLSQNY-VAVGLEEGNTIQVFKLSDLEVSFD------------ 482
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ AK S S +P+E ++ +
Sbjct: 483 ----LKTPLRAKPSYISISPSETYIA-AGDVMG 510
Score = 53.4 bits (129), Expect = 8e-08
Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 9/118 (7%)
Query: 147 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQ-VQWSP- 203
LS++P + I V D + K+ + F H + V++SP
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75
Query: 204 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 261
L S ++ VW + E S E + ISD SW+
Sbjct: 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ------VLAGPISDISWDFE 127
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 82.2 bits (204), Expect = 2e-17
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S D+++ IW T + S + H V ++++P Y LA+ S D T +W
Sbjct: 33 SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY-LASASFDATTCIWKKN 91
Query: 181 NLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ + + E H++E+ V W+P + +LA+ D+ + VW++ E+
Sbjct: 92 QDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEV-----------DEEDE 139
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
E + + HT + W+P++ + S S D+
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPSQEL-LASASYDD 172
Score = 79.5 bits (197), Expect = 2e-16
Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 6/156 (3%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ + D+ + +W+ + + +++HT +V + ++P S+ +LA+ S D TV L+
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREE 180
Query: 181 NLKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ E H+ ++ + + P + LAS DR + +W G EQ + P
Sbjct: 181 EDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239
Query: 240 P--ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ + G H+ I D +W + + D+
Sbjct: 240 SWKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDD 274
Score = 75.3 bits (186), Expect = 4e-15
Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 24/180 (13%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 168
V WH + L S + D + ++ + T++ H + V L+F+P + + A+
Sbjct: 156 VVWHP-SQELLASASYDDTVKLYREEEDD-WVCCATLEGHESTVWSLAFDPSGQRL-ASC 212
Query: 169 SADKTVALWDL----RNLKLKLHSFES-----------HKDEIFQVQWSPHNETILASSG 213
S D+TV +W + + H I+ + W + A++
Sbjct: 213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGAL-ATAC 271
Query: 214 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
D + V+ E+ +++ + +H H+ ++ +WNP EP ++ S S+D
Sbjct: 272 GDDAIRVFQ-----EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326
Score = 73.0 bits (180), Expect = 2e-14
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 23/133 (17%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVD-------------AHTAEVNCLSFNPYSEYILAT 167
S +DD+ + IW + H+ + +++ + + AT
Sbjct: 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGAL-AT 269
Query: 168 GSADKTVALWDLR--------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 219
D + ++ L H ++H ++ V W+P +LAS D +
Sbjct: 270 ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329
Query: 220 VWDLSKIGEEQST 232
W + E
Sbjct: 330 FWKYQR-PEGLHH 341
Score = 68.7 bits (169), Expect = 6e-13
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 143 HTVDAHT-AEVNCLSFNPYSEYILATGSADKTVALWDL--RNLKLKLHSFESHKDEIFQV 199
V AH + L++NP +LA+ D+ + +W + K E H+ + +V
Sbjct: 9 GRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 200 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 259
WSP LAS+ D +W E + GH ++ +W
Sbjct: 68 AWSP-CGNYLASASFDATTCIW------------KKNQDDFECVTTLEGHENEVKSVAWA 114
Query: 260 PNEPWVICSVSEDN 273
P+ + + S D
Sbjct: 115 PSGNLLA-TCSRDK 127
Score = 59.9 bits (146), Expect = 4e-10
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 121 SVADDQKLMIWDTRS------HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTV 174
+ D + ++ S +H AH+ +VNC+++NP +LA+ S D V
Sbjct: 269 TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV 328
Query: 175 ALWDLRNLKLKLHSFESH 192
A W + + LH H
Sbjct: 329 AFWKYQRPEG-LHHHHHH 345
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 81.3 bits (202), Expect = 3e-17
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S +DD+ L IWD S K T+ H+ V C +FNP S I +GS D++V +WD++
Sbjct: 82 SASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVK 137
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 138 TGKC-LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS-GQCLKT-------- 186
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ +S ++PN + I + + DN
Sbjct: 187 ----LIDDDNPPVSFVKFSPNGKY-ILAATLDN 214
Score = 75.6 bits (187), Expect = 2e-15
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 18/131 (13%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 202
T+ HT V+ + F+P E++ A+ SADK + +W + K + HK I V WS
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAWS 74
Query: 203 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 262
+ +L S+ D+ L +WD+S G+ T L GH+ + ++NP
Sbjct: 75 S-DSNLLVSASDDKTLKIWDVSS-GKCLKT---------LK----GHSNYVFCCNFNPQS 119
Query: 263 PWVICSVSEDN 273
I S S D
Sbjct: 120 NL-IVSGSFDE 129
Score = 73.6 bits (182), Expect = 1e-14
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
GS D+ + IWD ++ K T+ AH+ V+ + FN I + S D +WD
Sbjct: 125 GS--FDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDGLCRIWDT 178
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
+ + + + V++SP N + ++ D L +WD SK G+ T
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSK-GKCLKT 229
Score = 71.3 bits (176), Expect = 6e-14
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 23/157 (14%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
S + D IWDT S + T +D V+ + F+P +YI + D T+ LWD
Sbjct: 166 SSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYI-LAATLDNTLKLWDY 221
Query: 180 RNLKLKLHSFESHKDEIFQVQW--SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 237
K L ++ HK+E + + S + S D +++W+L E
Sbjct: 222 SKGKC-LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQ--- 276
Query: 238 GPPELLFIHGGHTAKISDFSWNPNEPWVI-CSVSEDN 273
GHT + + +P E + ++ D
Sbjct: 277 ----------GHTDVVISTACHPTENIIASAALENDK 303
Score = 66.7 bits (164), Expect = 2e-12
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN---PYSEYILATGSADKTVALW 177
+ D L +WD K T H E C+ N ++I +GS D V +W
Sbjct: 209 AATLDNTLKLWDYSK---GKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIW 264
Query: 178 DLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-ASSGTDRRLHVWDL 223
+L+ ++ + + H D + P I A+ D+ + +W
Sbjct: 265 NLQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 49.4 bits (119), Expect = 8e-07
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 21/108 (19%)
Query: 166 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 225
AT S V L + H + V++SP N LASS D+ + +W
Sbjct: 1 ATQSKPTPVKPNY----AL-KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW---- 50
Query: 226 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
A DG + GH ISD +W+ + + S S+D
Sbjct: 51 --------GAYDG--KFEKTISGHKLGISDVAWSSDSNL-LVSASDDK 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 82.1 bits (203), Expect = 3e-17
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 16/155 (10%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ ++ +++ N K + T H V C+ + P S I T S D+ +++ R
Sbjct: 28 TTTATNQVELYEQDG-NGWKHARTFSDHDKIVTCVDWAPKSNRI-VTCSQDRNAYVYEKR 85
Query: 181 NLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 238
+ V+WSP NE A R + V + E+
Sbjct: 86 PDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYF----------EQEND 134
Query: 239 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ + I W+PN ++ + D
Sbjct: 135 WWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADR 168
Score = 81.7 bits (202), Expect = 3e-17
Identities = 21/159 (13%), Positives = 56/159 (35%), Gaps = 9/159 (5%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL- 179
+ + D+ +++ R K + + + ++P +E A GS + +++
Sbjct: 72 TCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFE 130
Query: 180 --RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL---SKIGEEQSTED 234
+ + H + I + W P N +LA+ DR+ +V + +++
Sbjct: 131 QENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVW 189
Query: 235 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
P + + ++P+ + D+
Sbjct: 190 GSRLPFNTVCAEYPSGGWVHAVGFSPSGNA-LAYAGHDS 227
Score = 69.8 bits (171), Expect = 3e-13
Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 15/127 (11%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWSPHNE 206
+FN T +A V L++ K +F H + V W+P +
Sbjct: 10 LPKPSYEHAFNSQRTEF-VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN 68
Query: 207 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 266
I + DR +V++ DG + + + W+PNE
Sbjct: 69 RI-VTCSQDRNAYVYEKR-----------PDGTWKQTLVLLRLNRAATFVRWSPNEDK-F 115
Query: 267 CSVSEDN 273
S
Sbjct: 116 AVGSGAR 122
Score = 53.2 bits (128), Expect = 8e-08
Identities = 16/130 (12%), Positives = 45/130 (34%), Gaps = 20/130 (15%)
Query: 121 SVADDQKLMIWDTRSHNV-SKPSHTVDA-------------HTAEVNCLSFNPYSEYILA 166
+ D+K + +V +KP +V V+ + F+P + A
Sbjct: 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNAL-A 221
Query: 167 TGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
D +V + + L + + + + + W+ + + ++G + +
Sbjct: 222 YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIV--AAGYNYSPILLQG 279
Query: 224 SKIGEEQSTE 233
++ G + +
Sbjct: 280 NESGWAHTRD 289
Score = 50.1 bits (120), Expect = 7e-07
Identities = 20/167 (11%), Positives = 41/167 (24%), Gaps = 7/167 (4%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHN-VSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
V + +L D + I + + TV + L + S I+A
Sbjct: 210 AVGFSPSGNAL-AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVA 267
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
G + L + ++ + H + + L
Sbjct: 268 AGYNYSPILLQGNESGWAHTRDLDAGTSKT----SFTHTGNTGEGREEEGPVSFTALRST 323
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ + L +H A + ++ P S D
Sbjct: 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDG 370
Score = 38.2 bits (89), Expect = 0.004
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
+ W +ES + + ++ + + +DA T++ + E
Sbjct: 256 SLLWA--NESAIVAAGYNYSPILLQGNESGWAH-TRDLDAGTSKTSFTHTGNTGEGREEE 312
Query: 168 GSADKTVALWDLRNLKLKLHSFES------HKDEIFQVQW---SPHNETILASSGTDRRL 218
G T RN+ LK S H++ I ++ +P N T SSGTD R+
Sbjct: 313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRV 372
Query: 219 HVWDL 223
+W L
Sbjct: 373 VLWTL 377
Score = 36.6 bits (85), Expect = 0.011
Identities = 7/85 (8%), Positives = 24/85 (28%), Gaps = 14/85 (16%)
Query: 189 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 248
++ ++ T ++ ++ ++ + + +
Sbjct: 7 LHILPKPSYEHAFNS-QRTEFVTTTATNQVELY------------EQDGNGWKHARTFSD 53
Query: 249 HTAKISDFSWNPNEPWVICSVSEDN 273
H ++ W P I + S+D
Sbjct: 54 HDKIVTCVDWAPKS-NRIVTCSQDR 77
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 80.6 bits (200), Expect = 4e-17
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S A D + I+D + K HT++ H + L+F+P S+ + T S D + ++D++
Sbjct: 181 SGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQLL-VTASDDGYIKIYDVQ 236
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+ L + H + V + P + SS +D+ + VW D
Sbjct: 237 HANL-AGTLSGHASWVLNVAFCPDDTHF-VSSSSDKSVKVW------------DVGTR-- 280
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ H ++ +N N ++ SV +D
Sbjct: 281 TCVHTFFDHQDQVWGVKYNGNGSKIV-SVGDDQ 312
Score = 79.0 bits (196), Expect = 2e-16
Identities = 26/104 (25%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ +DD + I+D + + + T+ H + V ++F P + + S+DK+V +WD+
Sbjct: 223 TASDDGYIKIYDVQH---ANLAGTLSGHASWVLNVAFCPDDTHF-VSSSSDKSVKVWDVG 278
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+H+F H+D+++ V+++ N + + S G D+ +H++D
Sbjct: 279 TRTC-VHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDCP 320
Score = 77.5 bits (192), Expect = 5e-16
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ K+ I+ S K +++D + ++++P +Y+ A+G+ D + ++D+
Sbjct: 139 TGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPDGKYL-ASGAIDGIINIFDIA 194
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
KL LH+ E H I + +SP + +L ++ D + ++D+ T
Sbjct: 195 TGKL-LHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQH-ANLAGT 243
Score = 77.5 bits (192), Expect = 6e-16
Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D + +WD + K ++DA + L+F+P S+Y+ ATG+ V ++ +
Sbjct: 97 SSSLDAHIRLWDLENG---KQIKSIDAGPVDAWTLAFSPDSQYL-ATGTHVGKVNIFGVE 152
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+ K +S ++ I + +SP + LAS D ++++D++ G+ T +
Sbjct: 153 SGKK-EYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT-GKLLHTLE------ 203
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
GH I +++P+ + + S+D
Sbjct: 204 -------GHAMPIRSLTFSPDSQL-LVTASDDG 228
Score = 77.1 bits (191), Expect = 8e-16
Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 24/164 (14%)
Query: 114 LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY---ILATGSA 170
+H S + + + AH + +++ + + TGS
Sbjct: 1 MHHHHHHS-SRENLYFQGTNQY---GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSL 56
Query: 171 DKTVALWDLRNLKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 229
D V +W R+ +L L S E H+ + V S I ASS D + +WDL G++
Sbjct: 57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLEN-GKQ 114
Query: 230 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ D +++P+ + + + +
Sbjct: 115 IKSID-------------AGPVDAWTLAFSPDSQY-LATGTHVG 144
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 80.7 bits (200), Expect = 5e-17
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
SV D +L +W+T + +T AH + VN LS +P +YI ATG DK + +WD+
Sbjct: 189 SVGWDGRLKVWNTNF----QIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDIL 243
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
NL I Q+ ++P +A GTD+ + +++L + E P
Sbjct: 244 NLTY-PQREFDAGSTINQIAFNP-KLQWVA-VGTDQGVKIFNLMT-QSKAPVCTIEAEPI 299
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
G + + +WN + + D
Sbjct: 300 TKAEGQKGKNPQCTSLAWNALGKKLF-AGFTDG 331
Score = 69.2 bits (170), Expect = 4e-13
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
S D+ L +WD R+ H +EV ++F+P + I + A++ + LW++
Sbjct: 94 SS--WDKTLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQI-LSAGAEREIKLWNI 147
Query: 180 RN-LKLKLHSFESHKDEIFQVQWSP---------HNETILASSGTDRRLHVWDLS 224
K E+H D + V++SP AS G D RL VW+ +
Sbjct: 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN 202
Score = 66.5 bits (163), Expect = 3e-12
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL- 179
+ D+KL+IWD + + +N ++FNP +A G+ D+ V +++L
Sbjct: 230 TGGKDKKLLIWDILN---LTYPQREFDAGSTINQIAFNP-KLQWVAVGT-DQGVKIFNLM 284
Query: 180 -----------RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
K + + + W+ L + TD + +
Sbjct: 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFE 339
Score = 63.4 bits (155), Expect = 3e-11
Identities = 27/163 (16%), Positives = 66/163 (40%), Gaps = 28/163 (17%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---------YSEYILATGSAD 171
S ++++ +W+ S + H+ V+C+ ++P A+ D
Sbjct: 135 SAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 172 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 231
+ +W+ N ++ ++F++H+ + + SP N +A+ G D++L +WD+
Sbjct: 194 GRLKVWNT-NFQI-RYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILN-LTYPQ 249
Query: 232 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
E + I+ ++NP W + ++ +
Sbjct: 250 REF-------------DAGSTINQIAFNPKLQW-VAVGTDQGV 278
Score = 62.6 bits (153), Expect = 5e-11
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 20/120 (16%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-----ILATGSADKTVALWD 178
D+ L I + ++ H+ V + + +L +GS DKTV +W
Sbjct: 3 DNSSLDIQVVKRG-------ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWK 55
Query: 179 LRNLKLK------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
L + + H + + S SS D+ L +WDL G
Sbjct: 56 LYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRT-GTTYKR 113
Score = 42.6 bits (101), Expect = 1e-04
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 20/111 (18%)
Query: 169 SADKTVALWDLRNLKLKLHSFESHKDEIFQV------QWSPHNETILASSGTDRRLHVWD 222
+ + ++ + +K E H D + + + + + +L S D+ + +W
Sbjct: 2 ADNSSLDIQV-----VKRGILEGHSDWVTSIVAGFSQKENE-DSPVLISGSRDKTVMIWK 55
Query: 223 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
L E+ GH +SD + + + S S D
Sbjct: 56 L-------YEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF-AISSSWDK 98
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 79.6 bits (197), Expect = 2e-16
Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 22/154 (14%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
G + + W R + + H + V + F+P + + S D T+ +WD
Sbjct: 83 GPLGQKRDPKEWIPRP----PEKYALSGHRSPVTRVIFHPVFSVM-VSASEDATIKVWDY 137
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ + H D + + + +LAS D + +WD E T
Sbjct: 138 ETGDF-ERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQG-FECIRT------- 187
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ GH +S S PN I S S D
Sbjct: 188 --MH----GHDHNVSSVSIMPNGDH-IVSASRDK 214
Score = 76.9 bits (190), Expect = 2e-15
Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D+ + +WD + T+ H V + F+ ++I + + DKT+ +WD +
Sbjct: 313 SGSRDKTIKMWDVST---GMCLMTLVGHDNWVRGVLFHSGGKFI-LSCADDKTLRVWDYK 368
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
N + + + +H+ + + + + + D+ + VW+
Sbjct: 369 NKRC-MKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 409
Score = 75.7 bits (187), Expect = 4e-15
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 21/153 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S ++D + +WD + T+ HT V +SF+ + + A+ SAD T+ LWD +
Sbjct: 125 SASEDATIKVWDYET---GDFERTLKGHTDSVQDISFDHSGKLL-ASCSADMTIKLWDFQ 180
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+ + + H + V P N + S+ D+ + +W++ G T
Sbjct: 181 GFEC-IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQT-GYCVKT-------- 229
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
F GH + N + I S S D
Sbjct: 230 ---FT--GHREWVRMVRPNQDGTL-IASCSNDQ 256
Score = 75.3 bits (186), Expect = 6e-15
Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 39/169 (23%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI------------------- 164
+DQ + +W + + + H V C+S+ P S Y
Sbjct: 254 NDQTVRVWVVATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310
Query: 165 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
L +GS DKT+ +WD+ L + H + + V + + S D+ L VWD
Sbjct: 311 LLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDY- 367
Query: 225 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
K T + H ++ ++ P+V+ + S D
Sbjct: 368 KNKRCMKTLN-------------AHEHFVTSLDFHKTAPYVV-TGSVDQ 402
Score = 69.5 bits (171), Expect = 4e-13
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 39/172 (22%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D+ + +W+ ++ T H V + N I A+ S D+TV +W +
Sbjct: 209 SASRDKTIKMWEVQT---GYCVKTFTGHREWVRMVRPNQDGTLI-ASCSNDQTVRVWVVA 264
Query: 181 NLKLKLHSFESHKDEIFQVQWSP-------------------HNETILASSGTDRRLHVW 221
+ H+ + + W+P L S D+ + +W
Sbjct: 265 TKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Query: 222 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
D G L GH + ++ +++ S ++D
Sbjct: 324 ------------DVSTG--MCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDK 360
Score = 59.1 bits (144), Expect = 9e-10
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S ADD+ L +WD ++ + T++AH V L F+ + Y+ TGS D+TV +W+ R
Sbjct: 355 SCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWECR 410
Score = 53.8 bits (130), Expect = 5e-08
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 165 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+ W R + ++ H+ + +V + P +++ S+ D + VW
Sbjct: 82 GGPLGQKRDPKEWIPRP--PEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVW--- 135
Query: 225 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
D E G + GHT + D S++ + + S S D
Sbjct: 136 ---------DYETG--DFERTLKGHTDSVQDISFDHSGKL-LASCSADM 172
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 78.5 bits (194), Expect = 3e-16
Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 32/174 (18%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP----------------YSEYI 164
+ D + + + +AHT N +S+ P
Sbjct: 122 CGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR 181
Query: 165 LATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPHNE---TILASSGTDRRLH 219
A+G D + LW + E+H D + V W+P + +AS D R+
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241
Query: 220 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+W +DA +H + SW+ ++ DN
Sbjct: 242 IWTC---------DDASSNTWSPKLLH-KFNDVVWHVSWSITAN-ILAVSGGDN 284
Score = 77.7 bits (192), Expect = 4e-16
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 15/141 (10%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE-YILATGSADKTVALWDLRNL 182
D+ + I+D R+ + H V +++ ILA+ S D+ V +W N
Sbjct: 33 SDRSVKIFDVRN-GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91
Query: 183 K-LKLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
K H H + V W+PH+ ILA +D + + +G
Sbjct: 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY-----------TGEGQW 140
Query: 241 ELLFIHGGHTAKISDFSWNPN 261
E+ I+ HT + SW P
Sbjct: 141 EVKKINNAHTIGCNAVSWAPA 161
Score = 77.3 bits (191), Expect = 6e-16
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWSPHNE 206
H ++ + Y LAT S+D++V ++D+RN L H+ ++QV W+
Sbjct: 12 HEDMIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 207 -TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-W 264
ILAS DR++ +W E+G E H GH + ++ W P++
Sbjct: 71 GNILASCSYDRKVIIW------------REENGTWEKSHEHAGHDSSVNSVCWAPHDYGL 118
Query: 265 VICSVSEDN 273
++ S D
Sbjct: 119 ILACGSSDG 127
Score = 72.3 bits (178), Expect = 3e-14
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---YSEYILATGSADKTVALW 177
S D + +W K ++AH+ V +++ P +A+ S D V +W
Sbjct: 184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
Query: 178 DL---RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 230
+ D ++ V WS ILA SG D ++ +W S G+
Sbjct: 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESVDGQWV 298
Score = 53.8 bits (130), Expect = 3e-08
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 108 DVAWH---LLHESLFGSVADDQKLMIWDTRSHNVSKP-SHTVDAHTAEVNCLSFNPYSEY 163
DVAW L S S + D ++ IW + + + V +S++ +
Sbjct: 217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TAN 275
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 203
ILA D V LW ++ + V S
Sbjct: 276 ILAVSGGDNKVTLWKE-SVDGQWVCISDVNKGQGSVSASV 314
Score = 37.6 bits (88), Expect = 0.006
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 189 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 248
SH+D I Q + T LA+ +DR + ++ D +G L+ G
Sbjct: 9 DTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIF------------DVRNGGQILIADLRG 55
Query: 249 HTAKISDFSWNPNEPW-VICSVSEDN 273
H + +W ++ S S D
Sbjct: 56 HEGPVWQVAWAHPMYGNILASCSYDR 81
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 78.7 bits (195), Expect = 3e-16
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 21/154 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S A D +WD R T H +++N + F P ATGS D T L+DLR
Sbjct: 201 SGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLR 256
Query: 181 NLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ L +S ++ I V +S + +L + D +VWD K +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK-ADRAGV------- 307
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
L GH ++S + + + S D+
Sbjct: 308 ---LA---GHDNRVSCLGVTDDGMA-VATGSWDS 334
Score = 76.4 bits (189), Expect = 2e-15
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
S D +WD + + + T HT +V LS P + +G+ D + LWD+
Sbjct: 160 SS--GDTTCALWDIET---GQQTTTFTGHTGDVMSLSLAPDTRLF-VSGACDASAKLWDV 213
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
R +F H+ +I + + P N A+ D ++DL + +E T
Sbjct: 214 REGMC-RQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL-RADQELMT 263
Score = 74.9 bits (185), Expect = 5e-15
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 24/156 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D KL+IWD+ + + H + ++ V ++ P Y+ A G D ++++L+
Sbjct: 72 SASQDGKLIIWDSYT---TNKVHAIPLRSSWVMTCAYAPSGNYV-ACGGLDNICSIYNLK 127
Query: 181 ---NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 237
H + ++ + I+ SSG D +WD+ G++ +T
Sbjct: 128 TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSG-DTTCALWDIET-GQQTTT----- 179
Query: 238 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
F GHT + S P+ + S + D
Sbjct: 180 ------FT--GHTGDVMSLSLAPDTRLFV-SGACDA 206
Score = 74.5 bits (184), Expect = 6e-15
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 124 DDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 182
D I++ ++ + S + HT ++C F ++ + T S D T ALWD+
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETG 174
Query: 183 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
+ +F H ++ + +P + + S D +WD+ + G + T
Sbjct: 175 QQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV-REGMCRQT 221
Score = 69.5 bits (171), Expect = 3e-13
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 121 SVADDQKLMIWDTRSHNVS----KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
D L V + T+ H A++ + + S + + S D + +
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLL-LSASQDGKLII 81
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
WD K+H+ + ++P + +A G D +++L
Sbjct: 82 WDSYTTN-KVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLK 127
Score = 69.5 bits (171), Expect = 3e-13
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 117 SLFGSVADDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 175
+ F + +DD ++D R+ + SH D + +SF+ + G D
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSH--DNIICGITSVSFSKSGRLL-LAGYDDFNCN 295
Query: 176 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
+WD H + + + + + +A+ D L +W+
Sbjct: 296 VWDALKADR-AGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 78.8 bits (195), Expect = 3e-16
Identities = 20/161 (12%), Positives = 56/161 (34%), Gaps = 19/161 (11%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKP--SHTVDAHTAEVNCLSFNP---YSEYILATGSADK 172
+F +V ++ +++ S + S+ ++ S +LA +
Sbjct: 37 VFATV-GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95
Query: 173 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
+ + + ++ + + H + I ++++ P + +L S D L +W++ +
Sbjct: 96 IIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAI 153
Query: 233 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
GH ++ ++ I S D+
Sbjct: 154 ----------FGGVEGHRDEVLSADYDLLGEK-IMSCGMDH 183
Score = 76.9 bits (190), Expect = 1e-15
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 9/138 (6%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN-- 181
+ I + + + H +N L F+P +L + S D + LW+++
Sbjct: 93 SRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149
Query: 182 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST-EDAEDGPP 240
L E H+DE+ + + S G D L +W ++ + +++ D P
Sbjct: 150 LVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNP 207
Query: 241 ELLFI-HGGHTAKISDFS 257
DFS
Sbjct: 208 NKTNRPFISQKIHFPDFS 225
Score = 71.9 bits (177), Expect = 6e-14
Identities = 20/136 (14%), Positives = 53/136 (38%), Gaps = 24/136 (17%)
Query: 148 HTAEVNCLSFNPYS---EYILATGSADKTVALWDLRN----LKLKLHSFESHKDEIFQVQ 200
H + + FN +S + ++ V L++ + L+ + + +
Sbjct: 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 76
Query: 201 WSP---HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 257
W+ + +LA +G+ + + + + ++ GH I++
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINPIT-MQCIKH-----------YV--GHGNAINELK 122
Query: 258 WNPNEPWVICSVSEDN 273
++P +P ++ SVS+D+
Sbjct: 123 FHPRDPNLLLSVSKDH 138
Score = 69.6 bits (171), Expect = 3e-13
Identities = 24/194 (12%), Positives = 66/194 (34%), Gaps = 32/194 (16%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
++ +H +L SV+ D L +W+ ++ + V+ H EV ++ E I +
Sbjct: 120 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI-MS 178
Query: 168 GSADKTVALWDLRNLKLK---------------------------LHSFESHKDEIFQVQ 200
D ++ LW + + ++ + + H++ + V+
Sbjct: 179 CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238
Query: 201 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 260
W ++ S + + W K+ ++ + +L I ++
Sbjct: 239 WLG---DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM 295
Query: 261 NEP-WVICSVSEDN 273
+ ++ ++
Sbjct: 296 DFWQKMLALGNQVG 309
Score = 65.4 bits (160), Expect = 8e-12
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 39/169 (23%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
QK+ D T D H V+C+ + ++ + S + + W
Sbjct: 212 RPFISQKIHFPDF---------STRDIHRNYVDCVRWLGD---LILSKSCENAIVCWKPG 259
Query: 181 NLKLK-------------LHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKI 226
++ L F+ + +I+ +++S +LA +L+VWDL
Sbjct: 260 KMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL--- 316
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFS--WNPNEPWVICSVSEDN 273
+ ED H + ++ + +I +V +D
Sbjct: 317 -------EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI-AVCDDA 357
Score = 64.2 bits (157), Expect = 2e-11
Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 28/135 (20%)
Query: 115 HESLFGSVA----------DDQKLMIWDTRSHNVSKPS-----------HTVDAHTAEVN 153
H + V + ++ W D ++
Sbjct: 230 HRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW 289
Query: 154 CLSFNPYSEY-ILATGSADKTVALWDLRN---LKLKLHSFESHK--DEIFQVQWSPHNET 207
+ F+ +LA G+ + +WDL K K + HK I Q +S + +
Sbjct: 290 YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSS 348
Query: 208 ILASSGTDRRLHVWD 222
IL + D + WD
Sbjct: 349 ILIAVCDDASIWRWD 363
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 79.2 bits (196), Expect = 3e-16
Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 19/164 (11%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ + + D+ + AH +E+ L F P E + + S D + +W ++
Sbjct: 114 LGTTEGDIKVLDSNFN---LQREIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIWSVK 169
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP- 239
+ + H+ + + + S+ D + +W+ G T + ++ P
Sbjct: 170 DGSN-PRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPH 226
Query: 240 ----------PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+H T+K ++ + +VI +
Sbjct: 227 DGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI-AGHVSG 269
Score = 74.6 bits (184), Expect = 9e-15
Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ + + + S + T N L+ + + + G + +A WDLR
Sbjct: 264 AGHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321
Query: 181 NLKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ + + + I V ++ + SSG D + + +S E + + P
Sbjct: 322 SPECPVGEFLINEGTPINNVYFAA--GALFVSSGFDTSIKLDIISD-PESERPAIEFETP 378
Query: 240 PELLFIHGGHTAKISDFSWNPNEPW---VICSVSEDNI 274
L+ + +S F + ++ V+ +
Sbjct: 379 TFLV----SNDDAVSQFCYVSDDESNGEVLEVGKNNFC 412
Score = 73.8 bits (182), Expect = 2e-14
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 22/153 (14%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
D +++T + + + G+ + + + D
Sbjct: 73 KARLDGHDFLFNTIIRD----GSKMLKRADYTAVDTAKLQMRRF-ILGTTEGDIKVLDSN 127
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
++H EI ++++ P E + SS D +L +W +DG
Sbjct: 128 FNLQ-REIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIW------------SVKDG-- 171
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
GH A ++D + + S S D
Sbjct: 172 SNPRTLIGHRATVTDIAIIDRGRN-VLSASLDG 203
Score = 69.6 bits (171), Expect = 5e-13
Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 202
+ T++ N L F Y +Y+ G + + ++ + + + +
Sbjct: 241 QLHEISTSKKNNLEFGTYGKYV-IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD 299
Query: 203 PHNETILASSGTDRRLHVWDLS 224
+N + + + L WDL
Sbjct: 300 GNNANYIYAGYENGMLAQWDLR 321
Score = 63.8 bits (156), Expect = 3e-11
Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 13/114 (11%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ ++ L WD RS + +N + F + + + D ++ L +
Sbjct: 308 AGYENGMLAQWDLRSPE-CPVGEFLINEGTPINNVYFAAGA--LFVSSGFDTSIKLDIIS 364
Query: 181 NLK----LKLHS----FESHKDEIFQVQWSPHNETI--LASSGTDRRLHVWDLS 224
+ + S+ D + Q + +E+ + G + +++LS
Sbjct: 365 DPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418
Score = 59.9 bits (146), Expect = 5e-10
Identities = 16/159 (10%), Positives = 42/159 (26%), Gaps = 25/159 (15%)
Query: 121 SVADDQKLMIWDTRS---HNVSKPSHTVDAHTAEVNCL---SFNPYSEYILATGSADKTV 174
D+ + + + + V ++ V+ +F ++ D
Sbjct: 22 EENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHL-YKARLDGHD 80
Query: 175 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 234
L++ D T+ + V D + ++ +
Sbjct: 81 FLFNTIIRDGS--KMLKRADYTAVDTAKLQMRRF-ILGTTEGDIKVLDSNF-NLQREIDQ 136
Query: 235 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
H ++I+ + P+ + S S+D
Sbjct: 137 -------------AHVSEITKLKFFPSGEA-LISSSQDM 161
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 78.0 bits (193), Expect = 6e-16
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 21/154 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S D+K M+WD RS + + H ++VN + + P + A+GS D T L+DLR
Sbjct: 215 SGGCDKKAMVWDMRSG---QCVQAFETHESDVNSVRYYPSGDAF-ASGSDDATCRLYDLR 270
Query: 181 NLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ + ++S ES V +S + +L + D ++VWD+ K G S
Sbjct: 271 ADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLK-GSRVSI------- 321
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
LF GH ++S +P+ CS S D+
Sbjct: 322 ---LF---GHENRVSTLRVSPDGTA-FCSGSWDH 348
Score = 76.0 bits (188), Expect = 2e-15
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 120 GSVADDQKLMIWDTRSH---NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
G D K ++ N++ +V HT ++ SF I T S D T AL
Sbjct: 124 GG--LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI-LTASGDGTCAL 180
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDL 223
WD+ + +L L SF H ++ + +P S G D++ VWD+
Sbjct: 181 WDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Score = 74.5 bits (184), Expect = 7e-15
Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 25/159 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D K+++WD+ + + H V V ++ P I A G D +++ L
Sbjct: 81 SSSQDGKVIVWDSFT---TNKEHAVTMPCTWVMACAYAPSGCAI-ACGGLDNKCSVYPLT 136
Query: 181 NLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 235
K + S H + + ++ ++ + ++ D +WD+ G+ +
Sbjct: 137 FDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVES-GQLLQS--- 191
Query: 236 EDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVSEDN 273
F GH A + P+E S D
Sbjct: 192 --------FH--GHGADVLCLDLAPSETGNTFVSGGCDK 220
Score = 72.6 bits (179), Expect = 3e-14
Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 23/161 (14%)
Query: 124 DDQKLMIWDTRSHNVS-----------KPSHTVDAHTAEVNCLSFNPYSEYILATGSADK 172
++++ + D H V+ K T+ H +V C+ + I + S D
Sbjct: 28 EEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRI-VSSSQDG 86
Query: 173 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
V +WD K H+ + ++P + +A G D + V+ L+ E
Sbjct: 87 KVIVWDSFTTN-KEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMA 144
Query: 233 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
HT +S S+ ++ ++ + S D
Sbjct: 145 --------AKKKSVAMHTNYLSACSFTNSDMQIL-TASGDG 176
Score = 64.1 bits (157), Expect = 2e-11
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 117 SLFGSVADDQKLMIWDTRSHN-VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 175
F S +DD ++D R+ V+ S ++ + + F+ S +L G D T+
Sbjct: 253 DAFASGSDDATCRLYDLRADREVAIYSK--ESIIFGASSVDFSL-SGRLLFAGYNDYTIN 309
Query: 176 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
+WD+ + H++ + ++ SP + T S D L VW
Sbjct: 310 VWDVLKGSR-VSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353
Score = 51.4 bits (124), Expect = 2e-07
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 144 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-------------NLKLKLHSFE 190
D S +E L ++ L D+ + + +
Sbjct: 3 ATDGLHENETLASLKSEAES-LKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 61
Query: 191 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
H +++ + W ++ + SS D ++ VWD
Sbjct: 62 GHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDS 93
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 78.5 bits (194), Expect = 6e-16
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 24/153 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S A D + +WD + HT+ HT V L F+ ++ +GS D ++ +WD+
Sbjct: 254 SGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSLQFD--GIHV-VSGSLDTSIRVWDVE 307
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+H+ H+ ++ IL S D + +WD+ K G+ T
Sbjct: 308 TGNC-IHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDI-KTGQCLQT-------- 354
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
L H + ++ +N N + + S+D
Sbjct: 355 --LQGPNKHQSAVTCLQFNKNF---VITSSDDG 382
Score = 73.9 bits (182), Expect = 2e-14
Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 21/155 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D + +WD + HT+ H + + + IL +G+AD TV +WD++
Sbjct: 294 SGSLDTSIRVWDVET---GNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIK 347
Query: 181 NLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 238
+ L H+ + +Q++ + +S D + +WDL K GE +
Sbjct: 348 TGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDL-KTGEFIRNLVTLE- 402
Query: 239 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
GG + + + V S +
Sbjct: 403 -------SGGSGGVVWRIRASNTKL-VCAVGSRNG 429
Score = 71.2 bits (175), Expect = 1e-13
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S +DD L +W + K T+ HT V I+ +GS D+T+ +W+
Sbjct: 134 SGSDDNTLKVWSAVT---GKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAE 187
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
+ +H+ H + + + S D L VWD+ G+
Sbjct: 188 TGEC-IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIET-GQCLHV 234
Score = 70.8 bits (174), Expect = 2e-13
Identities = 36/194 (18%), Positives = 58/194 (29%), Gaps = 30/194 (15%)
Query: 84 ILNISILFFEIIFTQNFPFPLSRQDVAWHLLHESLFG----SVADDQKLMIWDTRSHNVS 139
+ ++L+ E + PL + + + W
Sbjct: 52 LAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGEL--- 108
Query: 140 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 199
K + H V I +GS D T+ +W K L + H ++
Sbjct: 109 KSPKVLKGHDDHVIT-CLQFCGNRI-VSGSDDNTLKVWSAVTGKC-LRTLVGHTGGVWSS 165
Query: 200 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 259
Q + I+ S TDR L VW+ GE T L GHT+ + +
Sbjct: 166 QMRDN---IIISGSTDRTLKVWNAET-GECIHT---------L----YGHTSTVRCMHLH 208
Query: 260 PNEPWVICSVSEDN 273
+ S S D
Sbjct: 209 EK---RVVSGSRDA 219
Score = 69.2 bits (170), Expect = 6e-13
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
GS D+ L +W+ + + HT+ HT+ V C+ + + +GS D T+ +WD+
Sbjct: 175 GS--TDRTLKVWNAET---GECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDI 226
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+ LH H + VQ+ + + S D + VWD
Sbjct: 227 ETGQC-LHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPE 267
Score = 67.7 bits (166), Expect = 2e-12
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 22/127 (17%)
Query: 115 HESLFGSVA----------DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 164
H+SL + D + IWD ++ + + H + V CL FN
Sbjct: 318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NF 374
Query: 165 LATGSADKTVALWDLRNLK----LKLHSFESHKDEIFQVQWSPHNETILASSGTDR---- 216
+ T S D TV LWDL+ + L +++++ S + + A +
Sbjct: 375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEET 433
Query: 217 RLHVWDL 223
+L V D
Sbjct: 434 KLLVLDF 440
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 76.5 bits (189), Expect = 1e-15
Identities = 38/171 (22%), Positives = 60/171 (35%), Gaps = 30/171 (17%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY------------ILATG 168
+ D K+ + + + N + +DAH VN S+ P + TG
Sbjct: 118 VASSDGKVSVVEFKE-NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 169 SADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHNE--TILASSGTDRRLHVWDL 223
AD V +W + + + E H D + V WSP + +AS DR +W
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236
Query: 224 SKIGEEQSTEDAEDGPPE-LLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
D E GP + L + SW+ + V+ DN
Sbjct: 237 ----------DNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDN 276
Score = 75.7 bits (187), Expect = 2e-15
Identities = 38/183 (20%), Positives = 77/183 (42%), Gaps = 19/183 (10%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQW 201
+AH ++ + Y + +AT S+DKT+ ++++ KL + H+ +++V W
Sbjct: 3 VIANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 202 SPH-NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 260
+ TILAS D ++ +W E+G + +H H+A ++ W P
Sbjct: 62 AHPKFGTILASCSYDGKVMIW------------KEENGRWSQIAVHAVHSASVNSVQWAP 109
Query: 261 NEP-WVICSVSEDNIMQEYCDSTDSDTKTMRLDSIRSNGGISSTA-SPTASSTASESPTP 318
+E ++ S D + + T + +D+ G++S + +P E
Sbjct: 110 HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGT 167
Query: 319 TNS 321
S
Sbjct: 168 KES 170
Score = 74.2 bits (183), Expect = 5e-15
Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 18/144 (12%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF--NPYSEYILATGSADKTVALWDLRN 181
D+ + I++ K T+ H V + + + ILA+ S D V +W N
Sbjct: 29 SDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVMIWKEEN 86
Query: 182 LKL-KLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ ++ H + VQW+PH +L + +D ++ V + ++
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV------------EFKENG 134
Query: 240 PELLFIHGGHTAKISDFSWNPNEP 263
I H ++ SW P
Sbjct: 135 TTSPIIIDAHAIGVNSASWAPATI 158
Score = 72.3 bits (178), Expect = 2e-14
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 121 SVADDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTVALW 177
+ D + IW S + T++ H+ V ++++P +A+ S D+T +W
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
Query: 178 DLRN----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
N K L E D +++ WS + +LA SG D ++ +W + G+ +
Sbjct: 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGKWEPA 292
Score = 46.8 bits (112), Expect = 5e-06
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 108 DVAWH--LLHESLFGSVADDQKLMIW--DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
DVAW +L S SV+ D+ +IW D K + + S++
Sbjct: 209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN- 267
Query: 164 ILATGSADKTVALWD 178
+LA D V LW
Sbjct: 268 VLALSGGDNKVTLWK 282
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 77.7 bits (192), Expect = 1e-15
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 4/112 (3%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D + +W + + + + + A D V ++DL+
Sbjct: 305 SCSMDGSVRLWSLKQ---NTLLALSIVDGVPIFAGRISQDGQKY-AVAFMDGQVNVYDLK 360
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
L K S ++D I P + +S D + +
Sbjct: 361 KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412
Score = 73.8 bits (182), Expect = 2e-14
Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 10/125 (8%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
DV W + F + ++ P+ + H ++ L FN ++ + +
Sbjct: 211 DVEWV--DDDKFVIPGPKGAIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNKLL-LS 264
Query: 168 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 227
S D T+ +W N + F H I W ++ + S D + +W L +
Sbjct: 265 ASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDDK--VISCSMDGSVRLWSLKQ-N 320
Query: 228 EEQST 232
+
Sbjct: 321 TLLAL 325
Score = 68.1 bits (167), Expect = 1e-12
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 20/125 (16%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
G ++ +L +W+ + ++ H A + + +N +I + + LW++
Sbjct: 126 GV--ENGELRLWNKTG----ALLNVLNFHRAPIVSVKWNKDGTHI-ISMDVENVTILWNV 178
Query: 180 RN--LKLKLHSFESHKDEIFQVQWSPHNETI----------LASSGTDRRLHVWDLSKIG 227
+ + E+ I S G + V+ +++
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITE-K 237
Query: 228 EEQST 232
Sbjct: 238 TPTGK 242
Score = 66.5 bits (163), Expect = 4e-12
Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 38/176 (21%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
D + D V K + + ++NP E ILA G + L
Sbjct: 15 ERETQEDDTNSIDSSDDLDGFV-KILKEI-VKLDNIVSSTWNPLDESILAYGEKNSVARL 72
Query: 177 WD-------------------LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 217
LR+ S +++ + WS + + + +
Sbjct: 73 ARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSIVTGVENGE 131
Query: 218 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
L +W+ + G + H A I WN + I S+ +N
Sbjct: 132 LRLWNKT--GALLNV-------------LNFHRAPIVSVKWNKDGTH-IISMDVEN 171
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 77.3 bits (191), Expect = 1e-15
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ A+D+ + IWD + K + H ++ L + P + + +GS D+TV +WDLR
Sbjct: 140 TGAEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLR 195
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+ + D + V SP + +A+ DR + VWD G D+E+
Sbjct: 196 TGQC-SLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESG 252
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
GH + + + V+ S S D
Sbjct: 253 T------GHKDSVYSVVFTRDGQSVV-SGSLDR 278
Score = 72.6 bits (179), Expect = 4e-14
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD- 178
GS D+ + IWD R+ + S T+ V ++ +P +A GS D+ V +WD
Sbjct: 183 GS--GDRTVRIWDLRTG---QCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 179 -----LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 233
+ L + S HKD ++ V ++ + + S DR + +W+L + ++
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSK 295
Query: 234 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
G E+ +I GH + + N+ +++ S S+D
Sbjct: 296 TPNSGTCEVTYI--GHKDFVLSVATTQNDEYIL-SGSKDR 332
Score = 69.9 bits (172), Expect = 3e-13
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPS---------HTVDAHTAEVNCLSFNPYSEYILATGSAD 171
S + D+ + +W+ ++ N S T H V ++ EYI +GS D
Sbjct: 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI-LSGSKD 331
Query: 172 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLS 224
+ V WD ++ L + H++ + V + + A+ D + +W
Sbjct: 332 RGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 69.6 bits (171), Expect = 4e-13
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 16/146 (10%)
Query: 139 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK------LHSFESH 192
P + H+ + + S+ + +T + L N L LH H
Sbjct: 5 LVPYNQRANHSKPIPPFLLDLDSQSV-PDALKKQTNDYYILYNPALPREIDVELHKSLDH 63
Query: 193 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST-----EDAEDGPPELLFIHG 247
+ V++S + LA +G ++ V+ +S G + +D
Sbjct: 64 TSVVCCVKFSN-DGEYLA-TGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSP 120
Query: 248 GHTAKISDFSWNPNEPWVICSVSEDN 273
I ++P+ + + + +ED
Sbjct: 121 SSDLYIRSVCFSPDGKF-LATGAEDR 145
Score = 68.8 bits (169), Expect = 7e-13
Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 19/129 (14%)
Query: 125 DQKLMIWDTRS---------HNVSKPS------HTVDAHTAEVNCLSFNPYSEYILATGS 169
++ ++ + + + + + + F+P +++ ATG+
Sbjct: 84 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL-ATGA 142
Query: 170 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 229
D+ + +WD+ N K+ + + H+ +I+ + + P + L S DR + +WDL G+
Sbjct: 143 EDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRT-GQC 199
Query: 230 QSTEDAEDG 238
T EDG
Sbjct: 200 SLTLSIEDG 208
Score = 59.9 bits (146), Expect = 4e-10
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 25/133 (18%)
Query: 121 SVADDQKLMIWDTRSHNVSKPS----HTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
Q + + + + H HT+ V C+ F+ EY+ ATG +KT +
Sbjct: 32 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL-ATGC-NKTTQV 89
Query: 177 WDLRN----LKLKLHS-------------FESHKDEIFQVQWSPHNETILASSGTDRRLH 219
+ + + +L S S I V +SP + LA+ DR +
Sbjct: 90 YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIR 148
Query: 220 VWDLSKIGEEQST 232
+WD+ +
Sbjct: 149 IWDIEN-RKIVMI 160
Score = 44.9 bits (107), Expect = 3e-05
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-----ILATGSADKTV 174
GS D+ ++ WD +S P + H V ++ S + ATGS D
Sbjct: 328 GS--KDRGVLFWDKKS---GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 382
Query: 175 ALWDLRNLK 183
+W + +
Sbjct: 383 RIWKYKKIA 391
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 76.5 bits (189), Expect = 1e-15
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Query: 121 SVADDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
+ + D+K+ + + + + AH + +++ P++ LA GS D TV++W
Sbjct: 29 TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL-LAAGSFDSTVSIWAK 87
Query: 180 RNLKLK------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 233
+ L E H++E+ V WS + LA+ D+ + +W+ + GEE
Sbjct: 88 EESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEE---- 142
Query: 234 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
E + + H+ + W+P+E ++ S S D+
Sbjct: 143 ------YECISVLQEHSQDVKHVIWHPSEA-LLASSSYDD 175
Score = 73.8 bits (182), Expect = 9e-15
Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 23/174 (13%)
Query: 115 HESLFGSVA------------DDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPYS 161
HE+ VA D+ + IW+T + + H+ +V + ++P
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165
Query: 162 EYILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETI-LASSGTDRRLH 219
+LA+ S D TV +W + + + H+ ++ + L S D +
Sbjct: 166 A-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224
Query: 220 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
VW +E ++ + H ++ + +W N +I SV D
Sbjct: 225 VWKYMG-DDEDDQQEWV----CEAILPDVHKRQVYNVAWGFNG--LIASVGADG 271
Score = 71.8 bits (177), Expect = 4e-14
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQV 199
++ + ++ F+ ILATGS D+ + L ++ + +HK I V
Sbjct: 8 KSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV 64
Query: 200 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 259
W PH ++LA+ D + +W +LL I GH ++ +W+
Sbjct: 65 AWRPHT-SLLAAGSFDSTVSIWAK-------EESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 260 PNEPWVICSVSEDN 273
+ + + + S D
Sbjct: 117 NDGYY-LATCSRDK 129
Score = 66.5 bits (163), Expect = 3e-12
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSH------TVDAHTAEVNCLSFNPYSEYILATGSADKTV 174
S +DD + +W + D H +V +++ ++A+ AD +
Sbjct: 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVL 273
Query: 175 ALWDLRNLKLK---LHSFESHKDEIFQVQW-SPHNETILASSGTDRRLHVWDL 223
A+++ + + K + EI V+W + +TILA+ G D ++ W L
Sbjct: 274 AVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
Score = 52.6 bits (127), Expect = 1e-07
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLS-FNPYSEYIL 165
+VAW L SV D L +++ + E+N + + IL
Sbjct: 255 NVAWG--FNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTIL 312
Query: 166 ATGSADKTVALWDL 179
ATG D V W L
Sbjct: 313 ATGGDDGIVNFWSL 326
Score = 41.4 bits (98), Expect = 4e-04
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 186 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 245
+ S + +K++I+ +S ILA+ TDR++ + + D L
Sbjct: 7 IKSLKLYKEKIWSFDFSQ---GILATGSTDRKIKLVSVKY--------DDFTLIDVLDE- 54
Query: 246 HGGHTAKISDFSWNPNEPWVICSVSEDN 273
H I +W P+ + + S D+
Sbjct: 55 -TAHKKAIRSVAWRPHTSL-LAAGSFDS 80
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 76.6 bits (189), Expect = 2e-15
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQW 201
+AH ++ + Y + LAT S+DKT+ ++++ KL + H+ +++V W
Sbjct: 5 VIANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 63
Query: 202 SPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 260
+ TILAS D ++ +W E+G + +H H+A ++ W P
Sbjct: 64 AHPKFGTILASCSYDGKVLIW------------KEENGRWSQIAVHAVHSASVNSVQWAP 111
Query: 261 NEP-WVICSVSEDN 273
+E ++ S D
Sbjct: 112 HEYGPLLLVASSDG 125
Score = 75.0 bits (185), Expect = 5e-15
Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 28/170 (16%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY------------ILATG 168
+ D K+ + + + N + +DAH VN S+ P + TG
Sbjct: 120 VASSDGKVSVVEFKE-NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178
Query: 169 SADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNE--TILASSGTDRRLHVWDL 223
AD V +W + + E H D + V WSP + LAS DR +W
Sbjct: 179 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238
Query: 224 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
++ + + L + SW+ + + DN
Sbjct: 239 ---------DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA-LSGGDN 278
Score = 75.0 bits (185), Expect = 6e-15
Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY--ILATGSADKTVALWDLRN 181
D+ + I++ K T+ H V + + ++ ILA+ S D V +W N
Sbjct: 31 SDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN 88
Query: 182 LKL-KLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ ++ H + VQW+PH +L + +D ++ V + ++
Sbjct: 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV------------EFKENG 136
Query: 240 PELLFIHGGHTAKISDFSWNPNEP 263
I H ++ SW P
Sbjct: 137 TTSPIIIDAHAIGVNSASWAPATI 160
Score = 71.6 bits (176), Expect = 7e-14
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 124 DDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSE--YILATGSADKTVALWDLR 180
D + IW S + T++ H+ V ++++P LA+ S D+T +W
Sbjct: 180 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239
Query: 181 N----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 236
N K L E D +++ WS + +LA SG D ++ +W + G+ + +
Sbjct: 240 NEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 298
Query: 237 DGP 239
G
Sbjct: 299 QGG 301
Score = 54.2 bits (131), Expect = 3e-08
Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 19/129 (14%)
Query: 108 DVAWH--LLHESLFGSVADDQKLMIW--DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
DVAW +L S SV+ D+ +IW D K + + S++ S
Sbjct: 211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGN 269
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+LA D V LW + E + +V S G +D
Sbjct: 270 VLALSGGDNKVTLWK--------ENLEGKWEPAGEVHQGG-----GGSGGGGATSKEFD- 315
Query: 224 SKIGEEQST 232
E
Sbjct: 316 GPCQNEIDL 324
Score = 36.1 bits (84), Expect = 0.018
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 186 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 245
+ +H + I + LA+ +D+ + ++++ E +L+
Sbjct: 4 VVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEV------------EGETHKLIDT 50
Query: 246 HGGHTAKISDFSWNPNEP-WVICSVSEDN 273
GH + W + ++ S S D
Sbjct: 51 LTGHEGPVWRVDWAHPKFGTILASCSYDG 79
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 76.3 bits (187), Expect = 2e-15
Identities = 23/167 (13%), Positives = 52/167 (31%), Gaps = 13/167 (7%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
L + D L +++ S + S A++ + F + Y + D+TV
Sbjct: 183 LLLALYSPDGILDVYNLSSPDQ-ASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVC 239
Query: 177 WDLRN----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
+DLR L ++ K + ++A S L ++ K + +
Sbjct: 240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299
Query: 233 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYC 279
++ TA +D + + + ++
Sbjct: 300 DEESA------LCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVA 340
Score = 67.5 bits (164), Expect = 2e-12
Identities = 19/155 (12%), Positives = 46/155 (29%), Gaps = 17/155 (10%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-SEYILATGSADKTVALWDL 179
+ ++ I D++++ V + E+ + + + T+
Sbjct: 99 LLYPGNQITILDSKTNKVLREIEV--DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ + E + +LA D L V++LS ++ S+
Sbjct: 157 EDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSS-PDQASS------- 207
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
AKI + + N W + + +
Sbjct: 208 ----RFPVDEEAKIKEVKFADNGYW-MVVECDQTV 237
Score = 42.8 bits (100), Expect = 1e-04
Identities = 15/113 (13%), Positives = 40/113 (35%), Gaps = 11/113 (9%)
Query: 122 VADDQKLMIWDTRSHNVSK--PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
V DQ ++ +D R + P++T+ + + ++A + ++ ++
Sbjct: 231 VECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290
Query: 180 RNLKLKLHSFE--------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
K K + + S + + + I A T+ ++ L+
Sbjct: 291 DK-KTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVALT 342
Score = 37.0 bits (85), Expect = 0.009
Identities = 10/118 (8%), Positives = 28/118 (23%), Gaps = 20/118 (16%)
Query: 160 YSEYILATGSADKTVALWDLRNLK----LKLHSFESHKDEIFQVQWSPHNETILASSGTD 215
Y +++ D + L++ K + + + + + P N +L
Sbjct: 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYP--G 103
Query: 216 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV-ICSVSED 272
++ + D + I +I +
Sbjct: 104 NQITILDSKTNKVLRE-------------IEVDSANEIIYMYGHNEVNTEYFIWADNR 148
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 77.2 bits (189), Expect = 2e-15
Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 29/182 (15%)
Query: 108 DVAWHLLHES-----LFGSVADDQKLMIWDTRSHN--------VSKPSHTVDAHTAEVNC 154
D+ WH + V+ + + + + KPS T+ + +
Sbjct: 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITT 271
Query: 155 LSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV--QWSPHNETILASS 212
F + + G + VA +DL + ++ + H I V +S +T++++
Sbjct: 272 FDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329
Query: 213 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 272
D ++++ D + + + + P I S
Sbjct: 330 AVDGYFYIFNPK------------DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGAS 377
Query: 273 NI 274
++
Sbjct: 378 SL 379
Score = 56.4 bits (135), Expect = 8e-09
Identities = 17/160 (10%), Positives = 39/160 (24%), Gaps = 25/160 (15%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
V + + L +R+ H + + + + + +
Sbjct: 359 VPVVYCP-QIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIGVSRLHPMV-L 413
Query: 167 TGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
GSAD ++ + + L K S +++ +S ++ S +
Sbjct: 414 AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYE-------- 465
Query: 224 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 263
I I+ WN
Sbjct: 466 --------VYPLTVNDVSKAKIDAHGIN-ITCTKWNETSA 496
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 75.4 bits (186), Expect = 6e-15
Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 26/155 (16%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
GS D L++WD K + + HT + ++ + + S D T+ +WDL
Sbjct: 286 GS--YDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRC-ISASMDTTIRIWDL 339
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
N +L +++ + H + ++ S L S+ D + WD + + +
Sbjct: 340 ENGEL-MYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAND-YSRKFS------- 387
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
HT + ++ ++ ++ S SE+
Sbjct: 388 -------YHHTNLSAITTFYVSDNILV-SGSENQF 414
Score = 73.4 bits (181), Expect = 3e-14
Identities = 40/166 (24%), Positives = 62/166 (37%), Gaps = 25/166 (15%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
G+ DD+ + ++D+ + K + H V L + IL +GS D+TV +WD+
Sbjct: 138 GA--DDKMIRVYDSIN---KKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDI 190
Query: 180 RNLKLKLHSFESHKDEI--FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 237
+ H FE H + + N + + D LHVW L K E
Sbjct: 191 KKGCC-THVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPK-ESSVPDHGEEH 247
Query: 238 GPPELLFIHG----------GHTAKISDFSWNPNEPWVICSVSEDN 273
P + GH A + S + V+ S S DN
Sbjct: 248 DYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVV-SGSYDN 290
Score = 61.1 bits (149), Expect = 2e-10
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 20/122 (16%)
Query: 115 HESLFGSVA----------DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 164
H +L G + D + WD ++ H HT +F S+ I
Sbjct: 351 HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH----HTNLSAITTFYV-SDNI 405
Query: 165 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWD 222
L +GS + +++LR+ KL + D+I+ V + +T++A+ L + D
Sbjct: 406 LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILD 462
Query: 223 LS 224
S
Sbjct: 463 FS 464
Score = 59.2 bits (144), Expect = 1e-09
Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 48/178 (26%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS--FNPYSEYILATGSADKTVALW 177
GS D+ + +WD + +H + H + V CL +YI TGS D T+ +W
Sbjct: 179 GS--TDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYI-VTGSRDNTLHVW 232
Query: 178 DLRNLKLK----------------------LHSFESHKDEIFQVQWSPHNETILASSGTD 215
L + H + V S H I+ S D
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH-GNIVVSGSYD 289
Query: 216 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
L VWD+++ + GHT +I ++ S S D
Sbjct: 290 NTLIVWDVAQ-MKCLYILS-------------GHTDRIYSTIYDHERKR-CISASMDT 332
Score = 55.7 bits (135), Expect = 1e-08
Identities = 9/107 (8%), Positives = 30/107 (28%), Gaps = 6/107 (5%)
Query: 126 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK 185
+KL+I + ++++ ++ L+ + W +
Sbjct: 57 KKLLISENFVSPKG--FNSLNLKLSQKYPKLSQQ-DRLRLSFLENIFILKNWYNPKFVPQ 113
Query: 186 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
+ H + + + + D+ + V+D +
Sbjct: 114 RTTLRGHMTSVITC-LQFEDNYV-ITGADDKMIRVYDSIN-KKFLLQ 157
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 74.1 bits (183), Expect = 7e-15
Identities = 34/157 (21%), Positives = 52/157 (33%), Gaps = 25/157 (15%)
Query: 124 DDQKLMIWDTRSHNVS--KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN 181
D+ L+ W + P + H+ V + Y + S DKT+ LWD+
Sbjct: 38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA-LSASWDKTLRLWDVAT 96
Query: 182 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 241
+ F HK ++ V I S D+ + VW + G+ +T
Sbjct: 97 GET-YQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIK--GQCLATLL------- 145
Query: 242 LLFIHGGHTAKISDFSWNPNEPWV-----ICSVSEDN 273
GH +S PNE I S D
Sbjct: 146 ------GHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Score = 71.0 bits (175), Expect = 7e-14
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-----ILATGSADKTV 174
GS D+ + +W + + T+ H V+ + P + + + DK V
Sbjct: 125 GS--RDKTIKVWTIKG----QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 175 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 234
W+L ++ F H I + SP + T++AS+G D + +W+L+ + T
Sbjct: 179 KAWNLNQFQI-EADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA-KKAMYTLS 235
Query: 235 AED 237
A+D
Sbjct: 236 AQD 238
Score = 67.5 bits (166), Expect = 1e-12
Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
S D+ L +WD + + H ++V + + + I +GS DKT+ +W +
Sbjct: 83 AS--WDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTI 136
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNE-----TILASSGTDRRLHVWDLSKIGEEQSTED 234
+ + L + H D + QV+ P+ + + S+G D+ + W+L++ + ++
Sbjct: 137 KG-QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEAD-- 191
Query: 235 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
GH + I+ + +P+ I S +D
Sbjct: 192 -----------FIGHNSNINTLTASPDGTL-IASAGKDG 218
Score = 65.2 bits (160), Expect = 6e-12
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK----LHSFESHKDEIFQ 198
T++ H V L+ + +L + S DKT+ W L K + SF+ H +
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 199 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
+ + S+ D+ L +WD++ GE
Sbjct: 71 CTLTA-DGAYALSASWDKTLRLWDVAT-GETYQR 102
Score = 62.5 bits (153), Expect = 5e-11
Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD-- 178
S D ++M+W+ + K +T+ A EV L+F+P Y LA + + ++
Sbjct: 213 SAGKDGEIMLWNLAA---KKAMYTLSAQD-EVFSLAFSPNR-YWLAAAT-ATGIKVFSLD 266
Query: 179 ----LRNLKLKLHS-FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+ +L+ + ++ + + WS + L + TD + VW +
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQVM 316
Score = 44.4 bits (106), Expect = 4e-05
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 186 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 245
+ E H + + S +L S+ D+ L W L + +D + G P F
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-------TGDDQKFGVPVRSFK 62
Query: 246 HGGHTAKISDFSWNPNEPWVICSVSEDN 273
GH+ + D + + + S S D
Sbjct: 63 --GHSHIVQDCTLTADGAY-ALSASWDK 87
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 74.1 bits (182), Expect = 8e-15
Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 18/170 (10%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
+ + +++ D S + + A + Y + L
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIG---SPSFQALTNNEANLGICRICKYGDDKLIA 117
Query: 168 GSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPH-NETILASSGTDRRLHVWDL 223
S D + + D RN + + + S+ ++ ++ N + L + ++ + L
Sbjct: 118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177
Query: 224 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
++ T G +I D + P E S D
Sbjct: 178 PLCEDDNGT-----------IEESGLKYQIRDVALLPKEQEGYACSSIDG 216
Score = 72.2 bits (177), Expect = 5e-14
Identities = 21/202 (10%), Positives = 60/202 (29%), Gaps = 13/202 (6%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 183
D L ++ + + + C +F ++ + G+ + DL
Sbjct: 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90
Query: 184 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 243
+ +++ + + + + L ++ D + V D G+ +
Sbjct: 91 S-FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD----------GVIAV 139
Query: 244 FIHGGHTAKISD--FSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRLDSIRSNGGIS 301
+ K+ + F+ + N +I ++ + + D T+ ++
Sbjct: 140 KNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV 199
Query: 302 STASPTASSTASESPTPTNSVH 323
+ A S +V
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVE 221
Score = 58.3 bits (141), Expect = 1e-09
Identities = 12/124 (9%), Positives = 32/124 (25%), Gaps = 17/124 (13%)
Query: 152 VNCLSFNPYSEYILATGSADKTVALWDL--RNLKLKLHSFESHKDEIFQVQWSPHNETIL 209
++ + P L S D ++ ++ + + L +K + + + + +
Sbjct: 14 ISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 210 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 269
+ DL Q + A + + +
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQ--------------ALTNNEANLGICRICKYGDDKLIAA 118
Query: 270 SEDN 273
S D
Sbjct: 119 SWDG 122
Score = 46.8 bits (111), Expect = 8e-06
Identities = 16/155 (10%), Positives = 49/155 (31%), Gaps = 28/155 (18%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
++ ++ + + ++ ++ P + A S D VA+
Sbjct: 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224
Query: 181 N-----LKLKLHSFESHKDE---------IFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
+ K +F H+ + +++SP ++ + ++G+D + W+L
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL-YTAGSDGIISCWNL--- 280
Query: 227 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 261
++ + + + + N
Sbjct: 281 ----------QTRKKIKNFAKFNEDSVVKIACSDN 305
Score = 43.7 bits (103), Expect = 6e-05
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 109 VAWHLLHESLFGSVADDQKLMIW---DTRSHNVSKPSHTVDAHTAE---------VNCLS 156
VA + + + D ++ + D S H VN +
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258
Query: 157 FNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 212
F+P +++ T +D ++ W+L+ K + + ++D + ++ S N LA+S
Sbjct: 259 FSPRHKFL-YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD-NILCLATS 312
Score = 37.5 bits (87), Expect = 0.006
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 12/82 (14%)
Query: 192 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 251
KD I ++ P +L +S D L V+ A++ +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSW-DGSLTVYKFD--------IQAKNVDLLQSL---RYKH 57
Query: 252 KISDFSWNPNEPWVICSVSEDN 273
+ ++ N I +
Sbjct: 58 PLLCCNFIDNTDLQIYVGTVQG 79
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 74.1 bits (183), Expect = 9e-15
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 20/153 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ L IWD + + + + L+ +P S+ + +D +A+WDL
Sbjct: 114 VGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDSKVC-FSCCSDGNIAVWDLH 171
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
N L + F+ H D + S + T L + G D + WDL + G +
Sbjct: 172 NQTL-VRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE-GRQLQQH------- 221
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
T++I + P W+ E +
Sbjct: 222 -------DFTSQIFSLGYCPTGEWLA-VGMESS 246
Score = 67.1 bits (165), Expect = 2e-12
Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 17/136 (12%)
Query: 111 WHLLHESLFGSVA---DDQKL--------MIWDTRSHNVSKP--SHTVDAHTAEVNCLSF 157
L H + +V + + +WD P +
Sbjct: 46 NTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105
Query: 158 NPYSEYILATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDR 216
P + G T+++WDL ++ S + + SP + + S +D
Sbjct: 106 LPDGCTL-IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDG 163
Query: 217 RLHVWDLSKIGEEQST 232
+ VWDL
Sbjct: 164 NIAVWDLHN-QTLVRQ 178
Score = 65.2 bits (160), Expect = 8e-12
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 26/154 (16%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
G D + WD R + D T+++ L + P E++ A G V + +
Sbjct: 201 GG--LDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWL-AVGMESSNVEVLHV 253
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
K + H+ + ++++ + S+G D L+ W G
Sbjct: 254 N--KPDKYQLHLHESCVLSLKFAYCGKWF-VSTGKDNLLNAWRT-PYGASIFQS------ 303
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
++ + + ++ +++ + S D
Sbjct: 304 --------KESSSVLSCDISVDDKYIV-TGSGDK 328
Score = 61.4 bits (150), Expect = 1e-10
Identities = 9/103 (8%), Positives = 30/103 (29%), Gaps = 8/103 (7%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ + + + + + H + V L F ++ + D + W
Sbjct: 241 VGMESSNVEVLHVNKPDK----YQLHLHESCVLSLKFAYCGKWF-VSTGKDNLLNAWRTP 295
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+ S ++ + + D++ V+++
Sbjct: 296 YGASI--FQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335
Score = 53.7 bits (130), Expect = 4e-08
Identities = 13/126 (10%), Positives = 31/126 (24%), Gaps = 14/126 (11%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 207
+ + D + R+ + +++ H + + V S
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-INTLN-HGEVVCAVTISNPTRH 65
Query: 208 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 267
+ +G + VWD+ + P I P+ +
Sbjct: 66 V--YTGGKGCVKVWDI---------SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT-LI 113
Query: 268 SVSEDN 273
E +
Sbjct: 114 VGGEAS 119
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 75.4 bits (185), Expect = 1e-14
Identities = 47/283 (16%), Positives = 74/283 (26%), Gaps = 53/283 (18%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY------------ILATG 168
+ D K+ + + + N + +DAH VN S+ P + TG
Sbjct: 118 VASSDGKVSVVEFKE-NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 169 SADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHNE--TILASSGTDRRLHVWDL 223
AD V +W + + + E H D + V WSP + LAS DR +W
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236
Query: 224 SKIGEEQSTEDAEDGPPE-LLFIHGGHTAKISDFSWNPNEPWVICSVSEDN--------- 273
D E GP + L + SW+ + + DN
Sbjct: 237 ----------DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA-LSGGDNKVTLWKENL 285
Query: 274 --------IMQEYCDSTDSDTKTMRLDSIRSNGGISSTASPTASSTASESPTPTNSVHEK 325
+ + + T + I S +
Sbjct: 286 EGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTA 345
Query: 326 NYWQGLVLFDILVCEEQRQLLGTEEESSDRHSSDNDTEDLNSI 368
+Y F L S TE
Sbjct: 346 SYT--FAKFS----TGSMLLTKDIVGKSGVSIKRLPTELQRKF 382
Score = 71.9 bits (176), Expect = 1e-13
Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 18/141 (12%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVN--CLSFNPYSEYILATGSADKTVALWDLRN 181
D+ + I++ K T+ H V + + ILA+ S D V +W N
Sbjct: 29 SDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEEN 86
Query: 182 LKL-KLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ ++ H + VQW+PH +L + +D ++ V + ++
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV------------EFKENG 134
Query: 240 PELLFIHGGHTAKISDFSWNP 260
I H ++ SW P
Sbjct: 135 TTSPIIIDAHAIGVNSASWAP 155
Score = 71.5 bits (175), Expect = 2e-13
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQW 201
+AH ++ + Y + LAT S+DKT+ ++++ KL + H+ +++V W
Sbjct: 3 VIANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 202 S-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 260
+ P TILAS D ++ +W E+G + +H H+A ++ W P
Sbjct: 62 AHPKFGTILASCSYDGKVLIW------------KEENGRWSQIAVHAVHSASVNSVQWAP 109
Query: 261 NEP-WVICSVSEDN 273
+E ++ S D
Sbjct: 110 HEYGPLLLVASSDG 123
Score = 51.5 bits (123), Expect = 4e-07
Identities = 42/281 (14%), Positives = 76/281 (27%), Gaps = 38/281 (13%)
Query: 108 DVAWH--LLHESLFGSVADDQKLMIW--DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 163
DVAW +L S SV+ D+ +IW D K + + S++
Sbjct: 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN- 267
Query: 164 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+LA D V LW + E + +V ++ S G +D
Sbjct: 268 VLALSGGDNKVTLWK--------ENLEGKWEPAGEV-----HQGGGGSGGGGATSKEFDG 314
Query: 224 SKI--------GEEQSTEDAEDGPPELLFIHGGHTAKISD------FSWNPNEPWVICSV 269
++A+ E F AK S I +
Sbjct: 315 PCQNEIDLLFSECNDEIDNAKLIMKERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRL 374
Query: 270 SEDNIMQEYCDSTDSDTKTMRLDSIRSNGGISSTASPTASSTASESPTPTNSVHEKNYWQ 329
+ + D D + ++ S ++ + + N W+
Sbjct: 375 PTELQRKFLFDDVYLDKEIEKVTIEARKSNPYPQISESSLLFKDALDYMEKTSSDYNLWK 434
Query: 330 -GLVLFDILVCEEQRQLLGTEEESSDRHSSDNDTEDLNSIW 369
+LFD T+ + + + W
Sbjct: 435 LSSILFD-----PVSYPYKTDNDQVKMALLKKERHCRLTSW 470
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 72.5 bits (179), Expect = 3e-14
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
GS D L +WD + + HT +V ++F+ + I +GS DKT+ LW+
Sbjct: 104 GS--WDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTIKLWNT 157
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNET-ILASSGTDRRLHVWDLSKIGEEQST 232
+ ESH + + V++SP++ I+ S G D+ + VW+L+ + ++
Sbjct: 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTN 210
Score = 70.2 bits (173), Expect = 2e-13
Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 14/150 (9%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 183
D+ + +W+ + K HT +N ++ +P A+G D LWDL K
Sbjct: 193 WDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWDLNEGK 248
Query: 184 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 243
L++ + D I + +SP+ + + T + +WDL E
Sbjct: 249 H-LYTLDGG-DIINALCFSPNRYWL--CAATGPSIKIWDLEG-KIIVDELKQEVISTSS- 302
Query: 244 FIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ + +W+ + + + DN
Sbjct: 303 ---KAEPPQCTSLAWSADGQTLF-AGYTDN 328
Score = 69.1 bits (170), Expect = 4e-13
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 9/118 (7%)
Query: 120 GSVADDQKLMIWDTRSHNVSKP-SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 178
G D ++ T+ H V ++ P ++ + S DKT+ +W
Sbjct: 10 GV--DLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK 67
Query: 179 LRNLKLK----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
L + + H + V S + S D L +WDL+ G
Sbjct: 68 LTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTT-GTTTRR 123
Score = 66.8 bits (164), Expect = 2e-12
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S D + M+WD K +T+D +N L F+P Y L + ++ +WDL
Sbjct: 232 SGGKDGQAMLWDLNE---GKHLYTLDGGDI-INALCFSPNR-YWLCAAT-GPSIKIWDLE 285
Query: 181 NLKLK--------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+ S ++ + + WS + L + TD + VW ++
Sbjct: 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVT 336
Score = 58.3 bits (142), Expect = 2e-09
Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 13/112 (11%)
Query: 165 LATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
++G T L+ + + + + H + Q+ +P ++ S+ D+ + +W
Sbjct: 7 HSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMW 66
Query: 222 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
L + ++ G P+ GH+ +SD + + + S S D
Sbjct: 67 KL-------TRDETNYGIPQRALR--GHSHFVSDVVISSDGQF-ALSGSWDG 108
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 72.9 bits (179), Expect = 4e-14
Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 7/132 (5%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK----LKLHSFESHKDEIFQVQWSP 203
+ + +P L TGS + +W+L+ + + Q+ P
Sbjct: 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP 121
Query: 204 HNETILASSGTDRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 261
N A S D ++ V + + E + E L G + + ++
Sbjct: 122 -NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180
Query: 262 EPWVICSVSEDN 273
E ++ +++ +
Sbjct: 181 EKSLLVALTNLS 192
Score = 72.5 bits (178), Expect = 6e-14
Identities = 19/184 (10%), Positives = 52/184 (28%), Gaps = 31/184 (16%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRS--HNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
A + +D + IW+ + S ++ V ++ P + A
Sbjct: 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAF-A 127
Query: 167 TGSADKTVALWDL---------------RNLKLKLHSFESHKDEIFQVQWSPHNETILAS 211
S D + + + K+ L +F ++ + + +++L +
Sbjct: 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187
Query: 212 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 271
R+ ++D+ E + +S + + +
Sbjct: 188 LTNLSRVIIFDIRT-LERLQI-----------IENSPRHGAVSSICIDEECCV-LILGTT 234
Query: 272 DNIM 275
I+
Sbjct: 235 RGII 238
Score = 67.1 bits (164), Expect = 3e-12
Identities = 16/168 (9%), Positives = 43/168 (25%), Gaps = 27/168 (16%)
Query: 121 SVADDQKLMIWDTRSHNVSKPS-------------HTVDAHTAEVNCLSFNPYSEYILAT 167
+ D ++++ + + V +F + +L
Sbjct: 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187
Query: 168 GSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 225
+ V ++D+R L+ L E + + +L T + +WD+ +
Sbjct: 188 LTNLSRVIIFDIRTLER-LQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDI-R 244
Query: 226 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ F + + ++ S
Sbjct: 245 FNVLIRS---------WSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283
Score = 61.0 bits (148), Expect = 2e-10
Identities = 21/201 (10%), Positives = 51/201 (25%), Gaps = 52/201 (25%)
Query: 124 DDQKLMIWDTRSHN-VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 182
+ IWD R + + S A V F + I+ GS+ + +W+
Sbjct: 234 TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293
Query: 183 KLKLHSFESHKDEIFQVQWSP------------------------HNETILASSGTDRRL 218
++F + ++ + P N+ IL + +
Sbjct: 294 HC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSI 352
Query: 219 HVWDLSKI-----------------------GEEQSTEDAEDGPPELLFIHGGHTAKISD 255
++ L+++ + + H I+
Sbjct: 353 VMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS 412
Query: 256 --FSWNPNEPWVICSVSEDNI 274
P ++ + +
Sbjct: 413 ISTCEVDETPLLV-ACDNSGL 432
Score = 52.9 bits (127), Expect = 9e-08
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 16/137 (11%)
Query: 143 HTVDAHTAEV----NCLSFNPYSEYILATGSADKTVALWDLRNL--KLKLHSFESHKDEI 196
H + + + P G + V ++ NL KL E+ + I
Sbjct: 7 HHGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPNMGNLRGKLIATLMENEPNSI 66
Query: 197 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 256
SP L + + +W+L +I E L + ++ ++
Sbjct: 67 TSSAVSPGETPYLITGSDQGVIKIWNLKEI------IVGEVYSSSLTY---DCSSTVTQI 117
Query: 257 SWNPNEPWVICSVSEDN 273
+ PN S+D
Sbjct: 118 TMIPNFDA-FAVSSKDG 133
Score = 36.3 bits (84), Expect = 0.018
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 119 FGSVADDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTVAL 176
F L + + S H +N +S E +L + +
Sbjct: 376 FIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI 435
Query: 177 W 177
+
Sbjct: 436 F 436
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 71.5 bits (176), Expect = 8e-14
Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY--ILATGSADKTV 174
S+FGS D + D + + CLSF+P + L GS V
Sbjct: 16 SMFGSATTDNHNPMKDIE---------VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDV 66
Query: 175 ALWDLR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 233
W+++ + + + + H + V WS + + + ++ D+ +WDLS +
Sbjct: 67 RCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSS-NQAIQI- 123
Query: 234 DAEDGPPELLFIHGGHTAKISD--FSWNPNEPWVICSVSEDN 273
H A + + PN V+ + S D
Sbjct: 124 -------------AQHDAPVKTIHWIKAPNYSCVM-TGSWDK 151
Score = 64.2 bits (157), Expect = 2e-11
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 120 GSVADDQKLMIWDT----------RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 169
GS+ + + + H + + + VN ++F+P + AT
Sbjct: 234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL-ATVG 292
Query: 170 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+D + WD + KL + E I ++ N I A + + +
Sbjct: 293 SDGRFSFWDKDA-RTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHEF 344
Score = 63.8 bits (156), Expect = 2e-11
Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 22/127 (17%)
Query: 149 TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE-- 206
+ F + + + D + D+ S D I + +SP
Sbjct: 2 SLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVT-------SSPDDSIGCLSFSPPTLPG 54
Query: 207 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 266
L + + W++ G+ P+ HT + D W+ + +
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTI---------PKAQQ---MHTGPVLDVCWSDDGSK-V 101
Query: 267 CSVSEDN 273
+ S D
Sbjct: 102 FTASCDK 108
Score = 63.4 bits (155), Expect = 3e-11
Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 21/155 (13%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTVALWDL 179
+ + D+ +WD S+ + H A V + + Y + TGS DKT+ WD
Sbjct: 103 TASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
R+ + + + P ++A++ +R L V+ L E
Sbjct: 159 RSSNP-MMVLQLPERCYCADVIYPM--AVVATA--ERGLIVYQLENQPSEFRR------- 206
Query: 240 PELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDN 273
+ ++ + N+P S +
Sbjct: 207 --IESPLKHQHRCVA-IFKDKQNKPTGFALGSIEG 238
Score = 59.6 bits (145), Expect = 6e-10
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 183
+ W+ + HT V + ++ + T S DKT +WDL + +
Sbjct: 62 WANDVRCWEV-QDSGQTIPKAQQMHTGPVLDVCWSDDGSKV-FTASCDKTAKMWDLSSNQ 119
Query: 184 LKLHSFESHKDEIFQVQWSPH-NETILASSGTDRRLHVWDLS 224
H + + W N + + + D+ L WD
Sbjct: 120 AI--QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Score = 52.3 bits (126), Expect = 1e-07
Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 42/183 (22%)
Query: 105 SRQDVAWHLLHESLFGSVAD---------DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL 155
S + L E + + ++ L+++ + S+ + C+
Sbjct: 160 SSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQP-SEFRRIESPLKHQHRCV 218
Query: 156 SFNP---YSEYILATGSADKTVALWDL-------RNLKLKLHS-------FESHKDEIFQ 198
+ A GS + VA+ + N K H +
Sbjct: 219 AIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG 278
Query: 199 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 258
+ + P + T+ A+ G+D R W D + L IS +
Sbjct: 279 IAFHPVHGTL-ATVGSDGRFSFW------------DKDAR--TKLKTSEQLDQPISACCF 323
Query: 259 NPN 261
N N
Sbjct: 324 NHN 326
Score = 44.6 bits (106), Expect = 4e-05
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
+A+H +H +V D + WD + T + ++ FN I A
Sbjct: 278 GIAFHPVH-GTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQPISACCFNHNGN-IFAY 332
Query: 168 GSADKTVALWDLRNL----KLKLHSFESHKDEI 196
S+ + N + L + +E+
Sbjct: 333 ASSYDWSKGHEFYNPQKKNYIFLR---NAAEEL 362
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 70.9 bits (173), Expect = 2e-13
Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 28/227 (12%)
Query: 123 ADDQKLMIWDTRSHNVS-----KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
ADD ++ +W + S ++ T + F+P S S+ T+ L
Sbjct: 195 ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254
Query: 178 DLRNLKLKLHS---------------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
D+R L F I V++S ++ + + VWD
Sbjct: 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM--TRDYLSVKVWD 312
Query: 223 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS--WNPNEPWVICSVSEDNIMQEYCD 280
L+ T + L + F WN ++ + + S +N + +
Sbjct: 313 LNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRMFDR 371
Query: 281 STDSDTKTMRLDSIRSNGGISSTASPTASSTASESPTPTNSVHEKNY 327
+T D ++ R N + P + + SV ++
Sbjct: 372 NTKRDITL---EASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF 415
Score = 54.4 bits (130), Expect = 4e-08
Identities = 22/212 (10%), Positives = 61/212 (28%), Gaps = 50/212 (23%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRS-------------HNVSKPSHTVDAHTAEVNCL 155
+H + F + + + D R+ + ++ +
Sbjct: 232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDV 291
Query: 156 SFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKD---------------EIFQVQ 200
F+ Y+ T +V +WDL + +++ H+ + F+
Sbjct: 292 KFSHSGRYM-MTRD-YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349
Query: 201 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTED------------------AEDGPPEL 242
W+ + + + + ++D + + + E+
Sbjct: 350 WNGSDSVV-MTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEI 408
Query: 243 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
KI +W+P E + + + +N+
Sbjct: 409 SVDSLDFNKKILHTAWHPKENIIAVA-TTNNL 439
Score = 43.6 bits (102), Expect = 9e-05
Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 48/205 (23%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS-EYILAT 167
V + E+ S + + + +SH ++N + + P
Sbjct: 53 VIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112
Query: 168 GSADKTVALWDLRNLKLKLHSF-------------------------------------- 189
+ DKT+ LW + + +
Sbjct: 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172
Query: 190 -ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 248
+H I + + ET L++ D R+++W L + D + E
Sbjct: 173 ANAHTYHINSISINSDYETYLSAD--DLRINLWHLEITDRSFNIVDIKPANME------E 224
Query: 249 HTAKISDFSWNPNEPWVICSVSEDN 273
T I+ ++PN S
Sbjct: 225 LTEVITAAEFHPNSCNTFVYSSSKG 249
Score = 40.5 bits (94), Expect = 8e-04
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 26/127 (20%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ A + W V A ++ + FN E LATG V ++
Sbjct: 2 AGAGGGNDIQWCFS--QVKGAVDDDVAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQE 58
Query: 181 NLK-LKLHSFESHK---------------------DEIFQVQWSP-HNETILASSGTDRR 217
++ HS + ++I +++W P N S D+
Sbjct: 59 QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT 118
Query: 218 LHVWDLS 224
+ +W +S
Sbjct: 119 IKLWKIS 125
Score = 34.0 bits (77), Expect = 0.088
Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 15/161 (9%)
Query: 167 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 226
G+ W +K + + D I V+++ + +LA+ R+ ++ +
Sbjct: 2 AGAGGGNDIQWCFSQVKGAVDDDVAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQE 60
Query: 227 GEEQSTEDAEDGPPELLFIHGGH---------TAKISDFSWNPNEP-WVICSVSEDNIMQ 276
+ QS E H KI+ W P + + D ++
Sbjct: 61 NKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIK 120
Query: 277 EYCDSTDSDTKTMRLDSIRSNGGISSTASPTASSTASESPT 317
+ + R + PT +T
Sbjct: 121 LW----KISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVF 157
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 70.8 bits (174), Expect = 2e-13
Identities = 30/153 (19%), Positives = 66/153 (43%), Gaps = 18/153 (11%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D+ + +W+T + + T++ H + CL + ++ +GS+D T+ LWD+
Sbjct: 271 SASGDRTIKVWNTSTC---EFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIE 324
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
L E H++ + +++ + + S D ++ VWDL + +
Sbjct: 325 CGAC-LRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDL-----VAALDPRAPAGT 375
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
L H+ ++ ++ + I S S D+
Sbjct: 376 LCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDD 405
Score = 69.3 bits (170), Expect = 6e-13
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 20/121 (16%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
GS D + +WD ++ H V C+ F+ + +G+ D + +WDL
Sbjct: 312 GS--SDNTIRLWDIECG---ACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDL 363
Query: 180 RNLKLK--------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 231
L + H +F++Q +E + SS D + +WD
Sbjct: 364 VAALDPRAPAGTLCLRTLVEHSGRVFRLQ---FDEFQIVSSSHDDTILIWDF-LNDPAAQ 419
Query: 232 T 232
Sbjct: 420 A 420
Score = 67.3 bits (165), Expect = 2e-12
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
G D + IWD + + + HT V CL ++ ++ TGS+D TV +WD+
Sbjct: 149 GL--RDNTIKIWDKNT---LECKRILTGHTGSVLCLQYDER---VIITGSSDSTVRVWDV 200
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
++ L++ H + + +++ N ++ + DR + VWD++
Sbjct: 201 NTGEM-LNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMA 241
Score = 63.9 bits (156), Expect = 3e-11
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
GS D + +WD + + +T+ H V L FN ++ T S D+++A+WD+
Sbjct: 189 GS--SDSTVRVWDVNT---GEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDM 240
Query: 180 RNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
+ H+ + V + ++ + S+ DR + VW+ S
Sbjct: 241 ASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTS 284
Score = 60.4 bits (147), Expect = 4e-10
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 131 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE 190
W H++ + H + V CL ++ + + +G D T+ +WD L+
Sbjct: 116 WRCGRHSL-QRIHCRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLEC-KRILT 170
Query: 191 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
H + +Q ++E ++ + +D + VWD++ GE +T
Sbjct: 171 GHTGSVLCLQ---YDERVIITGSSDSTVRVWDVNT-GEMLNT 208
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 71.3 bits (175), Expect = 2e-13
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTVALWD 178
S D+ + +W+T S + H V+C+ F+P + + + S DKTV +W+
Sbjct: 490 AS--RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 179 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 232
L N KL + H + V SP + ++ AS G D + +WDL G++ +
Sbjct: 548 LSNCKL-RSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDL-AEGKKLYS 598
Score = 66.6 bits (163), Expect = 6e-12
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S + D +L +WD + + HT +V ++F+ + I + S D+T+ LW+
Sbjct: 447 SGSWDGELRLWDLAA---GVSTRRFVGHTKDVLSVAFSLDNRQI-VSASRDRTIKLWNTL 502
Query: 181 NLKLK--LHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQST 232
E H+D + V++SP + + S+ D+ + VW+LS + +ST
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRST 556
Score = 66.6 bits (163), Expect = 7e-12
Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 6/139 (4%)
Query: 98 QNFPFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF 157
N P + + + G D L T + T+ AHT V ++
Sbjct: 331 PNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIAT 390
Query: 158 NPYSEYILATGSADKTVALWDLRNLKLK----LHSFESHKDEIFQVQWSPHNETILASSG 213
+ I+ + S DK++ LW L H + V S + S
Sbjct: 391 PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGS 449
Query: 214 TDRRLHVWDLSKIGEEQST 232
D L +WDL+ G
Sbjct: 450 WDGELRLWDLAA-GVSTRR 467
Score = 60.9 bits (148), Expect = 5e-10
Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 27/124 (21%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
G D +++WD K ++++A++ ++ L F+P + Y L + + + +WDL
Sbjct: 579 GG--KDGVVLLWDLAE---GKKLYSLEANS-VIHALCFSP-NRYWLCAAT-EHGIKIWDL 630
Query: 180 RN----LKLKLHS--------------FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
+ LK+ + + WS + + L S TD + VW
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVW 689
Query: 222 DLSK 225
+ +
Sbjct: 690 GIGR 693
Score = 35.8 bits (83), Expect = 0.029
Identities = 13/154 (8%), Positives = 45/154 (29%), Gaps = 17/154 (11%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ + +++L ++ ++ + ++ Y E + A + + +
Sbjct: 268 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEEL-AKDPRIAAT-MENAQ 325
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETI-LASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
++ + + + V+ + N + + + + T
Sbjct: 326 KGEI-MPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGT------- 377
Query: 240 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
HT ++ + + +I S S D
Sbjct: 378 ------MRAHTDMVTAIATPIDNADIIVSASRDK 405
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 70.5 bits (173), Expect = 2e-13
Identities = 22/157 (14%), Positives = 58/157 (36%), Gaps = 11/157 (7%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 183
+ L + + + + + + + + ++ATG + TV + +L L+
Sbjct: 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR 218
Query: 184 L-----KLHSFESHKDEIFQVQWSPHNETILASS--GTDRRLHVWDLSKIGEEQSTEDAE 236
HS ++ + I V++SP + + + + +++ + GE +
Sbjct: 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET-EFGERIGSLSVP 277
Query: 237 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ H++ + S+N + +CS D
Sbjct: 278 THSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDG 313
Score = 62.8 bits (153), Expect = 7e-11
Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 21/130 (16%)
Query: 121 SVADDQKLMIWDT---RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT---V 174
+ ++ + I + R + H++ ++ + + F+P LA + +
Sbjct: 202 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL-LAIAHDSNSFGCI 260
Query: 175 ALWD------LRNLKLKLHSFES------HKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
L++ + +L + HS ++ H + + ++ ET L S+G D +L WD
Sbjct: 261 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWD 319
Query: 223 LSKIGEEQST 232
+ E +T
Sbjct: 320 VKT-KERITT 328
Score = 57.8 bits (140), Expect = 2e-09
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Query: 130 IWDTRS----------HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
+++T + S+ S AH++ V LSFN E L + D + WD+
Sbjct: 262 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDV 320
Query: 180 RNLKLKLHSFESHKDEIFQ----VQWSPHNETILASSGTDRRLHVW 221
+ + + + H D+I + H +++ D +
Sbjct: 321 KTKER-ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365
Score = 52.8 bits (127), Expect = 9e-08
Identities = 12/123 (9%), Positives = 30/123 (24%), Gaps = 24/123 (19%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY--ILATGSADKTVALWD 178
+D+ + + + H+ + L T +W
Sbjct: 98 ITREDETKKVIFEKLDLLDSDMKK---HSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154
Query: 179 LRN-----------------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
L+ + S + V S ++A+ + + +
Sbjct: 155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQIS 212
Query: 222 DLS 224
+LS
Sbjct: 213 ELS 215
Score = 50.5 bits (121), Expect = 5e-07
Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 21/148 (14%)
Query: 141 PSHTV-DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-----NLKLKLHSFESHKD 194
+ AH A++ +S + S D + +WD + N K K +S HK
Sbjct: 7 ATANAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 63
Query: 195 EIFQV-------QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 247
+ V + + ++A++ L + +++ E + + L
Sbjct: 64 GLHHVDVLQAIERDAFEL-CLVATTSFSGDLLFYRITREDETKKVIFEKLDL--LDSDMK 120
Query: 248 GHTAKISDFSWNPNEPW--VICSVSEDN 273
H+ + + + + +
Sbjct: 121 KHSFWALKWGASNDRLLSHRLVATDVKG 148
Score = 49.0 bits (117), Expect = 2e-06
Identities = 20/169 (11%), Positives = 44/169 (26%), Gaps = 30/169 (17%)
Query: 121 SVADDQKLMIWDTRSHNVSKP---SHTVDAHTAE-------------------VNCLSFN 158
S + D L +WD + + P S++ H + V SF+
Sbjct: 31 SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90
Query: 159 PYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET--ILASSGTDR 216
D+T + + L + H + S L ++
Sbjct: 91 G-DLLFYRITREDETKKVIFEKLDLL-DSDMKKHSFWALKWGASNDRLLSHRLVATDVKG 148
Query: 217 RLHVWDLSKIGEEQSTEDAEDGP----PELLFIHGGHTAKISDFSWNPN 261
++W +E ++ P + + + +
Sbjct: 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 197
Score = 30.5 bits (69), Expect = 1.0
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 25/103 (24%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEV----NCLSFNPYSEYILATGSADKTVALWDL 179
D KL WD ++ + T++ H ++ + L+ + + + + G D
Sbjct: 311 WDGKLRFWDVKT---KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367
Query: 180 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
R + NE+ L DR + +
Sbjct: 368 R-----------------SGMGADLNES-LCCVCLDRSIRWFR 392
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 68.6 bits (167), Expect = 9e-13
Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 137 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN---LKLKLHSFESHK 193
V P + + L ++A +DK++ ++D+ LKL
Sbjct: 90 KVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS 149
Query: 194 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 253
+ + + T+ + ++ D++ I EE+ T E + GH + +
Sbjct: 150 KRPNAISIAEDDTTV-IIADKFGDVYSIDINSIPEEKFT-------QEPIL---GHVSML 198
Query: 254 SDFSWNPN--EPWVICSVSEDN 273
+D + I + D
Sbjct: 199 TDVHLIKDSDGHQFIITSDRDE 220
Score = 62.8 bits (152), Expect = 7e-11
Identities = 35/290 (12%), Positives = 85/290 (29%), Gaps = 25/290 (8%)
Query: 124 DDQKLMIWDTRSHNVSKPSH-TVDAHTAEVNCLSFNPYSEY--ILATGSADKTVALWDLR 180
+ D S K + + H + + + S+ + T D+ + +
Sbjct: 169 KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP 228
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+ HK + + + +L S+G D ++ WD G+ ST D
Sbjct: 229 QCFIVDKWLFGHKHFVSSICCGK--DYLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIK 285
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWV--ICSVSEDNIMQEYCDST----------DSDTKT 288
L + + + + E V I + + ++T
Sbjct: 286 PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDL 345
Query: 289 MRLDSIRSNGGISSTASPTASSTASESPTPTNSVHEKNYWQGLVLFDILVCEEQRQLLGT 348
I + S ++ + ++ V + F E ++
Sbjct: 346 ALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKN-----FAKFIEYNLNENSFVVNN 400
Query: 349 EEESSDRHSSDNDTEDLNSIWSMTDEQREYYKTQFHNLQRHKSVSDPSYH 398
E+ + + + +++ + +E Y +L++H +H
Sbjct: 401 EKSNEFDSAIIQSVQGDSNLVTKKEEIYPLYNVS--SLRKHGEHYSHHHH 448
Score = 29.3 bits (65), Expect = 2.6
Identities = 13/134 (9%), Positives = 32/134 (23%), Gaps = 27/134 (20%)
Query: 152 VNCLSFNPYSEYI------------LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 199
+ L + + + + + W K++ + K++ Q
Sbjct: 7 LQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQS 66
Query: 200 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 259
+ + L S+ D K+ + I +
Sbjct: 67 SENENENKKLKSNKGDSIKRTAA--KVPSPGLGA-------------PPIYSYIRNLRLT 111
Query: 260 PNEPWVICSVSEDN 273
+E +I D
Sbjct: 112 SDESRLIACADSDK 125
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 67.5 bits (166), Expect = 1e-12
Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 33/159 (20%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTV---ALW 177
SV+ D + +W V +N + ++ E + G D + L+
Sbjct: 34 SVSRDGTVRLWSKDD---QWLGTVVYTGQGFLNSVCYDSEKELL-LFGGKDTMINGVPLF 89
Query: 178 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 237
L++ H+ + + + ++ S D+ VW G
Sbjct: 90 ATSGEDP-LYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWK---EGSLVYN----- 137
Query: 238 GPPELLFIHGGHTAKISD---FSWNPNEPWVICSVSEDN 273
L H A + D S++ N+ + S D
Sbjct: 138 ----LQ----AHNASVWDAKVVSFSENK---FLTASADK 165
Score = 67.5 bits (166), Expect = 1e-12
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
S ++D + + D + T + H + V C+ P + + + D+TV +W
Sbjct: 200 SCSNDGLIKLVDMHT---GDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKE 254
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 233
N L I+ V N I+ S D + ++ K S +
Sbjct: 255 NGSL-KQVITLPAISIWSVDCMS-NGDIIVGSS-DNLVRIFSQEK-SRWASED 303
Score = 66.8 bits (164), Expect = 2e-12
Identities = 34/155 (21%), Positives = 51/155 (32%), Gaps = 29/155 (18%)
Query: 120 GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 179
GS D+ +W + + AH A V +SE T SADKT+ LW
Sbjct: 120 GS--WDKTAKVWKE-----GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172
Query: 180 RNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 238
+ + +F H D + + S D + + D+ G+ T
Sbjct: 173 DKV---IKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHT-GDVLRT------ 220
Query: 239 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
GH + + PN I S ED
Sbjct: 221 ----YE---GHESFVYCIKLLPN--GDIVSCGEDR 246
Score = 64.1 bits (157), Expect = 2e-11
Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 26/144 (18%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF 189
++ T P +T+ H V LSF ++ +GS DKT +W +L +++
Sbjct: 88 LFATSG---EDPLYTLIGHQGNVCSLSFQDG---VVISGSWDKTAKVWKEGSL---VYNL 138
Query: 190 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 249
++H ++ + +E ++ D+ + +W + T G H
Sbjct: 139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ---NDKVIKT------------FSGIH 183
Query: 250 TAKISDFSWNPNEPWVICSVSEDN 273
+ + + S S D
Sbjct: 184 NDVVRHLAVVDDG--HFISCSNDG 205
Score = 63.3 bits (155), Expect = 3e-11
Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 18/132 (13%)
Query: 142 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 201
S T+ H +V + S +A+ S D TV LW + L + + + V +
Sbjct: 11 SATLKGHDQDVRDVVAVDDS--KVASVSRDGTVRLWSKDDQWL-GTVVYTGQGFLNSVCY 67
Query: 202 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 261
+ +L G D ++ L P I GH + S+
Sbjct: 68 DS-EKELLLFGGKDTMINGVPLF---------ATSGEDPLYTLI--GHQGNVCSLSFQDG 115
Query: 262 EPWVICSVSEDN 273
V+ S S D
Sbjct: 116 ---VVISGSWDK 124
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 68.4 bits (166), Expect = 1e-12
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 18/173 (10%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVS--------KPSHTVDAHTAEVNCLSFNPYSEYILATG 168
+ S + +D R+ + + V + +NP ++A
Sbjct: 109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168
Query: 169 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 228
AD ++A+ + K+ + + V WSP LA + + + + +
Sbjct: 169 LADGSIAVLQVTETV-KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTLQEK 226
Query: 229 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDS 281
+ P F H ++ D W + I + D ++ D
Sbjct: 227 KVI--------PCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271
Score = 54.9 bits (131), Expect = 2e-08
Identities = 17/173 (9%), Positives = 44/173 (25%), Gaps = 15/173 (8%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
D+ W+ S+ D + + + T V + ++P + + A
Sbjct: 154 DMKWNPTVPSMVAVCLADGSIAVLQVTE---TVKVCATLPSTVAVTSVCWSPKGKQL-AV 209
Query: 168 GSADKTVALWDL-----RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
G + TV + + + H + V W + + D
Sbjct: 210 GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD------G 263
Query: 223 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
+ + + I + + + E +++
Sbjct: 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLV 316
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 66.6 bits (162), Expect = 3e-12
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 11/176 (6%)
Query: 102 FPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS 161
+ H+ GS Q + + AHT + + N
Sbjct: 152 YSNEFNLGQIHITKLQSSGSA-TTQDQGVQQKAI---LGKGVLIKAHTNPIKMVRLNR-K 206
Query: 162 EYILATGSADKT-VALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRL 218
++AT S D T + ++ + + F + ++ ++WS + + LA L
Sbjct: 207 SDMVATCSQDGTIIRVFKTEDGV-LVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTL 264
Query: 219 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
HV+++ ++ + F I +SE ++
Sbjct: 265 HVFEIFN-DQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL 319
Score = 52.0 bits (124), Expect = 2e-07
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 18/113 (15%)
Query: 130 IWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KL 186
++ T A+V + ++ LA S T+ ++++ N + K
Sbjct: 222 VFKTEDG---VLVREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHVFEIFNDQDNKR 277
Query: 187 HSFESHKDEI-FQVQWS----------PHNETILASSGTDRRLHVWDLSKIGE 228
H+ + + FQ +WS +A + VW +++ E
Sbjct: 278 HALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE 330
Score = 50.0 bits (119), Expect = 6e-07
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 137 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI 196
P + + V FN L + K+ ++++ + + H +
Sbjct: 7 ITRNPIVPENHVSNPVTDYEFNQDQSC-LILST-LKSFEIYNVHPVAHIMSQEMRH---L 61
Query: 197 FQVQWSPHNETILASSGTDRRLHVWDLSK 225
+V+ + +G +H+WD K
Sbjct: 62 SKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90
Score = 38.9 bits (90), Expect = 0.003
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 11/112 (9%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSH-----TVDAHTAEVNCLSFNPYSE 162
D+ W S V+D L +++ + +K + +E + +F +
Sbjct: 245 DMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD 303
Query: 163 Y-----ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 209
+A S V +W + + E + +Q + ++
Sbjct: 304 KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERWLIQMDQREQLMI 355
Score = 27.3 bits (60), Expect = 10.0
Identities = 4/59 (6%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 186 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 244
+ + + +++ + T + ++++ + S E +L
Sbjct: 12 IVPENHVSNPVTDYEFNQDQSCL--ILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLH 68
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 55.9 bits (135), Expect = 3e-10
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W +TDEQR+YY QF +Q + I G A++FF SKLP+ EL IW
Sbjct: 1 WKITDEQRQYYVNQFKTIQPDLN------GFIPGSAAKEFFTKSKLPILELSHIW 49
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 56.4 bits (136), Expect = 4e-10
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 346 LGTEEESSDRHSSD-NDTEDLNSIWSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQV 404
+G + W++T E+R + QFH+L P I+G
Sbjct: 1 MGHHHHHHSHVAQFPTPFGGSLDTWAITVEERAKHDQQFHSL-------KPISGFITGDQ 53
Query: 405 ARKFFENSKLPVTELRKIW 423
AR FF S LP L +IW
Sbjct: 54 ARNFFFQSGLPQPVLAQIW 72
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 55.9 bits (135), Expect = 4e-10
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 357 SSDNDTEDLNSIWSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPV 416
S +++ + W +T+EQREYY QF +LQ S ISG VA+ FF SKL +
Sbjct: 2 SLQDNSSYPDEPWRITEEQREYYVNQFRSLQPDPS------SFISGSVAKNFFTKSKLSI 55
Query: 417 TELRKIW 423
EL IW
Sbjct: 56 PELSYIW 62
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 54.0 bits (130), Expect = 2e-09
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 367 SIWSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
S W++ E + Y F +L P +SG + NSKLPV L ++W
Sbjct: 5 SPWAVKPEDKAKYDAIFDSL-------SPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 53.6 bits (129), Expect = 2e-09
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W ++ ++ Y F + +SG R+ F + LP T L IW
Sbjct: 2 WVVSPAEKAKYDEIFLKTDKDMD------GFVSGLEVREIFLKTGLPSTLLAHIW 50
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 53.6 bits (129), Expect = 3e-09
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W++ R Y+ F++ + S ++G AR S LP +L IW
Sbjct: 6 WAVPQSSRLKYRQLFNSHDKTMS------GHLTGPQARTILMQSSLPQAQLASIW 54
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 56.8 bits (136), Expect = 9e-09
Identities = 23/223 (10%), Positives = 68/223 (30%), Gaps = 26/223 (11%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 207
+++ +F+ +LA + V ++ + +++ + + I ++++
Sbjct: 16 MSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKGIY- 71
Query: 208 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 267
L ++V L + +T KI+ + + W +
Sbjct: 72 -LVVINAKDTVYVLSLYS-QKVLTTV--------------FVPGKITSIDTDASLDW-ML 114
Query: 268 SVSEDNIMQEYCDSTDSDTKTMRLDSIRSNGGISSTASPTASSTASESPTPTNSVHE-KN 326
++ M Y D D + + + S + S S P + +
Sbjct: 115 IGLQNGSMIVY----DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170
Query: 327 YWQGLVLFDILVCEEQRQLLGTEEESSDRHSSDNDTEDLNSIW 369
Y + + ++ E ++ + + T + +
Sbjct: 171 YEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213
Score = 53.7 bits (128), Expect = 8e-08
Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 12/159 (7%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
+L ++ I+ + V + + + F L +A TV +
Sbjct: 30 NLLAIATVTGEVHIYGQQQVEVVIKLE----DRSAIKEMRFVK--GIYLVVINAKDTVYV 83
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 236
L K+ + +I + + + + + V+D+ + +Q +
Sbjct: 84 LSLY--SQKVLTTVFVPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDR---DQLSSFKL 137
Query: 237 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
D + F + I WNP + + E +
Sbjct: 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL 176
Score = 52.6 bits (125), Expect = 2e-07
Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 40/239 (16%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSH--------NVSKPSHTVDAHTAEVNCLSFNPY 160
+ + + + ++++D N+ K S A + + + +NP
Sbjct: 104 IDTDASLDWML-IGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162
Query: 161 SEYILATGSADKTVALWDLRNLKLK-----------------LHSFESHKDEIFQVQWSP 203
+ + + L ++K + E ++ Q + P
Sbjct: 163 DIGTVLISY-EYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221
Query: 204 HNETILASSGTDRRLHVWDLS--KIGEEQSTEDAEDGPPELLFIHGGHT--AKISDFSWN 259
N + + D L WD + + ++ + E P+ +I T AKIS W
Sbjct: 222 -NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW- 279
Query: 260 PNEPWVICSVSEDNIMQEYCDSTDSDTKTMRLDSIR-SNGGISSTASPTASSTASESPT 317
+C + + + S L I S S +P
Sbjct: 280 ------MCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK 332
Score = 49.1 bits (116), Expect = 2e-06
Identities = 18/162 (11%), Positives = 44/162 (27%), Gaps = 12/162 (7%)
Query: 99 NFPFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN 158
F S L S+A +W + +
Sbjct: 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA 444
Query: 159 PYSEYILATGSADKTVALWDLRNLKLKLHSF----------ESHKDEIFQVQWSPHNETI 208
Y TG ++ +V ++D + ++ ++ ++ + + ++ ++
Sbjct: 445 EYGT-AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET-LE 502
Query: 209 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 250
LA S + ++ E G E+ F
Sbjct: 503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544
Score = 33.7 bits (76), Expect = 0.13
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 141 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 188
PS V A+ + + ++ + + A ++ L D R +
Sbjct: 567 PSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRGPAIIYME 612
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 51.5 bits (123), Expect = 2e-08
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 347 GTEEESSDRHSSDNDTEDLNSIWSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVAR 406
GT + E ++ + + + + Y F+ L P I+G A+
Sbjct: 21 GTMNGPFGHGYGEGAGEGIDDVEWVVGKDKPTYDEIFYTL-------SPVNGKITGANAK 73
Query: 407 KFFENSKLPVTELRKIW 423
K SKLP T L KIW
Sbjct: 74 KEMVKSKLPNTVLGKIW 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 5e-08
Identities = 83/492 (16%), Positives = 150/492 (30%), Gaps = 150/492 (30%)
Query: 2 AISIQALTSPKLLLHLSQNAF-FTWSALPLSHSIYRFY-RLCVAEPFDDAVEERVINEEY 59
A S + LT LS + + + + +L E F+ + E E +
Sbjct: 3 AYSTRPLT-------LSHGSLEHVL---LVPTASFFIASQL--QEQFNKILPEPT--EGF 48
Query: 60 KIWKKNTP------------FLYDLVVNNYVANISCILNISILFFEIIFTQNFPFPLSRQ 107
+ P ++ LV + V +LN+ + FE + L
Sbjct: 49 --AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE----NCY---LEGN 99
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL-- 165
D+ H L L +D L ++ + K T F+ S L
Sbjct: 100 DI--HALAAKLLQE--NDTTL----VKTKELIKNYITARIMAKR----PFDKKSNSALFR 147
Query: 166 --ATGSADKTVAL----------WD-LRNL----KLKLHSF-ESHKDEIFQVQWSPHNET 207
G+A + VA+ ++ LR+L + + + + + ++ + +
Sbjct: 148 AVGEGNA-QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 208 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 267
+ + G + + W L E+ + P + + S P +I
Sbjct: 207 KVFTQGLN--ILEW-L---------ENPSNTPDKDYLLS-------IPISC-P----LIG 242
Query: 268 SVSEDNIMQ--EY---CDSTDSDTKTMRLDSIRSNGGISS---TASPTASSTASESPTPT 319
++Q Y +R ++ G S TA A + + ES
Sbjct: 243 ------VIQLAHYVVTAKLLGFTPGELR-SYLKGATGHSQGLVTAVAIAETDSWES---- 291
Query: 320 NSVHEKNYWQGL-VLFDILVCEEQRQLLGTEEESSDRHSSDNDTED-----LNSIWSMTD 373
+ + + VLF I T S S + E L SI ++T
Sbjct: 292 ---FFVSVRKAITVLFFI-GVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISNLTQ 346
Query: 374 EQREYYKTQF-HNLQRHKSVS-----DPSYHLISGQVARKFFENSKLP------VTELRK 421
EQ + Y + +L K V ++SG P LRK
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-----------PPQSLYGLNLTLRK 395
Query: 422 IWYP---DSNKI 430
P D ++I
Sbjct: 396 AKAPSGLDQSRI 407
Score = 34.3 bits (78), Expect = 0.094
Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 94/232 (40%)
Query: 10 SPKLLLHLSQN---AFFTWS-----------ALPLS-----HSIYRFYRL-------CVA 43
S K LL +Q A +P HS L +A
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS------LGEYAALASLA 1774
Query: 44 E--PFDDAVEERVINEEYKIWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFP 101
+ + VE ++F+ + Q
Sbjct: 1775 DVMSIESLVE-------------------------------------VVFYRGMTMQVAV 1797
Query: 102 FPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAE----VNCLSF 157
R ++ S +G +A + + + V T VN +
Sbjct: 1798 ---PRDELG-----RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN---Y 1846
Query: 158 N-PYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 208
N +Y+ A G AL + N+ L+ + K +I ++Q S E +
Sbjct: 1847 NVENQQYVAA-G---DLRALDTVTNV---LNFIKLQKIDIIELQKSLSLEEV 1891
Score = 28.9 bits (64), Expect = 4.5
Identities = 19/130 (14%), Positives = 28/130 (21%), Gaps = 48/130 (36%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF------NPYSEYILATGSADKTV 174
A D +W+ D H + S NP + I G K
Sbjct: 1640 KAAQD----VWNR-----------ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK-- 1682
Query: 175 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 234
+R + FE+ D E I + +
Sbjct: 1683 ---RIRENYSAM-IFETIVDG------KLKTEKIFKEINEHSTSYTFR------------ 1720
Query: 235 AEDGPPELLF 244
LL
Sbjct: 1721 ---SEKGLLS 1727
Score = 28.5 bits (63), Expect = 6.0
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 175 ALWDLRNLKLKLHSFESHKDEIFQ-VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 233
+W+ + H +++ I V +P N TI +R+ + S + E
Sbjct: 1644 DVWN----RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE-NYSAM----IFE 1694
Query: 234 DAEDGPPELLFIHGGHTAKISDFSWN-PNE 262
DG + I + +++
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 50.6 bits (120), Expect = 6e-07
Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 7/124 (5%)
Query: 300 ISSTASPTASSTASESPTPTNSVHEKNYWQGLVLFDILVCEEQRQLLGTEEESSDRHSSD 359
+ ++ + + + + E ++ E D D
Sbjct: 381 LKPKLLEALDDMLAQDIAKLMPLLRQEELESVEAGVAGGAFEGTRMGPFVERGPDEAIED 440
Query: 360 NDTEDLNSIWSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTEL 419
+ + + + + Y F+NL P+ +SG A+ + +KLP + L
Sbjct: 441 GEEGSEDDAEWVVTKDKSKYDEIFYNL-------APADGKLSGSKAKTWMVGTKLPNSVL 493
Query: 420 RKIW 423
+IW
Sbjct: 494 GRIW 497
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 67/493 (13%), Positives = 139/493 (28%), Gaps = 161/493 (32%)
Query: 44 EPFD-----DAVEERVINEEYK-IWKKNTP-----FLYDLVVNNYVANISCILNISILFF 92
+ FD D + + EE I L+ +++ + F
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-------EMVQKFV 83
Query: 93 EIIFTQNFPF---PLSRQDVAWHLL-------HESLFGSVADDQKLMIWDTRSHNVSK-- 140
E + N+ F P+ + ++ + L+ K + R K
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQPYLKLR 141
Query: 141 -------PSHTVDAH----------TAEVNCLSF-----NPYSEYILATGSADKTVA--- 175
P+ V +V CLS+ + + L + +
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 176 -LWDL---------------RNLKLKLHSFESHKDEIFQVQWSPHNET--ILASSGTDRR 217
L L N+KL++HS ++ + + P+ +L
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCLLVL-----L-- 251
Query: 218 LHVWDL---------SKI-----------------GEEQSTEDAEDG--PPEL--LFIHG 247
+V + KI S + P E+ L
Sbjct: 252 -NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--- 307
Query: 248 GHTAKISDFSWN--PNE-----PWVICSVSEDNIMQEYCDSTD--SDTKTMRLDSIRSNG 298
K D P E P + ++E +++ + D +L +I
Sbjct: 308 ---LKYLDCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATWDNWKHVNCDKLTTIIE-- 360
Query: 299 GISSTASPTASSTASESPTPTNSVHEKNYWQGLVLF--DILVCEEQRQLLGTEEESSDRH 356
SS P + + K + + L +F + L+ + SD
Sbjct: 361 ----------SSLNVLEP----AEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSD-- 403
Query: 357 SSDNDTEDLNSIWSMTDEQREYYKTQFHNLQ---RHKSVSDPSYH--LISGQVARKFFEN 411
L+ +S+ ++Q + ++ + K ++ + H ++ K F++
Sbjct: 404 -VMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 412 SKLPVTELRKIWY 424
L L + +Y
Sbjct: 462 DDLIPPYLDQYFY 474
Score = 41.8 bits (97), Expect = 4e-04
Identities = 48/397 (12%), Positives = 106/397 (26%), Gaps = 140/397 (35%)
Query: 3 ISIQALTSPKLLLHLSQNAFFT----WSALPLSHSIYRFYRLCVAEPFDDAVEERVINEE 58
++++ SP+ +L + Q + W++ S + R+ + + ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRI---HSIQAELRRLLKSKP 242
Query: 59 YK--------IWKKNT--PFLYDLVVNNYVANISC-IL------------------NISI 89
Y+ + F N+SC IL +IS+
Sbjct: 243 YENCLLVLLNVQNAKAWNAF-----------NLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 90 LFFEIIFTQN-----F-------PFPLSRQDVAWHLLHESLFGSVADDQKLMIWDT-RSH 136
+ T + P L R+ + + S+ D WD +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHV 350
Query: 137 NVSKPSHTVDAHTAEVNCLSFNPYSEY-------------------IL------------ 165
N K + ++ + +N L Y + ++
Sbjct: 351 NCDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 166 ATGSADKTVALWDLRNLKLKLHS----FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 221
++ + + + S + + + + H +I+ +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HR-SIVDHYNIPKTFDSD 462
Query: 222 DLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKIS-------------DFSW------NPN 261
DL D + H G H I DF + + +
Sbjct: 463 DLIP--------PYLDQ---YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 262 EPWVICSVSEDNIMQ--EYCDS-TDSDTK-TMRLDSI 294
W + + Q Y D+D K +++I
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 44.0 bits (104), Expect = 4e-06
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
+ Y+ + ++ + + A F + S LP L KIW
Sbjct: 3 LTQLSSGNPVYEKYYRQVEAGNT------GRVLALDAAAFLKKSGLPDLILGKIW 51
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 39.4 bits (91), Expect = 0.002
Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 17/146 (11%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ A KL++ DT V K T+ P AT + +++ DL
Sbjct: 6 APARPDKLVVIDTEKMAVDK-VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64
Query: 181 NLK----LKLHSFESHKDEIFQVQWSPHNETILASSGT-----------DRRLHVWDLSK 225
+ + L + E +F SP +T+ R+ ++D
Sbjct: 65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET 124
Query: 226 IGEEQSTEDAEDGPPELLFIHGGHTA 251
+ +A L + G
Sbjct: 125 -LSRRKAFEAPRQITMLAWARDGSKL 149
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 36.3 bits (84), Expect = 0.016
Identities = 19/107 (17%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 177
++ + A + I DT ++NV TV A + ++ +P + + T A T+++
Sbjct: 46 VYVANAHSNDVSIIDTATNNVIA---TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVI 101
Query: 178 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
D + + + ++ K + SP + + ++ D+ + V +
Sbjct: 102 DTTSNTV-AGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTV 146
Score = 34.8 bits (80), Expect = 0.048
Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 7/146 (4%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ L + DT S+ V+ TV L+ +P + + T + DKTV++ +
Sbjct: 91 TNMASSTLSVIDTTSNTVAG---TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTV 146
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 240
+ +++ + + +P + ++ + V D T E P
Sbjct: 147 TKAV-INTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVKVEAAPS 203
Query: 241 ELLFIHGGHTAKISDFSWNPNEPWVI 266
+ G A +++ N +I
Sbjct: 204 GIAVNPEGTKAYVTNVDKYFNTVSMI 229
Score = 30.1 bits (68), Expect = 1.6
Identities = 26/193 (13%), Positives = 60/193 (31%), Gaps = 26/193 (13%)
Query: 127 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL 186
+ + DT ++ ++ + + ++ P + + S TV++ D +
Sbjct: 225 TVSMIDTGTNKITA---RIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI-- 278
Query: 187 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 246
+ V +P+ S V + + +S +
Sbjct: 279 ------TATM-AVGKNPYASGQFIGSI-----PVQPVYPSADFKSNITSGYIF------- 319
Query: 247 GGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRLDSIRSNGGISSTASP 306
+ +D S + E W + ++ T S+T + SN + +
Sbjct: 320 LSEPVQFTDLSKDATE-WKWDFGDGSSSKKQNPTHTYSETGIYTVRLTVSNSNGTDSQIS 378
Query: 307 TASSTASESPTPT 319
T + SPTP+
Sbjct: 379 TVNVVLKGSPTPS 391
Score = 30.1 bits (68), Expect = 1.6
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 161 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
S + S +++ D+ + K+ + SP + ++ + +
Sbjct: 1 STFAYIANSESDNISVIDVTSNKV-TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSI 58
Query: 221 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 266
D + +T A P + G +++ + VI
Sbjct: 59 IDTAT-NNVIATVPAGSSPQGVAVSPDGKQVYVTN--MASSTLSVI 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.60
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 9/35 (25%)
Query: 403 QVARKFFENSKLPVTELRKIWYPDSNKILSTWNVT 437
Q +K + S L K++ DS L+ T
Sbjct: 20 QALKKL-QAS------L-KLYADDSAPALAI-KAT 45
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 31.1 bits (71), Expect = 0.75
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 15/50 (30%)
Query: 235 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV-SEDNIMQEYCDSTD 283
L ++HGG +++ ++ + D IM+ T
Sbjct: 83 QPTSQATLYYLHGGG--------------FILGNLDTHDRIMRLLARYTG 118
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 30.5 bits (68), Expect = 1.2
Identities = 15/135 (11%), Positives = 31/135 (22%), Gaps = 22/135 (16%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEV------------NCLSFNPYSEYILATG 168
++ + MI +N+ VD + V P +
Sbjct: 6 ALKAGHEYMIVTNYPNNLHV----VDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN 61
Query: 169 SADKTVALWDLRNLKLKLH-----SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+ + DL K H ++ SP + + ++ +
Sbjct: 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHY 120
Query: 224 SKIGEEQSTEDAEDG 238
DG
Sbjct: 121 VVKPPRLEVFSTADG 135
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; 1.63A {Trichoderma reesei}
Length = 473
Score = 30.3 bits (69), Expect = 1.3
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
IWDT +P D + C S+N +E
Sbjct: 37 IWDTFCA---QPGKIADGSSGVTACDSYNRTAE 66
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 30.6 bits (69), Expect = 1.3
Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 156 SFNPYSEYILATGSADKT---VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 212
+ + ++ +T V D + + H D + + + ++
Sbjct: 341 TLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR-TIGARHTDPVDPAYYPEP-QIRTFTA 398
Query: 213 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 260
R +H + T A++ PP ++ HGG T+++ +
Sbjct: 399 PDGREIHAH-IYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAV-LDL 444
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus
circulans} SCOP: c.1.8.4
Length = 449
Score = 29.8 bits (68), Expect = 2.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 120 GSVADDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
G+ +D + M IWDT +H P + V C S++ E
Sbjct: 22 GAYNEDGRGMSIWDTFAH---TPGKVKNGDNGNVACDSYHRVEE 62
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A
{Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Length = 540
Score = 29.6 bits (67), Expect = 2.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
IWDT +H +P +V S++ Y E
Sbjct: 50 IWDTFTH--RRPDMIRGGTNGDVAVDSYHLYKE 80
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent
enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F
NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A
1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 29.4 bits (67), Expect = 2.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 120 GSVADDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
G+ +D + + IWDT +H P + V C S++ Y E
Sbjct: 22 GAYQEDGRGLSIWDTFAH---TPGKVFNGDNGNVACDSYHRYEE 62
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 29.1 bits (65), Expect = 2.8
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Query: 163 YILATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPHNETILASSGTDRRLH 219
+ D+ + + D+ + + S K + P + + S +H
Sbjct: 135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH 194
Query: 220 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 266
V+DL + + + + LL+ S+ W + VI
Sbjct: 195 VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN--WISEDISVI 239
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 29.0 bits (66), Expect = 3.0
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
IWDT P D + +V S+N + E
Sbjct: 37 IWDTFCK---APGKIADGSSGDVATDSYNRWRE 66
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 29.1 bits (66), Expect = 3.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
WD HN P VD +V S++ Y+E
Sbjct: 104 TWDHFCHN--FPEWIVDRSNGDVAADSYHMYAE 134
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase,
polysaccharide degradation, transition state mimic,
carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga
maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A*
1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A*
2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A*
2j7f_A* 2j7g_A* 2j7h_A* ...
Length = 468
Score = 29.0 bits (66), Expect = 3.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 120 GSVADDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
GS D M IW T SH P + + T +V C +N + E
Sbjct: 45 GSPLADGAGMSIWHTFSH---TPGNVKNGDTGDVACDHYNRWKE 85
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 29.1 bits (66), Expect = 3.4
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
IWDT +H P + VD T ++ S++ Y E
Sbjct: 40 IWDTLTHE--HPDYVVDGATGDIADDSYHLYKE 70
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of
glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP}
SCOP: c.1.8.4 PDB: 1gon_A
Length = 479
Score = 28.7 bits (65), Expect = 4.2
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 120 GSVADDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
G+ A+D + IWDT + P + T +V ++ + E
Sbjct: 35 GAAAEDGRTPSIWDTYAR---TPGRVRNGDTGDVATDHYHRWRE 75
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 28.4 bits (64), Expect = 4.2
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 11/49 (22%)
Query: 215 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 263
H G+ P ++ +HG + +W P P
Sbjct: 16 TLASHALVA---GDP-------QSPA-VVLLHGAGPGAHAASNWRPIIP 53
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A
{Halothermothrix orenii}
Length = 458
Score = 28.6 bits (65), Expect = 4.8
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 120 GSVADDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
G+ +D K IWD SH P + T ++ C ++ Y E
Sbjct: 30 GAFNEDGKGESIWDRFSH---TPGKIENGDTGDIACDHYHLYRE 70
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A
{Trifolium repens} SCOP: c.1.8.4
Length = 490
Score = 28.7 bits (65), Expect = 4.9
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
IWDT +H P D +V ++ Y E
Sbjct: 47 IWDTFTHKY--PEKIKDRTNGDVAIDEYHRYKE 77
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect,
beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne
brassicae} SCOP: c.1.8.4
Length = 464
Score = 28.2 bits (64), Expect = 5.1
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
IWD H P D ++ C S++ Y E
Sbjct: 33 IWDRLVHT--SPEVIKDGTNGDIACDSYHKYKE 63
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
3ptq_A*
Length = 505
Score = 28.3 bits (64), Expect = 5.4
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
IWDT +H P D +V S++ Y E
Sbjct: 62 IWDTFTHQ--HPEKIADRSNGDVASDSYHLYKE 92
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural
genomics/PR initiative, RSGI, structural genomics,
hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4
PDB: 1np2_A
Length = 431
Score = 28.2 bits (64), Expect = 5.5
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 120 GSVADDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
G+ +D + IWD + +P D T E C + Y E
Sbjct: 21 GATQEDGRGPSIWDAFAQ---RPGAIRDGSTGEPACDHYRRYEE 61
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A
{Rauvolfia serpentina} PDB: 2jf6_A
Length = 532
Score = 28.3 bits (64), Expect = 5.6
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
IWDT + P+ D ++ Y E
Sbjct: 71 IWDTFTQRS--PAKISDGSNGNQAINCYHMYKE 101
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 28.4 bits (64), Expect = 5.7
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
WD H P D +V S++ Y E
Sbjct: 102 TWDHFCHT--YPERISDMTNGDVAANSYHLYEE 132
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 28.3 bits (64), Expect = 6.0
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
IWD +H P + +V ++ Y E
Sbjct: 48 IWDAFAH---TPGNVAGNQNGDVATDQYHRYKE 77
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 28.1 bits (63), Expect = 6.3
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 10/33 (30%)
Query: 216 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 248
RLH E PP +L + G
Sbjct: 16 LRLHFRAY---------EGDISRPP-VLCLPGL 38
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 27.7 bits (62), Expect = 6.7
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 233 EDAEDGPPELLFIHGGHTAKISDFSWNPNEP 263
D +G P ++ IHG + +W P
Sbjct: 20 HDVGEGQP-VILIHGSGPGVSAYANWRLTIP 49
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor,
PEST defense, family GH1, hydrolase, chloroplast,
transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays}
SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A*
1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Length = 512
Score = 27.9 bits (63), Expect = 8.0
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
WD HN P +D +++ S++ Y
Sbjct: 52 NWDHFCHN--HPERILDGSNSDIGANSYHMYKT 82
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral
beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA;
1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*
Length = 469
Score = 27.5 bits (62), Expect = 9.1
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
+WDT +H T +V C S+ + E
Sbjct: 31 VWDTFTHQ--GGERVFKNQTGDVACGSYTLWEE 61
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase;
HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A*
3gnr_A*
Length = 488
Score = 27.5 bits (62), Expect = 10.0
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 130 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 162
IWDT +H D A+V ++ + E
Sbjct: 45 IWDTFAH---TFGKITDFSNADVAVDQYHRFEE 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.398
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,434,241
Number of extensions: 356682
Number of successful extensions: 2164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1169
Number of HSP's successfully gapped: 374
Length of query: 437
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 341
Effective length of database: 4,021,377
Effective search space: 1371289557
Effective search space used: 1371289557
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)