RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4571
(437 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 73.2 bits (178), Expect = 5e-15
Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
+ S + D+ + +WD + T+ H V + F+ ++I +
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHDNWVRGVLFHSGGKFI-LS 264
Query: 168 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
+ DKT+ +WD +N + + + +H+ + + + + + D+ + VW+
Sbjct: 265 CADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 317
Score = 62.1 bits (149), Expect = 3e-11
Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 39/178 (21%)
Query: 115 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY----------- 163
+L S ++DQ + +W + + + H V C+S+ P S Y
Sbjct: 154 DGTLIASCSNDQTVRVWVVATK---ECKAELREHRHVVECISWAPESSYSSISEATGSET 210
Query: 164 --------ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 215
L +GS DKT+ +WD+ L + H + + V + + S D
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHS-GGKFILSCADD 268
Query: 216 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ L VWD + H ++ ++ P+V+ + S D
Sbjct: 269 KTLRVWDYKN--------------KRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVDQ 311
Score = 54.0 bits (128), Expect = 1e-08
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 131 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE 190
W R + + H + V + F+P + + S D T+ +WD + +
Sbjct: 3 WIPRP----PEKYALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDF-ERTLK 56
Query: 191 SHKDEIFQVQWSPHN 205
H D + + +
Sbjct: 57 GHTDSVQDISFDHSG 71
Score = 44.0 bits (102), Expect = 2e-05
Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 11/185 (5%)
Query: 111 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 170
+ + S + D+ + +W+ ++ T H V + N I A+ S
Sbjct: 108 SIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGTLI-ASCSN 163
Query: 171 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 230
D+TV +W + + K H+ + + W+P + S T
Sbjct: 164 DQTVRVWVVATKECK-AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222
Query: 231 STEDA-----EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSD 285
+ D + L GH + ++ +++ S ++D ++ +
Sbjct: 223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRC 281
Query: 286 TKTMR 290
KT+
Sbjct: 282 MKTLN 286
Score = 43.6 bits (101), Expect = 3e-05
Identities = 29/252 (11%), Positives = 71/252 (28%), Gaps = 23/252 (9%)
Query: 187 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 246
++ H+ + +V + P +++ S+ D + VWD +
Sbjct: 11 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYET--------------GDFERTL 55
Query: 247 GGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRLDSIRSNGGISST--- 303
GHT + D S++ + + ++ I + D S+ I
Sbjct: 56 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115
Query: 304 -ASPTASSTASESPTPTNSVHEKNYWQGLVLFDILVCEEQRQLLGTEEESSDRHSSDNDT 362
S + T T + + + ++ + S+D+
Sbjct: 116 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC---SNDQTVRVWVV 172
Query: 363 EDLNSIWSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKI 422
+ + + + + S+S+ + F S ++ +
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK-M 231
Query: 423 WYPDSNKILSTW 434
W + L T
Sbjct: 232 WDVSTGMCLMTL 243
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 73.2 bits (178), Expect = 7e-15
Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 21/164 (12%)
Query: 111 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 170
LF S A D +WD R T H +++N + F P ATGS
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVRE---GMCRQTFTGHESDINAICFFPNGNA-FATGSD 246
Query: 171 DKTVAL-WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 229
D T L + +L +S ++ I V +S + +L + D +VWD K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK---- 301
Query: 230 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ + GH ++S + V + S D+
Sbjct: 302 ----------ADRAGVLAGHDNRVSCLGVTDDGMAVA-TGSWDS 334
Score = 64.0 bits (154), Expect = 7e-12
Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
+ + + + F + +DD ++D R+ + + +SF+ L
Sbjct: 231 AICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-ITSVSFSKSGRL-LLA 287
Query: 168 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
G D +WD H + + + + + +A+ D L +W+
Sbjct: 288 GYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
Score = 52.8 bits (125), Expect = 3e-08
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 82 SCILNISILFFEIIFTQNFPFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKP 141
+C L E++ + V++ L + DD +WD +
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK---ADR 304
Query: 142 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 178
+ + H V+CL +ATGS D + +W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMA-VATGSWDSFLKIWN 340
Score = 44.0 bits (102), Expect = 2e-05
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 140 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 199
+ T+ H A++ + + S L + S D + +WD K+H+ +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTC 103
Query: 200 QWSPHNETI 208
++P +
Sbjct: 104 AYAPSGNYV 112
Score = 29.3 bits (64), Expect = 0.90
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 176 LWDLRNLKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+ + ++++ + H +I+ + W + +L S+ D +L +WD
Sbjct: 37 IDPVGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDS 84
Score = 28.9 bits (63), Expect = 1.3
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 248 GHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRLDS 293
GH AKI W + + S S+D + + T + + L S
Sbjct: 53 GHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHAIPLRS 97
Score = 27.4 bits (59), Expect = 3.4
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 15/80 (18%)
Query: 200 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 259
+ + S D +WD+ + GH + I+ +
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVRE--------------GMCRQTFTGHESDINAICFF 235
Query: 260 PNEPWVICSVSEDNIMQEYC 279
PN + S+D + +
Sbjct: 236 PNGNA-FATGSDDATCRLFD 254
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 63.7 bits (153), Expect = 1e-11
Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 17/133 (12%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAE---------VNCLSFN 158
V + S + D+ + +W+ ++ N S T ++ T E V ++
Sbjct: 259 SVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317
Query: 159 PYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-----NETILASSG 213
EYI +GS D+ V WD ++ L + H++ + V + + A+
Sbjct: 318 QNDEYI-LSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375
Query: 214 TDRRLHVWDLSKI 226
D + +W KI
Sbjct: 376 GDCKARIWKYKKI 388
Score = 59.8 bits (143), Expect = 2e-10
Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 36/183 (19%)
Query: 111 WHLLHESLFGSVADDQKLMIWDTRS----HNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
+ + D+ + +WD+ + + + + H V + F + +
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VV 270
Query: 167 TGSADKTVALWDLRNLKLK-----------LHSFESHKDEIFQVQWSPHNETILASSGTD 215
+GS D++V LW+L+N K ++ HKD + V + N+ + S D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKD 329
Query: 216 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-----VICSVS 270
R + WD L + GH + + V + S
Sbjct: 330 RGVLFWDKKS--------------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375
Query: 271 EDN 273
D
Sbjct: 376 GDC 378
Score = 50.6 bits (119), Expect = 2e-07
Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 9/133 (6%)
Query: 154 CLSFNPYSEYILATGSADKTVALWDL---RNLKLKLHSFESHKDEIFQVQWSPHNETILA 210
L + S + L++ R + ++LH H + V++S E +
Sbjct: 20 LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL-- 77
Query: 211 SSGTDRRLHVWDLSKIGEEQSTED----AEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 266
++G ++ V+ +S D +D I ++P+ ++
Sbjct: 78 ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137
Query: 267 CSVSEDNIMQEYC 279
+ I
Sbjct: 138 TGAEDRLIRIWDI 150
Score = 49.8 bits (117), Expect = 3e-07
Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 153 NCLSFNPYSEYILATGSADKTVALWDLRN------LKLKLHSFESHKDEIFQVQWSPHNE 206
++ +P +A GS D+ V +WD L + S HKD ++ V ++ +
Sbjct: 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267
Query: 207 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 266
+ + S DR + +W+L + ++ G E+ +I H + + N+ +++
Sbjct: 268 S-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYIL 324
Query: 267 CSVSEDNIMQEYCDSTDSDTKTMR 290
S S+D + + + + ++
Sbjct: 325 -SGSKDRGVLFWDKKSGNPLLMLQ 347
Score = 39.0 bits (89), Expect = 0.001
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 19/87 (21%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-----------------K 185
H HT+ V C+ F+ EY LATG +KT ++ + + L
Sbjct: 56 HKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113
Query: 186 LHSFESHKDEIFQVQWSPHNETILASS 212
S S I V +SP + + +
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGA 140
Score = 27.1 bits (58), Expect = 4.7
Identities = 36/298 (12%), Positives = 89/298 (29%), Gaps = 74/298 (24%)
Query: 55 INEEYKIWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFPFPLSRQ------- 107
N+ K PFL DL + + N + + + L +
Sbjct: 6 YNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV 65
Query: 108 -DVAWHLLHESLFGSVADDQKLMIWDTRSHNV---------------SKPSHTVDAHTAE 151
V + ++ + + ++ ++ ++ + + + +
Sbjct: 66 CCVKFS--NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 152 VNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK------------------ 193
+ + F+P +++ ATG+ D+ + +WD+ N K+ + +
Sbjct: 124 IRSVCFSPDGKFL-ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 194 ----------------------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 231
D + V SP + +A+ DR + VWD +
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 232 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTM 289
+ + GH + + + V+ S S D ++ + ++
Sbjct: 243 LDSENE-------SGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQNANNKSDS 292
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 60.6 bits (145), Expect = 1e-10
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 152 VNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILA 210
++C ++N +A + V +++ K ++H + H ++ V W+P + +
Sbjct: 10 ISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIV 67
Query: 211 SSGTDRRLHVWD 222
+ GTDR +VW
Sbjct: 68 TCGTDRNAYVWT 79
Score = 51.4 bits (121), Expect = 1e-07
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 117 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 176
+ ++ ++ I++ + H + H +V + + P S + T D+ +
Sbjct: 20 TQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSNR-IVTCGTDRNAYV 77
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
W L+ K + + NE A R + +
Sbjct: 78 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124
Score = 42.5 bits (98), Expect = 7e-05
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 16/87 (18%)
Query: 187 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 246
HSF + I W+ + T +A + +H+++ +
Sbjct: 3 HSF--LVEPISCHAWNK-DRTQIAICPNNHEVHIYEK------------SGNKWVQVHEL 47
Query: 247 GGHTAKISDFSWNPNEPWVICSVSEDN 273
H +++ W P+ I + D
Sbjct: 48 KEHNGQVTGVDWAPDSNR-IVTCGTDR 73
Score = 39.5 bits (90), Expect = 5e-04
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 116 ESLFGSVADDQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFNPYSEY---ILATGS 169
+S + ++ D ++ + + H V+ +S + T
Sbjct: 289 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 348
Query: 170 ADKTVALWDLRNLKLKL 186
D +++WD+R+L+ L
Sbjct: 349 MDGGMSIWDVRSLESAL 365
Score = 38.3 bits (87), Expect = 0.002
Identities = 19/153 (12%), Positives = 47/153 (30%), Gaps = 9/153 (5%)
Query: 75 NNYVANISCILNISILFFEIIFTQNFPFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTR 134
+ VA +S + + + + +A + ES + D +++
Sbjct: 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFT-- 270
Query: 135 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKD 194
++ + + S + + DK + L S HK+
Sbjct: 271 -YDSAAGKLSFGGRLDVPKQSSQRGLT-ARERFQNLDKKASSEGSAAAGAGLDSL--HKN 326
Query: 195 EIFQVQWSP---HNETILASSGTDRRLHVWDLS 224
+ Q+ + ++G D + +WD+
Sbjct: 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
Score = 27.5 bits (59), Expect = 3.1
Identities = 30/209 (14%), Positives = 59/209 (28%), Gaps = 20/209 (9%)
Query: 65 NTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFPFPLSRQDVAWHLLHESLFGSVAD 124
++ + + S + F + ++ V + + S V+
Sbjct: 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSH 221
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
D + + D + T + ++F S ++A G V L+ +
Sbjct: 222 DSTVCLADADKKMAVATLAS---ETLPLLAVTFITESS-LVAAGHDCFPV-LFTYDSAAG 276
Query: 185 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 244
KL SF D ++ R D E + A L
Sbjct: 277 KL-SFGGRLD--------VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG-----LDS 322
Query: 245 IHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+H ++IS S + C+ D
Sbjct: 323 LHKNSVSQISVLSGGKAKCSQFCTTGMDG 351
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 58.7 bits (140), Expect = 3e-10
Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 18/163 (11%)
Query: 111 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 170
+ S + D+ + +W+T + + T++ H + CL + ++ +GS+
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTC---EFVRTLNGHKRGIACLQYRDR---LVVSGSS 196
Query: 171 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 230
D T+ LWD+ + V+ + + S D ++ VWDL + +
Sbjct: 197 DNTIRLWDIECGACLRV----LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR 252
Query: 231 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ L H+ ++ ++ I S S D+
Sbjct: 253 APA-----GTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDD 287
Score = 51.4 bits (121), Expect = 7e-08
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 17/124 (13%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
+ +A + L S + D + +WD + + + +
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGAC------LRVLEGHEELVRCIRFDNKRIV 232
Query: 167 TGSADKTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 218
+G+ D + +WDL L L + H +F++Q+ + SS D +
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTI 289
Query: 219 HVWD 222
+WD
Sbjct: 290 LIWD 293
Score = 46.8 bits (109), Expect = 2e-06
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 136 HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE 195
H++ + H + V CL ++ + +G D T+ +WD L+ H
Sbjct: 3 HSLQR-IHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLEC-KRILTGHTGS 57
Query: 196 IFQVQWSPH 204
+ +Q+
Sbjct: 58 VLCLQYDER 66
Score = 32.9 bits (73), Expect = 0.065
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 17/95 (17%)
Query: 185 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 244
++H ++ +Q+ ++ + S D + +WD + E
Sbjct: 7 RIHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNT--------------LECKR 49
Query: 245 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYC 279
I GHT + ++ S S +
Sbjct: 50 ILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 84
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 58.7 bits (140), Expect = 5e-10
Identities = 21/185 (11%), Positives = 56/185 (30%), Gaps = 15/185 (8%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN----------LKLKLHSFESH 192
+ AH A++ +S + S D + +WD + +H H
Sbjct: 8 NAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 193 KDEIFQ-VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 251
++ Q ++ ++A++ L + +++ E + + + A
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 252 KISDFSWNPNEPWVICSVSED-NIMQEYCDSTDSDTKTMRLDSIRSNGGISSTASPTASS 310
S + + + ++ ++ L+ + + SP S
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 311 TASES 315
+ S
Sbjct: 185 QFATS 189
Score = 53.3 bits (126), Expect = 2e-08
Identities = 22/185 (11%), Positives = 56/185 (30%), Gaps = 28/185 (15%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDA---------HTAEVNCLSFNPYSEYILATGSAD 171
S + D L +WD + + P + H + + + + ++AT S
Sbjct: 29 SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 88
Query: 172 KTVALWDLRN---------LKLKLHSFESHKDEIFQVQWSPHNET----ILASSGTDRRL 218
+ + + KL L + K + ++W N+ L ++
Sbjct: 89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT 148
Query: 219 HVWDLSKIGEEQSTEDAEDGP----PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
++W +E ++ P + + + + +I + +
Sbjct: 149 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGT 206
Query: 275 MQEYC 279
+Q
Sbjct: 207 VQISE 211
Score = 45.6 bits (106), Expect = 7e-06
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 2/115 (1%)
Query: 124 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 183
+ + + + + S+ S AH++ V LSFN E + + D + WD++ +
Sbjct: 264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDGKLRFWDVKTKE 322
Query: 184 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 238
+ + H D+I + + S V L K D +
Sbjct: 323 R-ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 376
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 57.1 bits (136), Expect = 1e-09
Identities = 13/113 (11%), Positives = 30/113 (26%), Gaps = 4/113 (3%)
Query: 111 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 170
L G H + + H + V L F ++ +
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW-FVSTGK 285
Query: 171 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
D + W S + S ++ + + D++ V+++
Sbjct: 286 DNLLNAWRTPYGASIFQS--KESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335
Score = 46.3 bits (108), Expect = 4e-06
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 107 QDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 166
+ + F S D L W T S ++ V + +YI
Sbjct: 269 LSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKYI-V 322
Query: 167 TGSADKTVALWDL 179
TGS DK ++++
Sbjct: 323 TGSGDKKATVYEV 335
Score = 46.3 bits (108), Expect = 4e-06
Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 140 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL----KLKLHSFESHKDE 195
+ +T++ H V ++ + + + + TG V +WD+ + + + +
Sbjct: 43 RQINTLN-HGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNY 99
Query: 196 IFQVQWSPHNETILASS 212
I + P T++
Sbjct: 100 IRSCKLLPDGCTLIVGG 116
Score = 39.0 bits (89), Expect = 7e-04
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 13/111 (11%)
Query: 169 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 228
D + R+ + ++++ +H + + V S + +G + VWD+S G
Sbjct: 29 PPDALIGPGIPRHAR-QINTL-NHGEVVCAVTISNPTRHVY--TGGKGCVKVWDISHPGN 84
Query: 229 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYC 279
+ P I P+ +I +
Sbjct: 85 KS---------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126
Score = 38.6 bits (88), Expect = 0.001
Identities = 15/143 (10%), Positives = 40/143 (27%), Gaps = 20/143 (13%)
Query: 131 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE 190
T+++ L + P E++ + L + K +
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK---YQLH 262
Query: 191 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 250
H+ + ++++ S+G D L+ W +
Sbjct: 263 LHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPY---------------GASIFQSKES 306
Query: 251 AKISDFSWNPNEPWVICSVSEDN 273
+ + + ++ + I + S D
Sbjct: 307 SSVLSCDISVDDKY-IVTGSGDK 328
Score = 28.2 bits (61), Expect = 1.7
Identities = 6/49 (12%), Positives = 12/49 (24%), Gaps = 2/49 (4%)
Query: 123 ADDQKLMIWDTRSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGS 169
+ +WD P +D + P ++ G
Sbjct: 69 GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 56.4 bits (134), Expect = 2e-09
Identities = 17/146 (11%), Positives = 41/146 (28%), Gaps = 3/146 (2%)
Query: 146 DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSP 203
A ++ + P L S D ++ ++ + L +K + +
Sbjct: 8 QAPKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 204 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 263
+ + + + DL Q+ + E G I+ E
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 264 WVICSVSEDNIMQEYCDSTDSDTKTM 289
+ + I + +S ++ K
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNK 152
Score = 45.6 bits (106), Expect = 6e-06
Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 189 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 248
++ KD I ++ P ++++L + D L V+ + L
Sbjct: 7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVD-----------LLQSLR 54
Query: 249 HTAKISDFSWNPNEPWVICSVSEDNIMQEYCDST 282
+ + ++ N I + + +
Sbjct: 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88
Score = 39.4 bits (90), Expect = 5e-04
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 140 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 199
+ + VN + F+P L T +D ++ W+L+ K K+ +F +E V
Sbjct: 242 RLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRK-KIKNFAKF-NEDSVV 298
Query: 200 QWSPHNETILASSGTD 215
+ + + + ++ D
Sbjct: 299 KIACSDNILCLATSDD 314
Score = 38.3 bits (87), Expect = 0.001
Identities = 10/98 (10%), Positives = 27/98 (27%), Gaps = 1/98 (1%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 167
D+ +SL + D L ++ + + + C +F ++ +
Sbjct: 16 DIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74
Query: 168 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 205
G+ + DL + + +
Sbjct: 75 GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD 112
Score = 30.6 bits (67), Expect = 0.33
Identities = 21/190 (11%), Positives = 53/190 (27%), Gaps = 8/190 (4%)
Query: 129 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 188
+ V + +T N + + L G + V + L + +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 189 FESHKDEIFQVQW--SPHNETILASSGTDRRLHVWDL-SKIGEEQSTEDAEDGPPELLFI 245
E + P + A S D R+ V + + S++ L
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 246 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRLDSIRSNGGISSTAS 305
++ ++P + + D I+ + + T+ + + N +
Sbjct: 247 DTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCW----NLQTRKKIKNFAKFNEDSVVKIA 301
Query: 306 PTASSTASES 315
+ + +
Sbjct: 302 CSDNILCLAT 311
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 54.1 bits (128), Expect = 1e-08
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 129 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 188
R + + S H ++ ++ S+ IL +GS + +++LR+ KL +
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN 319
Query: 189 FESHKDEIFQVQWSPHNETILASSGTDRR--LHVWDLS 224
D+I+ V + +T++A+ D + L + D S
Sbjct: 320 ILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILDFS 355
Score = 49.5 bits (116), Expect = 3e-07
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 143 HTVDAHTAEV-NCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 201
T+ H V CL F + TG+ DK + ++D N K L H ++ +++
Sbjct: 6 TTLRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKF-LLQLSGHDGGVWALKY 61
Query: 202 SPHNETILASSGTDRRLHVW 221
+ + S+ R+
Sbjct: 62 AHGGILVSGSTDRTVRVWDI 81
Score = 44.5 bits (103), Expect = 2e-05
Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 7/168 (4%)
Query: 115 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTV 174
++ + ADD+ + ++D+ + K + H V L + IL +GS D+TV
Sbjct: 22 EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTV 76
Query: 175 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 234
+WD++ + N + + D LHVW L K E +
Sbjct: 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK--ESSVPDH 134
Query: 235 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDST 282
E+ L+F S + ++ D+T
Sbjct: 135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182
Score = 33.3 bits (74), Expect = 0.047
Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 187 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 246
F H + + ++ IL S G++ + ++++L +
Sbjct: 275 RKFSYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANIL------------ 321
Query: 247 GGHTAKISDFSWNPNEPWVICSVSEDN 273
+I ++ ++ +V +D
Sbjct: 322 -KDADQIWSVNFKGK--TLVAAVEKDG 345
Score = 31.0 bits (68), Expect = 0.26
Identities = 9/96 (9%), Positives = 23/96 (23%), Gaps = 16/96 (16%)
Query: 185 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 244
+ + H + + + + D+ + V+D + L
Sbjct: 4 QRTTLRGHMTSVITC-LQF-EDNYVITGADDKMIRVYDSIN--------------KKFLL 47
Query: 245 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCD 280
GH + + V S + +
Sbjct: 48 QLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 83
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 53.0 bits (125), Expect = 2e-08
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 129 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 188
T + + E ++ATGS D + ++ ++ + +
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 253
Query: 189 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
+HKD + + W + L SSG D + W+
Sbjct: 254 LNAHKDGVNNLLWETPS--TLVSSGADACIKRWN 285
Score = 49.6 bits (116), Expect = 3e-07
Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 11/140 (7%)
Query: 140 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 199
+ T+ H + L+ NP L +GS D + W + + H + I +
Sbjct: 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS------MHQDHSNLIVSL 52
Query: 200 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 259
S E S +++ + G + A + + + + F+ +
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112
Query: 260 PNEPWVICSVSEDNIMQEYC 279
+ + S + +
Sbjct: 113 IIKSVRLNSPGSAVSLSQNY 132
Score = 31.5 bits (69), Expect = 0.17
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 15/87 (17%)
Query: 187 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 246
+ S K E ++A+ D + ++ + + P +++
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR-------------PMKIIKAL 254
Query: 247 GGHTAKISDFSWNPNEPWVICSVSEDN 273
H +++ W + S D
Sbjct: 255 NAHKDGVNNLLWETPS--TLVSSGADA 279
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 52.6 bits (124), Expect = 3e-08
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 2/166 (1%)
Query: 59 YKIWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFPFPLSRQDVAWHLLHESL 118
+ F + +DV +
Sbjct: 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 220
Query: 119 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 178
+V D+K+ +D +S K S+ AT AD T+ +WD
Sbjct: 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK-FATVGADATIRVWD 279
Query: 179 LRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
+ K ++ + + + QV + S D L+ ++L
Sbjct: 280 VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
Score = 43.4 bits (100), Expect = 3e-05
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 9/123 (7%)
Query: 148 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSFESH-KDEIFQVQWSP-H 204
LS++P + I V D + K+ + F H + V++SP
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 205 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 264
L S ++ VW + E S E ISD SW+
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS------EFQVLAGPISDISWDFEGRR 129
Query: 265 VIC 267
+
Sbjct: 130 LCV 132
Score = 41.4 bits (95), Expect = 1e-04
Identities = 15/187 (8%), Positives = 35/187 (18%), Gaps = 9/187 (4%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE-YILAT 167
+++ ++ + D V ++ V + F+P L +
Sbjct: 23 LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 82
Query: 168 GSADKTVALWDLRNLKLK-------LHSFESHKDEIFQVQWSPHNETIL-ASSGTDRRLH 219
G V +W K F+ I + W + G D
Sbjct: 83 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV 142
Query: 220 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYC 279
++ + + +
Sbjct: 143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 202
Query: 280 DSTDSDT 286
Sbjct: 203 KQGSFVR 209
Score = 33.0 bits (73), Expect = 0.068
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 13/164 (7%)
Query: 111 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 170
+V DD ++ + S T + V + F+P S + T +
Sbjct: 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226
Query: 171 DKTVALWDLRNLKLKLHSFESHKDEIFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEE 229
D+ ++ +D ++ + + + + + S + A+ G D + VWD+
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV------ 280
Query: 230 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ I S+S D
Sbjct: 281 ------TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Score = 32.2 bits (71), Expect = 0.12
Identities = 12/100 (12%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 191 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 250
+ ++ + + P I G + D D + P ++ G +
Sbjct: 15 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLD-----------DGDSKVPPVVQFTGHGS 63
Query: 251 AKISDFSWNPNEPW-VICSVSEDNIMQEYCDSTDSDTKTM 289
+ ++ ++P + +CS E + + + D ++ ++
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV 103
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 51.5 bits (121), Expect = 6e-08
Identities = 14/139 (10%), Positives = 37/139 (26%), Gaps = 1/139 (0%)
Query: 143 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 202
H + LS + + L + A+ + WD+ + H I ++ +
Sbjct: 6 QVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 203 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 262
+ S ++ S + ++ + P L + ++ +
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 263 PWVICSVSEDNIMQEYCDS 281
C +
Sbjct: 125 YSHGKLTEVPISYNSSCVA 143
Score = 42.7 bits (98), Expect = 4e-05
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 2/115 (1%)
Query: 111 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 170
+ F D + +I + ++N LATGS
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244
Query: 171 DKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 224
D +V +W++ + +H NET + S+G D + W++
Sbjct: 245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP 298
Score = 36.9 bits (83), Expect = 0.003
Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 14/83 (16%)
Query: 186 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 245
H I + S + L S+ + ++ WD+S G
Sbjct: 5 DQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDIST-GISNRV------------F 50
Query: 246 HGGHTAKISDFSWNPNEPWVICS 268
H I+ S
Sbjct: 51 PDVHATMITGIKTTSKGDLFTVS 73
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 50.2 bits (118), Expect = 2e-07
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%)
Query: 111 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 170
S + D + +WD + HT+ H + + + IL +G+A
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKDN---ILVSGNA 235
Query: 171 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 230
D TV +WD++ + +K + + ++ SS D + +WDL +
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-DGTVKLWDLKTGEFIR 294
Query: 231 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
+ E GG + + + V S +
Sbjct: 295 NLVTLES---------GGSGGVVWRIRASNTKL-VCAVGSRNG 327
Score = 49.4 bits (116), Expect = 4e-07
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 131 WDTRSHNVSKPSHTVDAHTAEVN-CLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF 189
W K + H V CL F + +GS D T+ +W K L +
Sbjct: 1 WRRGEL---KSPKVLKGHDDHVITCLQFCGN---RIVSGSDDNTLKVWSAVTGKC-LRTL 53
Query: 190 ESHKDEIFQVQWSPH 204
H ++ Q +
Sbjct: 54 VGHTGGVWSSQMRDN 68
Score = 33.6 bits (75), Expect = 0.039
Identities = 15/103 (14%), Positives = 22/103 (21%), Gaps = 17/103 (16%)
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 236
W LK + H D + + S D L VW
Sbjct: 1 WRRGELKSP-KVLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVT----------- 46
Query: 237 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYC 279
+ L GHT + N + +
Sbjct: 47 ---GKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 86
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 49.0 bits (116), Expect = 7e-07
Identities = 25/189 (13%), Positives = 61/189 (32%), Gaps = 14/189 (7%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
++ D ++ + D ++ + +D A V+ + Y L D V + DL
Sbjct: 37 TLRDAGQIALIDGSTY---EIKTVLDTGYA-VHISRLSASGRY-LFVIGRDGKVNMIDLW 91
Query: 181 NLKLK----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 236
+ + + ++ +A + + + D + ++
Sbjct: 92 MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151
Query: 237 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN--IMQEYCDSTDSDTKTMRLDSI 294
E + A I + P I +V E ++ +Y D + T + +
Sbjct: 152 MTYDEQEYHPEPRVAAILA---SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 208
Query: 295 RSNGGISST 303
+GG+ +
Sbjct: 209 LHDGGLDGS 217
Score = 33.2 bits (75), Expect = 0.063
Identities = 19/160 (11%), Positives = 49/160 (30%), Gaps = 11/160 (6%)
Query: 163 YILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 222
T +AL D ++ ++ + + S + L G D ++++ D
Sbjct: 33 LFSVTLRDAGQIALIDGSTYEI-KTVLDTGYA-VHISRLSA-SGRYLFVIGRDGKVNMID 89
Query: 223 L-----SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQE 277
L + + E + +A + A ++ P + ++ + + +
Sbjct: 90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG--AYWPPQYVIMDGETLEPKKIQ 147
Query: 278 YCDSTDSDTKTMRLDSIRSNGGISSTASPTASSTASESPT 317
D + + R ++S P E+
Sbjct: 148 STRGMTYDEQEYHPEP-RVAAILASHYRPEFIVNVKETGK 186
Score = 27.5 bits (60), Expect = 4.1
Identities = 16/152 (10%), Positives = 36/152 (23%), Gaps = 8/152 (5%)
Query: 108 DVAWHLLHESLFGSVADDQKLMIWDTRSHNV----SKPSHTVDA----HTAEVNCLSFNP 159
+ + +I D + S T D V + +
Sbjct: 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH 172
Query: 160 YSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 219
Y + + L D +L + S + + + + ++ +L
Sbjct: 173 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 232
Query: 220 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 251
V D + + P + H
Sbjct: 233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT 264
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 48.3 bits (113), Expect = 1e-06
Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 9/164 (5%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ A KL++ DT V K T+ P AT + +++ DL
Sbjct: 6 APARPDKLVVIDTEKMAVDK-VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64
Query: 181 NLKL----KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 236
+ L + E +F SP +T+ R + +
Sbjct: 65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV----QPTRVALY 120
Query: 237 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCD 280
D +I+ +W + + + ++M
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG 164
Score = 40.9 bits (94), Expect = 2e-04
Identities = 13/132 (9%), Positives = 34/132 (25%), Gaps = 10/132 (7%)
Query: 162 EYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
+ + + + D + + K+ + +P A+ L
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 221 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCD 280
DL GE D + + G + +P+ + S + + +
Sbjct: 61 IDLVT-GETLGRIDLSTPEERVKSLFG--------AALSPDGKTLAIYESPVRLELTHFE 111
Query: 281 STDSDTKTMRLD 292
+ +
Sbjct: 112 VQPTRVALYDAE 123
Score = 38.6 bits (88), Expect = 0.001
Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 8/124 (6%)
Query: 61 IWKKNTPFLYDLVVNNYVANISCILNISILFFEIIFTQNFPFPLSRQDVAWHLLHESLFG 120
+ D+ + A + +L + + E+ + + A + FG
Sbjct: 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG 257
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
L +D + V ++ + + G A +A +D
Sbjct: 258 ---AYNVLESFDLEKN---ASIKRVP-LPHSYYSVNVSTDGST-VWLGGALGDLAAYDAE 309
Query: 181 NLKL 184
L+
Sbjct: 310 TLEK 313
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 48.4 bits (114), Expect = 1e-06
Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 14/189 (7%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
++ D ++ + D S K +D A V+ + Y L D + + DL
Sbjct: 37 TLRDAGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRY-LLVIGRDARIDMIDLW 91
Query: 181 NLKLK----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 236
+ + + + +A + + + D + +Q
Sbjct: 92 AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151
Query: 237 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTMRLDSIRS 296
+ A I + P I +V E + + + +
Sbjct: 152 MTVDTQTYHPEPRVAAI---IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF 208
Query: 297 --NGGISST 303
+GG S+
Sbjct: 209 LADGGWDSS 217
Score = 32.2 bits (72), Expect = 0.13
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 18/112 (16%)
Query: 129 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA------TGSADKTVALWDLRNL 182
K + + +P S ++ ++VA++DL+NL
Sbjct: 283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 342
Query: 183 KL--------KLHSFESHKDEIFQVQWSPHNETILASSGT----DRRLHVWD 222
+ + Q +++ + + S L V D
Sbjct: 343 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 394
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 47.9 bits (112), Expect = 1e-06
Identities = 13/138 (9%), Positives = 43/138 (31%), Gaps = 13/138 (9%)
Query: 101 PFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSH-----TVDAHTAEVNCL 155
PF + + + ++ + + D + + + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 156 SFNPYSE--YILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 213
S + E + +D++ K+ K+ + ++ S + +
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-----TEVKNNLTDLRLSA-DRKTVMVRK 333
Query: 214 TDRRLHVWDLSKIGEEQS 231
D +++ + L K +E++
Sbjct: 334 DDGKIYTFPLEKPEDERT 351
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 47.2 bits (110), Expect = 2e-06
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 1/95 (1%)
Query: 129 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 188
D V + + + +A+ SADKT+ +W++ LK+ +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKT 275
Query: 189 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
Q + L S + ++ +
Sbjct: 276 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 38.3 bits (87), Expect = 0.001
Identities = 15/130 (11%), Positives = 31/130 (23%), Gaps = 4/130 (3%)
Query: 150 AEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 209
L P + I +V + +L + H + + SP +
Sbjct: 18 GTAVVLGNTPAGDKIQYC--NGTSVYTVPVGSLTD-TEIYTEHSHQTTVAKTSP-SGYYC 73
Query: 210 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 269
AS + +WD ++ T P + +I+ +
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 133
Query: 270 SEDNIMQEYC 279
Sbjct: 134 DTGTSNGNLT 143
Score = 36.0 bits (81), Expect = 0.006
Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 122 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR- 180
+ + S + H+ + +P Y A+G V +WD
Sbjct: 34 YCNGTSVYTVPVGS---LTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQ 89
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNE 206
+ + + + W ++
Sbjct: 90 TTHILKTTIPVFSGPVKDISWDSESK 115
Score = 31.8 bits (70), Expect = 0.13
Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 14/87 (16%)
Query: 187 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 246
+ T +AS+ D+ + +W+++ + + T + +
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKT----------IPVG 279
Query: 247 GGHTAKISDFSWNPNEPWVICSVSEDN 273
+ W + S+S +
Sbjct: 280 TRIEDQQLGIIWTKQ---ALVSISANG 303
Score = 27.9 bits (60), Expect = 2.1
Identities = 6/81 (7%), Positives = 22/81 (27%), Gaps = 17/81 (20%)
Query: 201 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 260
+P + I ++ + I+ H+ + + +P
Sbjct: 25 NTPAGDKIQ--YCNGTSVYTVPVGS--------------LTDTEIYTEHSHQTTVAKTSP 68
Query: 261 NEPWVICSVSEDNIMQEYCDS 281
+ + S ++ + +
Sbjct: 69 SGYY-CASGDVHGNVRIWDTT 88
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 46.9 bits (110), Expect = 2e-06
Identities = 13/160 (8%), Positives = 29/160 (18%), Gaps = 22/160 (13%)
Query: 118 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVAL 176
+ + + S C+ P + K + +
Sbjct: 88 RLYVANITPAASVTVIDAVSKKMLSEI-----DTAACVLAYPAGDDRFTALCESGKALTV 142
Query: 177 WDLRNLKLKLHSFESHKDEIFQVQWSPHN---ETILASSGTDRRLHVWDLSKIGEEQSTE 233
N K + ++ + + + + + D S
Sbjct: 143 TLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFS--------- 193
Query: 234 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 273
P T W P +V
Sbjct: 194 ---GDKPAFGKPWSLLTDAERAEGWRPGGMQQT-AVQAKQ 229
Score = 34.2 bits (77), Expect = 0.026
Identities = 15/152 (9%), Positives = 25/152 (16%), Gaps = 39/152 (25%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA-------------- 166
+ D + T + P A
Sbjct: 180 FTTYGGNVRSADFSGDKPA-FGKPWSLLTDAERAEGWRPGGMQQTAVQAKQNRYYVLMHK 238
Query: 167 ---------------TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 211
K + + + +Q S ++ +
Sbjct: 239 GTDGSHKDPGTQVWVYDLKSKQRVARWDLAQQKV--------EPLVSIQVSEDDKPLFYG 290
Query: 212 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 243
L V D G Q E LL
Sbjct: 291 LTATSDLVVMDART-GALQHVEKQIGNTSSLL 321
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 46.7 bits (109), Expect = 3e-06
Identities = 14/147 (9%), Positives = 38/147 (25%), Gaps = 9/147 (6%)
Query: 155 LSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 214
+ EY + + + + D+ + + K +P N T +
Sbjct: 2 PALKAGHEY-MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 215 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 274
++ DL + G + F+ +P+ V +V+
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSV--------PGEVGRSMYSFAISPDGKEVYATVNPTQR 112
Query: 275 MQEYCDSTDSDTKTMRLDSIRSNGGIS 301
+ ++ + +
Sbjct: 113 LNDHYVVKPPRLEVFSTADGLEAKPVR 139
Score = 42.0 bits (97), Expect = 9e-05
Identities = 17/112 (15%), Positives = 30/112 (26%), Gaps = 7/112 (6%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
L + D S V K S + P + + + DL
Sbjct: 13 VTNYPNNLHVVDVASDTVYK-SCVMP-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70
Query: 181 NLKLKLH-----SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 227
K H ++ SP + + A+ +RL+ + K
Sbjct: 71 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122
Score = 35.1 bits (79), Expect = 0.015
Identities = 23/222 (10%), Positives = 64/222 (28%), Gaps = 13/222 (5%)
Query: 72 LVVNNYVANISCILNISILFFEIIFTQNFPFPLSRQDVAWHLLHESLFGSVADDQKLMIW 131
++V NY N+ + + + + P + + + +
Sbjct: 11 MIVTNYPNNLHVV---DVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67
Query: 132 DTRSHNVSK---PSHTVDAHTAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLH 187
D + + S + + +P + + AT + + + ++ +L++
Sbjct: 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF 127
Query: 188 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 247
S + + + L + D L+V G + D + G + +
Sbjct: 128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-----GPDIYKMDVKTGKY-TVALPL 181
Query: 248 GHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTM 289
+ + + + W S + M D +
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 223
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 42.9 bits (99), Expect = 4e-05
Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 161 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
S + S +++ D+ + K+ + SP + ++ + +
Sbjct: 1 STFAYIANSESDNISVIDVTSNKV-TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSI 58
Query: 221 WDLSK 225
D +
Sbjct: 59 IDTAT 63
Score = 38.3 bits (87), Expect = 0.001
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 129 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 184
+K + + + ++ P + + S TV++ D +
Sbjct: 224 NTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278
Score = 37.9 bits (86), Expect = 0.002
Identities = 8/83 (9%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Query: 123 ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 182
++ + + D S+ V+ T+ + +P + + V++ D
Sbjct: 9 SESDNISVIDVTSNKVTA---TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 183 KLKLHSFESHKDEIFQVQWSPHN 205
+ + V
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQ 87
Score = 29.8 bits (65), Expect = 0.53
Identities = 11/111 (9%), Positives = 30/111 (27%), Gaps = 1/111 (0%)
Query: 129 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 188
+ + V+ A + ++ NP T + + K+ +
Sbjct: 179 SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238
Query: 189 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ + +P + + + + V D + +T P
Sbjct: 239 RIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT-NTITATMAVGKNP 288
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 42.5 bits (98), Expect = 5e-05
Identities = 9/122 (7%), Positives = 32/122 (26%), Gaps = 4/122 (3%)
Query: 162 EYILATGSADKTVALWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 220
+ + + + +W+L L L ++ + SP + + R+
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63
Query: 221 WDLSK---IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQE 277
+ ++ + + H G + ++ + ++
Sbjct: 64 YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123
Query: 278 YC 279
Sbjct: 124 VE 125
Score = 36.0 bits (81), Expect = 0.007
Identities = 9/87 (10%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL- 179
+ + Q++ +W+ + VD +V + +P Y+ + V + +
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 180 -RNLKLKLHSFESHKDEIFQVQWSPHN 205
+ L + + + +
Sbjct: 68 PDDGALTFAAESALPGSLTHISTDHQG 94
Score = 27.1 bits (58), Expect = 4.4
Identities = 8/101 (7%), Positives = 29/101 (28%), Gaps = 2/101 (1%)
Query: 125 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL--RNL 182
+ K + + T + P ++ A + ++ +
Sbjct: 205 ELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS 264
Query: 183 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 223
L F+ + + + ++A+ + V+++
Sbjct: 265 VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305
Score = 26.3 bits (56), Expect = 8.6
Identities = 25/184 (13%), Positives = 55/184 (29%), Gaps = 1/184 (0%)
Query: 97 TQNFPFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS 156
TQ P Q + L+ V + +++ + + + A + +S
Sbjct: 30 TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIS 89
Query: 157 FNPYSEYILATGSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 215
+ +++ V++ L + + D SP N T+ +
Sbjct: 90 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ 149
Query: 216 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 275
R+ ++ +S G + + AE E +++ NE V E
Sbjct: 150 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209
Query: 276 QEYC 279
Sbjct: 210 HGNI 213
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 39.2 bits (91), Expect = 7e-05
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W++ E + Y F +L P +SG + NSKLPV L ++W
Sbjct: 2 WAVKPEDKAKYDAIFDSL-------SPVNGFLSGDKVKPVLLNSKLPVDILGRVW 49
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 41.3 bits (95), Expect = 1e-04
Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Query: 121 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 180
+ + R+ A+ ++ + +A + V + D +
Sbjct: 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 288
Query: 181 NLKLKLHSFESHKDEIFQVQWSPHNETIL-ASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 239
+ L FE + I + S + +L A S D+ L++ D GEE + +
Sbjct: 289 TGER-LAKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQLGHG 345
Query: 240 PELLFIH 246
P+++
Sbjct: 346 PQVITTA 352
Score = 37.5 bits (85), Expect = 0.003
Identities = 8/77 (10%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 109 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL-AT 167
+ + + + +++ D ++ + + E++ ++ + + +L A
Sbjct: 263 IYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFE-MGHEIDSINVSQDEKPLLYAL 318
Query: 168 GSADKTVALWDLRNLKL 184
+ DKT+ + D + +
Sbjct: 319 STGDKTLYIHDAESGEE 335
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 36.8 bits (85), Expect = 0.005
Identities = 20/180 (11%), Positives = 48/180 (26%), Gaps = 14/180 (7%)
Query: 116 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 175
+S G ++ I + D H ++ +Y+ A+ VA
Sbjct: 43 DSATGWGITNESKEILGG-----DQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVA 97
Query: 176 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH------VWDLSKIGEE 229
L +K + + I ++ +T + + + L
Sbjct: 98 RIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM 157
Query: 230 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQEYCDSTDSDTKTM 289
+ DAE I G + + + + + + + +D +
Sbjct: 158 FTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWV 214
Score = 27.9 bits (62), Expect = 2.5
Identities = 14/123 (11%), Positives = 40/123 (32%), Gaps = 13/123 (10%)
Query: 122 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN 181
+ D + ++ S+ + + + +P +Y +A G TV++ +
Sbjct: 234 IGDSKVPVVDGRGE---SEFTRYIPVPKNPHGL-NTSPDGKYFIANGKLSPTVSVIAIDK 289
Query: 182 LKLKLHSFESHKDEIF---QVQWSP------HNETILASSGTDRRLHVWDLSKIGEEQST 232
L +D I ++ P + D ++ W+++ + +
Sbjct: 290 LDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNG 349
Query: 233 EDA 235
+
Sbjct: 350 DRV 352
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 92
Score = 33.9 bits (77), Expect = 0.006
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W +TDEQR+YY QF +Q + I G A++FF SKLP+ EL IW
Sbjct: 1 WKITDEQRQYYVNQFKTIQPDLN------GFIPGSAAKEFFTKSKLPILELSHIW 49
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 29.2 bits (65), Expect = 0.24
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 369 WSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPVTELRKIW 423
W ++ ++ Y F + +SG R+ F + LP T L IW
Sbjct: 2 WVVSPAEKAKYDEIFLKTDKDMD------GFVSGLEVREIFLKTGLPSTLLAHIW 50
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 27.3 bits (60), Expect = 1.4
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 357 SSDNDTEDLNSIWSMTDEQREYYKTQFHNLQRHKSVSDPSYHLISGQVARKFFENSKLPV 416
S +++ + W +T+EQREYY QF +LQ S ISG VA+ FF SKL +
Sbjct: 2 SLQDNSSYPDEPWRITEEQREYYVNQFRSLQPDPS------SFISGSVAKNFFTKSKLSI 55
Query: 417 TELRKIW 423
EL IW
Sbjct: 56 PELSYIW 62
>d1tx3a1 c.52.1.19 (A:2-258) Restriction endonuclease HincII
{Haemophilus influenzae [TaxId: 727]}
Length = 257
Score = 26.1 bits (57), Expect = 8.1
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 42 VAEPFDDAVEERVINEEYKIWKKNTPFLYDLVVNN-----YVANISCILNISILFF---- 92
EPF+ V + + + K +L DL + N + A + ++LF
Sbjct: 32 AGEPFEKLVYKFLKENLSDLTFKQYEYLNDLFMKNPAIIGHEARYKLFNSPTLLFLLSRG 91
Query: 93 ---EIIFTQNFPFPLSRQDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSH 143
++ F + D A L + DQ + D ++ N+SK +
Sbjct: 92 KAATENWSIENLFEEKQNDTADIL--------LVKDQFYELLDVKTRNISKSAQ 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.398
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,601,955
Number of extensions: 70495
Number of successful extensions: 443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 114
Length of query: 437
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 349
Effective length of database: 1,199,356
Effective search space: 418575244
Effective search space used: 418575244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)