BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4572
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
P+KC C K F +++ L RH++ HT EK + C C K F +A H +H + + C
Sbjct: 49 PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
+C ++ +LR H + H E C C + F D L TH G +PY+C C
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 166 KLFLSKYSLFTHNKKHL 182
K F + +L H + H
Sbjct: 169 KSFSRRDALNVHQRTHT 185
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
P+ C C K F L H++ HT EK + C C K F K H +H + +KC
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
+C + LR H + H E C C + F L H G +PY+C C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 166 KLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSL 207
K F + +L TH + H + Y+C CGKSF+ + ++
Sbjct: 141 KSFSREDNLHTHQRTHTGEKP---YKCPECGKSFSRRDALNV 179
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Query: 72 EKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSA 131
EK + C C K F EH +H + +KC +C K L H + H E
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 132 YCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQ 191
C C + F R L H G +PY C C K F L H + H + Y+
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP---YK 135
Query: 192 CELCGKSFNNK 202
C CGKSF+ +
Sbjct: 136 CPECGKSFSRE 146
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS 206
G +PY C C K F L H + H + Y+C CGKSF++K+ +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKP---YKCPECGKSFSDKKDLT 66
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKT 74
P+KC C K F R AL H++ HT +KT
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%)
Query: 45 GPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFK 104
GPHKCE C K F + LK H + HT K + C C + +H+ H + FK
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 105 CDQCPYVAKRIKYLRYHMKKHRKE 128
C CPY ++ L H++ H +
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGD 90
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPI--EERLHY 190
CE C + F +DKL+TH G +PY+C+TC SL KHL I +ER +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSL----NKHLRIHSDERP-F 65
Query: 191 QCELC 195
+C++C
Sbjct: 66 KCQIC 70
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDS 101
P+KC+ C+ + +L +H + H+ E+ F C +C + +Q H+ SH DS
Sbjct: 36 PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 77 CTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPC 136
C VC K F K + + H+ H +KC C Y A L H++ H E C+ C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 156 AQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC 195
+ P++CE C K F K L TH + H ++ Y+C+ C
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP---YKCKTC 42
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.7 bits (130), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 43 LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
++ P+ C E C++ F +L RH + HT +K F C +C++ F HI +H +
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
F CD C R + H K H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 28 SGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTK 87
SG + + R T QK P +C C + F L H + HT EK F C +C + F
Sbjct: 19 SGSLTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75
Query: 88 AQREEHIASHV 98
+R+ H H+
Sbjct: 76 DERKRHTKIHL 86
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
+ Y+ E C F L H G +P+QC C + F L TH + H +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 187 RLHYQCELCGKSF 199
+ C++CG+ F
Sbjct: 63 ---FACDICGRKF 72
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTH 177
L H++ H + C C F D L TH G +P+ C+ C + F H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 178 NKKHL 182
K HL
Sbjct: 82 TKIHL 86
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 54.7 bits (130), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 43 LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
++ P+ C E C++ F + L RH + HT +K F C +C++ F HI +H +
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
F CD C R + H K H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 28 SGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTK 87
S + + R T QK P +C C + F L H + HT EK F C +C + F
Sbjct: 19 SSNLTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75
Query: 88 AQREEHIASHV 98
+R+ H H+
Sbjct: 76 DERKRHTKIHL 86
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
+ Y+ E C F L H G +P+QC C + F L TH + H +
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 187 RLHYQCELCGKSF 199
+ C++CG+ F
Sbjct: 63 ---FACDICGRKF 72
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTH 177
L H++ H + C C F D L TH G +P+ C+ C + F H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 178 NKKHL 182
K HL
Sbjct: 82 TKIHL 86
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.3 bits (129), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 43 LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
++ P+ C E C++ F L RH + HT +K F C +C++ F HI +H +
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
F CD C R + H K H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 28 SGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTK 87
S E+ + R T QK P +C C + F L H + HT EK F C +C + F
Sbjct: 19 SDELTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75
Query: 88 AQREEHIASHV 98
+R+ H H+
Sbjct: 76 DERKRHTKIHL 86
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
+ Y+ E C F D+L H G +P+QC C + F L TH + H +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 187 RLHYQCELCGKSF 199
+ C++CG+ F
Sbjct: 63 ---FACDICGRKF 72
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 29/77 (37%)
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
+ C R L H++ H + C C F D L TH G +P+ C+ C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 166 KLFLSKYSLFTHNKKHL 182
+ F H K HL
Sbjct: 70 RKFARSDERKRHTKIHL 86
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 54.3 bits (129), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 43 LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
++ P+ C E C++ F L RH + HT +K F C +C++ F HI +H +
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
F CD C R + H K H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 28 SGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTK 87
S E+ + R T QK P +C C + F L H + HT EK F C +C + F
Sbjct: 19 SAELTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75
Query: 88 AQREEHIASHV 98
+R+ H H+
Sbjct: 76 DERKRHTKIHL 86
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 29/77 (37%)
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
+ C R L H++ H + C C F D L TH G +P+ C+ C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 166 KLFLSKYSLFTHNKKHL 182
+ F H K HL
Sbjct: 70 RKFARSDERKRHTKIHL 86
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
+ Y+ E C F +L H G +P+QC C + F L TH + H +
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 187 RLHYQCELCGKSF 199
+ C++CG+ F
Sbjct: 63 ---FACDICGRKF 72
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 43 LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
++ P+ C E C++ F L RH + HT +K F C +C++ F HI +H +
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
F CD C R + H K H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 28 SGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTK 87
S ++ + R T QK P +C C + F L H + HT EK F C +C + F
Sbjct: 19 SADLTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75
Query: 88 AQREEHIASHV 98
+R+ H H+
Sbjct: 76 DERKRHTKIHL 86
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 29/77 (37%)
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
+ C R L H++ H + C C F D L TH G +P+ C+ C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 166 KLFLSKYSLFTHNKKHL 182
+ F H K HL
Sbjct: 70 RKFARSDERKRHTKIHL 86
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
+ Y+ E C F L H G +P+QC C + F L TH + H +
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 187 RLHYQCELCGKSF 199
+ C++CG+ F
Sbjct: 63 ---FACDICGRKF 72
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 46 PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
P+ C E C++ F L RH + HT +K F C +C++ F HI +H + F
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 104 KCDQCPYVAKRIKYLRYHMKKHRKE 128
CD C R + H K H ++
Sbjct: 63 ACDICGRKFARSDERKRHTKIHLRQ 87
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
+ Y+ E C F D+L H G +P+QC C + F L TH + H +
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 187 RLHYQCELCGKSF 199
+ C++CG+ F
Sbjct: 62 ---FACDICGRKF 71
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 29/77 (37%)
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
+ C R L H++ H + C C F D L TH G +P+ C+ C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 166 KLFLSKYSLFTHNKKHL 182
+ F H K HL
Sbjct: 69 RKFARSDERKRHTKIHL 85
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 43 LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
++ P+ C E C++ F + L H + HT +K F C +C++ F +A HI +H +
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 101 SEFKCDQC----PYVAKRIKYLRYHMKK 124
F CD C + R ++ + H+++
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
+ Y+ E C F + L+TH G +P+QC C + F + SL H + H +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 187 RLHYQCELCGKSFNNKQT 204
+ C++CG+ F T
Sbjct: 63 ---FACDICGRKFATLHT 77
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIA 95
R T QK P +C C + F + +L H + HT EK F C +C + F T R H
Sbjct: 27 RIHTGQK---PFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK 83
Query: 96 SHV 98
H+
Sbjct: 84 IHL 86
Score = 35.8 bits (81), Expect = 0.032, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTH 177
L H++ H + C C F + L H G +P+ C+ C + F + ++ H
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRH 81
Query: 178 NKKHL 182
K HL
Sbjct: 82 TKIHL 86
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 46 PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
P+ C E C++ F L RH + HT +K F C +C++ F HI +H + F
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 104 KCDQCPYVAKRIKYLRYHMKKH 125
CD C R + H K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 28 SGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTK 87
S E+ + R T QK P +C C + F L H + HT EK F C +C + F
Sbjct: 19 SDELTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75
Query: 88 AQREEHIASHV 98
+R+ H H+
Sbjct: 76 DERKRHTKIHL 86
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 125 HRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPI 184
H + Y+ E C F D+L H G +P+QC C + F L TH + H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 185 EERLHYQCELCGKSF 199
+ + C++CG+ F
Sbjct: 61 KP---FACDICGRKF 72
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 29/77 (37%)
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
+ C R L H++ H + C C F D L TH G +P+ C+ C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 166 KLFLSKYSLFTHNKKHL 182
+ F H K HL
Sbjct: 70 RKFARSDERKRHTKIHL 86
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 48 KCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHV---TDSEFK 104
+C C K+F ++ LK H + HT EK F C C K + K EH A + ++ F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 105 CDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGA 156
C C +R LR HM H E C C + F + L++H I H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 31 VKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHT---QEKTFPCTVCLKMFKTK 87
+K +RK T +K P +C C K + + L HE + E+ F C+VC + F+ +
Sbjct: 23 LKVHNRKHTGEK---PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRR 79
Query: 88 AQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKK 124
+ H+ SH + +KC C + K L+ HM K
Sbjct: 80 MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQC 192
C C + F S+ L+ HN G +P++C C K + K +L H ++ + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 193 ELCGKSFNNKQTFSL 207
+C ++F + L
Sbjct: 70 SVCQETFRRRMELRL 84
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQ 203
G+ +C TC K FLSKY L HN+KH + ++C CGK + K+
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP---FECPKCGKCYFRKE 49
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 107 QCPYVAKRI---KYLRYHMKKHRKEYSAYCEPCQEGFFSRDKL---ETHNIAKHGAQPYQ 160
+CP K+ YL+ H +KH E C C + +F ++ L E N Q +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 161 CETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQ 203
C C++ F + L H H + Y+C C + F K+
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTG---EMPYKCSSCSQQFMQKK 108
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 43 LDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSE 102
++ P+KC C K F L++H++ HT EK + C C K F + ++H +H +
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHR 126
+KC +C R +L H + H+
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQC 192
C C + F L+ H G +PY+C C K F L H + H + Y+C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP---YKC 63
Query: 193 ELCGKSFN 200
CGKSF+
Sbjct: 64 PECGKSFS 71
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCE 162
+KC +C + L+ H + H E C C + F L+ H G +PY+C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 163 TCRKLFLSKYSLFTHNKKH 181
C K F L H + H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%)
Query: 72 EKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSA 131
EK + C C K F + ++H +H + +KC +C + L+ H + H E
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 132 YCEPCQEGFFSRDKLETHN 150
C C + F D L H
Sbjct: 62 KCPECGKSFSRSDHLSRHQ 80
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 43 LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
++ P+ C E C++ F + L H + HT +K F C +C++ F +HI +H +
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
F CD C + H K H ++
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIA 95
R T QK P +C C + F L +H + HT EK F C +C + F T R+ H
Sbjct: 27 RIHTGQK---PFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK 83
Query: 96 SHV 98
H+
Sbjct: 84 IHL 86
Score = 41.2 bits (95), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
+ Y+ E C F + L+TH G +P+QC C + F L H + H +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 187 RLHYQCELCGKSFNNKQT 204
+ C++CG+ F T
Sbjct: 63 ---FACDICGRKFATLHT 77
Score = 34.7 bits (78), Expect = 0.073, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTH 177
L H++ H + C C F L H G +P+ C+ C + F + ++ H
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRH 81
Query: 178 NKKHL 182
K HL
Sbjct: 82 TKIHL 86
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 40 PQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVT 99
P K C+ C + F L HE+ HT E+ + C +C K F+ + +H H
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 100 DSEFKCDQC 108
+ FKC +C
Sbjct: 71 EKPFKCQEC 79
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 34/84 (40%)
Query: 99 TDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQP 158
T EF C C + L H + H E C+ C + F +D L H +P
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 159 YQCETCRKLFLSKYSLFTHNKKHL 182
++C+ C K F +L H H+
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHM 97
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%)
Query: 72 EKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSA 131
+K F C C + F H +H + + CD C +R +LR H H KE
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 132 YCEPCQEGFFSRDKLETH 149
C+ C +GF L H
Sbjct: 75 KCQECGKGFCQSRTLAVH 92
Score = 35.0 bits (79), Expect = 0.066, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 124 KHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLP 183
K +KE+ C+ C F L H +PY C+ C K F + L H H
Sbjct: 13 KTKKEF--ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH-- 68
Query: 184 IEERLHYQCELCGKSFNNKQTFSL 207
+ ++C+ CGK F +T ++
Sbjct: 69 -SKEKPFKCQECGKGFCQSRTLAV 91
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 47 HKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSE 102
H C++ C K + LK H + HT EK + C C F + H H
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 103 FKCDQCPYVAKRIKYLRYHMKKH 125
F+C +C R +L HMK+H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 105 CDQ--CPYVAKRIKYLRYHMKKHRKEYSAYCE--PCQEGFFSRDKLETHNIAKHGAQPYQ 160
CD C + +L+ H++ H E +C+ C F D+L H G +P+Q
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 161 CETCRKLFLSKYSLFTHNKKHL 182
C+ C + F L H K+H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRHF 90
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 42 KLDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASH 97
K H C++ C K + LK H + HT EK + C C F + H H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 98 VTDSEFKCDQCPYVAKRIKYLRYHMKKH 125
F+C +C R +L HMK+H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 105 CDQ--CPYVAKRIKYLRYHMKKHRKEYSAYCE--PCQEGFFSRDKLETHNIAKHGAQPYQ 160
CD C + +L+ H++ H E +C+ C F D+L H G +P+Q
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 161 CETCRKLFLSKYSLFTHNKKHL 182
C+ C + F L H K+H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH--VTDSEFKCD 106
CE C K F + L RH+ +H+ EK + C VC FK K + H+ SH + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 107 QCPYVAKRIKYLRYHMKK 124
C R +L H+K+
Sbjct: 70 SCGKGFSRPDHLNGHIKQ 87
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 77 CTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSA--YCE 134
C +C K+F+ H SH + + C C KR + YH++ H C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 135 PCQEGFFSRDKLETH 149
C +GF D L H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQC 192
CE C + F L H ++ G +PY C C F K + H + H + Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP-YIC 68
Query: 193 ELCGKSFN 200
+ CGK F+
Sbjct: 69 QSCGKGFS 76
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS 206
G+ CE C K+F Y L H H + Y C +CG F K S
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKP---YSCPVCGLRFKRKDRMS 52
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 35 SRKSTPQKLDGPHKCE--HCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREE 92
SRK T +K P++C+ CE+ F LKRH++ HT K F C C + F +
Sbjct: 28 SRKHTGEK---PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84
Query: 93 HIASHVTDSEFKC 105
H +H + F C
Sbjct: 85 HTRTHTGEKPFSC 97
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 114 RIKYLRYHMKKHRKEYSAYCE--PCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSK 171
++ +L+ H +KH E C+ C+ F D+L+ H G +P+QC+TC++ F
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRS 79
Query: 172 YSLFTHNKKH 181
L TH + H
Sbjct: 80 DHLKTHTRTH 89
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 93 HIASHVTDSEFKCD--QCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHN 150
H H + ++CD C R L+ H ++H C+ CQ F D L+TH
Sbjct: 27 HSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Query: 151 IAKHGAQPYQCE--TCRKLFLSKYSLFTHNKKH 181
G +P+ C +C+K F L H+ H
Sbjct: 87 RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 62 LKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLR 119
L+ H + HT EK + C C + F Q + H H F+C C R +L+
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 120 YHMKKH--RKEYSAYCEPCQEGFFSRDKLETHN 150
H + H K +S CQ+ F D+L H+
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
D P+KC+ C+ F + L H+ HT EK + C +C F A + H H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
C+ CQ F + L +H G +PY+C C F +L TH + H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFN 200
+PY+C+ C+ F K +L +H H + Y+C +CG FN
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKP---YRCNICGAQFN 56
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 72 EKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
+K + C C F+ K H H + ++C+ C R L+ H + H E
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCE 162
F C C KR L H+ H C+ C + F + ++ H G +P++C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 163 TCRKLFLSKYSLFTHNKKH 181
C K F +L TH++KH
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC 108
C+ C K F+ L H H+ + +PC C K F K+ ++H H + KC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 109 PYVAKRIKYLRYHMKKH 125
+ L H +KH
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
P+ C++C K F + +K+H HT EK C VC K F
Sbjct: 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAF 67
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIE--ERLHY 190
C+ C + F L TH + +PY C+ C K F K + KKH I E+ H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDM----KKHTFIHTGEKPH- 58
Query: 191 QCELCGKSFNN 201
+C++CGK+F+
Sbjct: 59 KCQVCGKAFSQ 69
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTK 87
CE C + F + LKRH ++HT EK +PC +C + F +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR 43
Score = 31.6 bits (70), Expect = 0.62, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 130 SAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKK 180
S CE C F ++ L+ H + +PY C C + F + L H +K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 74 TFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKK 124
+F C VC + F + + H SH + + C C R L H +K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 135 PCQEG--FFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQC 192
PCQ G F + + + H G +PY C C K F K+ L H K H I+ Y+C
Sbjct: 12 PCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP---YEC 68
Query: 193 ELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSN 233
+C K F + +F + +V S + Y + + S
Sbjct: 69 NICAKRFMWRDSF---HRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 70 TQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEY 129
+ +K +PC C K F K+QR+ H++ H+ + C C K +L HMK H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 130 SAYCEPCQEGFFSRDKLETH 149
C C + F RD H
Sbjct: 65 PYECNICAKRFMWRDSFHRH 84
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIAS 96
P+ C C K+F+ + L H K HT K + C +C K F + H+ S
Sbjct: 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 52 CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYV 111
C K F ++ RH H + + C VC K FK K H+ H ++C+ C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC--- 71
Query: 112 AKRIKY 117
AKR +
Sbjct: 72 AKRFMW 77
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 77 CTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRK 127
C+ C K F++ H+ +H + +KC+ C Y A + LRYH+++H K
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 123 KKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
++ R+ Y C+ C + F L H G +PY+C+ C K F+ + L H++ H
Sbjct: 13 QRERRRYK--CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 47 HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+KC+ C K F + L +H + HT EK + C C K F QR I H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF---IQRSHLIGHH 66
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQP 158
+KCD+C L H + H E C+ C + F R L H+ G+ P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 20 ENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHT 70
E G S ++ K R T +K P+KC+ C K F R L H + HT
Sbjct: 23 ECGKSFSHSSDLSKHRRTHTGEK---PYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKH 125
E + + + C C K F + +H +H + +KCD+C + +L H + H
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 159 YQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF 199
Y+C+ C K F L H + H + Y+C+ CGK+F
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP---YKCDECGKAF 56
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
P +C C + F L H + HT EK F C +C + F +R+ H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 73 KTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC 108
K F C +C++ F HI +H + F CD C
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 37
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERL 188
C C F D L TH G +P+ C+ C + K++ K+H I+ L
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR----KFARSDERKRHRDIQHIL 57
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF 199
+P+QC C + F L TH + H + + C++CG+ F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKF 41
Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH 154
F+C C R +L H++ H E C+ C F D+ + H +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 52 CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC 108
C++ + +L+RH H+ EK +PC C K+F R +H H + ++C C
Sbjct: 28 CKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLF-LSKYSLFTHNKKHLPIEERLHYQ 191
C C+ + L H + Y C C K+F L++Y T ++ H E R YQ
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYR--TKHEIHHTGERR--YQ 80
Query: 192 CELCGKSFNNKQTFS 206
C CGKSF N Q S
Sbjct: 81 CLACGKSFINYQFMS 95
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIAS 96
C +CEK F +HE +HT E+ + C C K F HI S
Sbjct: 53 CRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKS 100
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 75 FPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCE 134
+ C VC + + H H + ++ C C V +Y H H E C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 135 PCQEGFFSRDKLETHNIAKHGAQP------YQCETCRKLFLSKYSLFT 176
C + F + + +H + H P Y+ CR L + +Y+ +
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAYLS 130
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 45 GP--HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTD 100
GP H C C K F LKRH+ HT EK F CT C K F H+ H D
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Query: 101 SEFKC--DQCPYVAKRIKYLRYHMKKHRK 127
+ C D C + L+ H+ H K
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQC--ETCRKLFLSKYSLF 175
+R H+ H C C + F KL+ H + G +P+QC E C K F ++L
Sbjct: 23 MRKHLHTHGPRVHV-CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 176 THNKKH 181
TH + H
Sbjct: 82 THVRIH 87
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 16/161 (9%)
Query: 52 CEKEFENRRALKRHEKNHTQEKTFPCT--VCLKMFKTKAQREEHIASHVTDSEFKCDQCP 109
C + L+ H HT EK FPC C K F + H +H + F CD
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS-- 77
Query: 110 YVAKRIKY-LRYHMKKHRKE--------YSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQ 160
+++ + +MKKH Y + E C + F ++L+ H + PY+
Sbjct: 78 -DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE 136
Query: 161 C--ETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF 199
C E C K F L H K H + C GK++
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 46 PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHV 98
P+ C E C++ F L RH + HT +K F C +C++ F R +H+ +H+
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF----SRSDHLTTHI 69
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
+ Y+ E C F D+L H G +P+QC C + F L TH + H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 105 CD--QCPYVAKRIKYLRYHMKKHRKE--YSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQ 160
CD C V + +L+ H++ H E Y E C F D+L H GA+P+Q
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 161 CETCRKLFLSKYSLFTHNKKH 181
C C + F L H K+H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 47 HKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSE 102
H C++ C K + LK H + HT EK + CT C F + H H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHR 126
F+C C R +L HMK+H+
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 46 PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHV 98
P+KC E C+ F L RH + HT K F C VC + F R +H+A H+
Sbjct: 45 PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF----SRSDHLALHM 95
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 132 YCE--PCQEGFFSRDKLETHNIAKHGAQPYQC--ETCRKLFLSKYSLFTHNKKHLPIEER 187
YC+ C + + L+ H G +PY+C E C F L H +KH +
Sbjct: 17 YCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP- 75
Query: 188 LHYQCELCGKSFNNKQTFSL 207
+QC +C +SF+ +L
Sbjct: 76 --FQCGVCNRSFSRSDHLAL 93
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEH 93
P K E CEK F + L RH HT EK F C C F TKA ++H
Sbjct: 35 PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 52 CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEFKCD 106
C + L+ H HT EK FPC C K F + H +H + F CD
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
Score = 31.2 bits (69), Expect = 0.93, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 118 LRYHMKKHRKEYSAYC--EPCQEGFFSRDKLETHNIAKHGAQPYQCET--CRKLFLSKYS 173
L+ H+ KH E C E C++GF S L H++ G + + C++ C F +K +
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 80
Query: 174 LFTH-NKKH 181
+ H N+ H
Sbjct: 81 MKKHFNRFH 89
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 36.2 bits (82), Expect = 0.024, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF 199
G+ QCE C K SL H +KH L + CE CGK F
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF 48
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAY---CEPCQEGFFSRDKLETHNIAKHGA 156
S +C+ C + ++ L +H +KH + +A CE C + F D + H H A
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKK-HLPIEERLHYQCELCGKSFNNKQTFS 206
G +PY C C K F K L H K+ H P + C CGK+F + T +
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 26 GSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFP----CTVCL 81
GSSG R T +K P+ C HC+K F ++ L H K + P C+ C
Sbjct: 1 GSSGS---SGRTHTGEK---PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCG 54
Query: 82 KMFKTKAQREEH 93
K F + H
Sbjct: 55 KTFTRRNTMARH 66
Score = 28.1 bits (61), Expect = 8.2, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 67 KNHTQEKTFPCTVCLKMFKTKAQREEHIASH----VTDSEFKCDQCPYVAKRIKYLRYH 121
+ HT EK + C+ C K F+ K + H + + F C +C R + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 35.0 bits (79), Expect = 0.068, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+ C HC+++F + AL+RH + HT EK
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 52 CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTD 100
C K F LK H++ HT EK F C C + F + R++H+ H +D
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 50 EHCEKE---FENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEFK 104
E C +E F+ + L H + HT EK FPC C K+F + H +H + FK
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 105 CD 106
C+
Sbjct: 123 CE 124
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
P+ C C K F L +H++ HT EK + C C K F
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
C C + F L H G +PY+C C K F L H + H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 12/48 (25%)
Query: 26 GSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEK 73
GSSG +K P +C+ C+K F R AL H HT EK
Sbjct: 4 GSSGTAEK------------PFRCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P +C HC K F + L H++ HT EK+ P +
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 45 GPHKCEHCEKEFENRRALKRHEKNHTQEK 73
GP KC C K+F LKRH + H+ EK
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+C C K F + +LFTH K H
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 31.6 bits (70), Expect = 0.60, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P++C C K F +R L H+K HT EK
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like
Domains(493-575) Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 102 EFKCDQCPYVAKR-IKYLRYHMKKHRKEYSAY-CEPCQEGFFSRDKLETHNIAKHGAQPY 159
E C C V ++ + L+ HM+ +K A C+ C++ F S+ L H +A+H A+P
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
Query: 160 QCE 162
E
Sbjct: 84 DAE 86
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 41 QKLDGPHKCEHCEKEFENRRALKRH 65
QKL KC+HC K+F+++ L H
Sbjct: 49 QKLQDALKCQHCRKQFKSKAGLNYH 73
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 23/55 (41%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEER 187
C C E F S+ E H H AQ + C+ C F S L H K P E R
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSENR 85
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 47 HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHI 94
H C C + F ++ A +RH + + FPC C F + HI
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIAS 96
CE C + LK+H + HT + + CT C FKTK +H+ S
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.00, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P++C+ C K F + L +H+K HT EK
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 28.5 bits (62), Expect = 5.2, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+C+ C K F K L H K H
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTH 35
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 158 PYQCETCRKLFLSKYSLFTHNKKH 181
PY+C C K F KY L +H + H
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTH 35
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC CEK F + L H++ HT+EK
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREK 39
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
PHKC C K F L +H++ HT EK
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 26 GSSGEVKKRSRKSTPQKLDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CL 81
GSSG SR + H C H C K + LK H + HT EK F C+ C
Sbjct: 4 GSSGPQIDSSRIRS-------HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCE 56
Query: 82 KMFKTKAQREEHIASH 97
+ F + H +H
Sbjct: 57 RRFARSDELSRHRRTH 72
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 67 KNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD--SEFKCDQCPYVAKRIKYLRYHMKK 124
+ H+ EK + C +C F + HI T+ ++F C C V R L H++K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 36 RKSTPQKLDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPC--TVCLKMFKTKAQRE 91
R+ T +K PHKC E C K + LK H ++HT EK + C C K F + R
Sbjct: 60 RRHTGEK---PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 92 EHI-ASHVTDSEFKCDQCPYVAKRI---KYLRYHMK 123
+H +H + + C + P KR LR H+K
Sbjct: 117 KHQNRTHSNEKPYVC-KLPGCTKRYTDPSSLRKHVK 151
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 80 CLKMFKTKAQREEHIAS---HVTDSEFKC--DQC-----PYVAKRIKYLRYHMKKHRKEY 129
C + F ++ Q HI S H EF C C P+ A+ + L HM++H E
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM--LVVHMRRHTGEK 66
Query: 130 SAYC--EPCQEGFFSRDKLETHNIAKHGAQPYQC--ETCRKLF 168
C E C++ + + L+TH + G +PY C E C K F
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF 109
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+CE C K F+ + L+TH+ H
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVH 35
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KCE C K F RR L H HT EK
Sbjct: 12 PYKCEECGKGFICRRDLYTHHMVHTGEK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P++C C K F + L +H++ HT EK
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC C K F R +L H+ H+ EK
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+ C C K F +R L +H+K HT EK
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+ CE C K F + L+ H++ HT EK
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PYQC+ C K F + SL H + H
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHT 70
P++C+ C K F R +L HE+ HT
Sbjct: 10 PYQCKECGKSFSQRGSLAVHERLHT 34
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC C K F + L H+++HT E+
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEK 73
CE C + F + ALKRH ++HT EK
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC C K F L RH++ HT EK
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 97 HVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSA 131
H TD FKC+ C + K+ L HMKK + S
Sbjct: 32 HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+CE C K + SK++L H K H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVH 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+C+ CRK F SL H + H
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVH 35
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+ C++C K F L RH++ HT EK
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC C K F + L+ H+K HT E+
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKT 74
P+KCE C K + R L H++ H EKT
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F+ K TH + H
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIH 33
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P++C C K F L RH++ HT EK
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 47 HKCEHCEKEFENRRALKRHEKNH 69
HKC HC+K+F LK H K H
Sbjct: 3 HKCPHCDKKFNQVGNLKAHLKIH 25
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 247 SSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNM 306
S +YVL M + SN+ +L L + V N+ + + +M V + + LS
Sbjct: 11 SRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQ 70
Query: 307 YVLSLSNM 314
+ L+ ++
Sbjct: 71 FFLTEKDI 78
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 218 MYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVL 277
+YVL M + SN+ +L L + + + N+ + + +M V + + LS + L
Sbjct: 14 LYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFL 73
Query: 278 SLSNM 282
+ ++
Sbjct: 74 TEKDI 78
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 290 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPELLIKASS 345
+YVL M + SN+ +L L + V N+ + + +M DP P L S+
Sbjct: 14 LYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLST 69
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+C C+K F +K +L H + H
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P KC C K F R AL H K HT EK
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+ C C K F R L +H+K HT++K
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F SK L H + H
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTH 33
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F K L H + H
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G PY+C C K F K L +H + H
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTH 33
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 50 EHCEKEFENRRALKRHEKNHTQEKTFPC--TVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
E+C K F+ LK H+ +HTQ+ + C C K F ++ + H H K D
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 108 CPYVAK 113
C +V K
Sbjct: 67 CSFVGK 72
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
P C C K + + L RH + H + C C K F+ +++ H+ H
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 44 DGPHKCEH--CEKEFENRRALKRHEKNHTQEK 73
D P+ C+H C+K F L RH+K+H QEK
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH-QEK 31
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P KC+ C K F R L RH HT EK
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P +C+ C+++F LK H + HT EK
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 50 EHCEKEFENRRALKRHEKNHTQEKTFPC--TVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
E+C K F+ LK H+ +HTQ+ + C C K F ++ + H H K D
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 108 CPYVAK 113
C +V K
Sbjct: 67 CSFVGK 72
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+C+ C K F K SL H + H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+C C K F+ K L H + H
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTH 35
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P++C+ C K F L +H++ HT EK
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC C K F + L RH++ HT EK
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+ C C K F + L H++ HT EK
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+C C K F+ L H + H
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTH 35
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F SK L H + H
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIH 33
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+ C C K+F ++ L H++ HT EK
Sbjct: 10 PYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P++C C K F+ + +L H ++HT EK
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+C C K F +K SL H + H
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSH 35
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC C K F R L H+ HT EK
Sbjct: 12 PYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEER 187
G +P+ C C K F SK L H + H EE+
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTH--AEEK 37
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 16/18 (88%)
Query: 190 YQCELCGKSFNNKQTFSL 207
Y+C +CGK+F+++Q+ S+
Sbjct: 13 YECSVCGKAFSHRQSLSV 30
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 158 PYQCETCRKLFLSKYSLFTHNKKH 181
PY+C C K+F K L +H K H
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTH 35
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+P++C C+K F +K +L H + H
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTH 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,877,360
Number of Sequences: 62578
Number of extensions: 333207
Number of successful extensions: 1525
Number of sequences better than 100.0: 160
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 559
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)