RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4572
(345 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 37.8 bits (88), Expect = 2e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 61 ALKRHEKNHTQEKTFPCTVCLKMFKT 86
L+RH + HT EK + C VC K F +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 28.5 bits (64), Expect = 0.37
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 117 YLRYHMKKHRKEYSAYCEPCQEGF 140
LR HM+ H E C C + F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
Score = 25.4 bits (56), Expect = 4.9
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 91 EEHIASHVTDSEFKCDQCPYVAKR 114
H+ +H + +KC C
Sbjct: 3 RRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|222822 PHA01366, PHA01366, hypothetical protein.
Length = 337
Score = 36.1 bits (83), Expect = 0.020
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 199 FNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLS-LSNMYVLSLSKVRLNSSSNMYVLSLSN 257
N Q S +N+Y+ +L Y+ + N Y S + N+ V + S ++Y S
Sbjct: 182 DNPSQNISTNNIYIKNLIINYLDTFLNFYGYSAIDNVLV---GNTYVFSEIHLYDNSFIY 238
Query: 258 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN-MYVLSLSNMYVLSLSNMYVLSLSNMYV 316
+ S + + N Y+ N+YV SN + V N+Y+ N V + N+Y+
Sbjct: 239 NLIFYSSYGLIATSDNSYI---QNLYVYGDSNEITVYHGVNLYLCGYENTVVFNGVNLYI 295
Query: 317 LSLSNMYVLSLSNML 331
+ +N S+ N +
Sbjct: 296 IGPNNSTSGSIDNAI 310
Score = 29.6 bits (66), Expect = 2.8
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 194 LCGKSFNNKQTFSLSNMYVLSL----SNMYVLSSSNMYVLSLSNMYVLSLS-KVRLNSSS 248
L G ++ + N ++ +L S + +S N Y+ N+YV S ++ +
Sbjct: 219 LVGNTYVFSEIHLYDNSFIYNLIFYSSYGLIATSDNSYI---QNLYVYGDSNEITVYHGV 275
Query: 249 NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYV 284
N+Y+ N V + N+Y++ +N S+ N
Sbjct: 276 NLYLCGYENTVVFNGVNLYIIGPNNSTSGSIDNAIT 311
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 32.1 bits (73), Expect = 0.020
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 47 HKCEHCEKEFENRRALKRHEKNH 69
++C C K F+++ AL+ H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.4 bits (66), Expect = 0.18
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKH 125
++C +C V K LR HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.2 bits (63), Expect = 0.54
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 159 YQCETCRKLFLSKYSLFTHNKKH 181
Y+C C K+F SK +L H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.0 bits (60), Expect = 1.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 75 FPCTVCLKMFKTKAQREEHIASH 97
+ C C K+FK+K+ EH+ +H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family
contains a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 31.1 bits (70), Expect = 0.043
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 47 HKCEHCEKEFENRRALKRHEKNH 69
KC C K F ++ ALKRH + H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 28.8 bits (64), Expect = 0.26
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKH 125
FKC C L+ H++KH
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.1 bits (57), Expect = 3.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 75 FPCTVCLKMFKTKAQREEHIASH 97
F C +C K F +K + H+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus,
particularly the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 30.2 bits (69), Expect = 0.084
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEK 67
C C+K F++ AL+ H K
Sbjct: 1 QFYCVACDKYFKSENALENHLK 22
Score = 25.2 bits (56), Expect = 5.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 75 FPCTVCLKMFKTKAQREEHIAS 96
F C C K FK++ E H+ S
Sbjct: 2 FYCVACDKYFKSENALENHLKS 23
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 30.0 bits (68), Expect = 0.094
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 48 KCEHCEKEFENRRALKRHEKNH 69
KC C K F + LKRH + H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.8 bits (57), Expect = 3.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 160 QCETCRKLFLSKYSLFTHNKKH 181
+C C K F K +L H + H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.0 bits (55), Expect = 5.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 77 CTVCLKMFKTKAQREEHIASH 97
C C K F K+ + H+ +H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|214461 MTH00214, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 168
Score = 32.3 bits (74), Expect = 0.18
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 258 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVL 317
+V L ++L L M V S + Y +L + +L+L ++L L L ++++
Sbjct: 3 YFVFLLMFGFLLGL--MMVASSPSPYFGALG-LVLLALLGCFLLLSHGNSFLGLI-LFLI 58
Query: 318 SLSNMYVL-SLSNMLSSDPLPELL 340
L M V+ S S L++DP PE
Sbjct: 59 YLGGMLVVFSYSAALAADPYPESW 82
>gnl|CDD|220653 pfam10252, PP28, Casein kinase substrate phosphoprotein PP28.
This domain is a region of 70 residues conserved in
proteins from plants to humans and contains a
serine/arginine rich motif. In rats the full protein is
a casein kinase substrate, and this region contains
phosphorylation sites for both cAMP-dependent protein
kinase and casein kinase II.
Length = 82
Score = 30.4 bits (69), Expect = 0.27
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 32 KKRSRKSTPQKLDGPHKCEHCEKE-FENRRALKRHEKNHTQEKT 74
KKRS+K+ LD P + E+E E ++A +R+ K H Q KT
Sbjct: 8 KKRSQKAKEIDLDDPVELSRREREEIEKQKARERYMKLHAQGKT 51
>gnl|CDD|237164 PRK12664, PRK12664, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 527
Score = 32.4 bits (74), Expect = 0.37
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 252 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSL 311
+ + L + +Y L L VLS S L+L +Y+L + NM +
Sbjct: 11 YGFFFGLIFIVLPLLLYDWSEPVYNLDLVLFIVLSFS----LALIFLYILPIKNMRFSEM 66
Query: 312 SNMYVLSLSNMYVLSLSNMLS 332
+ +S++ +S S++
Sbjct: 67 LCYLLYYISSIAAISSSSLTL 87
Score = 29.7 bits (67), Expect = 2.4
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 268 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSL 327
VL ++Y + + L + +Y L L VLS S L+L +Y+L +
Sbjct: 4 VLYAISLY-GFFFGLIFIVLPLLLYDWSEPVYNLDLVLFIVLSFS----LALIFLYILPI 58
Query: 328 SNMLSSDPLPELLIKASS 345
NM S+ L LL SS
Sbjct: 59 KNMRFSEMLCYLLYYISS 76
>gnl|CDD|238213 cd00353, Ribosomal_S15p_S13e, Ribosomal protein S15
(prokaryotic)_S13 (eukaryotic) binds the central domain
of 16S rRNA and is required for assembly of the small
ribosomal subunit and for intersubunit association, thus
representing a key element in the assembly of the whole
ribosome. S15 also plays an important autoregulatory
role by binding and preventing its own mRNA from being
translated. S15 has a predominantly alpha-helical fold
that is highly structured except for the N-terminal
alpha helix.
Length = 80
Score = 29.4 bits (67), Expect = 0.62
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 113 KRIKYLRYHMKKHRKEYSA 131
+RI L H++K++K+ +
Sbjct: 28 ERIVNLTEHLEKNKKDKHS 46
>gnl|CDD|109373 pfam00312, Ribosomal_S15, Ribosomal protein S15.
Length = 83
Score = 28.5 bits (64), Expect = 1.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 107 QCPYVAKRIKYLRYHMKKHRKEYS 130
Q + +RI LR H+++H+K+Y
Sbjct: 23 QIALLTERIVRLRKHLEEHKKDYH 46
>gnl|CDD|177244 MTH00197, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 323
Score = 30.4 bits (69), Expect = 1.3
Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 18/154 (11%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVL--SLSNMYVLS-LSKVRLNSSSNMYVLSLSNMYVLS 262
S+ + + +S +Y S +Y L + + LSK L+S + Y S L
Sbjct: 168 SIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLV 227
Query: 263 LSNMYVLSLSNM-----YVLSLSNMYVLSLSNMYVLS--------LSNMYVLSLS-NMYV 308
+ LSL + + L + L SN+ +++ S Y LSL+ +
Sbjct: 228 FLGLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
Query: 309 LSLSNMYVL-SLSNMYVLSLSNMLSSDPLPELLI 341
LS + L ++ +Y ++ PL +
Sbjct: 288 LSNWMINFLMKINLLYSGLFILLMMMLPLLMIFT 321
>gnl|CDD|214414 MTH00063, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 522
Score = 29.8 bits (68), Expect = 2.5
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 215 LSNMYVLSSSNMYVLSLSNMYVLS-LSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSN 273
LS+ + + +L + LS L RL SLS+ + ++ S
Sbjct: 342 LSSFSSVVFNVSLLLVVILCVFLSYLYSFRLCLILFGVKSSLSS----GVRFLFFNSGLM 397
Query: 274 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSS 333
+++ N YV L + V+ L L L + +L L + SN++ S++
Sbjct: 398 VFLWLFINYYVFLLLD-EVVYLGVFISLVLLLVQLLGLLVGVLFYDSNLFSNWSSSLFGC 456
Query: 334 DPLPELL 340
D L EL
Sbjct: 457 DNLVELF 463
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 29.7 bits (66), Expect = 2.6
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 46 PHKCE--HCEKEFENRRALKRHEKN-HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSE 102
P+KC C K+++N+ LK H + H +K E+ D
Sbjct: 349 PYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHE----------NPSPEKMNIFSAKDKP 398
Query: 103 FKCDQCPYVAKRIKYLRYHMK 123
++C+ C K + L+YH K
Sbjct: 399 YRCEVCDKRYKNLNGLKYHRK 419
Score = 28.1 bits (62), Expect = 7.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 44 DGPHKCEHCEKEFENRRALKRHEKNHT 70
D P++CE C+K ++N LK H K+
Sbjct: 396 DKPYRCEVCDKRYKNLNGLKYHRKHSH 422
>gnl|CDD|219127 pfam06664, MIG-14_Wnt-bd, Wnt-binding factor required for Wnt
secretion. MIG-14 is a Wnt-binding factor. Newly
synthesised EGL-20/Wnt binds to MIG-14 in the Golgi,
targetting the Wnt to the cell membrane for secretion.
AP-2-mediated endocytosis and retromer retrieval at the
sorting endosome would recycle MIG-14 to the Golgi,
where it can bind to EGL-20/Wnt for next cycle of
secretion.
Length = 291
Score = 29.2 bits (66), Expect = 2.9
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 197 KSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLS 256
++ + L L + + + ++L + S S +S+ + L
Sbjct: 221 SELRTRRYSFYRYKF-LMLFTLLCAAIT----VALLGNFSSSFSTYYSSSAFFLGFYGLL 275
Query: 257 NMYVLSLSNMY 267
N+YV +L+ +Y
Sbjct: 276 NIYVYTLAYLY 286
Score = 27.7 bits (62), Expect = 9.1
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 226 MYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVL 285
++ Y+L L + + S + S L M L ++L +
Sbjct: 199 FILIVGICAYLLYLIFLIIKVFSELRTRRYSFYRYKFL--MLFTLLCAAITVALLGNFSS 256
Query: 286 SLSNMYVLSLSNMYVLSLSNMYVLSLSNMY 315
S S Y S + L N+YV +L+ +Y
Sbjct: 257 SFSTYYSSSAFFLGFYGLLNIYVYTLAYLY 286
>gnl|CDD|227443 COG5112, UFD2, U1-like Zn-finger-containing protein [General
function prediction only].
Length = 126
Score = 28.1 bits (62), Expect = 3.8
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 45 GPHKCEHCEKEFENRRALKRHEKNHTQEK 73
G H C C + F +AL H+K ++
Sbjct: 54 GQHYCIECARYFITEKALMEHKKGKVHKR 82
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 27.6 bits (62), Expect = 3.9
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 42 KLDGPHKCEHCEKEFENRRALKRH--EKNHT 70
K+ ++C +C K+F++ AL++H +K H
Sbjct: 46 KIHEGNECLYCGKQFKSLEALRQHMRDKGHC 76
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a
zinc-finger domain with the CxxCx(12)Hx(6)H motif,
found in multiple copies in a wide range of proteins
from plants to metazoans. Some member proteins,
particularly those from plants, are annotated as being
RNA-binding.
Length = 25
Score = 25.5 bits (57), Expect = 4.0
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 77 CTVCLKMFKTKAQREEHIASH 97
C +C F +++Q + H+
Sbjct: 3 CELCNVTFTSESQLKSHLRGK 23
>gnl|CDD|152118 pfam11682, DUF3279, Protein of unknown function (DUF3279). This
family of proteins with unknown function appears to be
restricted to Enterobacteriaceae.
Length = 128
Score = 27.9 bits (62), Expect = 4.0
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 22/65 (33%)
Query: 101 SEFKCDQCPYV------AKRIKYLR--------------YH--MKKHRKEYSAYCEPCQE 138
+E QCPY+ +RIK L+ +H M H YC C
Sbjct: 59 TEHGLQQCPYLDPEEKEIQRIKRLQQMVPDAYPVPRVASWHCVMCHHDYYGEKYCPACGT 118
Query: 139 GFFSR 143
G +SR
Sbjct: 119 GIYSR 123
>gnl|CDD|185542 PTZ00293, PTZ00293, thymidine kinase; Provisional.
Length = 211
Score = 28.5 bits (64), Expect = 4.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 130 SAYCEPC-QEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIE 185
+A C C +E FS+ +++ I G + TCRK F +K +K +E
Sbjct: 137 TAVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFRTKQLAEKELEKQDLVE 193
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 28.8 bits (65), Expect = 4.6
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 199 FNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNM 258
F N+ L M +L + S +Y ++ YVL + L + + +
Sbjct: 233 FKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVT----YVLGDPE--LFAYLLLLASGAGLL 286
Query: 259 YVLSLSNMYVLSLSNMYVLSLSN-MYVLSLSNMYVLSLSNMYVL 301
L L V + + + + +Y ++ ++
Sbjct: 287 IGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLI 330
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 29.0 bits (65), Expect = 5.0
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFN 200
Q Y C+TC+K + T + + QCE CGK N
Sbjct: 139 QLY-CDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLN 181
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 26.2 bits (57), Expect = 5.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 159 YQCETCRKLFLSKYSLFTHNKKH 181
Y+C C ++++ + S+ TH +KH
Sbjct: 6 YECPICGEIYIKRKSMITHLRKH 28
>gnl|CDD|227480 COG5151, SSL1, RNA polymerase II transcription
initiation/nucleotide excision repair factor TFIIH,
subunit SSL1 [Transcription / DNA replication,
recombination, and repair].
Length = 421
Score = 28.4 bits (63), Expect = 5.6
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
S +C CQ F G YQCE C+ F S +F H H
Sbjct: 359 NPKSTHCFVCQGPFPKPPVSPFDESTSSGR--YQCELCKSTFCSDCDVFIHETLH 411
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase.
Length = 301
Score = 28.2 bits (62), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 29 GEVKKRSRKSTPQKLDGPHKCEHCEK 54
G+ K S K+ L H+C+HCEK
Sbjct: 208 GKKAKESTKAVASNLHFDHQCQHCEK 233
>gnl|CDD|214448 MTH00173, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 231
Score = 27.9 bits (63), Expect = 7.2
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 204 TFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSS-NMY--VLSLSNMYV 260
+ LS M + S+ +SSSN + S+ ++VL++S SS N+ L LS++++
Sbjct: 23 MWLLSLMSLFFFSSSVWVSSSN--LSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFL 80
Query: 261 LSLSNMYVLSLSNM--YVLSLSNMYVLSLSNMYVLSLSNMYVLSLS 304
+S L+LS + +V S+++ + S L+L L LS
Sbjct: 81 FLIS----LNLSGLLPFVFSVTSHLAFTFS----LALPLWLSLILS 118
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 24.5 bits (54), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 47 HKCEHCEKEFENRRALKRHEKNH 69
H C C K F + +AL H+K+H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
>gnl|CDD|130027 TIGR00952, S15_bact, ribosomal protein S15, bacterial/organelle.
This model is built to recognize specifically bacterial,
chloroplast, and mitochondrial ribosomal protein S15.
The homologous proteins of Archaea and Eukarya are
designated S13 [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 86
Score = 26.1 bits (58), Expect = 8.9
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 107 QCPYVAKRIKYLRYHMKKHRKEYS 130
Q + +RI L H+K ++K++
Sbjct: 25 QIALLTERINQLTEHLKANKKDHH 48
>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 573
Score = 27.8 bits (63), Expect = 9.1
Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 16/126 (12%)
Query: 218 MYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYV--LSLSNMYVLSLSNMYVLSLSNMY 275
+Y S + + SL+N+ + S M + L M + S + L Y
Sbjct: 396 IYYSMSGDFNLKSLNNLS---------DESKFMLKSMILLLFMSIFGGSMLSWLIFPEPY 446
Query: 276 VLSLSNMY-VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLS--LSNMYVLSL--SNM 330
++ L +L+L + + + +S Y L Y LS L +M+ + +
Sbjct: 447 MICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYG 506
Query: 331 LSSDPL 336
+S PL
Sbjct: 507 ISYYPL 512
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.130 0.376
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,697,706
Number of extensions: 1405333
Number of successful extensions: 1601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1463
Number of HSP's successfully gapped: 128
Length of query: 345
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 247
Effective length of database: 6,590,910
Effective search space: 1627954770
Effective search space used: 1627954770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)